USGS Science⌕ Search

SEARCH · USGS Science

Results for “One Ecosystem”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,657 records · Page 92Linked to original sources

A statement of common ground regarding the role of wildfire in forested landscapes of the western United States

For millennia, wildfires have markedly influenced forests and non-forested landscapes of the western United States (US), and they are increasingly seen as having substantial impacts on society and nature. There is growing concern over what kinds and amounts of fire will achieve desirable outcomes and limit harmful effects on people and nature. Moreover, the increasing complexity surrounding cost and management of wildfires suggests that science should play a more prominent role in informing decisions about the need for fire in nature, and the need for society to adapt to the inevitable occurrence of different kinds and amounts of fire and smoke. Scientists widely view the natural wildfire regime as essential to western US forest ecosystem functioning. However, debates continue over how much low-, moderate-, and high severity fire is “natural” or desirable in these forests. Ongoing disagreement centers on the characteristics and importance of historical proportions and patch size distributions of low-, moderate-, and high-severity fires of dry, moist, and cold forests, and on the ecological consequences of changing fire-patch patterns and relative abundances. Scientists also debate the relative importance of climate and extreme weather versus fuel as drivers of high-severity fire, as well as the effectiveness and value of fuel treatments for reducing risks of undesired fire effects. Climate research shows that we should expect shifting future climates in all ecoregions. These expected changes make it difficult for scientists, land managers, and decision-makers to know the degree to which future forest management should be informed by historical conditions. There also is disagreement about how to make western forests more resilient to future disruptions in both climatic and fire regimes. To complicate matters, areas of scientific agreement -- the “common ground” shared by those in the research community -- are poorly articulated. Thus, the focus of the Fire Research Consensus (FRC) project has been to identify common ground among scientists, and provide a summary that can inform management. Land and fire managers are one audience for this report, as are stakeholders and the interested public. Our analysis, which results from extensive scientific literature reviews and questionnaires sent to western fire scientists and land managers, is summarized in nine key topics: A. Fire history and fire ecology vary with geography. B. Human impacts and management history vary with geography. C. Fire is a keystone process, which occurs in almost all western US forest types. D. Knowledge of historical range of variability (HRV) is useful but does not dictate land management goals. E. Forest structure, composition, and fuels have changed, affecting burn severity and fire extent. F. Climate and fuels both influence current fire sizes and their severities. G. The role of changing climatic conditions is increasingly important. H. Multiple fire ecology and fire history research approaches can be useful for characterizing fire regimes. I. Many existing fire management tools and strategies can be useful moving forward. We found much common ground that will be useful to scientists, managers, citizens, and policy decision-makers. For example, there is wide agreement among scientists that fire is one of the most essential influences on western forests and that more fire is needed on most landscapes, but not all wildfire behavior or extent will do. Fires can produce more positive benefits and fewer negative impacts when they burn with an ecologically appropriate mix and pattern of low, moderate, and high severity. Managers will need assistance and funding to create landscape conditions that favor more desirable fire behavior at broad spatial scales. Note that much societal impact from western wildfires occurs in non-forested landscapes that are not covered in this report, where findings would differ from those reported here for forested landscapes. We summarize additional key points below.

Western United States↗

Greenup and evapotranspiration following the Minute 319 pulse flow to Mexico: An analysis using Landsat 8 Normalized Difference Vegetation Index (NDVI) data

In the southwestern U.S., many riparian ecosystems have been altered by dams, water diversions, and other anthropogenic activities. This is particularly true of the Colorado River, where numerous dams and agricultural diversions have affected this water course, especially south of the U.S.–Mexico border. In the spring of 2014, 130 million cubic meters of water was released to the lower Colorado River Delta in Mexico. To understand the impact of this pulse flow release on vegetation in the delta’s riparian corridor, we analyzed a modified form of Landsat 8 Operational Land Imager (OLI) Normalized Difference Vegetation Index (NDVI*) data. We assessed greenup during the growing period and estimated actual evapotranspiration (ET a ) for the period prior to (yr. 2013) and following (i.e., yr. 2014 and 2015) the pulse flow. We found a significant increase in NDVI* from 2013 to 2014 (P < 0.05) and a decrease from 2014 to 2015; however, 2015 levels were still significantly higher than in 2013. ET a was also higher in 2014 vs. 2013, with an estimated 74.5 million cubic meters in 2013 and 88.9 in 2014. The most intense greening occurred in the zone of inundation but also extended into the non-flooded part of the riparian zone, indicating replenishment of groundwater. These findings suggest the peak response by vegetation to the flow lasted about one year, followed by a decrease in NDVI*. As a long term solution to the declining condition of vegetation, additional pulse releases are likely needed for restoration and survival of riparian plant communities in the Colorado River Delta.

Ecological Engineering↗

DNA metabarcoding of biocrust lichen-forming fungi detects responses to disturbance and invasion

Biocrusts dominated by bryophytes and lichens perform important functions in dryland ecosystems but monitoring these communities can be cost prohibitive over broad scales. We explored DNA metabarcoding as a potential tool for monitoring biocrust lichen communities at a site in Washington (U.S.A.) that had already been surveyed for lichen diversity and community composition. We developed a DNA reference library using the internal transcribed spacer (ITS) region from specimens collected in the study area. We also visually estimated the abundance of lichen species or groups in 22 plots spanning a range of wildfire history and invasion by the exotic annual grass Bromus tectorum . At these plots, we collected bulk lichen community samples for metabarcoding using two approaches: small sample dishes and combined biocrust fragments collected using tweezers from all species observed. We used PacBio sequencing to simultaneously generate ITS barcode sequences for all lichen-forming fungi (LFF) present in the bulk samples, clustering similar sequences into operational taxonomic units (OTUs). Lichen communities detected visually and using DNA metabarcoding both captured a reduction of biocrust diversity and change in community composition related to the abundance of B. tectorum , suggesting that metabarcoding was able to identify the same dominant ecological pattern in biocrust lichens as visual sampling. The tweezer sampling approach captured on average 12.3 more OTUs than the dish approach and some taxa were more consistently detected by one approach or the other. After using the specimen DNA reference library to identify species associated with LFF OTUs, we determined that metabarcoding and visual sampling detected overlapping but different lichen species. Metabarcoding failed to detect common collected taxa, including: Arthonia glebosa, Candelariella spp ., Enchylium tenax, Lecanora muralis, Lecidella spp ., Leptochidium albociliatum, Massalongia carnosa, and Trapeliopsis glaucopholis. However, metabarcoding detected OTUs not visually observed in the genera Elixia, Lecanora, Lecanoropsis, Bacidina, Pyrenodesmia, Xanthocarpia, Trapelia, Verrucaria, and Verruculopsis . Furthermore, metabarcoding identified greater OTU diversity than expected within Diploschistes muscorum, Trapeliopsis bisorediata, and Trapeliopsis steppica . Our results suggest that metabarcoding alone or combined with visual methods could be a useful approach for monitoring biocrust lichen communities and their response to disturbance, invasion, and potential restoration.

Washington↗

Occurrence, fate, and transport of aerially applied herbicides to control invasive buffelgrass within Saguaro National Park Rincon Mountain District, Arizona, 2015–18

The spread of the invasive and fire-adapted buffelgrass ( Cenchrus ciliaris L.) threatens desert ecosystems by competing for resources, increasing fuel loads, and creating wildfire connectivity. The Rincon Mountain District of Saguaro National Park addressed this natural resource threat with the use of glyphosate-based herbicides (GBHs). In 2010, the Rincon Mountain District initiated an aerial restoration plan to control dense buffelgrass patches in remote areas and implemented a trial project to evaluate the effects of aerial restoration techniques that included the helicopter application of GBHs. In 2014, more than 250 acres of buffelgrass in the Rincon Mountain District were treated with the aerial application of GBHs. This widespread aerial application of GBHs continued through 2018, but the potential transport and effects to aquatic ecosystems were unknown. In 2015–18, the U.S. Geological Survey, in cooperation with the National Park Service, studied the occurrence, distribution, fate, and transport of glyphosate in surface water and sediments derived from areas that were treated during past and current aerial herbicide applications. Three watersheds, treated with different regimens of GBHs, were sampled for glyphosate and the primary metabolite of glyphosate, aminomethylphosphonic acid (AMPA), during various hydrologic flow conditions. Water and aquatic sediment were collected from three watersheds, each in a different stage of application during the U.S. Geological Survey study. The unnamed watershed above the Loma Verde Trailhead referred to by the National Park Service as “Loma Verde canyon” had received no aerial treatment since 2014, whereas the Box Canyon watershed was aerially treated every year beginning in 2014. The Madrona Canyon watershed was first sprayed in 2016 and aerial application continued once a year though the entirety of the study. In addition, terrestrial soil samples were sampled from areas sprayed to understand dissipation rates and herbicide transport via sediments washing away during rainfall runoff. The concentrations present in water and sediment samples were compared to ecological benchmarks and characterized within the context of the environmental conditions of the park setting. Of the 48 water samples collected and analyzed for glyphosate and AMPA, 10.4 percent and 14.6 percent were detected above the laboratory minimum detection limit, respectively. Mean water concentrations, calculated using specific statistical methods for non-detects, were equal to the laboratory minimum detection limit of 0.02 microgram per liter for samples collected in all the watersheds. In aquatic sediments, glyphosate and AMPA were detected in 10.7 and 25.0 percent of the samples, whereas 89.5 and 100 percent of the terrestrial soil samples had detections for glyphosate and AMPA, respectively. Mean aquatic sediment concentrations were 1.13 and 4.42 micrograms per kilogram (μg/kg) for glyphosate and AMPA, respectively. Mean terrestrial soil concentrations were orders of magnitude greater than water and aquatic sediment with concentrations of 678 μg/kg for AMPA and 1,240 μg/kg for glyphosate. Hours after glyphosate-based herbicide was applied, the concentrations of glyphosate and AMPA were present in terrestrial soil samples near or above the laboratory maximum detection limit of 5,000 μg/kg. The Box Canyon watershed was the most intensively treated watershed in terms of total land area treated, total amount of GBH applied, and number of years treated. The frequent and large volume of treatment resulted in the highest number of detections of glyphosate and AMPA in water (3 and 7 detections, respectively) and in aquatic sediment (2 and 6 detections, respectively) samples. In comparison, the other two watersheds had two or fewer detections for glyphosate and AMPA in water and aquatic sediment. Glyphosate detected in pools was associated with increased rainfall closer in time to the last herbicide treatment. Glyphosate and AMPA concentration ratios above one, along with stable-isotope and tritium results, indicated that runoff processes were the primary transport mechanism for the two compounds when found in streams and pools rather than subsurface recharge or deeper flow paths. One pool in a small tributary of Box Canyon consistently had detections of glyphosate and AMPA in aquatic sediments, but these frequent concentrations were likely related to the intensive application upstream, near the steep terrain above the head of the channel that supplies the downstream pool. Intense flows during summer rainfall events move treated sediments into this channel where vegetation and the incised bedrock banks of the pool retained those sediments and ultimately led to frequent detections of both compounds. Isotope results in most of the pools and tinajas indicated that the water source had residence time representative of recently recharged waters, on the order of years. No water concentrations exceeded published criteria for human health or aquatic life. Median and maximum glyphosate and AMPA water concentrations were lower than those reported in other national assessments, but maximum concentrations observed in individual runoff samples were higher than median concentrations measured in the national assessments. A similar finding was observed with aquatic sediment concentrations measured in the Rincon Mountain District. Results from the study were compared and assessed in the context of other studies examining GBHs and their effects on amphibians, fish, and macroinvertebrates. This comparison was used to generalize the potential risk to aquatic species similar to those species in the Rincon Mountain District. Concentrations of published effect levels were several orders of magnitude greater than the highest concentration detected in water at the Rincon Mountain District. Most published studies evaluate acute and chronic toxicity for glyphosate and GBHs, and these criteria may not be representative of environmental conditions in the Rincon Mountain District. The classic lethal dose studies conducted in a controlled laboratory setting may not be suitable for comparison to the longer, variable, low-dose exposure conditions in the pools and tinajas in the Rincon Mountain District. However, this study determined that the fate of GBHs transported from treated areas to potential aquatic habitat was highly variable in occurrence, timing, and concentrations. This variability in glyphosate concentrations was too high, and the potential exposure was determined to be far too complex to directly compare with the results from controlled studies. This study provides the first information collected on GBHs used to control invasive buffelgrass in a remote, mountainous, and semiarid setting. The information about the transport and fate of herbicide application near aquatic habitat will help to inform managers about the broader ecosystem implications and provide useful information to other agencies implementing buffelgrass remediation strategies near aquatic habitat.

Arizona↗

Measuring groundwater-surface water interaction and its effect on wetland stream benthic productivity, Trout Lake watershed, northern Wisconsin, USA

Measurements of groundwater-surface water exchange at three wetland stream sites were related to patterns in benthic productivity as part of the US Geological Survey's Northern Temperate Lakes-Water, Energy and Biogeochemical Budgets (NTL-WEBB) project. The three sites included one high groundwater discharge (HGD) site, one weak groundwater discharge (WGD) site, and one groundwater recharge (GR) site. Large upward vertical gradients at the HGD site were associated with smallest variation in head below the stream and fewest gradient reversals between the stream and the groundwater beneath the stream, and the stream and the adjacent streambank. The WGD site had the highest number of gradient reversals reflecting the average condition being closest to zero vertical gradient. The duration of groundwater discharge events was related to the amount of discharge, where the HGD site had the longest strong-gradient durations for both horizontal and vertical groundwater flow. Strong groundwater discharge also controlled transient temperature and chemical hyporheic conditions by limiting the infiltration of surface water. Groundwater-surface water interactions were related to highly significant patterns in benthic invertebrate abundance, taxonomic richness, and periphyton respiration. The HGD site abundance was 35% greater than in the WGD site and 53% greater than the GR site; richness and periphyton respiration were also significantly greater (p???0.001, 31 and 44%, respectively) in the HGD site than in the GR site. The WGD site had greater abundance (27%), richness (19%) and periphyton respiration (39%) than the GR site. This work suggests groundwater-surface water interactions can strongly influence benthic productivity, thus emphasizing the importance of quantitative hydrology for management of wetland-stream ecosystems in the northern temperate regions. ?? 2005 Elsevier B.V. All rights reserved.

Conference Paper↗

Spectral mixture analysis for surveillance of harmful algal blooms (SMASH): A field-, laboratory-, and satellite-based approach to identifying cyanobacteria genera from remotely sensed data

Algal blooms around the world are increasing in frequency and severity, often with the possibility of adverse effects on human and ecosystem health. The health and economic impacts associated with harmful algal blooms, or HABs, provide compelling rationale for developing new methods for monitoring these events via remote sensing. Although concentrations of chlorophyll- a and key pigments like phycocyanin are routinely estimated from satellite images and used to infer algal or cyanobacterial cell counts, current methods are unable to provide information on the taxonomic composition of a bloom. This study introduced a new approach capable of differentiating among genera based on their reflectance characteristics: Spectral Mixture Analysis for Surveillance of HABs, or SMASH. The foundation of SMASH is a multiple endmember spectral mixture analysis (MESMA) algorithm that takes a library of cyanobacteria endmembers and a hyperspectral image as input and estimates the fractional abundance of each genus, plus water, on a per-pixel basis. Importantly, we assume that the water column consists of only pure water and cyanobacteria, implying that our linear spectral unmixing models do not account for other optically active constituents such as suspended sediment and colored dissolved organic matter (CDOM). We used reflectance spectra for 12 genera measured under a microscope to populate an algal spectral library and applied the SMASH workflow to satellite images from four waterbodies across the United States. Normalized spectral separability scores indicated that the 12 genera were distinct from one another and the MESMA algorithm reproduced known input fractions for simulated mixtures that included all pairwise combinations of genera and water. We used Upper Klamath Lake as an example to illustrate data products generated via SMASH: maps of the normalized difference chlorophyll index and cyanobacterial index, a MESMA-based classification of algal genera, fraction images for each endmember, and a root mean square error (RMSE) image that summarizes uncertainty. For Upper Klamath Lake, these outputs highlighted a complex algal bloom featuring several genera, primarily Aphanizomenon , and intricate spatial patterns associated with gyres. The maximum RMSE constraint imposed on the MESMA algorithm provided a means of avoiding false positive detection of genera not present in a waterbody but must not be set so low as to leave much of an image unclassified in cases where genera included in the library are present. Comparison of endmember fractions with relative biovolumes calculated from field samples indicated that taxonomic information from SMASH was consistent with field observations. For example, the algorithm successfully identified Microcystis in Owasco Lake but avoided misclassifying Asterionella , a genus not yet included in our library, in Detroit Lake. This proof-of-concept investigation demonstrates the potential of SMASH to enhance our understanding of algal blooms, particularly with respect to their spatial and temporal dynamics.

New York, Oregon, Texas↗

Understanding how microbiomes influence the systems they inhabit

Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in the absence of a robust conceptual framework and reported without elucidating the underlying causal mechanisms. The reliance on correlative approaches limits the potential to expand the inference of a single relationship to additional systems and advance the field. We propose that research focused on how microbiomes influence the systems they inhabit should work within a common framework and target known microbial processes that contribute to the system-level processes of interest. Here we identify three distinct categories of microbiome characteristics (microbial processes, microbial community properties, and microbial membership) and propose a framework to empirically link each of these categories to each other and the broader system level processes they affect. We posit that it is particularly important to distinguish microbial community properties that can be predicted from constituent taxa (community aggregated traits) from and those properties that are currently unable to be predicted from constituent taxa (emergent properties). Existing methods in microbial ecology can be applied to more explicitly elucidate properties within each of these categories and connect these three categories of microbial characteristics with each other. We view this proposed framework, gleaned from a breadth of research on environmental microbiomes and ecosystem processes, as a promising pathway with the potential to advance discovery and understanding across a broad range of microbiome science.

Nature Microbiology↗

Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor

Population structure, distribution, abundance, and dispersal arguably underpin the entire field of animal ecology, with consequences for regional species persistence, and provision of ecosystem services. Divergent migration behaviours among individuals or among populations is an important aspect of the ecology of highly-mobile animals, allowing populations to exploit spatially- or temporally-distributed food and space resources. This study investigated the spatial ecology of lake sturgeon ( Acipenser fulvescens ) within the barrier free Huron-Erie Corridor (HEC), which connects Lake Huron and Lake Erie of the North American Laurentian Great Lakes. Over six years (2011 – 2016), movements of 268 lake sturgeon in the HEC were continuously monitored across the Great Lakes using acoustic telemetry (10 yr battery life acoustic transmitters). Five distinct migration behaviours were identified with hierarchical cluster analysis, based on the phenology and duration of river and lake use. Lake sturgeon in the HEC were found to contain a high level of intraspecific divergent migration, including partial migration with the existence of residents. Specific behaviours included year-round river residency and multiple lake-migrant behaviours that involved movements between lakes and rivers. Over 85% of individuals were assign to migration behaviours as movements were consistently repeated over the study, which suggested migration behaviours were consistent and persistent in lake sturgeon. Differential use of specific rivers or lakes by acoustic-tagged lake sturgeon further subdivided individuals into 14 “contingents” (spatiotemporally segregated subgroups). Contingents associated with one river (Detroit or St. Clair) were rarely detected in the other river, which confirmed that lake sturgeon in the Detroit and St. Clair represent two semi-independent populations that could require separate management consideration for their conservation. The distribution of migration behaviours did not vary between populations, sexes, body size, or among release locations, which indicated that intrapopulation variability in migratory behaviour is a general feature of the spatial ecology of lake sturgeon in un-fragmented landscapes.

Michigan, Ontario↗

The importance of method selection when estimating diet composition with quantitative fatty acid signature analysis

Quantitative fatty acid signature analysis (QFASA) is a common method of estimating the composition of prey species in the diets of consumers from polar and temperate ecosystems in which lipids are an important source of energy. A key characteristic of QFASA is that the large number of fatty acids that typically comprise lipids permits the dietary contributions of a correspondingly large number of prey types to be estimated. Several modifications to the original QFASA methods have been suggested in the literature and a significant extension of the original model published in 2017 allows simultaneous estimation of both diet proportions and calibration coefficients, which are metabolic constants in the model whose values must otherwise be estimated in independent feeding experiments. However, comparisons of diet estimates obtained using different estimation options have been limited. QFASA has been used to estimate the diet composition of several polar bear ( Ursus maritimus ) subpopulations, including the Southern Beaufort Sea (SBS) subpopulation. Prior QFASA estimates of SBS polar bear diet composition have most often been obtained using variations of the original QFASA model. We investigated the influence of variations in QFASA analytical methods on diet estimates by re-estimating the diet composition of polar bears from the Alaska portion of the SBS using three different methods and found that differences among the three sets of estimates were substantial. Our results illustrate how important the careful and deliberate selection of QFASA methods can be and we provide some guidance on techniques one might use to evaluate options.

PLoS ONE↗

Bald eagles and sea otters in the Aleutian Archipelago: indirect effects of trophic cascades.

Because sea otters ( Enhydra lutris ) exert a wide array of direct and indirect effects on coastal marine ecosystems throughout their geographic range, we investigated the potential influence of sea otters on the ecology of Bald Eagles ( Haliaeetus leucocephalus ) in the Aleutian Islands, Alaska, USA. We studied the diets, productivity, and density of breeding Bald Eagles on four islands during 1993–1994 and 2000–2002, when sea otters were abundant and scarce, respectively. Bald Eagles depend on nearshore marine communities for most of their prey in this ecosystem, so we predicted that the recent decline in otter populations would have an indirect negative effect on diets and demography of Bald Eagles. Contrary to our predictions, we found no effects on density of breeding pairs on four islands from 1993–1994 to 2000–2002. In contrast, diets and diet diversity of Bald Eagles changed considerably between the two time periods, likely reflecting a change in prey availability resulting from the increase and subsequent decline in sea otter populations. The frequency of sea otter pups, rock greenling ( Hexagammus lagocephalus ), and smooth lumpsuckers ( Aptocyclus ventricosus ) in the eagle's diet declined with corresponding increases in Rock Ptarmigan ( Lagopus mutus ), Glaucous-winged Gulls ( Larus glaucescens ), Atka mackerel ( Pleurogrammus monopterygius ), and various species of seabirds during the period of the recent otter population decline. Breeding success and productivity of Bald Eagles also increased during this time period, which may be due to the higher nutritional quality of avian prey consumed in later years. Our results provide further evidence of the wide-ranging indirect effects of sea otter predation on nearshore marine communities and another apex predator, the Bald Eagle. Although the indirect effects of sea otters are widely known, this example is unique because the food-web pathway transcended five species and several trophic levels in linking one apex predator to another.

Ecology↗

Land-Cover Change in the East Central Texas Plains, 1973-2000

Project Background: The Geographic Analysis and Monitoring (GAM) Program of the U.S. Geological Survey (USGS) Land Cover Trends project is focused on understanding the rates, trends, causes, and consequences of contemporary U.S. land-use and land-cover change. The objectives of the study are to: (1) develop a comprehensive methodology for using sampling and change analysis techniques and Landsat Multispectral Scanner (MSS) and Thematic Mapper (TM) data for measuring regional land-cover change across the United States, (2) characterize the types, rates and temporal variability of change for a 30-year period, (3) document regional driving forces and consequences of change, and (4) prepare a national synthesis of land-cover change (Loveland and others, 1999). Using the 1999 Environmental Protection Agency (EPA) Level III ecoregions derived from Omernik (1987) as the geographic framework, geospatial data collected between 1973 and 2000 were processed and analyzed to characterize ecosystem responses to land-use changes. The 27-year study period was divided into five temporal periods: 1973-1980, 1980-1986, 1986-1992, 1992-2000, and 1973-2000. General land-cover classes such as water, developed, grassland/shrubland, and agriculture for these periods were interpreted from Landsat MSS, TM, and Enhanced Thematic Mapper Plus imagery to categorize land-cover change and evaluate using a modified Anderson Land-Use Land-Cover Classification System for image interpretation. The interpretation of these land-cover classes complement the program objective of looking at land-use change with cover serving as a surrogate for land use. The land-cover change rates are estimated using a stratified, random sampling of 10-kilometer (km) by 10-km blocks allocated within each ecoregion. For each sample block, satellite images are used to interpret land-cover change for the five time periods previously mentioned. Additionally, historical aerial photographs from similar timeframes and other ancillary data such as census statistics and published literature are used. The sample block data are then incorporated into statistical analyses to generate an overall change matrix for the ecoregion. For example, the scalar statistics can show the spatial extent of change per cover type with time, as well as the land-cover transformations from one land-cover type to another type occurring with time. Field data of the sample blocks include direct measurements of land cover, particularly ground-survey data collected for training and validation of image classifications (Loveland and others, 2002). The field experience allows for additional observations of the character and condition of the landscape, assistance in sample block interpretation, ground truthing of Landsat imagery, and helps determine the driving forces of change identified in an ecoregion. Management and maintenance of field data, beyond initial use for training and validation of image classifications, is important as improved methods for image classification are developed, and as present-day data become part of the historical legacy for which studies of land-cover change in the future will depend (Loveland and others, 2002). The results illustrate that there is no single profile of land-cover change; instead, there is significant geographic variability that results from land uses within ecoregions continuously adapting to the resource potential created by various environmental, technological, and socioeconomic factors.

Open-File Report↗

Survey of bats on Columbia National Wildlife Refuge, Washington, December 2011-April 2012

Bats are diverse and abundant in many ecosystems worldwide. They perform important ecosystem functions, particularly by consuming large quantities of insects (Cleveland and others, 2006; Jones and others, 2009; Kuhn and others, 2011). The importance of bats to biodiversity and to ecosystem integrity has been overlooked in many regions, largely because the challenges of detecting and studying these small, nocturnal mammals have rendered a paucity of information on matters as basic as species distribution and natural history attributes. Recently, concern for bats has arisen in response to recognition of large-scale threats, such as white-nosed syndrome (WNS; Turner and others, 2009; Frick and others, 2010) and mortality at wind energy facilities (Arnett and others, 2008), factors that are causing unprecedented population declines of bats (Boyles and others, 2011). WNS is a fungal disease that has killed more than 1 million cave-hibernating bats in eastern North America since being discovered in New York State in 2006 (U.S. Fish and Wildlife Service, 2012). WNS has spread rapidly from northeastern U.S., and as of August 2012 has been confirmed as far west as eastern Missouri(U.S. Fish and Wildlife Service, 2013). Given the rapid spread of WNS, there is concern that the disease may soon affect western bat populations. Hibernating bats are particularly vulnerable to the effects of WNS (Blehert and others, 2009). Refuges in eastern Washington, including the Mid-Columbia River National Wildlife Refuge Complex (MCRNWRC) and Little Pend Oreille National Wildlife Refuge, support many potential hibernacula. Sixteen species of bats potentially occur on these refuges, including one federally listed species of concern (Townsend’s big-eared bat [Corynorhinus townsendii]; see table 1 for scientific names of bats), and 12 species that are of conservation concern in Washington and Oregon (table 1). However, little is known about bats on these refuges because few surveys have been done, and none have been done during winter. Refuge biologists are lacking even the most basic information, such as species presence, and location and status of hibernacula. In order to assess vulnerability and develop a strategy for management of WNS, refuge managers need to know where bats are hibernating, and which species are using each hibernaculum. The goal of this project was to provide information on the status of wintering bats to refuge biologists and managers in order to support decision-making that might minimize the threat of WNS in western bat populations. We conducted surveys of bat activity in winter and early spring as an initial step toward identifying bat species that may be over-wintering and locating potential hibernacula on these refuges. Our specific objectives were to identify bat species using the refuges, to identify areas of resident bat activity in autumn, winter, and early spring using acoustic bat detectors, and to try new methods for quick surveys of bat activity.

Oregon;Washington↗

Occurrence and Distribution of Pesticides in the St. Lucie River Watershed, South-Central Florida, 2000-01, Based on Enzyme-Linked Immunosorbent Assay (ELISA) Screening

The St. Lucie River watershed is a valuable estuarine ecosystem and resource in south-central Florida. The watershed has undergone extensive changes over the last century because of anthropogenic activities. These activities have resulted in a complex urban and agricultural drainage network that facilitates the transport of contaminants, including pesticides, to the primary canals and then to the estuary. Historical data indicate that aquatic life criteria for selected pesticides have been exceeded. To address this concern, a reconnaissance was conducted to assess the occurrence and distribution of selected pesticides within the St. Lucie River watershed. Numerous water samples were collected from 37 sites among various land-use categories (urban/built-up, citrus, cropland/pastureland, and inte-grated). Samples were collected at inflow points to primary canals (C-23, C-24, and C-44) and at control structures along these canals from October 2000 to September 2001. Samples were screened for four pesticide classes (triazines, chloroacetanilides, chlorophenoxy compounds, and organophosphates) by using Enzyme-Linked Immunosorbent Assay (ELISA) screening. A temporal distribution of pesticides within the watershed was made based on samples collected at the integrated sites during different rainfall events between October 2000 and September 2001. Triazines were detected in 32 percent of the samples collected at the integrated sites. Chloroacetanilides were detected in 60 percent of the samples collected at the integrated sites, with most detections occurring at one site. Chlorophenoxy compounds were detected in 17 percent of the samples collected at the integrated sites. Organophosphates were detected in only one sample. A spatial distribution and range of concentration of pesticides at the 37 sampling sites in the watershed were determined among land-use categories. Triazine concentrations ranged from highest to lowest in the citrus, urban/built-up, and integrated areas, respectively. The highest median triazine concentration was found in the cropland/pastureland area. Chloroacetanilide concentra-tions ranged from highest to lowest in the citrus, integrated, urban/built-up, and cropland/pastureland areas, respectively. Chlorophenoxy compound concentrations ranged from highest to lowest in the urban/built-up, integrated, citrus, and cropland/pastureland areas, respectively. The maximum concentrations of triazines, chloroacetanilides, and chlorophenoxy compounds were 0.63, 1.0, and 14 micrograms per liter, respectively. Organophosphate was detected once at an integrated site at a concentration of 0.20 microgram per liter. Currently, the U.S. Environmental Protection Agency has no aquatic life guidelines for atrazine and metolachlor. However, assuming that all triazine and metolachlor concentrations from ELISA and gas chromatography/mass spectrometry (GC/MS) analyses were the result of atrazine and metolachlor detections, no concentrations exceeded the Canadian aquatic life guidelines for atrazine and metolachlor. One organophosphate detection (0.2 microgram per liter) did exceed the U.S. Environmental Protection Agency aquatic life guideline for chlorpyrifos. The deethylatrazine/atrazine ratio (DAR) is an important indicator of atrazine transport in the environment. The DAR ranged from 0.25 to 0.33, indicating that postapplication runoff was the most likely source of atrazine to the environment at the time of sampling. Deisopropylatrazine is a metabolite of atrazine and structurally similar compounds, such as simazine and cyanazine. The deisopropylatrazine/deethylatrazine ratio (D2R) is an indicator of nonpoint sources of deisopropylatrazine to the environment. The ratio ranged from 1 to 3 in this study, indicating simazine was an important source of deisopropylatrazine to the environment at the time of sampling, as opposed to atrazine alone. Confirmation analyses by GC/MS for triazines detected by ELISA indicated the presence of atrazine, simazine, deethylatrazine, and deisopropylatrazine. Metolachlor, however, or any of the pesticides for which the ELISA test is cross reactive (acetochlor, butachlor, propachlor, or alachlor) were not detected by GC/MS analysis. The chloroacetanilide detections may be the result of antibody cross reactivity with two metolachlor metabolites; namely, metolachlor ethane sulfonic acid (ESA) and metolachlor oxanilic acid (OA). Metalaxyl, a fungicide also used in the watershed, cross reacts with metolachlor antibodies at low concentrations. Quality assurance efforts included the collection of duplicate samples and equipment blanks for every 10 and 20 environmental samples collected, respectively. All equipment blank test results showed concentrations below the method detection limit (MDL) for triazines, chlorophenoxy compounds, and organophosphates. Chloroacetanilide concentrations ranged from the method detection limit of 0.05 to 0.07 microgram per liter. Further results indicated statistically significant differences between triazines by ELISA and atrazine by GC/MS when ELISA results are converted to the MDL. There was, however, no statistically significant difference between triazines determined by ELISA and atrazine determined by GC/MS when ELISA results were converted to one-half the MDL.

Florida↗

Coupling large-spatial scale larval dispersal modelling with barcoding to refine the amphi-Atlantic connectivity hypothesis in deep-sea seep mussels

In highly fragmented and relatively stable cold-seep ecosystems, species are expected to exhibit high migration rates and long-distance dispersal of long-lived pelagic larvae to maintain genetic integrity over their range. Accordingly, several species inhabiting cold seeps are widely distributed across the whole Atlantic Ocean, with low genetic divergence between metapopulations on both sides of the Atlantic Equatorial Belt (AEB, i.e. Barbados and African/European margins). Two hypotheses may explain such patterns: (i) the occurrence of present-day gene flow or (ii) incomplete lineage sorting due to large population sizes and low mutation rates. Here, we evaluated the first hypothesis using the cold seep mussels Gigantidas childressi, G. mauritanicus, Bathymodiolus heckerae and B. boomerang . We combined COI barcoding of 763 individuals with VIKING20X larval dispersal modelling at a large spatial scale not previously investigated. Population genetics supported the parallel evolution of Gigantidas and Bathymodiolus genera in the Atlantic Ocean and the occurrence of a 1-3 Million-year-old vicariance effect that isolated populations across the Caribbean Sea. Both population genetics and larval dispersal modelling suggested that contemporary gene flow and larval exchanges are possible across the AEB and the Caribbean Sea, although probably rare. When occurring, larval flow was eastward (AEB - only for B. boomerang ) or northward (Caribbean Sea - only for G. mauritanicus ). Caution is nevertheless required since we focused on only one mitochondrial gene, which may underestimate gene flow if a genetic barrier exists. Non-negligible genetic differentiation occurred between Barbados and African populations, so we could not discount the incomplete lineage sorting hypothesis. Larval dispersal modelling simulations supported the genetic findings along the American coast with high amounts of larval flow between the Gulf of Mexico (GoM) and the US Atlantic Margin, although the Blake Ridge population of B. heckerae appeared genetically differentiated. Overall, our results suggest that additional studies using nuclear genetic markers and population genomics approaches are needed to clarify the evolutionary history of the Atlantic bathymodioline mussels and to distinguish between ongoing and past processes.

Frontiers in Marine Science↗

Vegetation, fuels, and fire-behavior responses to linear fuel-break treatments in and around burned sagebrush steppe: Are we breaking the grass-fire cycle?

Background Linear fuel breaks are being implemented to moderate fire behavior and improve wildfire containment in semiarid landscapes such as the sagebrush steppe of North America, where extensive losses in perennial vegetation and ecosystem functioning are resulting from invasion by exotic annual grasses (EAGs) that foster large and recurrent wildfires. However, fuel-break construction can also pose EAG invasion risks, which must be weighed against the intended fire-moderation benefits of the treatments. We investigated how shrub reductions (mowing, cutting), pre-emergent EAG-herbicides, and/or drill seedings of fire-resistant perennial bunchgrasses (PBGs) recently applied to create a large fuel-break system affected native and exotic plant abundances and their associated fuel loading and predicted fire behavior. Results In heavily EAG-invaded areas, herbicides reduced EAG and total herbaceous cover without affecting PBGs for 2–3 years and reduced predicted fire behavior for 1 year (from the Fuel Characteristic Classification System). However, surviving post-herbicide EAG cover was still > 30%, which was sufficient fuel to exceed the conventional 1.2-m-flame length (FL) threshold for attempting wildfire suppression with hand tools. In less invaded shrubland, shrub reduction treatments largely reduced shrub cover and height by ~ half without increasing EAGs, but then redistributed the wood to ground level and increased total herbaceous cover. Herbicides and/or drill seeding after shrub reductions did not affect EAG cover, although drill seedings increased PBG cover and exotic forbs (e.g., Russian thistle). Fire behavior was predicted to be moderated in only one of the many yearly observations of the various shrub-reduction treatment combinations. Over all treatments and years, FLs were predicted to exceed 1.2 m in 13% of simulations under average (11 km h −1 ) or high (47 km h −1 ) wind speed conditions and exceed the 3.4-m threshold for uncontrollable fire in 11% of simulations under high-wind speeds only. Conclusions Predicted fire-moderation benefits over the first 4 years of fuel break implementation were modest and variable, but, generally, increases in EAGs and their associated fire risks were not observed. Nonetheless, ancillary evidence from shrublands would suggest that treatment-induced shifts from shrub to herbaceous fuel dominance are expected to improve conditions for active fire suppression in ways not readily represented in available fire models.

Idaho, Oregon↗

San Francisco Bay/delta regional monitoring program plankton and water quality pilot study, 1993, in 1993 Annual Report, San Francisco Estuary Regional Monitoring Program for Trace Substances: San Francisco Estuary Institute

The pilot program described here is motivated by a fundamental principle of the Regional Monitoring Strategy, namely &ldquo;...the development of data that will provide information on status and trends in the Estuary.&rdquo; As pointed out in the Strategy, knowledge of status and trends serves two primary purposes: (1) to become aware of or anticipate deleterious conditions in the Estuary, and (2) to assess the effectiveness of management actions. This program addresses these two purposes by focusing on aquatic resources, one of the five key management issues identified by the Comprehensive Conservation and Management Plan and central to the Regional Monitoring Strategy. It also bears on at least two of the other management issues - pollutants and water use. A regional monitoring program must cover many types of resources, including pelagic and benthic channel habitat, shoal habitat, wetlands, river channels, sloughs, and small bays and harbors. This particular program centers on the pelagic channel habitat. However, because of the intimate connection between channel habitat and many or most of these other habitats, channel measurements reflect to some extent the status of and trends in other resource types as well. A primary aim of this program is to provide a high-resolution description of critical aspects of habitat quality, which can be used along with other information (1) to determine the suitability of habitat for aquatic resources; (2) to monitor responsiveness of the habitat to freshwater flow variability; and (3) to provide a context for understanding pollutant distributions. In a single transect, measurements are made throughout the water column at up to 37 stations to define physical (salinity, temperature, suspended particulate matter, and light penetration), chemical (dissolved oxygen) and biological (chlorophyll a ) characteristics that influence both chemical and biological reactions. A second aim of the program is to investigate planktonic indicators of ecosystem structure and function. Phytoplankton production is the major single source of energy for the San Francisco Bay food web. Our measurements of chlorophyll and light penetration can be used to provide an estimate of this production, and therefore the availability of food for organisms at higher trophic levels. Phytoplankton community composition at the species level, which can be a sensitive indicator of habitat change, is also a standard component of this program. Community composition data enable detection of species known to be responsible for harmful or nuisance algal blooms. In 1993, two other indicators were also evaluated, photosynthetic parameters and water column respiration . Photosynthetic parameters partially characterize the physiological state of the phytoplankton and may provide indirect evidence of nutrient deficiency or the effects of pollutants. Water column respiration serves as a simple integrated measure of organic matter metabolism by the plankton, including bacteria, phytoplankton, and microzooplankton. It therefore reflects the total supply of organic matter, whether from photosynthesis, tidal marsh efflux, point sources, or upstream in the Delta. These biological indicators therefore contain much information about the flow of energy into the food web.

California↗

Arbuscular mycorrhizal assemblages in native plant roots change in the presence of invasive exotic grasses

Plant invasions have the potential to significantly alter soil microbial communities, given their often considerable aboveground effects. We examined how plant invasions altered the arbuscular mycorrhizal fungi of native plant roots in a grassland site in California and one in Utah. In the California site, we used experimentally created plant communities composed of exotic (Avena barbata, Bromus hordeaceus) and native (Nassella pulchra, Lupinus bicolor) monocultures and mixtures. In the Utah semi-arid grassland, we took advantage of invasion by Bromus tectorum into long-term plots dominated by either of two native grasses, Hilaria jamesii or Stipa hymenoides. Arbuscular mycorrhizal fungi colonizing roots were characterized with PCR amplification of the ITS region, cloning, and sequencing. We saw a significant effect of the presence of exotic grasses on the diversity of mycorrhizal fungi colonizing native plant roots. In the three native grasses, richness of mycorrhizal fungi decreased; in the native forb at the California site, the number of fungal RFLP patterns increased in the presence of exotics. The exotic grasses also caused the composition of the mycorrhizal community in native roots to shift dramatically both in California, with turnover of Glomus spp., and Utah, with replacement of Glomus spp. by apparently non-mycorrhizal fungi. Invading plants may be able to influence the network of mycorrhizal fungi in soil that is available to natives through either earlier root activity or differential carbon provision compared to natives. Alteration of the soil microbial community by plant invasion can provide a mechanism for both successful invasion and the resulting effects of invaders on the ecosystem. ?? Springer 2006.

Plant and Soil↗

Drought and nutrient pollution produce multiple interactive effects in stream ecosystems

Drought and nutrient pollution can affect the dynamics of stream ecosystems in diverse ways. While the individual effects of both stressors are broadly examined in the literature, we still know relatively little about if and how these stressors interact. Here, we performed a mesocosm experiment that explores the compounded effects of seasonal drought via water withdrawals and nutrient pollution (1.0 mg/L of N and 0.1 mg/L of P) on a subset of Ozark stream community fauna and ecosystem processes. We observed biological responses to individual stressors as well as both synergistic and antagonistic stressor interactions. We found that drying negatively affected periphyton assemblages, macroinvertebrate colonization, and leaf litter decomposition in shallow habitats. However, in deep habitats, drought-based increases in fish density caused trophic cascades that released algal communities from grazing pressures; while nutrient enrichment caused bottom-up cascades that influenced periphyton variables and crayfish growth rates. Finally, the combined effects of drought and nutrient enrichment interacted antagonistically to increase survival in longear sunfish; and stressors acted synergistically on grazers causing a trophic cascade that increased periphyton variables. Because stressors can directly and indirectly impact biota—and that the same stressor pairing can act differentially on various portions of the community simultaneously—our broad understanding of individual stressors might not adequately inform our knowledge of multi-stressor systems.

PLoS ONE↗