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USGS2012

Differences in survival and growth in hatchery and stream environments, and in maturation of residuls in a stream, between progeny of hatchery and wild steelhead (Study sites: Brushy Fork Creek and Dworshak Hatchery; Stocks:Dworshak hatchery and Fish Creek wild; Year classes: 1992 and 1993)

Freshwater survival in hatchery and natural rearing environments was compared between progeny of hatchery (H) and wild (W) steelhead Oncorhynchus mykiss from the Clearwater River drainage in Idaho. Adults from Dworshak National Fish Hatchery and wild adults from Fish Creek fish were artificially spawned, and their progeny were genetically marked at the PEPA allozyme locus and released together as unfed fry in production facilities at the hatchery and in Brushy Fork Creek, also in the Clearwater River drainage, in a common garden design. Survival was higher for H than for W progeny at the hatchery but lower for H than for W progeny in Brushy Fork, indicating reduced fitness of the hatchery population for natural rearing and suggesting domestication as the cause. Survival at the hatchery was lower than is typical due to disease outbreaks. Survival of the first year-class of experimental fish to smolt release was only 18%. Survival of H fish was 3.8 times that of W fish under these poor survival conditions. All fish from the second year-class died halfway through the scheduled 10 month rearing period. Survival of H fish was 5.2 times that of W fish to when 1% of the initial fry were still alive indicating that W fish succumbed to the epizootic sooner than did H fish. Emigrants from the Brushy Fork study reach were sampled for three years and fish residing in the study reach were sampled for six years following fry release. Most emigrants were one or two years old and too small to be smolts (mean fork length at age-2 = 93 mm). Survival in Brushy Fork was lower for H than for W fish of the first year-class. Survival of the second year-class was higher for H than for W fish during the first two months in the stream but was lower for H than for W fish thereafter, and net survival from release to ages 3 and older was also lower for H than for W fish if our emigrant samples were representative (periods of inoperative emigrant traps prevented certainty about this). Differences between progeny groups were also found for growth (H>W) and condition (H>W) in the hatchery and downstream migration success of hatchery-reared fish after release (H>W), and for growth (H<W for one year-class; H>W for the other), condition (H>W), downstream dispersal (H>W for one year-class; H=W for the other), and maturation of residuals (ovaries weight was greater for H than for W females at ages 4 and 5; testes weight was less for H than for W age-3 males of one year-class) in Brushy Fork. A thunderstorm-induced power outage interrupted flow to the incubation trays at the hatchery and compromised a major tenet of the common garden design for the second year-class, possibly contributing to the inconsistency in relative survivals in Brushy Fork between year-classes. The storm caused the incubation environment to differ between the stocks as a result of reduced oxygen levels and substantially higher densities for H alevins. This difference was illustrated by a 55% loss for H fish during the event, about twice that for W fish.

Idaho↗

USGS2005

Quarantine of Aeromonas salmonicida-harboring ebonyshell mussels (Fusconaia ebena) prevents transmission of the pathogen to brook trout (Salvelinus fontinalis)

Furunculosis, caused by the bacterium Aeromonas salmonicida , was artificially induced in brook trout ( Salvelinus fontinalis ) in an experimental tank. Ebonyshells ( Fusconaia ebena ) were placed to cohabit with these fish to acquire the pathogen through siphoning. After 2 wk of cohabitation, 10 of the mussels were assayed by bacterial culture and all were found to harbor A. salmonicida . The mean cell count from soft tissue homogenates was 1.84 × 10 5 cfu/g, which comprised an average 14.41% of the total bacteria isolated from tissues. From the fluids, a mean of 2.84 × 10 5 A. salmonicida cfu/mL was isolated, which comprised an average of 17.29% of the total bacterial flora. The mussels were removed from the cohabitation tank and distributed equally among five previously disinfected tanks, 35 per tank. The F. ebena in each tank were allowed to depurate A. salmonicida for various durations: 1, 5, 10, 15 or 30 days. After each group had depurated for their assigned time, 10 were assayed for bacteria, tank water was tested, and 20 pathogen-free bioindicator brook trout were added to cohabit with the remaining mussels. Depuration was considered successful if A. salmonicida was not isolated from tank water or the mussels, and there was no infection or mortality to bioindicator fish. After 1 day of depuration, A. salmonicida was not isolated from the soft tissues; however, it was isolated from one of the paired fluids (10% prevalence). The tank water tested positive, and the bioindicator fish became infected and died. From the 5-day depuration group, A. salmonicida was not isolated from soft tissues, but was isolated from three fluids (30%; mean = 1.56 × 10 2 cfu/mL). Tank water from the 5-day group was negative, and there was no mortality among the bioindicator fish. However, A. salmonicida was isolated from 2 of 20 fish at the end of the 14-day observation period. One F. ebena fluid sample was positive for A. salmonicida from the 10-day depuration group, but none of the soft tissue homogenates. The pathogen was not isolated from 10-day tank water, but there was a 30% cumulative mortality to the bioindicator fish. Aeromonas salmonicida was not isolated from any of the soft tissue homogenates, fluids or tank water from the 15 day or 30 day depuration groups, and the bioindicator fish remained pathogen- and disease-free. Study results showed that the F. ebena were harboring a high A. salmonicida cell load going into depuration, but at 15 days and beyond, the pathogen had been depurated to the extent that the mussels did not serve as pathogen vectors.

Journal of Shellfish Research↗

USGS2012

Effects of a drawdown on plant communities in a freshwater impoundment at Lacassine National Wildlife Refuge, Louisiana

Disturbance is an important natural process in the creation and maintenance of wetlands. Water depth manipulation and prescribed fire are two types of disturbance commonly used by humans to influence vegetation succession and composition in wetlands with the intention of improving wildlife habitat value. A 6,475-hectare (ha) impoundment was constructed in 1943 on Lacassine National Wildlife Refuge in southwest Louisiana to create freshwater wetlands as wintering waterfowl habitat. Ten years after construction of the impoundment, called Lacassine pool, was completed, refuge staff began expressing concerns about increasing emergent vegetation cover, organic matter accumulation, and decreasing area of open water within the pool. Because the presence of permanent standing water impedes actions that can address these concerns, a small impoundment within the pool where it was possible to manipulate water depth was created. The 283-ha subimpoundment called Unit D was constructed in 1989. Water was pumped from Unit D in 1990, and the unit was permanently reflooded about 3 years later. Four prescribed fires were applied during the drawdown. A study was initiated in 1990 to investigate the effect of the experimental drawdown on vegetation and soils in Unit D. Four plant community types were described, and cores were collected to measure the depth of the soil organic layer. A second study of Unit D was conducted in 1997, 4 years after the unit was reflooded, by using the same plots and similar sampling methods. This report presents an analysis and synthesis of the data from the two studies and provides an evaluation of the impact of the management techniques applied. We found that plant community characteristics often differed among the four communities and varied with time. Species richness increased in two of the communities, and total aboveground biomass increased in all four during the drawdown. These changes, however, did not persist when Unit D was reflooded; by 1997, species richness and aboveground biomass were equivalent to values before the drawdown. The change in waterfowl food value of the plant communities during the drawdown varied; it did not change in two communities, increased in one, and decreased in one. A consistent pattern noted was that waterfowl food value was higher in communities that contained open water than in those dominated by emergent plants, both soon after the drawdown was initiated in Unit D and 4 years after reflooding. A reduction in depth of the soil organic layer became apparent 20 months after drawdown was initiated, and this reduction persisted in 1997, 4 years after reflooding. A separate 2003 study on soil characteristics in Lacassine pool found that the depth to the clay layer was lower in Unit D than in the rest of the pool. We were not able to establish a cause-and-effect relation between any changes noted and the fact water levels in the unit were drawn down because the initial study in 1990 did not include control plots. Changes in vegetation and soil organic layer depth identified in Unit D may have occurred in the surrounding Lacassine pool habitat as well. Similarly, we were unable to form any conclusions about the effect of the prescribed fire treatments because there was no information on which plots were burned. Because of the known relation between anaerobic soil conditions and reduced decomposition of organic matter, however, it is likely that the drawdown in Unit D resulted in an increased decomposition rate and a reduction in the depth of the soil organic layer.

Louisiana↗

USGS1993

Field observations, preliminary model analysis, and aquifer thermal efficiency

In May 1980, the University of Minnesota began a project to evaluate the feasibility of storing heated (150 degrees Celsius (°C) water in the deep (180 to 240 meters (m)) Franconia-Ironton-Galesville aquifer and later recovering it for space heating. The Aquifer Thermal-Energy Storage (ATES) system was a doublet-well design in which the injection and withdrawal wells were spaced approximately 250 m apart. High-temperature water from the university's steam-generation facilities supplied heat for injection. Water was pumped from one of the wells through a heat exchanger, where heat was added or removed. Water then was injected back into the aquifer through the other well. The experimental plan for testing the ATES system consisted of a series of short-term hot-water injection, storage, and withdrawal cycles. Each cycle was 24 days long, and each injection, storage, and withdrawal step of the cycle was 8 days. The Franconia-Ironton-Galesville aquifer is a consolidated sandstone, approximately 60 m thick, the top of which is approximately 180 m below the land surface. It is confined above by the St. Lawrence Formation a dolomitic sandstone 8 m thick and below by the Eau Claire Formation a shale 30 m thick. Initial hydraulic testing with inflatable packers indicated that the aquifer has four hydraulic zones with distinctly different values of relative horizontal hydraulic conductivity. The thickness of each zone was determined by correlating data from geophysical logs, core samples, and the inflatable-packer tests. A comprehensive network for data collection, storage, and analysis was designed to monitor temperature and pressure changes during the ATES test cycles. A total of 22 pressure transducers and 56 thermocouples monitored pressures and temperatures in the aquifer and in the upper and lower confining units. Temperature and pressure measurements were collected in observation well nests at distances of approximately 7 and 14 m from the production wells. All pressure and temperature data were transmitted through buried cables to a central data logger, where the measurements were viewed independently or stored on computer magnetic tape for later analysis. Interactive computer programs were available to display data stored on magnetic tapes as individual measurements or as plots of pressure and temperature versus time. Analyses of step-drawdown and constant-discharge aquifer tests indicate that the Franconia-Ironton-Galesville aquifer is anisotropic in the horizontal plane. Major and minor transmissivities are 101.5 and 44.6 m 2 /d (square meters per day), respectively, for the Ironton and Galesville Sandstones and 40.0 and 24.0 m 2 /d, respectively, for the upper part of the Franconia Formation. The average transmissivity of the entire Franconia-Ironton-Galesville aquifer is about 98 m 2 /d. Effective porosity ranges from 0.25 to 0.31, and the average storage coefficient is 4.5x10 -5 . Two computer models were constructed to simulate the movement of ground water and heat. The first was a nonisothermal, isotropic, single-phase, radial, ground-water flow and thermal-energy-transport model that was constructed to examine the sensitivity of model results to various hydraulic and thermal properties. The model also was used to study the potential for buoyancy flow within the aquifer and the effect of various cyclic injection and withdrawal schemes on the relative thermal efficiency of the aquifer. The second model was a threedimensional ground-water flow and thermal-energy-transport model that was constructed to incorporate the anisotropy of the aquifer. In the first model, the sensitivity analysis assumed 8 days of injection of 150°C water at 18.9 liters per second (L/s), 8 days of storage, and 8 days of withdrawal of hot water at 18.9 L/s. The analysis indicates that, for practical ranges of hydraulic and thermal properties, the ratio of horizontal to vertical hydraulic conductivity is the least important property and thermal dispersivity is the most important property used to compute temperature and aquifer thermal efficiency. Buoyancy flow was examined for several values of hydraulic conductivity and ratios of horizontal to vertical hydraulic conductivities. For the assumed base values of hydraulic and thermal properties, buoyancy flow was negligible. The greatest simulated buoyancy flow resulted from simulations in which horizontal hydraulic conductivity was increased to ten times the base value and in which the vertical hydraulic conductivity was set equal to the horizontal hydraulic conductivity. The effects of various injection and withdrawal rates and durations on computed values of aquifer relative-thermal efficiency and final well-bore temperature were studied for five 1-year hypothetical test cycles of injection and withdrawal. The least efficient scheme was 8 months injection of 150°C water at 18.9 L/s and 4 months of withdrawal of hot water at 18.9 L/s. The most efficient scheme was obtained with 6 months of injection of 150°C water at 18.9 L/s and 6 months of withdrawal of hot water at 37.8 L/s. The hypothetical simulations indicate that the calibrated model of the doublet-well system would be a valuable tool for use by the university in selecting a highly efficient system operation. In the second model, analytical solutions of anisotropic hydraulic flow around the doublet-well system were obtained to provide fluid-flux boundary conditions around the heat-injection well in three dimensions. This information simplified simulation of the doublet-well system because only the heat injection well needed to be simulated. This second model was calibrated with data from an 8-day ambienttemperature injection test at 18.9 L/s. Boundary-flux conditions were examined for nonisothermal conditions by simulating 8 days of injection of 150°C water at 18.9 L/s. Results of simulations using both models indicate that the fluxboundary conditions are adequate for simulations of short-term heatinjection testing.

Professional Paper↗

USGS2023

Sequestration and reoxidation of chromium in experimental microcosms

Groundwater containing hexavalent chromium, Cr(VI), downgradient from the Pacific Gas and Electric Company (PG&E) Hinkley compressor station in the Mojave Desert, 80 miles northeast of Los Angeles, California, is undergoing bioremediation using added ethanol as a reductant in a volume of the aquifer defined as the in situ reactive zone (IRZ). This treatment reduces Cr(VI) to trivalent chromium, Cr(III), which is rapidly sequestered by sorption to aquifer particle surfaces and by co-precipitation within iron (Fe) or manganese (Mn) bearing minerals forming in place as reduction proceeds. Successful mitigation of the Cr(VI) plume is projected to require 10–95 years, at which time bioremediation with ethanol will likely cease. This projection assumes that Cr(VI) removal is permanent and that no Cr(III) will oxidize back to Cr(VI) in the event of changing hydrologic conditions that may cause oxygen-rich water to re-enter the IRZ. Laboratory microcosm experiments were done to explore the process of reductive sequestration of Cr(VI) to Cr(III) and the potential for reoxidation of Cr(III) to Cr(VI). In reductive sequestration experiments, batch microcosms were prepared with aquifer materials collected from sites upgradient of the Cr(VI) regulatory plume. Control microcosms were prepared using Fe- and Mn-coated quartz sand. Unfiltered Mojave River groundwater containing an added tracer of isotopically labeled chromium-50 were reacted with microcosm materials for up to 2 years; during this time, bio-reduction was stimulated by repeated additions of diluted ethanol to maintain reduced conditions within appropriate ranges, avoiding sulfate reducing or methanogenic conditions as much as possible while mimicking field conditions. Analysis of chromium-50, Fe, and Mn obtained by sequential extraction from microcosms harvested (incubation terminated and microcosm contents analyzed) at various times showed that some aqueous chromium (Cr) was sorbed to particle surfaces within hours; reduction to Cr(III) and incorporation into amorphous and crystalline solid phases occurred during the next few months. Amorphous Cr-containing fractions included Fe and Mn hydroxides and organic matter. Ultimately, most of the chromium-50 tracer was present in the less reactive crystalline phase. However, Fe and Mn were broadly distributed at later stages of reduction, and both were spatially co-located with Cr on a micrometer (μm) scale. Solid-phase data collected using scanning electron microscopy with energy dispersive spectroscopy (SEM-EDS) and X-ray absorption spectroscopy (XAS) indicated that some Cr(III) was associated with mixed valence Fe oxides like magnetite and Fe-Mn oxides like jacobsite. Additionally, Cr(III) was observed within several μm of Fe and Mn embedded in clays and in mineral coatings. To evaluate the potential for reoxidation of Cr(III) to Cr(VI), additional batch microcosms of aquifer materials and mixtures of Fe- and Mn-coated sand were first reduced for more than 1 year and subsequently oxidized for almost 2 years. Hexavalent chromium was formed and was available for release to the aqueous phase during oxidation of all materials; however, the timing and amount of Cr(VI) formed and released varied among substrates. Artificial substrates containing more Mn produced more Cr(VI). Site material characteristic of recent Mojave River deposits contained within the IRZ produced the least Cr(VI) during oxidation, while site materials composed of older Mojave River aquifer material (containing more Mn) produced more Cr(VI). Site material collected from within the IRZ contained more Cr but produced an intermediate amount of Cr(VI) following oxidation. The combined results of microcosm chemistry and solid-phase analyses showed that the nature and locus of Cr(III) sequestration influenced its vulnerability to reoxidation to Cr(VI). It was concluded that co-location of Cr with Mn at later stages of reduction influenced the susceptibility of Cr(III) to reoxidation in microcosms. Reoxidation of Cr(III) to Cr(VI) was observed in experiments with previously reduced material after just 14 days exposure to oxygen. As much as 10 percent of added Cr was oxidized to Cr(VI) in microcosms prepared using recent Mojave River aquifer material, and as much as 20 percent of added Cr was oxidized to Cr(VI) in microcosms prepared using older Mojave River aquifer material. Less Cr(VI) (less than 3 percent of Cr added before reduction) was released to the aqueous phase, and this release occurred following longer oxygen exposure. Site managers may need to plan for long-term monitoring and the possibility of active maintenance of anoxic conditions within the IRZ to ensure permanent sequestration of Cr after bioremediation with ethanol ceases.

California↗

USGS2002

Bioavailability and toxicity of dietborne copper and zinc to fish

To date, most researchers have used dietborne metal concentrations rather than daily doses to define metal exposure and this has resulted in contradictory data within and between fish species. It has also resulted in the impression that high concentrations of dietborne Cu and Zn (e.g.>900 mg kg −1 dry diet) are relatively non-toxic to fish. We re-analyzed existing data using rations and dietborne metal concentrations and used daily dose, species and life stage to define the toxicity of dietborne Cu and Zn to fish. Partly because of insufficient information we were unable to find consistent relationships between metal toxicity in laboratory-prepared diets and any other factor including, supplemented metal compound (e.g. CuSO 4 or CuCl 2 ), duration of metal exposure, diet type (i.e. practical, purified or live diets), or water quality (flow rates, temperature, hardness, pH, alkalinity). For laboratory-prepared diets, dietborne Cu toxicity occurred at daily doses of >1 mg kg −1 body weight d −1 for channel catfish ( Ictalurus punctatus ), 1–15 mg kg −1 body weight d −1 (depending on life stage) for Atlantic salmon ( Salmo salar ) and 35–45 mg kg −1 body weight d −1 for rainbow trout ( Oncorhynchus mykiss ). We found that dietborne Zn toxicity has not yet been demonstrated in rainbow trout or turbot ( Scophthalmus maximus ) probably because these species have been exposed to relatively low doses of metal (<90 mg kg −1 body weight d −1 ) and effects on growth and reproduction have not been analyzed. However, daily doses of 9–12 mg Zn kg −1 body weight d −1 in laboratory-prepared diets were toxic to three other species, carp Cyprinus carpio , Nile tilapia Oreochromis niloticus , and guppy Poecilia reticulata . Limited research indicates that biological incorporation of Cu or Zn into a natural diet can either increase or decrease metal bioavailability, and the relationship between bioavailability and toxicity remains unclear. We have resolved the contradictory data surrounding the effect of organic chelation on metal bioavailability. Increased bioavailability of dietborne Cu and Zn is detectable when the metal is both organically chelated and provided in very low daily doses. We have summarized the information available on the effect of phosphates, phytate and calcium on dietborne Zn bioavailability. We also explored a rationale to understand the relative importance of exposure to waterborne or dietborne Cu and Zn with a view to finding an approach useful to regulatory agencies. Contrary to popular belief, the relative efficiency of Cu uptake from water and diet is very similar when daily doses are compared rather than Cu concentrations in each media. The ratio of dietborne dose:waterborne dose is a good discriminator of the relative importance of exposure to dietborne or waterborne Zn. We discuss gaps in existing data, suggest improvements for experimental design, and indicate directions for future research.

Comparative Biochemistry and Physiology, Part C: T↗

USGS2025

The Grouse & Grazing Project: Effects of cattle grazing on demographic traits of greater sage-grouse

Greater sage-grouse (Centrocercus urophasianus) were once widespread within sagebrush -grassland ecosystems of western North America, but populations have declined since the mid-1960s. Though sage-grouse were not listed as threatened or endangered under the Endangered Species Act (ESA), when examined in 2015, they remain a species of interest and concern. Roughly half of the sage-grouse’s remaining habitat is on federal land, most of it managed by the Bureau of Land Management (BLM) and the U.S. Forest Service (USFS). Livestock grazing is the most extensive land use within sage-grouse habitat and the effects of livestock grazing on sage-grouse are often debated. The extensive decade-long research project summarized in this report was initiated to provide rigorous experimental research to inform the debate regarding the relationship between livestock grazing and sage-grouse. In 2012, the Idaho Grouse & Grazing Project was started with several partners including the University of Idaho, BLM, Idaho Department of Fish and Game (IDFG), and other partners to evaluate the effects of cattle grazing on sage-grouse vital rates. Many additional supporters have provided resources to this research effort including the Public Lands Council, Idaho Cattle Association, Idaho Governor’s Office of Species Conservation, Western Association of Fish & Wildlife Agencies, U.S. Fish and Wildlife Service, USFS, and numerous grazing associations and ranchers in Idaho. This 10-year research project was a scientifically rigorous and replicated experiment, occurring across five study sites in Idaho. This document is intended to provide a summary of the findings of this unprecedented study. Annual reports are available on the project’s website: https://idahogrousegrazing.org and scientific papers are being prepared and submitted to journals. The project focused on the influence of spring cattle grazing on sage-grouse vital rates across five study sites in Idaho including 21 BLM grazing pastures. From 2014-2023, we captured 1,343 grouse, documented the fate of 1,285 nests, and tracked 399 broods. Vegetation was characterized at 4,777 plots and grazing utilization levels were recorded at >30,000 locations. Because insects are an important food source for sage-grouse hens and their chicks, insect biomass and diversity were also examined in this study. We collected arthropods in 12,151 pitfall samples and 6,217 sweep-net samples across 786 plots within our five study sites. At each study site, three or four grazing treatments were implemented after two years of pre-treatment field investigations. These controlled cattle grazing treatments included spring-grazing in even years, spring-grazing in odd years, spring-and-fall grazing in alternating years, and a no grazing (or rested) control. Once grazing treatments were implemented at a study site, we measured sage-grouse demographic traits for 4-8 years post-treatment. Stocking rate (grazing intensity) was assessed across pastures each year and was influenced by vegetation communities, topography, and water sources. Grazed pastures exhibited lower grass cover and height compared to the no grazing pastures, and the extent of this difference varied based on annual precipitation levels. Rested pastures maintained higher grass cover and grass height, but the differences in habitat structure did not consistently translate to differences in sage-grouse demographic traits. Apparent nesting success varied annually and by site, ranging from 24% to 44% over the study period. Like some other studies, results from this research show that successful (i.e., hatched) sage-grouse nests have taller grass heights than failed nests. The average grass height surrounding successful nests in grazed pastures was shorter than that surrounding successful nests in non-grazed (i.e., rested) pastures. It is well documented that grazing reduces grass height, and these observations have led to widely held assumptions that livestock grazing reduces grass height which negatively affects sage-grouse nesting habitat. At the pasture scale, this study has found that sage-grouse nesting success is no greater in pastures that were rested for 4-8 years than those currently or recently grazed. This study gives no indication that removing cattle from pastures affected nesting success. We found some evidence that nest density varied among the grazing treatments, but we did not see compelling evidence of increases in density of nesting hens following cessation of grazing in the no grazing treatments. Brood survival varied by site and year but showed no strong effect of grazing treatment. Climatic conditions, particularly drought in 2021, had a greater effect on brood survival than grazing metrics. We also found no differences in hen survival among the grazing treatments. Results of this study suggest that hens nesting in spring and fall grazed pastures had similar or even slightly higher brood survival than hens in the rested pastures or the spring grazed pastures. Arthropod biomass and species diversity varied among our study sites and the differences between grazed and rested pastures also varied among study sites. Average biomass and diversity of arthropods was higher in the spring grazed pastures on two of three sites examined but higher in the rested pastures on the other site examined. Some taxa of arthropods were more abundant in grazed pastures while other taxa were more abundant in rested pastures. For example, Carabidae (Ground Beetles) and Formicidae (Ants) had higher biomass in grazed pastures, while Tenebrionidae (Darkling Beetles) and Acrididae (Grasshoppers) had higher biomass in non-grazed pastures. Results indicate that grazing effects on arthropod biomass and arthropod diversity are study site-dependent, suggesting a need to better quantify the most important prey taxa for sage-grouse chicks and to better control for other factors that influence arthropod abundance. Based on results of this research, livestock grazing, when properly managed, does not appear to negatively impact sage-grouse nest survival or brood success. This study provides critical insights for land managers balancing livestock production with sage-grouse conservation, supporting adaptive grazing strategies that maintain both economic and ecological objectives.

Idaho↗

USGS2019

Evaluation of maternal penning to improve calf survival in the Chisana Caribou Herd

Predation is a major limiting factor for most small sedentary caribou ( Rangifer tarandus ) populations, particularly those that are threatened or endangered across the southern extent of the species’ range. Thus, reducing predation impacts is often a management goal for improving the status of small caribou populations, and lethal predator removal is the primary approach that has been applied. Given that predator control programs are often contentious, other management options that can garner broader public acceptance need to be considered. Substantial calf losses to predation in the few weeks following birth are common for these small caribou populations. Therefore, we employed a novel experimental approach of maternal penning with the goal of reducing early calf mortality in the Chisana Caribou Herd, a declining population in southwest Yukon and adjacent Alaska thought to number around 300 individuals. Maternal penning entailed temporarily holding pregnant females on their native range in a large pen secure from predators from late March through the initial weeks of calf rearing to mid‐June. During 2003–2006, we conducted 4 annual penning trials with 17–50 pregnant females each year ( n = 146 total), assessed survival of calves born in the pens, and evaluated survival and nutritional effects of penning for females that were held. We also investigated the herd's population dynamics during 2003–2008 to determine effects of maternal penning on calf recruitment and population growth. In addition to information gained during maternal penning, we determined natality and survival patterns via radiotelemetry, conducted autumn age‐sex composition surveys each year, and censused the population in mid‐October 2003, 2005, and 2007. Based on our penning trials and demographic investigations, we used simulation models to evaluate the effects of maternal penning relative to a population's inherent growth rate (finite rate of increase [λ] without maternal penning) and penning effort (proportion of calves born in penning) to provide perspective on utility of this approach for improving the status of small imperiled caribou populations. Pregnant females held in maternal penning tolerated captivity well in that they exhibited positive nutritional responses to ad libitum feed we provided and higher survival than free‐ranging females (0.993 and 0.951 for penned and free‐ranging females, respectively). Survival of pen calves from birth to mid‐June was substantially higher than that of free‐ranging calves ( = 0.950 and 0.376, respectively). This initial period accounted for 76% of the annual calf mortality in the free‐ranging population. Pen‐born calves maintained their survival advantage over wild‐born calves to the end of their first year ( = 0.575 and 0.192, respectively) during years penning occurred. Females in the Chisana Herd were highly productive with 57% producing their first offspring at 2 years of age, and annual natality rates averaging 0.842 calves/female ≥2 years old. Age‐specific natality rates exceeded 0.900 for 4–9‐year‐olds, then exhibited senescent decline to 0.467 by 19 years old. Annual survival of free‐ranging adult females and calves averaged 0.892 and 0.184, respectively, over all study years; both were reduced during 2004 because of poor winter survival. We noted reduced nutritional condition of caribou late that winter in that females we captured were lighter than in other years and produced lighter calves. We suspect that the reduced survival during winter 2004 and the observed nutritional characteristics resulted from adverse snow conditions in combination with effects of the extreme drought experienced the previous summer. Age‐specific survival of adult females was ≥0.900 through 10 years of age, then declined with age. The Chisana Herd numbered 720 caribou in mid‐October 2003, or more than twice that estimated prior to initiating maternal penning, and increased to 766 caribou by mid‐October 2007. We calculated that penning added 54.2 yearling recruits, or 40% of calves released from penning. Based on the maternal penning results and the population's vital rates, we determined that the herd would have been stable during 2003–2007 at about 713 caribou without maternal penning; thus, the increase in herd size we observed resulted from maternal penning and was equivalent to the estimate of additional yearling recruits. The improvement in the population trend invoked by maternal penning was limited by the larger than expected population size and resulting low penning effort ( = 11% of calves born in pen). Our simulations corroborated that maternal penning increased population size by the number of additional recruits provided, even at low penning effort, for inherently stable populations. As the inherent rate of increase dropped below λ = 1.000, more of the additional recruits from penning were needed to offset the downward population inertia, thus requiring increased penning effort to reach stability. For populations declining at λ < 0.890, stability could not be achieved with 100% penning effort given the vital rates in our models. Maternal penning in its limited application to date has proven to be broadly popular as a nonlethal management action aimed at reducing initial calf mortality from predation in small caribou populations. However, based on the Chisana program and 3 subsequent efforts elsewhere, improvement in population trends have been modest at best and come at a high financial cost. Given the necessity of maximizing penning effort, maternal penning may have a role in addressing conservation challenges for some small caribou populations that are stable or slowly declining, but its application should be primarily driven by objective assessment of the likelihood of improving population trends rather than popularity relative to other management options.

Wrangell‐St. Elias National Park and Preserve, Klu↗

USGS2012

Archive of post-Hurricane Charley coastal oblique aerial photographs collected during U.S. Geological Survey field activity 04CCH01 from Marco Island to Fort DeSoto, Florida, August 15, 2004

On August 15, 2004, the U.S. Geological Survey (USGS) conducted an oblique aerial photographic survey off the southwest coast of Florida, from Marco Island to Fort DeSoto, aboard a Navajo Chieftain airplane, tail number N2KK, at an altitude of 500 ft and approximately 1000 ft offshore. These photographs were used to document coastal changes such as beach erosion and overwash caused by Hurricane Charley. They will also be used as baseline data for future coastal change. The oblique photography also served as qualitative ground truthing for the Experimental Advanced Airborne Research Lidar (EAARL) coastal topography and bathymetry data collected on August 16, 2004 (Bonisteel and others, 2009). This report serves as an archive of photographs collected during the August 15, 2004, post-Hurricane Charley coastal oblique aerial survey along with associated flight path maps, KML files, navigation files, digital Field Activity Collection System (FACS) logs, and Federal Geographic Data Committee (FGDC) metadata. Refer to the Acronyms page for expansions of all acronyms and abbreviations used in this report. The USGS St. Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 04CCH01 tells us the data were collected in 2004 for the Coastal Change Hazards (CCH) study and the data were collected during the first field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the ID number. Two separate records of flight navigation were collected during the survey. The first was a continuous ASCII text file from the PLGR that recorded only latitudes, longitudes, and altitudes every 30 sec for the entire flight. No time values were recorded by the PLGR. The second navigation record was recorded by a Trimble Centurion GPS and converted to subtitles on the video, using a Compix Titler unit. The video was shot continuously during the survey. The video subtitles recorded day, month, year, latitude, longitude, and time in hours, minutes, and seconds. In order to produce a digital record of the navigation values that included latitude, longitude, and time, each was manually extracted from the video every 5 min, and these values were matched to the latitude and longitude in the PLGR file. Next, the time was interpolated between these 5-min fixes using Excel to produce time values for each navigation fix recorded in the PLGR file. The location of each photograph taken was determined in the following manner. A Nikon MF-14 data back marks the time each photograph was acquired on the lower right corner of the image in day, hour, and minute format (in UTC). These values were entered from the photographs into an Excel spreadsheet. It is assumed for the purposes of locating the images that the photographs were taken at a constant rate during any given minute of flight. To assign the time value in seconds to each photograph, the number of photographs taken during each minute was evenly distributed across that minute. For example, if 15 photographs were taken during minute 19:00:00, we assume that a picture was taken every 4 sec. The photographs were assigned the time values 19:00:00, 19:00:04, 19:00:08, and so on. The video time navigation file was then merged with the new interpolated photograph file based on time to produce the point of which each photograph was collected. As a result, the positions assigned to each photograph are an estimate of the aircraft position, not the location of the landmark photographed. The photographs provided here are JPEG scanned images of the analog slides. The metadata values for photo creation time, GPS latitude, GPS longitude, GPS position, keywords, credit, artist, caption, copyright, and contact were added to each photograph's EXIF header using EXIFtools (see the Software page). Photographs can be opened directly with any JPEG-compatible image viewer by clicking on a thumbnail on the contact sheet, or, when viewing the Google Earth KML file, by clicking on the marker and then clicking on either the thumbnail or the link below the thumbnail. The KML files were created using the photographic navigation files and the CreateKML JavaScript (see the Software page). To view the survey maps and navigation files, and for more information about these items, see the Navigation page. Figure 1 displays the acquisition geometry. The tables provide detailed information about the assigned location, name, data, and time the photograph was taken along with links to the photo and corresponding 5-min contact sheet. Refer to table 1 and table 2 for details of the northern and southern county photographs, respectively.

Florida↗

USGS2006

High efficiency of meiotic gynogenesis in sea lamprey Petromyzon marinus

Induction of androgenesis and gynogenesis by applying a pressure (PS) or heat shock (HS) to double the haploid chromosomal set results in progenies possessing only chromosomes from a single parent. This has never been accomplished in representatives of Agnatha. The objective of this study was to induce gynogenesis and androgenesis in sea lamprey Petromyzon marinus. For gynogenesis experiments, ultraviolet (UV)-irradiated sperm was used to activate sea lamprey eggs and HS or PS were applied to inhibit the second meiotic division and consequently induce diploidy in the embryos. The UV irradiation of immobilized sperm was performed for 1 min at 1,719 J m-2. HS of 35 ?? 1??C for 2 min and PS of 9,000 psi for 4 min were applied at different times after egg activation (8, 12, 20, and 24 min or 8, 16, and 24 min for HS or PS, respectively). Regardless of the induction time of the HS, survivals at pre-hatching stage were similar. In contrast, PS applied 8 min after activation appears to increase survival rate of pre-hatched embryos in comparison to 16 and 24 min after activation. In control groups, without shock treatment (no diploidization), there were no survivors. All deformed, gynogenetic embryos were confirmed to be haploids and died prior to burying themselves in the sand. We confirmed by flow cytometry that progenies produced using both shock methods surviving to the next stage, burying in the substrate, were diploid gynogenetic. For the androgenesis experiments, UV-irradiated eggs (1,719 J m-2 for 1 min) were fertilized with non-treated sperm and HS was applied to restore diploidy of the eggs. Several attempts have been made to optimize the parameters used. HS of 35 ?? 1??C was applied 110, 140, 170, 200, and 230 min after activation for 2 min. Low yields of androgens were obtained and all animals died within a week after hatching. These techniques will allow to establish meiotic gynogenetic lines of sea lamprey for determining sex differentiation in this species and to analyze its hormonal and environmental regulation. ?? 2006 Wiley-Liss, Inc.

Journal of Experimental Zoology Part B: Molecular ↗

USGS2018

Brown trout in the Lees Ferry reach of the Colorado River—Evaluation of causal hypotheses and potential interventions

Over the period 2014–2016, the number of nonnative brown trout (Salmo trutta) captured during routine monitoring in the Lees Ferry reach of the Colorado River, downstream of Glen Canyon Dam, began increasing. Management agencies and stakeholders have questioned whether the increase in brown trout in the Lees Ferry reach represents a threat to the endangered humpback chub (Gila cypha), to the rainbow trout (Oncorhynchus mykiss) sport fishery, or to other resources of concern. In this report, we evaluate the evidence for the expansion of brown trout in the Lees Ferry reach, consider a range of causal hypotheses for this expansion, examine the likely efficacy of several potential management interventions to reduce brown trout, and analyze the effects of those interventions on other resources of concern. The brown trout population at Lees Ferry historically consisted of a small number of large fish supported by low levels of immigration from downstream reaches. This population is now showing signs of sustained successful reproduction and is on the cusp of recruiting locally hatched fish into the spawning class, based on analysis with a new integrated population model. The proximate causes of this change in status are a large pulse of immigration in the fall of 2014 and higher reproductive rates in 2015–2017. The ultimate causes of this change are not clear. The pulse of immigrants from downstream reaches in fall 2014 may have been induced by three sequential high-flow releases from the dam in November of 2012–2014, but may also have been the result of a unique set of circumstances unrelated to dam operations. The increase in reproduction may have been the result of any number of changes, including an Allee effect, warmer water temperatures, a decrease in competition from rainbow trout, or fall high-flow releases. Correlations over space and time among predictor variables do not allow us to make a clear inference about the cause of the changes. Under a null causal model, and without any changes to management, we predict there is a 36-percent chance the brown trout population at Lees Ferry will not show sustained growth, and will remain around a mean size of 5,800 adults, near its current size; in contrast, we predict there is a 64-percent chance that the population has a positive intrinsic growth rate and will increase 3–10 fold over the next 20 years. A humpback chub population model linked to the brown trout model suggests an increase of brown trout of this magnitude could lead to declines in the minimum adult humpback chub population over the same time period. Forecasts of rainbow trout abundance, however, suggest that increased abundance of brown trout in the Lees Ferry reach does not pose a threat to the rainbow trout fishery there. There are interventions that may be effective in moderating the growth of the brown trout population in the Lees Ferry reach of the Colorado River. Across causal hypotheses, we predict that removal strategies (for example, a concerted electrofishing effort or an incentivized take program targeted at large brown trout) could reduce brown trout abundance by approximately 50 percent relative to status quo management. Reductions in the frequency or a change in the seasonal timing of high-flow releases from Glen Canyon Dam could be even more effective, but only under the causal hypotheses that involve effects of such releases on immigration or reproduction. Brown trout management flows— dam releases designed to strand young fish at a vulnerable stage—may be able to reduce brown trout abundance to some degree, but are not forecast to be the most effective strategy under any causal hypothesis. We predict that the alternative management interventions would have effects on other resource goals as well, and the pattern of these effects differs across causal hypotheses. The removal strategies would incur direct costs (on the order of $7 million over 20 years) and the mechanical removal strategy is unethical from the perspective of several tribes. The strategies that involve reducing the frequency of high-flow releases from Glen Canyon Dam would decrease the ability to transport and store sediment in the ecosystem, potentially undermining goals associated with sandbar building, recreation, and riparian vegetation, but would increase hydropower revenue. Trout management flows would reduce hydropower revenue. From the standpoint of humpback chub, the alternative strategies largely follow the effect on brown trout; when brown trout abundance is reduced, predation pressure decreases, and humpback chub viability is predicted to increase, but the variation in predicted chub viability is not large across strategies or causal hypotheses. To design a response to brown trout, management agencies will need to navigate both the tradeoffs among resources goals and the uncertainty in the causes of the brown trout expansion. Continued monitoring, possibly coupled with new research or experimental management actions that better inform demographic and ecological dynamics, can help to reduce the causal uncertainty.

Arizona↗

USGS2006

Costimulatory receptors in a teleost fish: Typical CD28, elusive CTLA4

T cell activation requires both specific recognition of the peptide-MHC complex by the TCR and additional signals delivered by costimulatory receptors. We have identified rainbow trout sequences similar to CD28 (rbtCD28) and CTLA4 (rbtCTLA4). rbtCD28 and rbtCTLA4 are composed of an extracellular Ig-superfamily V domain, a transmembrane region, and a cytoplasmic tail. The presence of a conserved ligand binding site within the V domain of both molecules suggests that these receptors likely recognize the fish homologues of the B7 family. The mRNA expression pattern of rbtCD28 and rbtCTLA4 in naive trout is reminiscent to that reported in humans and mice, because rbtCTLA4 expression within trout leukocytes was quickly up-regulated following PHA stimulation and virus infection. The cytoplasmic tail of rbtCD28 possesses a typical motif that is conserved in mammalian costimulatory receptors for signaling purposes. A chimeric receptor made of the extracellular domain of human CD28 fused to the cytoplasmic tail of rbtCD28 promoted TCR-induced IL-2 production in a human T cell line, indicating that rbtCD28 is indeed a positive costimulator. The cytoplasmic tail of rbtCTLA4 lacked obvious signaling motifs and accordingly failed to signal when fused to the huCD28 extracellular domain. Interestingly, rbtCTLA4 and rbtCD28 are not positioned on the same chromosome and thus do not belong to a unique costimulatory cluster as in mammals. Finally, our results raise questions about the origin and evolution of positive and negative costimulation in vertebrate immune systems. T cell activation is initiated through complex cell-to-cell interactions. TCRs expressed on the surface of T cells first recognize antigenic peptides presented by MHC molecules on the surface of APCs. TCRs and other surface receptors and ligands stabilize the contact between T cells and APCs, which triggers signal transduction pathways resulting in T cell activation. According to the two-signal model ( 1 , 2 ), T cell activation by Ag requires both specific recognition of the peptide by the TCR (signal 1) and additional signals delivered by other costimulatory receptors (signal 2). Among the known costimulatory receptors, CD28 and CTLA4 (also known as CD152), which are expressed on T cells and bind their corresponding ligands B7-1/B7-2 (CD80/CD86) on APCs, represent a well-studied system in mammals ( 3 ). CD28 is a glycosylated homodimeric protein expressed on the surface of double-positive thymocytes, mature CD4 + T cells, CD11b − CD8 + T cells, and γδ CD3 + T cells ( 4 , 5 ). CD28 is expressed at higher levels on activated T cells than on resting cells ( 6 ). In mammals, CD28 binds to B7-1 and B7-2, which are expressed on the surface of APCs, and delivers a critical costimulatory signal to T lymphocytes. In the absence of CD28 ligation, TCR binding either induces apoptosis or anergy in T cells ( 5 ). Engagement of CD28 alone cannot activate T cells, even if synergetic effects are provided via stimulation by T cell mitogens or anti-CD3 treatment ( 7 ). A tyrosine-based motif in cytoplasmic tail of CD28 functions as a binding site for the p85 PI3K subunit when it is phosphorylated ( 8 , 9 ). Other CD28 intracytoplasmic motifs, which associates with IL-2-inducible tyrosine kinase, lymphocyte-specific tyrosine kinase, and the adaptor growth-factor receptor bound protein-2 are responsible for signal transduction ( 10 , 11 , 12 ). The binding of growth-factor receptor bound protein-2 to CD28 also activates the GTPase RAS ( 13 ). CD28 signaling is also thought to contribute to the mobilization of lipid rafts to the immunological synapse ( 14 ), the region of contact between T cell and APC, which lowers the overall threshold of TCR engagement required for effective cytokine production and proliferation ( 15 ). In contrast, CTLA4 is a powerful negative regulator of T cell activation and was first cloned via differential screening of a cytotoxic T cell cDNA library ( 16 ). CD28 and CTLA4 belong to the same family and share high sequence similarity to each other ( 16 , 17 ). Both receptors interact with B7-1 and/or B7-2 but induce different signals: CD28 amplifies signaling triggered by the TCR-CD3 complex, whereas CTLA4 generates negative signals that inhibit T cell activation ( 18 ). CTLA4 has higher affinity for B7-1 and B7-2 compared with CD28, and its expression is also induced by TCR engagement ( 19 ). The mechanisms of CTLA4-mediated suppression likely involve both competition with CD28 for B7-1/B7-2 binding and potent inhibitory signals delivered by CTLA4 ( 20 ). The inhibitory signaling mechanisms triggered by CTLA4 are not clear. The CTLA4 cytoplasmic tail lacks typical ITIM motifs and shares with CD28 a p85 binding site ( 21 ). Thus, the extent of an immune response is likely controlled through the finely tuned expression of costimulatory receptors from the CD28/CTLA4 family on the surface of activated T cells ( 22 , 23 ). Very little is known about T cell responses and activation in bony fish. TCR-αβ cDNAs ( 24 , 25 , 26 , 27 ) and polymorphic class IA and class IIA/B MHC molecules ( 28 , 29 , 30 ) have been reported in several species, suggesting that the fish TCR recognizes antigenic peptides presented by MHC molecules similar to that of mammals. T cell-mediated responses in fish are supported by several lines of evidence. Allograft rejection provided the first experimental indications suggesting that bony fish possess a functional T cell-mediated immune response ( 31 , 32 ). In vitro assays for allospecific cytotoxicity have also been established using clonal and nonclonal catfish cell lines ( 33 , 34 ) or clonal rainbow trout ( 35 ). Autologous cell-mediated specific lysis of virus-infected syngenic target cells has also been reported in cloned goldfish ( 36 , 37 ). Finally, both public and private T cell-specific expansions have been observed in rainbow trout during secondary immune responses to viral hemorrhagic septicemia virus (VHSV), 3 a fish rhabdovirus, using TCR-β CDR3-length spectratyping ( 38 ). TCR-MHC-peptide interactions induce signaling events through CD3 in mammals and most likely in lower vertebrates because a complete set of CD3 genes, including TCR ζ, CD3 ε, and CD3 γδ, has been found in Pufferfish and Xenopus ( 39 , 40 ). CD8α has been identified in rainbow trout ( 41 ); however, the cytoplasmic tail lacks the consensus p56 lck motif, suggesting that TCR/CD3/CD8-mediated signaling events may be different in teleosts. In this study, we have identified and initially characterized two members of the CD28 family in rainbow trout, rbtCD28 and rbtCTLA4. Their sequence features and expression patterns suggest that they are the likely homologues of mammalian CD28 and CTLA4. The potential costimulatory capacities of these fish receptors were investigated using a human T cell line expressing chimeric receptors composed of the extracellular domain of human CD28 (hCD28) fused to the cytoplasmic tail of rbtCD28 or rbtCTLA4. The chimeric hCD28-rbtCD28 receptor mediated enhanced TCR-induced IL-2 production, suggesting a costimulatory function for rbtCD28. In contrast, the divergent cytoplasmic tail from rbtCTLA4 did not mediate similar signaling activities. This study therefore provides the first characterization of costimulatory receptors in lower vertebrates.

Journal of Immunology↗

USGS2000

Design of a shallow ground-water network to monitor agricultural chemicals, Lake Wales Ridge, central Florida

Extensive agricultural land use and dynamic hydraulic connections between the land surface and ground-water resources render many of Florida's aquifers vulnerable to chemical contamination. In these areas, there is a need to monitor shallow ground water for agricultural chemicals to evaluate potential migration of the chemicals to the subsurface and to deeper aquifers, and to assess the effects of agricultural practices on ground-water quality. Historically, efforts to monitor water-table aquifers have been minimal compared with monitoring deeper aquifers used for municipal drinking-water supply. The Florida Department of Agriculture and Consumer Services has proposed the establishment of long-term, water-quality networks to monitor shallow ground water in agricultural areas of Florida. These networks will bridge the current information gap between local-scale short-duration field studies, which are required for pesticide licensing, and statewide monitoring of deeper ground-water resources. Laboratory (experimental) and short-term field evaluations of the transport of agricultural chemicals to the subsurface contain some degree of uncertainty due to widespread variations in environmental conditions. The proposed regional-scale shallow ground-water networks will serve as "early warning" networks to avoid contamination of ground-water resources. The objectives of these shallow ground-water networks are to provide information for early detection of pesticides and nitrate in the subsurface, and for evaluating temporal trends in concentrations in relation to changes in land use and agricultural practices. Information on trends is important to the U.S. Environmental Protection Agency, State agencies, and agricultural managers, and is an integral part of Florida's Pesticide Management Plan, which evaluates the effectiveness of implementing "best management practices" to minimize environmental impacts. Lake Wales Ridge in Polk and Highlands Counties has been identified by the Florida Department of Agriculture and Consumer Services as a pilot study area for implementing a regional shallow ground-water network. Information gained from designing the Lake Wales Ridge Network will be used to develop plans as similar networks are considered for other areas of Florida. Lake Wales Ridge is heavily utilized for citrus production, but the well-drained, clean sands underlying the region, coupled with a hydraulic connection with deeper karst formations, render the area extremely vulnerable to the transport and migration of agricultural chemicals within the subsurface. The network design for Lake Wales Ridge was developed on the basis of the objectives of monitoring, factors affecting aquifer vulnerability, probability (statistical) sampling theory, and specifications regarding well construction, sampling, and laboratory analysis. The network will provide estimates of regional pesticide and nitrate concentrations in targeted ground water, monitor for trends over time, and will provide baseline, regional-scale information. The areas targeted for sampling were citrus groves located on soils classified as vulnerable to leaching of agricultural chemicals, and ground water in close proximity to the water table. The duration of monitoring is planned to be long term. Chemicals targeted for monitoring include selected nutrients, trace elements, and pesticides used for citrus management. Standardization of field sampling and laboratory methods, and construction of a computerized data-base repository will be important for long-term utility of the data. The proposed network design consists of existing and newly drilled wells. Existing wells were evaluated as candidates for the network based on location and well-construction specifications for water-quality monitoring. Using probability selection techniques, new well locations were selected in areas that lacked adequate existing wells. Implementation of the network will occur in phases. Quarterly sampling of 13 Phase I wells commenced in April 1999. An additional 11 Phase II wells were added to the network in April 2000. Proposed locations have been identified for 8 Phase III wells. Future topics for study include a regional water-quality analysis, a network design evaluation, and consideration of local-scale studies needed to support regional monitoring efforts. An analysis of historical water-quality data for Lake Wales Ridge, including Phase I wells, is needed for the purpose of examining trends, providing a preliminary description of spatial and short-term variability in water quality, and evaluating the proposed network design for cost effectively meeting program objectives. Local-scale, process-oriented studies are needed to provide important information for evaluating regional water-quality data. Coordination between individuals conducting such local-scale studies and those interpreting regional sampling results will be considered as a component of the network design, and will require coordination between multiple agencies.

Florida↗

USGS2023

Selenium hazards in the Salton Sea environment—Summary of current knowledge to inform future wetland management

Quaternary marine and continental shales in the western United States are sources of selenium that can be loaded into the aquatic environment through mining, agricultural, and energy production processes. The mobilization of selenium from shales through agricultural irrigation has been recognized since the 1930s; however, discovery of deformities in birds and other wildlife using agricultural habitats during the 1980s spurred studies to determine the extent and effects of the contamination. Through these early studies, researchers determined that biota in the Salton Sea drainage basin was at risk from legacy selenium contamination in the Colorado River watershed. The Salton Sea and its surrounding managed and unmanaged wetlands provide vital inland habitat and trophic support for diverse assemblages of resident and migratory wildlife, and understanding regional selenium hazards for these trust species is a priority for many Federal and State agencies. The modern Salton Sea is a shallow, landlocked saline lake in Riverside and Imperial Counties (not shown) of California that is sustained by irrigation return and perennial river inflow. Changes in water transfer agreements under the 2003 Quantification Settlement Agreement (QSA) have resulted in reduced irrigation flow, declining lake levels, and the evolution of unmanaged wetlands in areas where drains and rivers no longer reach the Salton Sea. These wetlands provide additional habitat for some species of concern, but their potential to increase selenium hazards for trust species is largely unknown. From the 1980s to 2020, efforts to document selenium contamination and effects throughout the region have resulted in a considerable amount of selenium data from the Salton Sea and its surrounding drainage basin; however, no long-term (greater than 20 years), consistent sampling program has been established, and all data have been collected by different entities using a variety of protocols and analytical techniques. This lack of coordination has been previously documented in regional management plans and has led to difficulty in reliably assessing selenium hazards in the Salton Sea environment. This report provides a summary of the available disparate selenium information collected from water, sediment, and biota in the Salton Sea region since the 1980s and to identify data gaps that need to be filled to understand the potential effects of selenium on species of concern, including federally endangered desert pupfish ( Cyprinodon macularius ) and Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis; formerly Yuma Clapper Rail, Rallus longirostris yumanensis ). Available data from the Salton Sea drainage basin show that water from the Colorado River has the lowest selenium concentration of all surface water sources. All other surface water flowing into the Salton Sea has elevated selenium concentrations due to evaporation and evapotranspiration that occurs in agricultural fields and associated water delivery infrastructure or leaching of selenium from irrigated farmland soils. The Salton Sea has lower selenium concentrations because of various biogeochemical processes that recycle selenium into the sediment or volatilize it to the atmosphere; however, these mechanisms are not well defined, and it is not clear if selenium cycling will change in response to possible changes in the oxidation state of the Salton Sea bottom waters as water levels decline. Agricultural drains have the highest average selenium concentrations, but few drains have been sampled since changes in irrigation practices have occurred (due to the 2003 QSA). Groundwater selenium concentrations are variable; some wells south of the Salton Sea have selenium concentrations as high as 300 micrograms per liter (µg/L), whereas selenium concentrations are below detection in other wells. Groundwater and surface-water geothermal discharge zones around the margins of the Salton Sea and in unmanaged wetlands have not been studied in detail, and published selenium measurements are not available for these surface features. Selenium concentrations in the sediment of the Salton Sea drainage basin are highest in wetland particulate organic matter and the Salton Sea lakebed, indicating that removal of selenium from the water to the sediment has been a primary mechanism for keeping selenium concentrations low in the water column. Sediment selenium concentrations in wetlands are lower than in the Salton Sea but higher than inflowing drains and rivers, indicating the lentic wetland sites also may be important sinks for selenium because of biogeochemical processes. Sediment selenium data have not been collected in agricultural drains since changes in irrigation practices occurred (due to the 2003 QSA), and it is unknown if selenium sequestration from the water column has changed in these systems. We divided biological data into broad taxonomic categories, including primary producers, invertebrates, herpetofauna, mammals, fishes, and birds to facilitate evaluation of selenium concentrations and spatiotemporal trends observed in the Salton Sea. Overall, selenium concentrations were substantially greater in algae samples compared to all vascular plant samples combined. Median selenium concentrations in several invertebrate taxa (Chironomidae, Formicidae, Corixidae, Corbiculidae and Nereididae, and Decapoda) exceeded the maximum suggested dietary threshold of 3.0–4.0 micrograms per gram (µg/g) dry weight (dw) for predators consuming invertebrates in aquatic food webs. The greatest number of samples were collected from fish, and selenium distributions among species and locations showed that the range for most samples was lower than the U.S. Environmental Protection Agency selenium criterion for aquatic life (8.5 µg/g dw whole body, 11.3 µg/g dw fillets). The median selenium concentrations for whole body fish were below the selenium criterion in most locations, except for bairdiella ( Bairdiella icistia ) from the Salton Sea and irrigation drains, a few individual tilapia spp. (family Cichlidae, including genera Tilapia, Oreochromis , and their hybrids) from the river and river outlets, and several western mosquitofish ( Gambusia affinis ) and sailfin molly ( Poecilia latipinna ) from irrigation drain outlets. For avian samples combined among years and locations, median selenium concentrations in livers from all families except waders and Ibis (family Threskiornithidae) were higher than levels expected to cause selenium toxicosis (10–20 µg/g dw), and all median egg concentrations were above or near 6.0 μg/g dw, which is a conservative threshold value for reproductive impairment. Most knowledge gaps we identified for water, sediment, and biota were interrelated, and the use of integrated approaches to address knowledge gaps can provide greater insight into the drivers behind selenium hazards. Integrated water, sediment, and biota studies could help identify cost-effective management solutions that serve multiple purposes. A comprehensive analysis of the hydrology, biogeochemistry, and food-web processes in wetlands and other habitats can inform predictive models to identify drivers of selenium bioavailability, uptake from the environment and subsequent trophic transfer, ultimately forming the basis for experimental habitat management manipulations to minimize selenium hazards to wildlife. Furthermore, a comprehensive, long-term sampling and analytical laboratory plan would enable comparison of data among different entities that are sampling at the Salton Sea. Such efforts are well suited to help fill knowledge gaps that preclude understanding of selenium hazards and future management options for biota using Salton Sea habitats, including newly formed wetlands throughout the region. All data compiled for this report are available in two U.S. Geological Survey data releases: Groover and others (2022) for water and sediment samples and De La Cruz and others (2022) for biological samples. The data releases include all publicly available data for selenium concentrations in water, sediment, and biological samples collected in and around the Salton Sea, including the Coachella and Imperial Valleys. The data releases also include previously unpublished data.

California↗