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USGS2006

The importance of diverse data types to calibrate a watershed model of the Trout Lake Basin, Northern Wisconsin, USA

As part of the USGS Water, Energy, and Biogeochemical Budgets project and the NSF Long-Term Ecological Research work, a parameter estimation code was used to calibrate a deterministic groundwater flow model of the Trout Lake Basin in northern Wisconsin. Observations included traditional calibration targets (head, lake stage, and baseflow observations) as well as unconventional targets such as groundwater flows to and from lakes, depth of a lake water plume, and time of travel. The unconventional data types were important for parameter estimation convergence and allowed the development of a more detailed parameterization capable of resolving model objectives with well-constrained parameter values. Independent estimates of groundwater inflow to lakes were most important for constraining lakebed leakance and the depth of the lake water plume was important for determining hydraulic conductivity and conceptual aquifer layering. The most important target overall, however, was a conventional regional baseflow target that led to correct distribution of flow between sub-basins and the regional system during model calibration. The use of an automated parameter estimation code: (1) facilitated the calibration process by providing a quantitative assessment of the model's ability to match disparate observed data types; and (2) allowed assessment of the influence of observed targets on the calibration process. The model calibration required the use of a 'universal' parameter estimation code in order to include all types of observations in the objective function. The methods described in this paper help address issues of watershed complexity and non-uniqueness common to deterministic watershed models. ?? 2005 Elsevier B.V. All rights reserved.

Journal of Hydrology↗

USGS2020

How repeatable is CTmax within individual brook trout over short- and long-time intervals?

As stream temperatures increase due to factors such as heated runoff from impervious surfaces, deforestation, and climate change, fish species adapted to cold water streams are forced to move to more suitable habitat, acclimate or adapt to increased thermal regimes, or die. To estimate the potential for adaptation, a (within individual) repeatable metric of thermal tolerance is imperative. Critical thermal maximum (CTmax) is a dynamic test that is widely used to measure thermal tolerance across many taxa and has been used in fishes for decades, but its repeatability in most species is unknown. CTmax tests increase water temperature steadily over time until loss of equilibrium (LOE) is achieved. To determine if CTmax is a consistent metric within individual fish, we measured CTmax on the same lab-held individually-marked adult brook trout Salvelinus fontinalis at three different times (August & September 2016, September 2017). We found that CTmax is a repeatable trait (Repeatability ± S.E.: 0.48 ± 0.14). CTmax of individuals males was consistent over time, but the CTmax of females increased slightly over time. This result indicates that CTmax is a robust, repeatable estimate of thermal tolerance in a cold-water adapted fish.

Journal of Thermal Biology↗

USGS2006

Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus

The DNA vaccine based on the glycoprotein gene of Infectious hematopoietic necrosis virus induces a non-specific anti-viral immune response and long-term specific immunity against IHNV. This study characterized gene expression responses associated with the early anti-viral response. Homozygous rainbow trout were injected intra-muscularly (I.M.) with vector DNA or the IHNV DNA vaccine. Gene expression in muscle tissue (I.M. site) was evaluated using a 16,008 feature salmon cDNA microarray. Eighty different genes were significantly modulated in the vector DNA group while 910 genes were modulated in the IHNV DNA vaccinate group relative to control group. Quantitative reverse-transcriptase PCR was used to examine expression of selected immune genes at the I.M. site and in other secondary tissues. In the localized response (I.M. site), the magnitudes of gene expression changes were much greater in the vaccinate group relative to the vector DNA group for the majority of genes analyzed. At secondary systemic sites (e.g. gill, kidney and spleen), type I IFN-related genes were up-regulated in only the IHNV DNA vaccinated group. The results presented here suggest that the IHNV DNA vaccine induces up-regulation of the type I IFN system across multiple tissues, which is the functional basis of early anti-viral immunity.

Molecular Immunology↗

USGS2006

Protective immunity and lack of histopathological damage two years after DNA vaccination against infectious hematopoietic necrosis virus in trout

The DNA vaccine pIHNw-G encodes the glycoprotein of the fish rhabdovirus infectious hematopoietic necrosis virus (IHNV). Vaccine performance in rainbow trout was measured 3, 6, 13, 24, and 25 months after vaccination. At three months all fish vaccinated with 0.1 μg pIHNw-G had detectable neutralizing antibody (NAb) and they were completely protected from lethal IHNV challenge with a relative percent survival (RPS) of 100% compared to control fish. Viral challenges at 6, 13, 24, and 25 months post-vaccination showed protection with RPS values of 47–69%, while NAb seroprevalence declined to undetectable levels. Passive transfer experiments with sera from fish after two years post-vaccination were inconsistent but significant protection was observed in some cases. The long-term duration of protection observed here defined a third temporal phase in the immune response to IHNV DNA vaccination, characterized by reduced but significant levels of protection, and decline or absence of detectable NAb titers. Examination of multiple tissues showed an absence of detectable long-term histopathological damage due to DNA vaccination.

Vaccine↗

USGS1999

Liquid chromatographic determination of benzocaine and N-acetylbenzocaine in the edible fillet tissue from rainbow trout

A method was developed for determining benzocaine and N-acetylbenzocaine concentrations in fillet tissue of rainbow trout. The method involves extracting the analytes with acetonitrile, removing lipids or hydrophobic compounds from the extract with hexane, and providing additional clean-up with solid-phase extraction techniques. Analyte concentrations are determined using reversed-phase high-performance liquid chromatographic techniques with an isocratic mobile phase and UV detection. The accuracy (range, 92 to 121%), precision (R.S.D., <14%), and sensitivity (method quantitation limit, <24 ng/g) for each analyte indicate the usefulness of this method for studies characterizing the depletion of benzocaine residues from fish exposed to benzocaine. Copyright (C) 1999.

Journal of Chromatography A↗

USGS1998

Importance of rearing-unit design and stocking density to the behavior, growth and metabolism of lake trout (Salvelinus namaycush)

Juvenile lake trout ( Salvelinus namaycush ) were held at different stocking densities (48 and 96 kg m −3 ) in rearing-units of different design (rectangular plug-flow, circular and cylindrical cross-flow) and the effects on behavior, growth and metabolism were examined. Ambient light levels and current velocities were measured in each of three tank sectors (upstream, middle and downstream) to determine their relative contributions to fish behavior and distribution. Rearing-unit design affected orientation to current, contact with surfaces, agonistic responses, turn rates and avoidance of or contact with other fish. Stocking density primarily affected contact with tank surfaces, avoidance and contact with other fish. Fish in circular tanks distributed themselves uniformly, whereas those in plug-flow tanks crowded upstream and those in cross-flow tanks congregated downstream. Stocking density affected fish distribution most in cross-flow and least in circular tanks. Ambient light, current velocity and total in situ aggression modified fish distribution at low stocking density, but at high density the effects of current velocity and total aggression were undetectable. Growth and food conversion were best in plug-flow, followed by cross-flow and then circular tanks. Net ammonia excretion and oxygen consumption were highest in circular tanks and lowest in cross-flow (NH 3 ) or cross-flow and plug-flow (O 2 ) tanks. Ammonia production was correlated with stocking density, but oxygen consumption was unrelated to density. Results demonstrate the interrelatedness of abiotic and biotic factors in fish culture and the ability to control fish behavior, growth and metabolism through the alteration of several physical and biological variables in the rearing unit.

Aquacultural Engineering↗

USGS2003

Starvation resistance in lake trout fry

Newly hatched fry were acclimated to 7 or 12°C and either fed daily (controls) or denied food for varying lengths of time and then fed daily until the end of the study (day 91 at 7°C and day 43 at 12°C). Growth was reduced by delays in the onset of feeding of 27 or more days at 7°C and 7 or more days at 12°C. Mortality of fry unfed for more than 34 days at 7°C, or more than 21 days at 12°C, was higher than among controls. Daily mortality increased with the length of the food deprivation period and did not cease immediately when food was made available, but reached zero by the end of the study. Mortality among unfed fry reached 50% in about 59 days at 7°C and 32 days at 12°C. Study results permitted calculation of the "point-of-no-return" (PNR) mortality, which included the mortality that occurred during the period of food deprivation, and also the delayed component of mortality that was directly attributable to starvation and that occurred after food was made available. The PNR for 50% mortality for food-deprived fry occurred after 52 days at 7°C and 24 days at 12°C. Thus, both measures of mortality indicate that lake trout fry would be highly resistant to death by starvation in the thermal habitat they would be expected to occupy in the Great Lakes. We conclude that a more likely adverse effect of reduced food availability would result from a reduction in growth rate that extends the length of time fry remain small and vulnerable to predation by adult alewives and other non-native fishes with which they associate.

Journal of Great Lakes Research↗

USGS1990

Blue-sac disease in Lake Ontario lake trout

Egg lots from individual females of Seneca strain lake trout ( Salvelinus namaycush ), captured from Lake Ontario and incubated at 7°–9°C, showed a very high incidence of blue-sac disease and associated mortality. Losses were shown to be female dependent. Some of the eggs were found to be infected by a myxobacterium ( Cytophaga sp.) that may have been transmitted to the fry through the egg and/or sperm. This myxobacterial infection may have been related to the blue-sac disease observed in some egg lots. Incubation at 1.7°–3.0° C significantly reduced the incidence of blue-sac disease and mortality in the replicated egg lots.

Journal of Great Lakes Research↗

USGS1993

Polychlorinated biphenyls in Great Lakes lake trout and their eggs: relations to survival and congener composition 1979-1988

Eggs taken from lake trout ( Salvelinus namaycush ) captured from various Great Lakes between 1979 and 1988 were analyzed for individual polychlorinated biphenyl (PCB) congeners. Eggs from the same fish had been previously reared through hatching and early fry development to ascertain egg quality. Tissues from a subsample of the adult females that provided eggs were similarly analyzed. Significant relations were found between embryonic mortality (eggs dying between fertilization and hatch) and the concentrations of total PCBs in both the eggs and adults. PCB concentrations were also negatively correlated with the percentage of normal fry that successfully hatched, but no relation was found between PCB residues and fry mortality. Pattern recognition analysis indicated that the PCB congener fingerprint for eggs from Lake Superior was different than that of eggs from Lakes Michigan, Huron, and Ontario. A difference between PCB residue patterns was also identified between eggs and the parent fish. While this difference indicated some preferential deposition of congeners in the eggs, the difference was not attributed to the toxic AHH-active congeners. No difference in the PCB pattern was observed over the 10 years of sample collection, demonstrating that concentrations of individual congeners are declining at similar rates.

Journal of Great Lakes Research↗

USGS1991

In vivo and in vitro transfer of trout spleen sections for early analysis of the immune response

To determine the earliest time after in vivo immunisation that the spleen could be excised and held in vitro to detect an immune response, lake trout ( Salvelinus namaycush ) were exposed to DNP-Ficoll or Yersinia ruckeri O antigen administered by intraperitoneal injection or by bath. The spleens were excised from the fish at selected times after immunisation, placed in vitro and held in tissue culture media at 14°C until 10 days after the in vivo immunisation. They then were analysed for an immune response by counting the numbers of plaqueforming cells (PFC). PFC were first detected in samples taken 3 days after injection with either antigen. With bath immunisation, however, PFC were first seen 6 days post-immunisation when using the Y. ruckeri O antigen and no PFC above background levels appeared in fish bathed in the DNP-Ficoll solution. On day 10 after immunisation, the spleens taken directly from immunised fish always produced more PFC than when the spleens were taken through in vitro culture. A unique feature of this method, is that an immune response to an antigen may be detected by excising the spleen and holding it in in vitro culture without necessarily holding the fish for long periods of time after antigen injection or bath. This technique also adds more information on how rapidly the bacterins or antigens are processed by fish to initiate an immune response.

Fish and Shellfish Pathology↗

USGS2025

Evaluation of 6PPD-quinone lethal toxicity and sublethal effects on disease resistance and swimming fitness in coastal cutthroat trout (Oncorhynchus clarkii clarkii)

6PPD-quinone (6PPDQ), derived from the tire-protectant 6PPD reacting with ozone, is an emerging contaminant of concern owing to its role in coho salmon ( Oncorhynchus kisutch ) deaths via urban runoff mortality syndrome (URMS). Given the impact of 6PPDQ on aquatic life in urban streams, we addressed the acute toxicity of 6PPDQ exposure on coastal cutthroat trout (CCT) ( Oncorhynchus clarkii clarkii ), a species sympatric with coho salmon in natal watersheds. Using static exposures coupled with analytical chemistry, we determined the 24-h LC 50 values for alevin (297.2 ng/L), swim-up fry (39.6 ng/L), 5-month parr (103.3 ng/L), and 13-month juveniles (185.9 ng/L)─values similar to toxicity observed in coho salmon. Additionally, the 96-h LC 50 (77.6 ng/L) was 2.4 times more lethal for juvenile CCT. We assessed potential effects of sublethal 6PPDQ exposure on disease resistance to infectious hematopoietic necrosis (IHN), an endemic viral disease of Pacific salmon, and to swimming performance. Sublethal 6PPDQ (53.6 ng/L) did not affect survival of parr exposed to IHN virus compared to virus alone. Conversely, 6PPDQ exposure as low as 72.2 ng/L significantly reduced 15- and 24-month juvenile swimming performance, and 120.5 ng/L 6PPDQ increased blood hematocrit. Overall, CCT are the second most sensitive species tested to date for 6PPDQ sensitivity which further emphasizes the need for identifying alternatives to 6PPD.

Environmental Science and Technology↗

USGS2004

Are brook trout streams in Western Virginia and Shenandoah National Park recovering from acidification?

Streamwater composition data obtained through periodic sampling of streams that support brook trout ( Salvelinus fontinalis ) in the mountains of western Virginia were examined for evidence of recovery from acidification during the 1988−2001 period. Measurements of sulfate deposition in precipitation indicate that sulfate deposition in the region declined approximately 40% between 1985 and 2000. While no significant regional trends in acid−base constituents were observed for the set ( n = 65) of western Virginia study streams, significant regional trends were observed for a subset ( n = 14) of streams in Shenandoah National Park (SNP). For the subset of SNP streams, the median increase in acid-neutralizing capacity (ANC) was 0.168 μequiv L -1 year -1 and the median decrease in sulfate concentration was −0.229 μequiv L -1 year -1 . Although these trends are consistent with recovery from acidification, the degree of apparent recovery is small compared to estimates of historic acidification in SNP streams and much less than observed in other, more northern regions in the United States. Correlation between sulfate concentration trends and current sulfate concentrations in streamwater suggests that recovery from stream acidification in the western Virginia region is determined by sulfur retention processes in watershed soils. A transient increase in nitrate concentrations that occurred among some western Virginia streams following forest defoliation by the gypsy moth ( Lymantria dispar ) complicates interpretation of the observed patterns of change in acid−base status.

Virginia↗

USGS2005

Residues of the lampricides 3-trifluoromethyl-4-nitrophenol and niclosamide in muscle tissue of rainbow trout

Rainbow trout (Oncorhyncus mykiss) were exposed to the 14C- labeled lampricide 3-trifluoromethyl-4-nitrophenol (TFM) (2.1 mg/L) or niclosamide (0.055 mg/L) in an aerated static water bath for 24 h. Fish were sacrificed immediately after exposure. Subsamples of skin-on muscle tissue were analyzed for residues of the lampricides. The primary residues in muscle tissue from fish exposed to TFM were parent TFM (1.08 ?? 0.82 nmol/g) and TFM-glucuronide (0.44 ?? 0.24 nmol/g). Muscle tissue from fish exposed to niclosamide contained niclosamide (1.42 ?? 0.51 nmol/g), niclosamide-glucuronide (0.0644 ?? 0.0276 nmol/g), and a metabolite not previously reported, niclosamide sulfate ester (1.12 ?? 0.33 nmol/g).

Journal of Agricultural and Food Chemistry↗

USGS1987

Inheritance of duplicated fumarase and phosphoglucomutase loci in lake trout (Salvelinus namaycush)

Two polymorphic, duplicated loci (fumarase-1,2 and phosphoglucomutase-3,4), previously undescribed in salmonids, were examined in lake trout to determine their electrophoretic expression, mode of inheritance, and linkage associations. Both loci appear to be located on chromosomes which show residual tetrasomy. Neither locus pair shows joint segregation with other loci examined or with each other.

Heredity↗

USGS2000

An evaluation of restoration efforts in fishless lakes stocked with exotic trout

Detrimental effects of introduced fishes on native amphibian populations have prompted removal of introduced cutthroat (Oncorhynchus clarki), rainbow (Oncorhynchus mykiss), and brook trout (Salvelinus fontinalis) from naturally fishless lakes at Mt. Rainier National Park, Washington (U.S.A.). Using paleolimnological indicators (diatoms, invertebrates, and sediment characteristics) in eight 480-year-old sediment cores from eight lakes, we (1) derived estimates of baseline environmental conditions and natural variation, (2) assessed the effects of stocking naturally fishless lakes, and (3) determined whether lakes returned to predisturbance conditions after fish removal (restoration). Diatom floras were relatively stable between 315 and 90 years before present in all lakes; we used this time period to define lake-specific "baseline" conditions. Dissimilarity analyses of diatoms revealed sustained, dramatic changes in diatom floras that occurred approximately 80 years ago (when fish were introduced) in four of five stocked lakes, whereas the diatom floras in two unstocked lakes had not changed significantly in the last 315 years. Diatoms were not preserved in an eighth lake. State changes also occurred in two lakes over 200 years before European settlement of the Pacific Northwest. Preserved invertebrate densities fluctuated dramatically over time in all cores, providing a poor reference for assessing the effects of fishes. Nevertheless, fish-invertebrate interactions have been demonstrated in other paleolimnological studies and may be useful for lower-elevation or more productive lakes. Because diatom communities have not returned to predisturbance assemblages in restored lakes, even 20-30 years after fish removal, we conclude that Mt. Rainier lakes were not successfully restored by the removal of fishes.

Conservation Biology↗

USGS2003

Combining inferences from models of capture efficiency, detectability, and suitable habitat to classify landscapes for conservation of threatened bull trout

Effective conservation efforts for at-risk species require knowledge of the locations of existing populations. Species presence can be estimated directly by conducting field-sampling surveys or alternatively by developing predictive models . Direct surveys can be expensive and inefficient, particularly for rare and difficult-to-sample species, and models of species presence may produce biased predictions. We present a Bayesian approach that combines sampling and model -based inferences for estimating species presence. The accuracy and cost-effectiveness of this approach were compared to those of sampling surveys and predictive models for estimating the presence of the threatened bull trout (Salvelinus confluentus) via simulation with existing models and empirical sampling data. Simulations indicated that a sampling-only approach would be the most effective and would result in the lowest presence and absence misclassification error rates for three thresholds of detection probability. When sampling effort was considered, however, the combined approach resulted in the lowest error rates per unit of sampling effort. Hence, lower probability-of-detection thresholds can be specified with the combined approach, resulting in lower misclassification error rates and improved cost-effectiveness.

Conservation Biology↗

USGS2024

Before the fire: Predicting burn severity and potential post-fire debris-flow hazards to Colorado River Cutthroat Trout (Oncorhynchus clarkii pleuriticus) conservation populations

Background Colorado River Cutthroat Trout (CRCT; Oncorhynchus clarkii pleuriticus ) conservation populations may be at risk from wildfire and post-fire debris flows hazards. Aim To predict burn severity and potential post-fire debris flow hazard classifications to CRCT conservation populations before wildfires occur. Methods We used remote sensing, spatial analyses, and machine learning to model 28 wildfire incidents (2016–2020) and spatially predict burn severity from pre-wildfire environmental factors to evaluate the likelihood (%) and volume (m 3 ) hazard classification of post-fire debris flow. Key results Burn severity was best predicted by fuels, followed by topography, physical ecosystem conditions, and weather (mean adjusted R 2 = 0.54). Predictions of high or moderate burn severity covered 1.1 (15% of study area) and 1.5 (19% of study area) million ha, respectively, and varied by watershed. Combined high or moderate debris flow hazard classification included 80% of stream reaches with conservation populations and 97% of conservation population point nodes. Conclusions Predicted burn severity and potential post-fire debris flow indicated moderate to high hazard for CRCT conservation populations native to the Green and Yampa rivers of the Upper Colorado River Basin. Implications Future management actions can incorporate predicted burn severity and potential post-fire debris flow to mitigate impacts to CRCT and other at-risk resource values before a wildfire occurs.

Colorado, Utah, Wyoming↗

USGS2011

Seasonally dynamic diel vertical migrations of Mysis diluviana , coregonine fishes, and siscowet lake trout in the pelagia of western Lake Superior

Diel vertical migrations are common among many aquatic species and are often associated with changing light levels. The underlying mechanisms are generally attributed to optimizing foraging efficiency or growth rates and avoiding predation risk (μ). The objectives of this study were to (1) assess seasonal and interannual changes in vertical migration patterns of three trophic levels in the Lake Superior pelagic food web and (2) examine the mechanisms underlying the observed variability by using models of foraging, growth, and μ. Our results suggest that the opossum shrimp Mysis diluviana , kiyi Coregonus kiyi , and siscowet lake trout Salvelinus namaycush migrate concurrently during each season, but spring migrations are less extensive than summer and fall migrations. In comparison with M. diluviana , kiyis, and siscowets, the migrations by ciscoes C. artedi were not as deep in the water column during the day, regardless of season. Foraging potential and μ probably drive the movement patterns of M. diluviana , while our modeling results indicate that movements by kiyis and ciscoes are related to foraging opportunity and growth potential and receive a lesser influence from μ. The siscowet is an abundant apex predator in the pelagia of Lake Superior and probably undertakes vertical migrations in the water column to optimize foraging efficiency and growth. The concurrent vertical movement patterns of most species are likely to facilitate nutrient transport in this exceedingly oligotrophic ecosystem, and they demonstrate strong linkages between predators and prey. Fishery management strategies should use an ecosystem approach and should consider how altering the densities of long-lived top predators produces cascading effects on the nutrient cycling and energy flow in lower trophic levels.

Transactions of the American Fisheries Society↗