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USGS2010

Utah Science Activities, Update 2010

The U.S. Geological Survey (USGS), a bureau of the U.S. Department of the Interior, serves the Nation by providing reliable scientific information to describe and understand the Earth; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect our quality of life. The USGS has become a world leader in the natural sciences thanks to our scientific excellence and responsiveness to society's needs. This newsletter describes some of the current and recently completed USGS earth-science activities in Utah. As an unbiased, multi-disciplinary science organization that focuses on biology, geography, geology, and water, we are dedicated to the timely, relevant, and impartial study of the landscape, our natural resources, and the natural hazards that threaten us. Learn more about our goals and priorities for the coming decade in the USGS Science Strategy at http://www.usgs.gov/science_strategy/ .

General Information Product↗

USGS2017

Central Plains Water Science Center bookmark

The U.S. Geological Survey Central Plains Water Science Center, serving the states of Kansas and Nebraska, has collected and interpreted hydrologic information for more than a century. Data collected include streamflow and gage height, reservoir content, water quality and water quantity, suspended sediment, and groundwater levels. Interpretative hydrologic studies are completed on national, regional, statewide, and local levels and cooperatively funded through partnerships with these agencies. The U.S. Geological Survey provides impartial scientific information to describe and understand the health of our ecosystems and environment; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect our quality of life. These collected data are in the National Water Information System (Kansas: https://dashboard.waterdata.usgs.gov/app/nwd/en/ and Nebraska: https://dashboard.waterdata.usgs.gov/app/nwd/en/ ), and all results are documented in reports that also are online (Kansas: https://www.usgs.gov/centers/kswsc and Nebraska: https://www.usgs.gov/centers/nebraska-water-science-center/publications ).

General Information Product↗

USGS2017

Science programs in Kansas

The U.S. Geological Survey (USGS) is a non-regulatory Earth science agency within the Department of the Interior that provides impartial scientific information to describe and understand the health of our ecosystems and environment; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect our quality of life. The USGS cooperates with Federal, State, tribal, and local agencies in Kansas to deliver long-term data in real-time and interpretive reports describing what those data mean to the public and resource management agencies. USGS science programs in Kansas provide real-time groundwater monitoring at more than 19 locations; streamflow monitoring at more than 216 locations; water-quality and trends in the Little Arkansas and Kansas Rivers; inflows and outflows of sediment to/from reservoirs and in streams; harmful algal bloom research in the Kansas River, Milford Lake, and Cheney Reservoir; water-quantity and water-quality effects of artificial groundwater recharge for the Equus Beds Aquifer Storage and Recovery project near Wichita, Kansas; compilation of Kansas municipal and irrigation water-use data statewide; the occurrence, effects, and movement of environmental pesticides, antibiotics, algal toxins, and taste-and-odor compounds; and funding to the Kansas Water Resources Research Institute to further research and education through Kansas universities.

Kansas↗

USGS2000

Trace elements and semi-volatile organic compounds in bed sediments from streams and impoundments at Fort Gordon, Georgia

In May 1998, the U.S. Geological Survey, in cooperation with the Environmental and Natural Resources Management Office of the U.S. Army Signal Center and Fort Gordon, investigated the presence and disbursal of trace elements and semi-volatile organic compounds in bed sediments from selected streams and impoundments at the Fort Gordon military installation near Augusta, Georgia. Concentrations of 18 trace elements and total organic carbon, and 66 semi-volatile compounds were determined from analysis of the fine-grained fraction of bed-sediment samples from 29 surface-water deposition locations. Analysis of the bed-sediment data indicates that commercial and industrial land-use areas generally are associated with the highest concentrations of trace elements and semi-volatile organic compounds, and the greatest occurrence and distribution of trace elements and semi-volatile organic compounds in bed sediments at Fort Gordon. Bed sediment collected at sites having drainage areas less than 1.0 square mile and greater than 45 percent commercial and industrial land uses, have the most occurrences and the highest concentrations of trace elements and semi-volatile organic compounds. Sampling sites having less than 2 percent commercial and industrial land uses had the lowest concentrations, regardless of drainage basin size. Relative rankings and evaluation of individual trace element and semi-volatile organic compound concentration data identified two sites that have substantially higher sediment-quality scores than the other sites. This suggests that these sites have the greatest potential risk for adverse effects on aquatic life. The effects of these elevated trace element and semi-volatile organic compound concentrations on aquatic life in these basins may merit further investigation.

Georgia↗

USGS2003

Cx-02 Program, workshop on modeling complex systems

This publication contains the abstracts and program for the workshop on complex systems that was held on November 19-21, 2002, in Reno, Nevada. Complex systems are ubiquitous within the realm of the earth sciences. Geological systems consist of a multiplicity of linked components with nested feedback loops; the dynamics of these systems are non-linear, iterative, multi-scale, and operate far from equilibrium. That notwithstanding, It appears that, with the exception of papers on seismic studies, geology and geophysics work has been disproportionally underrepresented at regional and national meetings on complex systems relative to papers in the life sciences. This is somewhat puzzling because geologists and geophysicists are, in many ways, preadapted to thinking of complex system mechanisms. Geologists and geophysicists think about processes involving large volumes of rock below the sunlit surface of Earth, the accumulated consequence of processes extending hundreds of millions of years in the past. Not only do geologists think in the abstract by virtue of the vast time spans, most of the evidence is out-of-sight. A primary goal of this workshop is to begin to bridge the gap between the Earth sciences and life sciences through demonstration of the universality of complex systems science, both philosophically and in model structures.

Open-File Report↗

USGS2000

A note on scrap in the 1992 U.S. input-output tables

Introduction A key concern of industrial ecology and life cycle analysis is the disposal and recycling of scrap. One might conclude that the U.S. input-output tables are appropriate tools for analyzing scrap flows. Duchin, for instance, has suggested using input-output analysis for industrial ecology, indicating that input-output economics can trace the stocks and flows of energy and other materials from extraction through production and consumption to recycling or disposal. Lave and others use input-output tables to design life cycle assessment models for studying product design, materials use, and recycling strategies, even with the knowledge that these tables suffer from a lack of comprehensive and detailed data that may never be resolved. Although input-output tables can offer general guidance about the interdependence of economic and environmental processes, data reporting by industry and the economic concepts underlying these tables pose problems for rigorous material flow examinations. This is especially true for analyzing the output of scrap and scrap flows in the United States and estimating the amount of scrap that can be recycled. To show how data reporting has affected the values of scrap in recent input-output tables, this paper focuses on metal scrap generated in manufacturing. The paper also briefly discusses scrap that is not included in the input-output tables and some economic concepts that limit the analysis of scrap flows.

Open-File Report↗

USGS2001

Toward assessing the effects of bank stabilization activities on wildlife communities of the upper Yellowstone River, U.S.A

The upper Yellowstone River has been subject to multiple bank stabilization projects between Gardiner and Springdale, Montana, over the last 20 years. Additional channel modification activities are likely on the Yellowstone, and there is concern over the short- and long-term cumulative effects of channel modification activities on physical processes and dynamics of the river, associated riparian vegetation, and fish and wildlife resources that depend on the river. This document represents a first step toward conservation of the riparian vertebrate community on the upper Yellowstone River, with expected changes due to bank stabilization activities. Conservation strategies should be based on the life histocy attributes of the species of interest and the expected landscape changes for a specific geographic region. In this document, species accounts summarize the distribution, abundance, life histories, and habitat associations of 69 bird species, 4 amphibian species, 5 reptile species, and 9 species of mammals known or assumed to occur in the study area, including 38 species designated as species of interest. A matrix is presented to assist managers in evaluating the degree to which a species may be negatively affected by riverbank stabilization activities. The degree of vulnerability of birds to bank stabilization activities and changes in stream flow is strongly related to the degree to which the species is tied to riparian habitats. Of birds, the 13 species that are riparian obligates are the most vulnerable to bank stabilization activities. Belted Kingfishers would suffer if fish populations decline. Harlequin Ducks, Spotted Sandpipers, and American Dippers would be negatively influenced by changes in stream and bank morphology, especially the loss of shallow water and braided channels. Willow Flycatchers, Redeyed Vireos, Yellow Warblers, American Redstarts, Northern Waterthrushes, Common Yellowthroats, Wilson's Warblers, Song Sparrows, and Lincoln's Sparrows would be negatively affected if stream flow changes resulted in eventual reductions in the extent of shrub understocy. Species that are affected by changes in fish populations and stream morphology would suffer more rapid changes than species affected primarily by changes in riparian vegetation (either understory or trees), which would occur over a much longer period of time. Four amphibian species, three reptile species, and one mammal species are highly vulnerable to bank stabilization activities. Tiger salamanders, boreal toads, western chorus frogs, spotted frogs, rubber boas, racers, western garter snakes, and water shrews are expected to respond primarily to alterations in stream and bank morphology and the loss of still water for amphibian breeding.

Montana, Wyoming↗

USGS2005

Cibola High Levee Pond annual report 2004

This represents the fourth and last annual report of a five year study investigating the early life ecology of the bonytail and razorback sucker at Cibola High Levee Pond. The work in 2004 included: telemetry studies, collection of physical water quality measurements, zooplankton samples, netting fish, the collection of scale samples for aging, predator/prey tank tests and a preliminary analysis of the data base. Juvenile bonytail and razorback suckers were collected this year, demonstrating that natural recruitment occurred for both species. Young from 2004, 2003, and 2002 were all represented in our sample. Unfortunately, we discovered that largemouth bass had also spawned. Approximately 100 young bass were observed during a snorkeling trip in late July. Bass ranged in size from an estimated 5 to 50 cm and were distributed throughout the pond. Attempts to determine the cover preference of 30-cm bonytail met difficulties. Spawning occurred a month earlier than previous years due to an unseasonably warm spring. The combination of warmer temperatures and the vigors of spawning attributed to higher stress and associated mortality of study fish. We replicated our procedures under hatchery conditions on the chance that transmitter attachment was at fault but we experienced similar post-release mortality, including the control fish. This supports the long held contention that bonytail are extremely fragile during and after spawning. In the predator-prey tests, young of every species tested ate razorback sucker larvae. The most aggressive predators tested in 2004 (n = 8 species) were young of the year green sunfish, channel catfish, and common carp. Bullfrog tadpoles and red swamp crayfish also ate razorback sucker larvae and eggs, showing predation is not limited to predatory fish. This work illustrates that early life stages are quite vulnerable to small predators that have easy access to shallow nursery habitats. Remaining work will be finished this coming summer and a final report describing CHLP and the ecology of these fish will be completed by the end of 2005. We offer our assistance to the Fish and Wildlife Service in the pond’s renovation and support for the creation of additional refuge ponds. Funding for this work ends September 2005.

Cibola High Levee Pond↗

USGS2005

GIS compilation of data collected from the Pulley Ridge Deep Coral Reef region

Pulley Ridge is a chain of drowned barrier islands that extends almost 200 km in 60-90 m water depths (Fig. 1). This drowned ridge is located on the Florida Platform in the southeastern Gulf of Mexico about 250 km west of Cape Sable, Florida (Jarrett and others, 2005). These islands formed during the early Holocene marine transgression approximately 12,000 - 14,000 years before present, and were then submerged by sea level rise and preserved near the outer edge of the Florida Platform. The southern portion of Pulley Ridge is the focus of this study. This area hosts zooxanthellate scleractinian corals, green, red and brown macro algae, and a mix of deep and typically shallow-water tropical fishes. This largely photosynthetic community is unique in that it thrives with less than 5% of the light typically associated with shallow-water reefs with similar fauna. Several factors help to account for the existence of this unique deep-water community. First, the underlying drowned barrier islands provide both elevated topography and lithified substrate for the establishment of the hardbottom community. Second, the region is commonly bathed by the Loop Current, which brings relatively clear and warm water to this area. Third, the ridge's position on the continental shelf places it within the thermocline which provides nutrients to the reef during upwelling (Halley and others, 2003). The USGS has made two proposals to resource managers for the designation of marine protected areas based on the geophysical and photographic data in this report. The proposals describe areas that may require some regulatory protection of marine life utilizing the sea floor (Fig. 1). The first proposal is that the area of greatest hermatypic coral cover (Fig. 1) is considered for future management actions and designated a Habitat Area of Particular Concern (HAPC) by the Gulf of Mexico Fishery Management Council. HAPCs are identified on the basis of habitat level considerations: The importance of the ecological function provided by the habitat. The extent to which the habitat is sensitive to human-induced environmental degradation. Whether and to what extent development activities are or will be stressing the habitat. The rarity of the habitat type. The second proposed area is for Coral Essential Fish Habitat (CEFH, Fig. 1). CEFHs are defined as "those waters and substrate necessary to corals for spawning, breeding, feeding, or growth to maturity." The following definitions are provided for clarification: waters is defined as "aquatic areas and their associated physical, chemical, and biological properties that are used by corals" substrate means "sediment, hard bottom, structures underlying the waters, and associated biological communities" necessary means "the habitat required to support a sustainable population and the managed species' contribution to a healthy ecosystem" spawning,breeding, feeding, or growth to maturity covers the full life cycle of a species. The CEFH shown in Figure 1 is the greatest coral cover in the region as determined by the bottom photo and video transects acquired during this study. This report presents the geophysical and photographic data that were collected to describe the surficial and shallow subsurface geologic framework of the area where these deep-water corals are known to occur. The data types include multibeam bathymetry, sidescan-sonar imagery, images of high-resolution seismic-reflection profiles, and bottom photographs. In addition, the tracklines for the seismic data, locations of bottom photographs and camera drifts, and tracklines along which submersible and remotely operated vehicle (ROV) observations were made are contained in the GIS files accompanying this report. Unfortunately, video footage from the camera drifts, submersible, and ROV cruises is not available on this DVD due to the quantity of data. The bottom photograph data set has been previously published (Cross and others, 2004), however it is included in this publication in an effort to integrate the varying data sets in one location. This integration is accomplished through the GIS data included on this DVD.

Florida↗

USGS2007

A core stochastic population projection model for Florida manatees (Trichechus manatus latirostris)

A stochastic, stage-based population model was developed to describe the life history and forecast the population dynamics of the Florida manatee (Trichechus manatus latirostris) in four separate regions of Florida. This population model includes annual variability in survival and reproductive rates, demographic stochasticity, effects of changes in warm-water capacity, and catastrophes. Further, the model explicitly accounts for uncertainty in parameter estimates. This model is meant to serve as a flexible tool for use in assessments relevant to management decision making, and was used in the State of Florida's recent biological status review. The parameter estimates and model structure described herein reflect our understanding of manatee demography at the time that this status review was completed. In the Northwest and Upper St. Johns regions, the model predicts that the populations will increase over time until warm-water capacity is reached, at which point growth will taper off. In the Atlantic region, the model predicts a stable or slightly increasing population over the next decade or so, and then a decrease as industrial warm-water capacity is lost. In the Southwest region, the model predicts a decline over time, driven by high annual mortality in the short-term and exacerbated by loss of industrial warm-water winter refuges over the next 40 years. Statewide, the likelihood of a 50% or greater decline in three manatee generations was 12%; the likelihood of a 20% or greater decline in two generations was 56%. These declines are largely driven by the anticipated loss of warm-water capacity, especially in the Atlantic and Southwest regions. The estimates of probability of extinction within 100 years were 11.9% for the Southwest region, 0.6% for the Northwest, 0.04% for the Atlantic, and <0.02% for the Upper St. Johns. The estimated probability that the statewide population will fall below 1000 animals within 100 years was 2.3%. Thus, while the estimated probability of extinction is low, the model predicts that current and emerging threats are likely to result in a long-term decline in the statewide population and a change in the regional distribution of manatees. Analyses of sensitivity and variance contribution highlight the importance of reducing uncertainty in some life-history parameters, particularly adult survival, temporal variance of adult survival, and long-term warm-water capacity. This core biological model is expected to evolve over time, as better information becomes available about manatees and their habitat, and as new assessment needs arise. We anticipate that this core model will be customized for other state and federal assessments in the near future.

Open-File Report↗

USGS2007

Pilot Study of Sublethal Effects on Fish of Pesticides Currently Used and Proposed for Use on Maine Blueberries

Blueberry pesticides have been detected consistently in some Down East Maine rivers, yet little is known about the sublethal effects of these pesticides on fish early life stages. The Maine blueberry industry is proposing to replace the insecticide ImidanTM (active ingredient phosmet) and the herbicide VelparTM (active ingredient hexazinone), two of the pesticides found in these rivers, with candidate alternatives SpinTor TM (active ingredient spinosad) and Callistso TM (active ingredient mesotrione). Our objective is to evaluate potential sublethal effects of these four formulations before the industry adopts the two candidate alternatives. We exposed zebrafish (Danio rerio) early life stages, from fertilization through larval swim-up, to a range of pesticide concentrations and evaluated their response relative to untreated controls. In this report we provide preliminary data on immune function as well as on parameters in addition to those originally proposed: development and performance fitness. We also provide information on our progress towards optimizing chemical protocols for analyzing the concentration of active ingredient in each of our formulation dosing solutions, another new parameter we added to those originally proposed. Preliminary results indicate that at environmentally realistic concentrations, these pesticides may have no significant effect on innate immunity, development rate or behavior (spontaneous swimming), however further replication is needed to confirm these initial findings. We have also observed some degree of developmental abnormalities in both pesticide-treated and control zebrafish embryos; however, additional replication is underway to determine if these groups differ significantly.

Open-File Report↗

USGS2008

Watershed Regressions for Pesticides (WARP) for Predicting Annual Maximum and Annual Maximum Moving-Average Concentrations of Atrazine in Streams

Regression models were developed for predicting annual maximum and selected annual maximum moving-average concentrations of atrazine in streams using the Watershed Regressions for Pesticides (WARP) methodology developed by the National Water-Quality Assessment Program (NAWQA) of the U.S. Geological Survey (USGS). The current effort builds on the original WARP models, which were based on the annual mean and selected percentiles of the annual frequency distribution of atrazine concentrations. Estimates of annual maximum and annual maximum moving-average concentrations for selected durations are needed to characterize the levels of atrazine and other pesticides for comparison to specific water-quality benchmarks for evaluation of potential concerns regarding human health or aquatic life. Separate regression models were derived for the annual maximum and annual maximum 21-day, 60-day, and 90-day moving-average concentrations. Development of the regression models used the same explanatory variables, transformations, model development data, model validation data, and regression methods as those used in the original development of WARP. The models accounted for 72 to 75 percent of the variability in the concentration statistics among the 112 sampling sites used for model development. Predicted concentration statistics from the four models were within a factor of 10 of the observed concentration statistics for most of the model development and validation sites. Overall, performance of the models for the development and validation sites supports the application of the WARP models for predicting annual maximum and selected annual maximum moving-average atrazine concentration in streams and provides a framework to interpret the predictions in terms of uncertainty. For streams with inadequate direct measurements of atrazine concentrations, the WARP model predictions for the annual maximum and the annual maximum moving-average atrazine concentrations can be used to characterize the probable levels of atrazine for comparison to specific water-quality benchmarks. Sites with a high probability of exceeding a benchmark for human health or aquatic life can be prioritized for monitoring.

Open-File Report↗

USGS2009

Distribution and Joint Fish-Tag Survival of Juvenile Chinook Salmon Migrating through the Sacramento-San Joaquin River Delta, California, 2008

Acoustic telemetry was used to obtain the movement histories of 915 juvenile fall-run Chinook salmon (Oncorhynchus tshawytscha) through the lower San Joaquin River and Sacramento-San Joaquin Delta, California, in 2008. Data were analyzed within a release-recapture framework to estimate survival, route distribution, and detection probabilities among three migration pathways through the Delta. The pathways included the primary route through the San Joaquin River and two less direct routes (Old River and Turner Cut). Strong inferences about survival were limited by premature tag failure, but estimates of fish distribution among migration routes should be unaffected by tag failure. Based on tag failure tests (N = 66 tags), we estimated that only 55-78 percent of the tags used in this study were still functioning when the last fish was detected exiting the study area 15 days after release. Due to premature tag failure, our 'survival' estimates represent the joint probability that both the tag and fish survived, not just survival of fish. Low estimates of fish-tag survival could have been caused by fish mortality or fish travel times that exceeded the life of the tag, but we were unable to differentiate between the two. Fish-tag survival through the Delta (from Durham Ferry to Chipps Island by all routes) ranged from 0.05 +or- 0.01 (SE) to 0.06 +or- 0.01 between the two weekly release groups. Among the three migration routes, fish that remained in the San Joaquin River exhibited the highest joint fish-tag survival (0.09 +or- 0.02) in both weeks, but only 22-33 percent of tagged fish used this route, depending on the week of release. Only 4-10 percent (depending on week) of tagged fish traveled through Turner Cut, but no tagged fish that used this route were detected exiting the Delta. Most fish (63-68 percent, depending on week of release) migrated through Old River, but fish-tag survival through this route (0.05 +or- 0.01) was only about one-half that of fish that remained in the San Joaquin River. Once tagged fish entered Old River, only fish collected at two large water conveyance projects and transported through the Delta by truck were detected exiting the Delta, suggesting that this route was the only successful migration pathway for fish that entered Old River. The rate of entrainment of tagged juvenile salmon into Old River was similar to the fraction of San Joaquin River discharge flowing into Old River, which averaged 63 percent but varied tidally and ranged from 33 to 100 percent daily. Although improvements in transmitter battery life are clearly needed, this information will help guide the development of future research and monitoring efforts in this system.

Open-File Report↗

USGS2009

Distribution, Health, and Development of Larval and Juvenile Lost River and Shortnose Suckers in the Williamson River Delta Restoration Project and Upper Klamath Lake, Oregon: 2008 Annual Data Summary

Federally endangered Lost River sucker Deltistes luxatus and shortnose sucker Chasmistes brevirostris were once abundant throughout their range but populations have declined; they have been extirpated from several lakes, and may no longer reproduce in others. Poor recruitment into the adult spawning populations is one of several reasons cited for the decline and lack of recovery of these species, and may be the consequence of high mortality during juvenile life stages. High larval and juvenile sucker mortality may be exacerbated by an insufficient quantity of suitable rearing habitat. Within Upper Klamath Lake, a lack of marshes also may allow larval suckers to be swept from suitable rearing areas downstream into the seasonally anoxic waters of the Keno Reservoir. The Nature Conservancy (TNC) flooded about 3,600 acres to the north of the Williamson River mouth (Tulana Unit) in October 2007, and about 1,400 acres to the south and east of the Williamson River mouth (Goose Bay Unit) a year later, to retain larval suckers in Upper Klamath Lake, create nursery habitat for suckers, and improve water quality. In collaboration with TNC, the Bureau of Reclamation, and Oregon State University, we began a long-term collaborative research and monitoring program in 2008 to assess the effects of the Williamson River Delta restoration on the early life-history stages of Lost River and shortnose suckers. Our approach includes two equally important aspects. One component is to describe habitat use and colonization processes by larval and juvenile suckers and non-sucker fish species. The second is to evaluate the effects of the restored habitat on the health and condition of juvenile suckers. This report contains a summary of the first year of data collected as a part of this monitoring effort.

Open-File Report↗

USGS2010

Abundance, Timing of Migration, and Egg-to-Smolt Survival of Juvenile Chum Salmon, Kwethluk River, Alaska, 2007 and 2008

To better understand and partition mortality among life stages of chum salmon (Oncorhynchus keta), we used inclined-plane traps to monitor the migration of juveniles in the Kwethluk River, Alaska in 2007 and 2008. The migration of juvenile chum salmon peaked in mid-May and catch rates were greatest when water levels were rising. Movement of chum salmon was diurnal with highest catch rates occurring during the hours of low light (that is, 22:00 to 10:00). Trap efficiency ranged from 0.37 to 4.04 percent (overall efficiency = 1.94 percent). Total abundance of juvenile chum salmon was estimated to be 2.0 million fish in 2007 and 2.9 million fish in 2008. On the basis of the estimate of chum salmon females passing the Kwethluk River weir and age-specific fecundity, we estimated the potential egg deposition (PED) upstream of the weir and trapping site. Egg-to-smolt survival, calculated by dividing the estimate of juvenile chum salmon emigrating past the weir site by the estimate of PED, was 4.6 percent in 2007 and 5.2 percent in 2008. In addition to chum salmon, Chinook salmon O. tshawytscha), coho salmon (O. kisutch), sockeye salmon (O. nerka), and pink salmon (O. gorbuscha), as well as ten other fish species, were captured in the traps. As with chum salmon, catch of these species increased during periods of increasing discharge and peaked during hours of low light. This study successfully determined the characteristics of juvenile salmon migrations and estimated egg-to-smolt survival for chum salmon. This is the first estimate of survival for any juvenile salmon in the Arctic-Yukon-Kuskokwim region of Alaska and demonstrates an approach that can help to partition mortality between freshwater and marine life stages, information critical to understanding the dynamics of salmon in this region.

Open-File Report↗

USGS2010

Distribution and condition of larval and juvenile Lost River and shortnose suckers in the Williamson River Delta restoration project and Upper Klamath Lake, Oregon

Federally endangered Lost River sucker ( Deltistes luxatus ) and shortnose sucker ( Chasmistes brevirostris ) were once abundant throughout their range but populations have declined. They were extirpated from several lakes in the 1920s and may no longer reproduce in others. Poor recruitment to the adult spawning populations is one of several reasons cited for the decline and lack of recovery of these species and may be the consequence of high mortality during juvenile life stages. High larval and juvenile sucker mortality may be exacerbated by an insufficient quantity of suitable or high quality rearing habitat. In addition, larval suckers may be swept downstream from suitable rearing areas in Upper Klamath Lake into Keno Reservoir, which is seasonally anoxic. The Nature Conservancy flooded about 3,600 acres (1,456 hectares) to the north of the Williamson River mouth (Tulana Unit) in October 2007 and about 1,400 acres (567 hectares) to the south and east of the Williamson River mouth (Goose Bay Unit) a year later to retain larval suckers in Upper Klamath Lake, create nursery habitat, and improve water quality. The U.S. Geological Survey joined a long-term research and monitoring program in collaboration with The Nature Conservancy, the Bureau of Reclamation, and Oregon State University in 2008 to assess the effects of the Williamson River Delta restoration on the early life-history stages of Lost River and shortnose suckers. The primary objectives of the research were to describe habitat colonization and use by larval and juvenile suckers and non-sucker fishes and to evaluate the effects of the restored habitat on the health and condition of juvenile suckers. This report summarizes data collected in 2009 by the U.S. Geological Survey as a part of this monitoring effort. The Williamson River Delta appeared to provide suitable rearing habitat for endangered larval Lost River and shortnose suckers in 2008 and 2009. Larval suckers captured in this delta typically were larger than those captured in the adjacent lake habitat in 2008, but the opposite was true for larval shortnose suckers in 2009. Mean sample density was greater for both species in the Williamson River Delta than adjacent lake habitats in both years. Larval suckers captured in the restoration area, however, had less food in their guts compared to those captured in Upper Klamath or Agency Lakes. Differential distribution among sucker species within the Williamson River Delta and between the delta and adjacent lakes indicated that shortnose suckers likely benefited more from the restored Williamson River Delta than Lost River or Klamath largescale suckers ( Catostomus snyderi ). Catch rates in shallow-water habitats with vegetation within the delta were higher for shortnose and Klamath largescale suckers than for larval Lost River suckers in 2008 and 2009.However, catch rates at the mouth of the Williamson River in 2008 and in Upper Klamath Lake in 2009 were higher for larval Lost River suckers than for larvae identified as either shortnose or Klamath largescale suckers. Shortnose suckers also comprised the greatest portion of age-0 suckers captured in the Williamson River Delta in 2008 and 2009. The relative abundance of age-1 shortnose suckers was high in our catches compared to age-1 Lost River suckers in 2009 in the delta and adjacent lakes, which may or may not indicate shortnose suckers experienced better survival than Lost River suckers in 2008. Age-0 and age-1 suckers were similarly distributed throughout the Williamson River Delta in 2008 and 2009. Age-0 suckers used shallow vegetated and unvegetated habitats primarily in mid- to late July in both years. A comparison of catch rates between our study and a concurrent study in Upper Klamath Lake indicated that Goose Bay was the most used habitat in 2009 and the Tulana Unit was the one of the least used habitats in 2008 and 2009 by age-0 suckers. Catch rates for age-1 suckers, however, indicated that bo

Oregon↗

USGS2012

Ecological requirements for pallid sturgeon reproduction and recruitment in the Lower Missouri River: Annual report 2010

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with cooperating research partners and in collaboration with the U.S. Army Corps of Engineers, Missouri River Recovery—Integrated Science Program. The research consists of several interdependent and complementary tasks that engage multiple disciplines. The research tasks in the 2010 scope of work primarily address spawning as a probable factor limiting pallid sturgeon survival and recovery, although limited pilot studies also have been initiated to examine the requirements of early life stages. The research is designed to inform management decisions affecting channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River, and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2010.

South Dakota;Nebraska;Iowa;Missouri↗

USGS2012

Streamflow and water-quality monitoring in response to young-of-year smallmouth bass ( micropterus dolomieu ) mortality in the Susquehanna River and major tributaries, with comparisons to the Delaware and Allegheny Rivers, Pennsylvania, 2008-10

Since 2005, spring hatched young-of-year (YOY) smallmouth bass in Pennsylvania reaches of the Susquehanna River have experienced above-normal mortality when summertime streamflows are near or lower than normal. Stress factors include, but are not limited to, low dissolved oxygen and elevated water temperatures during times critical for survival and development (critical period is May 1 through July 31). At this time (2010), widespread disease and mortality are believed to be more prevalent for YOY smallmouth bass in the Susquehanna River Basin than in the Delaware or Allegheny River Basins. The U.S. Geological Survey began a study in 2008 to investigate water temperature and dissolved oxygen as possible stressors to the YOY smallmouth bass. Monitoring began in 2008 and continued in 2009 and 2010 in selected reaches. Continuous (30-minute intervals) measurements of dissolved oxygen, water temperature, pH, and specific conductance were made during all or parts of the study at stations including, but not limited to, the Delaware River at Trenton, N.J. (station C1), Susquehanna River at Clemson Island (station C4), Juniata River at Newport, Pa. (station C5), Juniata River at Howe Township Park (station C6), Susquehanna River at Harrisburg, Pa. (station C8), and Allegheny River at Acmetonia, Pa. (station C10). At stations C1, C5, and C8, streamflow data also were collected. Streamflow data were not collected at stations C4, C6, and C10; therefore, data from nearby streamgages on the Susquehanna River at Sunbury, Pa. (station N8), the Juniata River at Newport, Pa (station C5), and the Allegheny River at Natrona, Pa. (station C9), were used to represent flow conditions at these stations. Streamflow during the critical period of each year influenced dissolved-oxygen concentrations and water temperature, and was associated with the incidence of disease in YOY smallmouth bass. During the critical period of 2009, station C8 had a median daily streamflow of 26,300 cubic feet per second (ft 3 /s), approximately two times higher than for the critical periods in 2008 and 2010. Diseased YOY smallmouth bass were captured at only 3 sites in 2009 but 19 sites in 2008 and 28 sites in 2010. During relatively low streamflow in the critical periods of 2008 and 2010, dissolved-oxygen concentrations also were lower (more stressful to aquatic life) than in 2009. During the critical period, median daily minimum dissolved-oxygen concentrations in main-channel habitat of the Susquehanna River at station C8 were lower in 2008 and 2010 by 1.2 milligrams per liter (mg/L) and 1.5 mg/L, respectively, in comparison to the median daily minimum concentrations in 2009. Despite the year-to-year differences in dissolved oxygen, results of a comparison of data for station C8 from each year of the study period with historical data from 1974–79 indicate daily minimum dissolved-oxygen concentrations in all 3 years of the study were significantly lower than those from the historical dataset (p-values less than 0.05). Although lower streamflows for critical periods of 2008–10 may help explain statistical differences in dissolved oxygen between the two time periods, other factors such as long-term streamwater warming trends also may play a role. Median daily minimum dissolved-oxygen concentration in the microhabitat of the Susquehanna River at Clemson Island (station C4) was 1.6 mg/L lower in 2008 than 2009. No data were collected at station C4 in 2010. For the microhabitat of the Juniata River near Howe Township Park (station C6), median daily minimum dissolved-oxygen concentrations were about 0.6 mg/L lower in 2008 than in 2010. At station C6, no data were collected in 2009. Nighttime concentrations of dissolved oxygen in microhabitats at stations C4 and C6 were at times lower than the 5.0-mg/L criterion established by the U.S. Environmental Protection Agency for early life stages of warm-water fish. The most frequent occurrence of dissolved oxygen less than 5.0 mg/L was at station C4 (31 of 92 days in the critical period of 2008). The longest duration that dissolved oxygen was lower than 5.0 mg/L was 8.5 hours (station C4; 23:30 on June 10, 2008, to 08:00 on June 11, 2008). Median daily maximum water temperatures in the main channel of the Susquehanna River at station C8 were 4.0 degrees Celsius (°C) higher in 2008 and 4.3°C warmer in 2010 than in 2009 during the critical periods. At station C8, the water temperatures during the critical periods of all 3 years were significantly warmer (p-values <0.05) than during the critical periods of 1974–79. Year-to-year water-temperature differences in the main-channel habitat of the Juniata River at station C5 were slightly less than year-to-year differences in the Susquehanna River at station C8. During the critical periods, the water temperature at station C5 was 3.5°C warmer in 2008 and 3.3°C warmer in 2010 than in 2009. These results are consistent with warming trends documented in other streams of the northeastern United States with much more robust water-temperature datasets. For the critical period of each year, dissolved oxygen in the Susquehanna River at station C8 typically was 1.5 to 3.0 mg/L lower than in the Delaware River at station C1 and the Allegheny River at station C10. Median daily maximum water temperatures during the critical period of each year ranged from 1.6 to 2.7°C warmer at station C8 than at stations C1 and C10.

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