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Research about California

Source-linked reports with geographic coverage including California.

At least 811 records · Page 45Linked to original sources

Effects of imported recharge on fluoride trends in groundwater used for public supply in California

Fluoride is a naturally occurring element in groundwater that supports bone and dental health at low concentrations but can cause health problems at elevated concentrations in drinking water. This study investigates spatial and temporal trends for fluoride concentrations in untreated groundwater from over 20,000 public supply wells in California. The presence of a significant temporal trend in fluoride concentrations in a well was assessed using the Mann-Kendall test and a spatial-weighting approach was used to identify the areal extent of the groundwater resources with significant trends. Less than 2% of the groundwater resources used for public supply in the state have concentrations above the California maximum contaminant level of 2 mg/L. Approximately 14% of the groundwater resource used for public supply show a significant recent trend (2000–2019), with decreasing trends occurring in 10% of the resource. Potential drivers for trends were evaluated in two of the areas in southern California with the greatest prevalence of trends but distinct climate and hydrogeological characteristics. Aquifers in the Mojave and Whitewater River watersheds, located in the desert region, and the Los Angeles Basin, located on the coast, have been replenished with imported and treated water over the last half century to maintain sustainable groundwater levels. The recharge of imported water with different chemistries has altered the geochemical conditions in the aquifers, driving changes in fluoride concentrations.

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The influence of soil development on the depth distribution and structure of soil microbial communities.

Although it has been shown that the interaction of climate and time shape the dynamics of soil organic matter (SOM) storage and preservation in soil, the role of soil microbial communities in this dynamic remains unclear. Microbial communities are present throughout soil profiles and likely play critical roles in SOM and nutrient cycling, however the influence of other factors such as soil development (i.e., age) and the composition SOM on microbial community variation with depth has yet to be quantified. Improving our understanding of the relationship between soil development, soil depth, and microbial communities may provide insight to the critical role they play in cycling and preservation of SOM, as well as more mechanistic predictions of the response of soil communities to change, such as landscape-scale changes in available moisture or temperature regimes. Here we compare soils spanning a soil age by climate gradient (i.e., climo-chronosequence) to better understand the mechanisms which influence soil microbial community structure and the molecular composition of SOM. While we observed little depth-dependence in metrics of microbial community structure (i.e., composition, diversity, dissimilarity) across the range of soil development under a wetter climate, we found significant depth-dependent changes in community metrics under a drier climate, which became more pronounced as soils became older. This shift in bacterial and archaeal community structure and diversity is most apparent below a clay-rich argillic horizon formed in the older, drier soils. The molecular composition of SOM as measured by high resolution mass spectrometry (i.e., FTICR MS) also exhibited similar shifts in composition with soil depth and age. Our results highlight how soil moisture shapes the interaction of soil development, SOM, and microbial community composition. Differences in the moisture regime between our two study sites drives differences in biogeochemical depth gradients and subsequent variation in soil microbes and SOM. This suggests that knowledge of not just the pedogenic trajectory of soil development, but also the spatial position relative to distinct pedogenic features, are important for explaining variations in the depth-dependencies of microbial communities and associated SOM.

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A unified perspective of seismicity and fault coupling along the San Andreas Fault

The San Andreas Fault (SAF) showcases the breadth of possible earthquake sizes and occurrence behavior; in particular, the central SAF is a microcosm of such diversity. This section also exhibits the spectrum of fault coupling from locked to creeping. Here, we show that the observations of aseismic slip, temporal clustering of seismicity, and spatial variations in earthquake size distributions are tightly connected. Specifically, the creep rate along the central SAF is shown to be directly proportional to the fraction of nonclustered earthquakes for the period 1984–2020. This relationship provides a unified perspective of earthquake phenomenology along the SAF, where lower coupling manifests in weaker temporal clustering, with repeating earthquakes as an end-member. This new paradigm provides additional justification for characterizing the northwest ∼75 kilometers of the creeping segment as a transition zone, with potential implications for seismic hazard.

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Acetylenotrophic and diazotrophic Bradyrhizobium sp. strain I71 from TCE-contaminated soils

Abstract Acetylene (C 2 H 2 ) is a molecule rarely found in nature, with very few known natural sources, but acetylenotrophic microorganisms can use acetylene as their primary carbon and energy source. As of 2018 there were 15 known strains of aerobic and anaerobic acetylenotrophs; however, we hypothesize there may yet be unrecognized diversity of acetylenotrophs in nature. This study expands the known diversity of acetylenotrophs by isolating the aerobic acetylenotroph, Bradyrhizobium sp. strain I71, from trichloroethylene (TCE)-contaminated soils. Strain I71 is a member of the class Alphaproteobacteria and exhibits acetylenotrophic and diazotrophic activities, the only two enzymatic reactions known to transform acetylene. This unique capability in the isolated strain may increase the genus’ economic impact beyond agriculture as acetylenotrophy is closely linked to bioremediation of chlorinated contaminants. Computational analyses indicate that the Bradyrhizobium sp. strain I71 genome contains 522 unique genes compared to close relatives. Moreover, applying a novel hidden Markov model of known acetylene hydratase (AH) enzymes identified a putative AH enzyme. Protein annotation with I-TASSER software predicted the AH from the microbe Syntrophotalea acetylenica as the closest structural and functional analog. Furthermore, the putative AH was flanked by horizontal gene transfer (HGT) elements, like that of AH in anaerobic acetylenotrophs, suggesting an unknown source of acetylene or acetylenic substrate in the environment that is selecting for the presence of AH. Importance The isolation of Bradyrhizobium strain I71 expands the distribution of acetylene-consuming microbes to include a group of economically important microorganisms. Members of Bradyrhizobium are well studied for their abilities to improve plant health and increase crop yields by providing bioavailable nitrogen. Additionally, acetylene-consuming microbes have been shown to work in tandem with other microbes to degrade soil contaminants. Based on genome, cultivation, and protein prediction analysis, the ability to consume acetylene is likely not widespread within the genus Bradyrhizobium . These findings suggest that the suite of phenotypic capabilities of strain I71 may be unique and make it a good candidate for further study in several research avenues.

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Middle and late Miocene marine mammal assemblages from the Monterey Formation of Orange County, California

This study provides new stratigraphic data and identifications for fossil marine mammals from the Monterey Formation in the Capistrano syncline, Orange County, California, showing that there are two distinct marine mammal assemblages. Until now, marine mammals from the Monterey Formation of Orange County have been considered to represent a single assemblage that is 13.0–10.0 Ma in age. By combining data from diatoms with the geographic positions of sites, faunal analysis, and data from the literature, we can assign 59 sites to three main levels: the lower part (ca. 16–13 Ma), the middle part (ca. 13–10 Ma), and the upper part (ca. 10–8 Ma). We assigned 308 marine mammal specimens to 38 taxa, resulting in 97 occurrences (unique record of a taxon for a given site). Of the 38 taxa we identified within the study area, 15 taxa are restricted to the lower part of the Monterey Formation, 15 are restricted to the upper part of the Monterey Formation, eight were found in both, and none has yet been reported from the middle (possibly condensed) section. Six of the eight taxa that occur in both the lower and upper parts of the Monterey Formation are higher-level taxa, which accounts for their broad temporal range. The recognition of two distinct marine mammal assemblages in the Monterey Formation of Orange County is an important step toward a better-calibrated sequence of faunal evolution in the region while improving the utility of marine mammals for regional biostratigraphy.

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A refined assessment of the paleoceanographic and tectonic influences on the deposition of the Monterey Formation in California

Application of updated diatom biochronology to the Monterey Formation and related biosiliceous rocks reveals the imprint of both global paleoclimatic/ paleoceanographic and regional tectonic events. A rise in global sea level combined with regional tectonic deepening associated with the development of the transform California margin resulted in the abrupt onset of deposition of fine-grained Monterey sediments between 18 and 16 Ma. The base of the Monterey does not mark a silica shift in diatom deposition from the North Atlantic to the North Pacific. Rather, a North Atlantic decline of diatoms after ~13 Ma and increasing divergence in nutrient levels between the North Atlantic and North Pacific between ~13 and 11 Ma, coincided with a major enhancement of diatom deposition in the Monterey Formation. A stratigraphically condensed interval of phosphate-rich sediments between 13 and 10 Ma in coastal southern California appears to have resulted from sediment starvation on offshore banks during a period of higher sea level, as inland sections commonly contain thick sequences of diatomaceous sediment. Increasing latitudinal thermal gradients in the latest Miocene, which triggered a biogenic bloom in the equatorial Pacific at 8 Ma, also lead to enhanced diatom deposition in the uppermost Monterey and overlying biosiliceous rocks. Uplift of the California coastal ranges after ~5.2 Ma resulted in an increasing detrital contribution that obscured the presence of diatoms in onshore sediments. Major reduction in coastal upwelling in the early Pliocene at ~4.6 Ma caused a drastic reduction of diatoms in sediments of offshore southern California.

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Miocene terrestrial paleoclimates inferred from pollen in the Monterey Formation, Naples Coastal Bluffs section, California

We present here a comprehensive record of Miocene terrestrial ecosystems from exposures of the Monterey Formation along the Naples coastal bluffs, west of Santa Barbara, California. Constrained by an updated chronology, pollen analyses of 28 samples deposited between 18 and 6 Ma reflect the demise of mesophytic taxa that grew in a warm, wet environment during the late early and early middle Miocene and the development of a summer-dry/winter-wet Mediterranean climate during the late Miocene. Broadleaf tree pollen from mesophytic woodlands and forests now found in the southeastern United States and China ( Liquidambar , Tilia , Ulmus , Carya ) characterized the Miocene climatic optimum (16.9–14.7 Ma), the middle Miocene climate transition (14.7–13.8 Ma), and the interval up to ca. 13.0 Ma. Subsequently, during the late middle to early late Miocene, between 13.3 and 9.0 Ma, oak woodlands and herbs (Asteraceae, Amaranthaceae, Poaceae) from beach scrub and chaparral increased as ocean temperatures cooled and the climate became drier. Between ca. 8.9 and 7.6 Ma, pine increased mostly at the expense of oak ( Quercus ) and herbs, suggesting a period of increasing precipitation. During the latest Miocene (7.5–6.0 Ma), an increase of herb-dominated ecosystems (chaparral, coastal scrub) at the expense of pine reflects the full development of a summer-dry/winter-wet climate in coastal southern California.

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Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)

Stable isotopes recorded in fish eye lenses are an emerging tool to track dietary shifts coincident with use of diverse habitats over the lifetime of individuals. Eye lenses are metabolically inert, sequentially deposited, archival tissues that can open avenues to chronicle contaminant exposures, diet histories, trophic dynamics and migratory histories of individual fishes. In this study, we demonstrated that trophic histories reconstructed using eye lenses can resolve key uncertainties regarding diet and trophic habitat shifts. Clear Lake hitch ( Lavinia exilicauda chi ), a threatened cyprinid, inhabits a single lake (Clear Lake, Lake County, California) and utilizes tributary streams for reproduction. Bayesian mixing models applied to δ 13 C and δ 15 N recorded in eye lenses uncovered ontogenetic diet shifts that corresponded with shifts in occupation of habitats providing spawning (tributary streams), rearing (littoral lake), and growth (pelagic lake) functions. The reconstruction of size-structured trophic and habitat information can provide vital information needed to manage and conserve imperiled species such as the Clear Lake hitch.

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From drought to deluge: Spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish

We developed a novel statistical model to relate the daily survival and migration dynamics of an endangered anadromous fish to river flow and water temperature during both extreme drought and severe flooding in an intensively managed river system. Our Bayesian temporally stratified multistate mark recapture model integrates over unobserved travel times and route transitions to efficiently estimate covariate relationships and includes an adjustment for telemetry tag battery failure. We applied the model to acoustic-tagged juvenile Sacramento river winter-run Chinook salmon (Oncorhynchus tshawytscha) and found that survival decreased with decreasing river flows and increased water temperatures. We found that fish were likely to enter at a large floodplain during flood conditions and that survival in floodplain was comparable to the mainstem Sacramento river. Our study demonstrates the response of an endangered anadromous fish population to extreme spatial and temporal variability in habitat accessibility and quality. The general model framework we introduce here can be applied to telemetry of migratory fish through systems with multiple routes to efficiently estimate spatiotemporal variation in survival, travel time, and routing.

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New generation hyperspectral sensors DESIS and PRISMA provide improved agricultural crop classifications

Using new remote sensing technology to study agricultural crops will support advances in food and water security. The recently launched, new generation spaceborne hyperspectral sensors, German DLR Earth Sensing Imaging Spectrometer (DESIS) and Italian PRecursore IperSpettrale della Missione Applicativa (PRISMA), provide unprecedented data in hundreds of narrow spectral bands for the study of the Earth. Therefore, our overarching goal in this study was to use these data to explore advances that can be made in agricultural research. We selected PRISMA and DESIS images during the 2020 growing season in California's Central Valley to study seven major crops. PRISMA and DESIS images were highly correlated (R 2of 0.9–0.95). Out of the 235 DESIS bands (400–1000 nm) and 238 PRISMA bands (400–2500 nm), 26 (11%) and 45 (19%) bands, respectively, were optimal to study agricultural crops. These optimal bands provided crop type classification accuracies of 83–90%. Hyperspectral vegetation indices to estimate plant pigment content, stress, biomass, moisture, and cellulose/lignin content were also identified.

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Influence of anthropogenic subsidies on movements of common ravens

Anthropogenic subsidies can benefit populations of generalist predators such as common ravens (ravens; Corvus corax ), which in turn may depress populations of many types of species at lower-trophic levels, including desert tortoises (Gopherus agassizii ) or greater sage-grouse (Centrocercus urophasianus). Management of subsidized ravens often has targeted local breeding populations that are presumed to affect species of concern and ignored “urban” populations of ravens. However, little is known about how ravens move, especially in response to the presence of anthropogenic subsidies. Therefore, subsidized ravens from distant populations that are not managed may influence local prey. To better understand this issue, we deployed global positioning system – global system for mobile communications transmitters to track movements of 19 ravens from September to December 2020 relative to 2 land cover types that provide subsidies: developed areas and cultivated crops. On average, ravens moved 41.5 km (±30.5) per day, although daily movement distances ranged from 0.13– 206.1 km. Raven movement among cover types during the non-breeding season varied widely, with 100% of individuals each using land cover types that provide subsidy and other types at least once in the season. On 100% of days ravens used areas that did not provide subsidy, on 86.7% of days they used developed areas, and on 20.5% of days they used cultivated crops. Although on some days a raven would stay exclusively in areas that did not provide subsidy, there were no days in which a single raven ever stayed exclusively in developed or cultivated crops. Ravens moved shorter distances on days when they used subsidies more frequently. Further, time spent in developed areas and cultivated crops increased when ravens roosted closer to them, although this effect was greater for developed areas than for cultivated crops. Individual ravens were not associated exclusively with either of the subsidy-providing landscapes we considered, but instead all birds used both subsidized and other landscapes. Our research suggests that management of ravens during the non-breeding season and possibly during the breeding season, intended to reduce risk of predation on desert tortoises, will be most effective if conducted on a broad scale because of distances the birds travel and the lack of separation between putative “urban” and “natural” populations of ravens.

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Reference values and comparison of blood chemistry and plasma protein values between gold standard analyzers and four point-of-care devices in free-ranging canvasbacks (Aythya valisineria)

Accurate, timely, and cost-effective blood chemistry analysis is an essential tool for directing emergency treatment, monitoring the health status of captive and free-ranging individuals and flocks, and improving the efficacy of conservation actions. Blood samples were obtained from 52 canvasbacks ( Aythya valisineria ) that were captured on San Francisco Bay, California, during December 2017 as part of a long-term study. Reference values and clinical agreement were determined for blood chemistry and plasma protein parameters among four commonly used point-of-care devices (VetScan ® VS2, i-STAT ® , AlphaTRAK ® 2 glucometer, refractometer) and two gold standard laboratory analyzers (Roche cobas ® c501, Helena SPIFE 3000 system). Canvasback reference values were generally within expected ranges for Anatidae species with the exception of higher upper limits for sodium and chloride. Creatine kinase and aspartate transaminase values exceeded a published threshold for diagnosis of capture myopathy even though study birds were captured using low-stress techniques and successfully released. With the exception of higher alkaline phosphatase in hatch-year canvasbacks, no age or sex differences were observed for any analyte in this population that was captured during a nonbreeding period. Analysis of analyzer agreement found raw VetScan aspartate transaminase, calcium, glucose, and uric acid values; corrected VetScan albumin, potassium, sodium, and total protein values; raw i-STAT glucose and potassium values; and corrected i-STAT sodium and chloride values were clinically interchangeable with Roche cobas values. Raw VetScan and i-STAT glucose values were also interchangeable. However, none of the Roche or point-of-care analyzer plasma protein values were in clinical agreement with gold standard electrophoresis values. The findings of this study highlight the need for analyzer- or technique-specific reference values and provide biologists and veterinarians quantitative reference values using currently available analyzers to better assess and respond to the health of individuals and populations.

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Eimeria albigulae (Apicomplexa: Eimeriidae): New host and distributional record from the Bryant's woodrat, Neotoma bryanti (Rodentia: Cricetidae), from California, U.S.A.

Fecal samples, collected in July 2020 and April–May 2021 from 17 Bryant's woodrats, Neotoma bryanti Merriam, from 3 sites in San Diego, Orange, and San Bernardino counties, California, were examined for coccidial parasites. Three of 8 (38%) woodrats from a single site in San Diego County were found to be passing oocysts of Eimeria albigulae Levine, Ivens, and Kruidenier, 1957. Subspheroidal oocysts measured (average length [L] × width [W]) 23.5 × 21.4 µm with an average L/W ratio of 1.1. A micropyle was absent, but an oocyst residuum as well as a single polar granule was present. Ovoidal sporocysts measured (average L × W) 10.1 × 7.5 µm with an L/W ratio average of 1.4. A nipple-like Stieda body was present, but sub-Stieda and para-Stieda bodies were absent. The sporocyst residuum was composed of loosely packed granules between and around the sporozoites. This woodrat represents the sixth host to harbor this coccidian. We document a new host as well as a geographic distribution record for E. albigulae .

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Optimizing survey design for shasta salamanders (Hydromantes spp.) to estimate occurrence in little-studied portions of their range

Shasta salamanders (collectively, Hydromantes samweli, H. shastae, and H. wintu; hereafter, Shasta salamander) are endemic to northern California in the general vicinity of Shasta Lake reservoir. Although generally associated with limestone, they have repeatedly been found in association with other habitats, calling into question the distribution of the species complex. Further limiting our knowledge of the species' distributions is that they are only active or available for sampling on the soil surface for a small portion of the year, and detection probabilities for the species have never been estimated. We developed and implemented a survey protocol designed to estimate detection, availability, and occurrence probabilities from December 2019 through March 2020. We provide inference on Shasta salamander occurrence in portions of their range that have received little survey effort. We found that Shasta salamander occurrence was positively associated with the percent cover of embedded rock, and the species' availability (i.e., probability of being active on the soil surface during sampling) was positively related to relative humidity. The probability of occurrence of Shasta salamanders in our study area was low, and our winter-to-spring survey protocol was effective for estimating detection, availability, and occurrence probabilities in the study area and at specific sites. We suggest that conducting replicate surveys that quantify animal availability and detection probabilities will facilitate a better understanding of the habitat associations of Shasta salamanders and other rare species that might often be unavailable for detection.

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Creep rate models for the 2023 US National Seismic Hazard Model: Physically constrained inversions for the distribution of creep on California faults

Widespread surface creep is observed across a number of active faults included in the United States (US) National Seismic Hazard Model (NSHM). In northern California, creep occurs on the central section of the San Andreas fault, along the Hayward and Calaveras faults through the San Francisco Bay Area, and to the north coast region along the Maacama and Bartlett Springs faults. In southern California, creep is observed across the Coachella segment of the San Andreas fault, through the Brawley Seismic Zone, and along the Imperial and Superstition Hills faults. Seismic hazard assessments for California have accounted for creep using various data and methods, including the most recent Uniform California Earthquake Rupture Forecast, Version 3 (UCERF3) in 2013. The purpose of this study is to expand and update the UCERF3 creep rate data set for the 2023 release of the US NSHM and to invert geodetic data and the surface creep rate data for the spatial distribution of interseismic fault creep on California faults using an elastic model with physical creep constraints. The updated surface creep rate compilation consists of a variety of data types including alignment arrays, offset cultural markers, creepmeters, Interferometric Synthetic Aperture Radar, and Global Positioning System data. We compile a total of 497 surface creep rate measurements, 400 of which are new and 97 of which appear in the UCERF3 compilation. We compute creep rate distributions for each of the five 2023 NSHM geodetic‐based and geologic‐based deformation models. Computed creep rates are used to reduce the total fault moment rate available for earthquake sequences in the NSHM model. We find that, despite relatively large variability in model long‐term slip rates across all five deformation models, the variability in depth‐averaged creep rate across all models is relatively small, typically 5–10 mm/yr along the creeping San Andreas fault section and only 2–4 mm/yr along the Maacama and Rodgers Creek‐Hayward faults.

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Rural turtles: Estimating the occupancy of Northwestern Pond Turtles and non-native red-eared sliders in agricultural habitats in California's Sacramento Valley and Sacramento-San Joaquin River Delta

The Northwestern Pond Turtle ( Actinemys marmorata ; WPT) was once widespread throughout the Sacramento Valley and the Sacramento-San Joaquin River Delta. Much of its historical range has been converted into agricultural land, reducing and altering aquatic habitat and surrounding uplands. Red-eared Sliders ( Trachemys scripta elegans ; RES) have been introduced throughout much of the existing WPT range, particularly near urban centers, potentially competing with WPT for resources. Previous surveys for turtles in central California have primarily focused on rivers, lakes, and protected wetlands. Little is known about where WPT and RES occur in the vast expanses of agricultural land across the Sacramento Valley and Sacramento-San Joaquin River Delta. Using aquatic hoop nets, we surveyed 142 locations (102 irrigation canal sites, 39 wetlands, 1 tidally influenced slough) across 8 counties during the summers of 2018 and 2019. Both species were detected in agricultural habitats. Using occupancy modeling, we estimated that WPT occur at 44 (95% CRI = 38–53) of our trapping sites and RES occur at 51 (41–66) sampled sites. Co-occurrence of these 2 species was rare; the species were found together at only 6 sites. RES were primarily found in restored wetlands near major roads and the Sacramento metropolitan area, whereas WPT were more commonly found farther from urban areas in wider canals. Our work provides a picture of how WPT and RES occupy this modified agroecosystem that can inform future conservation efforts.

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Response study of a tall San Diego, California building inferred from the M7.1 July 5, 2019 Ridgecrest, California earthquake motions

The shaking of a new 24-story tall building in San Diego, California, was recorded by its seismic monitoring array during the M7.1 Ridgecrest, California earthquake of July 5, 2019. The building is located ~340 km from the epicenter of the event. The building is a special moment framed (SMF) steel structure with reduced beam sections (RBS) and viscous damper systems (DS). Peak accelerations recorded by the array indicate 0.007 g at the basement level and 0.044 g at the roof level. Spectral analyses and system identification methods indicate coupled NS, EW, and torsinal fundamental modes at ~ 0.30 Hz frequency and critical damping percentages < 5%. For the EW and fundamental torsional modes, critical damping percentages are < 2.5%. At the low-level shaking, the computed largest average drift ratio is ~ 0.065%, less than 0.5% of the value considered to be the starting threshold of nonlinear behavior or damage.

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Budburst timing of valley oaks at Hastings Reservation, central coastal California

We studied the timing of budburst of valley oak ( Quercus lobata Née) at Hastings Reservation, central coastal California. Similar to other taxa, budburst was advanced by warmer temperatures. Over the 30-year study period, however, there were no significant trends in either air temperature or the timing of budburst, except during the 2014–2016 drought, during which the earliest budburst dates were advanced. Several individual tree characteristics correlated with budburst timing, including access to ground water, soil available phosphorus, and elevation, the effects of which were in turn correlated with winter microclimatic conditions of individual trees. Budburst timing was significantly related to both subsequent acorn production and radial growth; trees leafing out on or near the population mean for the year experienced greater radial growth and produced larger acorn crops than trees leafing out earlier or later than the mean. Differences in acorn production were due to both differences in phenology among trees and plasticity in the phenology of individual trees across years, while differences in radial growth were primarily due to plasticity in individual tree phenology. Valley oak phenology exhibits considerable variability; the extent to which this plasticity will help this keystone California species adapt to future climate change remains to be seen.

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