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USGS2014

Great Lakes restoration success through science: U.S. Geological Survey accomplishments 2010 through 2013

The Great Lakes (Superior, Michigan, Huron, Erie, and Ontario) are the largest group of freshwater lakes on Earth and serve as an important source of drinking water, transportation, power, and recreational opportunities for the United States and Canada. They also support an abundant commercial and recreational fishery, are crucial for agriculture, and are essential to the economic vitality of the region. The Great Lakes support a wealth of biological diversity, including over 200 globally rare plants and animals and more than 40 species that are found nowhere else in the world. However, more than a century of environmental degradation has taken a substantial toll on the Great Lakes. To stimulate and promote the goal of a healthy Great Lakes region, President Obama and Congress created the Great Lakes Restoration Initiative (GLRI) in 2009. The GLRI is an interagency collaboration that seeks to address the most significant environmental problems in the Great Lakes ecosystem. The GLRI is composed of five focus areas that address these issues: Cleaning up toxic substances and Areas of Concern, Preventing and controlling invasive species, Promoting nearshore health, Protecting and restoring habitat and wildlife, Tracking progress and working with partners. As of August 2013, the GLRI had funded more than 1,500 projects and programs of the highest priority to meet immediate cleanup, restoration, and protection needs. These projects use scientific analyses as the basis for identifying the restoration needs and priorities for the GLRI. Results from the science, monitoring, and other on-the-ground actions by the U.S. Geological Survey (USGS) provide the scientific information needed to help guide the Great Lakes restoration efforts. This document highlights a selection of USGS projects for each of the five focus areas through 2013, demonstrating the importance of science for restoration success. Additional information for these and other USGS projects that are important for Great Lakes restoration is available at http://cida.usgs.gov/glri/glri-catalog/ .

Great Lakes↗

USGS2000

Shifts in depth distributions of alewives, rainbow smelt, and age-2 lake trout in southern Lake Ontario following establishment of Dreissenids

In the mid-1990s, biologists conducting assessments of fish stocks in Lake Ontario reported finding alewives Alosa pseudoharengus , rainbow smelt Osmerus mordax , and juvenile lake trout Salvelinus namaycush at greater depths than in the mid-1980s. To determine if depth distributions shifted coincident with the early 1990s colonization of Lake Ontario by exotic Dreissena mussels, we calculated mean depth of capture for each of the three species during trawl surveys conducted annually during 1978–1997 and examined the means for significant deviations from established patterns. We found that mean capture depth of alewives, rainbow smelt, and age-2 lake trout shifted deeper during the build up of the dreissenid population in Lake Ontario but that timing of the shift varied among seasons and species. Depth shifts occurred first for rainbow smelt and age-2 lake trout in June 1991. In 1992, alewives shifted deeper in June followed by age-2 lake trout in July–August. Finally, in 1993 and 1994, the distribution of lake trout and alewives shifted in April–May. Reasons why the three fishes moved to deeper water are not clear, but changes in distribution were not linked to temperature. Mean temperature of capture after the depth shift was significantly lower than before the depth shift except for alewives in April–May. Movement of alewives, rainbow smelt, and age-2 lake trout to colder, deeper water has the potential to alter growth and reproduction schedules by exposing the fish to different temperature regimes and to alter the food chain, increasing predation on Mysis relicta in deep water and decreasing alewife predation on lake trout fry over nearshore spawning grounds in spring.

Transactions of the American Fisheries Society↗

USGS2003

Reconnaissance-level application of physical habitat simulation in the evaluation of physical habitat limits in the Animas Basin, Colorado

The Animas River is in southwestern Colorado and flows mostly to the south to join the San Juan River at Farmington, New Mexico (Figure 1). The Upper Animas River watershed is in San Juan County, Colorado and is located in the San Juan Mountains. The lower river is in the Colorado Plateau country. The winters are cold with considerable snowfall and little snowmelt in the mountains in the upper part of the basin. The lower basin has less snow but the winters are still cold. The streamflows during the winter are low and reasonably stable. The native trout in the Animas Basin is the cutthroat trout. Few native trout remain and the trout found in the upper watershed are brook trout with rainbow and brown trout in the lower river. There is considerable metal contamination in the upper basin near Silverton but a brook trout fishery does exist in the Animas River from just above Howardsville to where the Animas joins Cement Creek in Silverton. There are two principle objectives of the habitat studies in the Animas Basin: (1) to improve understanding of the fate of sediment from mining operations from the view point of physical habitat impacts, and (2) to determine if reconnaissance level physical habitat studies can be useful in understanding the impacts of mining on the aquatic ecosystem. Part of the project was to apply the Physical Habitat Simulation System (PHABSIM) to selected locations in the Upper Animas River Basin, Colorado in order to demonstrate the importance of physical habitat in evaluating the efficacy of mined land remediation activities. Physical habitat analysis included the use of sedimentation variables in physical habitat simulations. A map of the Upper Animas Basin is presented in Figure 2. The project involves collecting data for the following locations: Animas River above Magee Creek; Animas River above Howardsville; Animas River below Howardsville; Animas River above Silverton at Hillsdale Cemetery; Animas River at Silverton; Cement Creek above Silverton; Cement Creek at Silverton; Mineral Creek at Powerline above Silverton; Mineral Creek at Campground; South Mineral Creek at Overflow Campground; Mineral Creek above Bear Creek; Mineral Creek at Silverton; Animas River below Silverton; and Animas River at Elk Park. Bed material samples were collected at each site. These included samples of the armour, the substrate, and sand and fines deposited on the surface. At selected sites the stream morphology was measured. These measurements included one to three cross sections, stream discharge, and water surface elevations. The data are located in the files of the Fort Collins Science Center.

Colorado, New Mexico↗

USGS2002

Simulation of hydrodynamics, temperature, and dissolved oxygen in Beaver Lake, Arkansas, 1994-1995

The tailwaters of Beaver Lake and other White River reservoirs support a cold-water trout fishery of significant economic yield in northwestern Arkansas. The Arkansas Game and Fish Commission has requested an increase in existing minimum flows through the Beaver Lake dam to increase the amount of fishable waters downstream. Information is needed to assess the impact of additional minimum flows on temperature and dissolved-oxygen qualities of reservoir water above the dam and the release water. A two-dimensional, laterally averaged hydrodynamic, thermal and dissolved-oxygen model was developed and calibrated for Beaver Lake, Arkansas. The model simulates surface-water elevation, currents, heat transport and dissolved-oxygen dynamics. The model was developed to assess the impacts of proposed increases in minimum flows from 1.76 cubic meters per second (the existing minimum flow) to 3.85 cubic meters per second (the additional minimum flow). Simulations included assessing (1) the impact of additional minimum flows on tailwater temperature and dissolved-oxygen quality and (2) increasing initial water-surface elevation 0.5 meter and assessing the impact of additional minimum flow on tailwater temperatures and dissolved-oxygen concentrations. The additional minimum flow simulation (without increasing initial pool elevation) appeared to increase the water temperature (<0.9 degrees Celsius) and decrease dissolved oxygen concentration (<2.2 milligrams per liter) in the outflow discharge. Conversely, the additional minimum flow plus initial increase in pool elevation (0.5 meter) simulation appeared to decrease outflow water temperature (0.5 degrees Celsius) and increase dissolved oxygen concentration (<1.2 milligrams per liter) through time. However, results from both minimum flow scenarios for both water temperature and dissolved oxygen concentration were within the boundaries or similar to the error between measured and simulated water column profile values.

Water-Resources Investigations Report↗

USGS2019

Life-history model for sockeye salmon (Oncorhynchus nerka) at Lake Ozette, northwestern Washington—Users' guide

Salmon populations spawning in the Lake Ozette watershed of northwestern Washington were once sufficiently abundant to support traditional Tribal fisheries, and were later harvested by settlers. However, in 1974 and 1975, the sockeye salmon ( Oncorhynchus nerka ) harvest decreased to 0 from a high of more than 17,500 in 1949, thus stimulating research into the causes of decrease, which resulted in eventual listing of the population as threatened under the Endangered Species Act in 1999. The listing status was upheld in 2005 and 2014 following 5-year reviews. Meanwhile, research results were compiled in a limiting factors analysis (LFA) and a recovery plan was developed. Although there has been some improvement in sockeye abundance since listing, the numbers remain too low to allow harvest and it is not yet clear which of the many potential limiting factors are most consequential. As part of the LFA process, a population model was developed to determine values of life-history parameters that would enable the population to survive for 100 years. The model was based on the best available data, but data are limited for the Lake Ozette system. Results informed the qualitative assessment of the importance of limiting factors used to develop the recovery plan for Lake Ozette sockeye. The model was built in Microsoft Excel ® and is difficult to use. The purpose of the model described herein is to synthesize the results of the LFA in a form that can be manipulated by resource managers and the public to create scenarios, test hypotheses, and observe sensitivities of results to changes in parameters. The goal is to provide a tool that enables research, monitoring and management to be focused on the most impactful elements and processes, including identifying the information gaps that are most critical to fill.

Washington↗

USGS1983

Water resources of the Tulalip Indian Reservation, Washington

Water will play a significant role in the future development of the Tulalip Indian Reservation. Ground-water resources are sufficient to supply several times the 1978 population. Potential problems associated with increased ground-water development are saltwater encroachment in the coastal areas and septic-tank contamination of shallow aquifers. There are sufficient good-quality surface-water resources to allow for significant expansion of the tribe)s fisheries activities. The tribal well field is the only place where the ground-water system has been stressed) resulting in declining water levels (1,5 feet per year), The well field has a useful life of at least 1.5-20 years, This can be increased by drilling additional wells to expand the present well field, Inflow of water to the reservation is in the form of precipitation (103 cubic feet per second) ft3/s)) surface-water inflow (13 ft3/s)) and ground-water inflow (4 ft3/s), Outflow is as evapotranspiration (62 ft3/s)) surface-water outflow (40 ft3/s)) and ground-water outflow (18 ft3/s), Total inflow and outflow are equal (120 ft3/s). Ground water is generally suitable for domestic use without treatment) but a serious quality problem is the presence of coliform bacteria in some shallow wells, High values of turbidity and color and large concentrations of iron and manganese are common problems regarding the esthetic quality of the water, In a few places, large concentrations of chloride and dissolved solids indicate the possibility of saltwater encroachment, but no ongoing trend has been identified, Surface waters have been observed to contain undesirably high concentrations of total phosphorus and total and fecal-coliform bacteria) and to have temperatures too high for fish-rearing. The concentration of nutrients appears to be related to flow conditions. Nitrate and total nitrogen are greater in wet-season runoff than during low-flow periods) and total phosphorus shows an inverse relationship. Total phosphorus and ammonia concentrations are greatest in dry-season storm runoff. Generally) surface-water quality is adequate for fish-rearing and (with treatment) for public supply,

Open-File Report↗

USGS1964

Age and growth of the round whitefish in Lake Michigan

The round whitefish, though rarely abundant, is widely distributed in northern waters. It is one of the least studied of the coregonines; the present report is but the second for Great Lakes waters. Commercial production in Lake Michigan has been tightly confined to the northern portion. The period 1924-30 showed the best production: 200,000 to 359,000 pounds. Since 1956, production has been around 10,000 pounds or less. The present age and growth study is based on 208 fish collected by gill net in December 1951. The relation between total length in inches (L) and the weight in ounces ( W ) is described by the equation log W = -2.7232 + 3.2940 log L. Age-group III made up 66.3 percent, and age-group IV, 20.6 percent of the sample; age-groups V, VI, and VII combined contributed only 5.9 percent. The average length for all fish in the sample was 14.5 inches. Growth was calculated from a previously published linear body-scale relation with an intercept of 1.1 inches on the axis of fish length. The increments of calculated length declined steadily from a maximum of 4.6 inches the first year to 1.0 inch the eighth. A 3-year-old Lake Michigan fish (12.3 inches) is as long as a 5-year-old Lake Superior fish, and an 8-year-old Lake Michigan fish (18.9 inches) is 0.9 inch longer than the oldest (12 years) from Lake Superior. The smallest mature males and females were in the length intervals 12.0-12.4 inches and 13.0-13.4 inches, respectively. All males over 1.4 inches and all females over 14.9 inches were mature. The youngest mature males were in age-group II; 36 percent of II-group males but none of the females were mature. All fish older than age-group III were mature.

Transactions of the American Fisheries Society↗

USGS1995

ENSO events in the northern Gulf of Alaska, and effects on selected marine fisheries

The 1991-93 El Nino-Southern Oscillation (ENSO) event first appeared in the northern Gulf of Alaska in autumn 1991 with warm sea-surface temperatures. In winter 1992, there were pulses of increased sea level and anomalous circulation. El Nino conditions persisted at least through summer 1993. The effects of this ENSO event on major groundfish species and Pacific herring in the northern Gulf of Alaska were examined and compared with the effects of previous ENSO events. There is little evidence that the 1991-93 or 1982-83 ENSO events affected landings of walleye pollock, Pacific cod, Pacific halibut, or arrowtooth flounder. Some changes in distribution of groundfish species were observed in 1993, but the effect was similar to changes observed in non-ENSO warm years. In general, warm ocean conditions have a positive effect on recruitment of northern stocks, but ENSO events appear to have an inconsistent effect on year-class strength within species and among different species. For example, strong year classes of halibut and arrowtooth flounder sometimes, but not always, coincide with ENSO events; ENSO events are associated with moderate to weak year classes of cod and pollock. However, post-ENSO warm years often are associated with strong recruitment of many groundfish species. Major changes have occurred in the Gulf of Alaska ecosystem since 1977. The influence of the 1976 ENSO event in precipitating these changes and the role of the frequency or strength of subsequent El Nino events is presently unknown. Herring and other stocks of small pelagic fishes may be more affected by ENSO events. In particular, decreased catches, recruitment, and weight-at-age of herring are sometimes associated with ENSO events. Furthermore, a variety of seabirds which feed mostly on pelagic forage fishes or the pelagic juvenile stages of groundfish suffered widespread mortalities and breeding failures in the Gulf of Alaska during the ENSO years of 1983 and 1993. These effects on seabirds were also observed over a wider geographic range, from California to the western Bering Sea.

Report↗

USGS1938

The food of the lake trout (Cristivomer namaycush namaycush) and of the lawyer (Lota maculosa) of Lake Michigan

This paper reports on a qualitative and quantitative analysis of the contents of 4,979 lake trout stomachs (593 examined in 1930 and 1,253 collected in 1931 from southern Lake Michigan, 1,446 from northern Lake Michigan and 1,687 from Green Bay in 1932), and of a total of 1,528 lawyer stomachs (172 examined in 1930 and 734 collected in 1931 from southern Lake Michigan, 612 from northern Lake Michigan and 10 from Green Bay in 1932). The food of the trout consisted of 98 per cent by volume of fish of which Cottidae and Coregonidae were the principal constituents. Cottidae were dominant in southern Lake Michigan (72 per cent by volume), Coregonidae in northern Lake Michigan (51 per cent) but the lake shiner, Notropis atherinides, was most important in Green Bay in the spring of the year (64 per cent). The lawyer food consisted of 74 per cent by volume of fish and 26 per cent invertebrates. Dominant items were Cottidae (76 per cent by volume) in southern Lake Michigan, Coregonidae (51 per cent) and Pontoporeia (37 per cent) in northern Lake Michigan, and Percopsis (34 per cent) and Mysis (26 per cent) in Green Bay. Data are also presented on the frequency of occurrence (number of stomachs) of the food items and its variation with the sizes of the trout and lawyers, depths of water, seasons, and localities; on the number of individual fish of each species destroyed by the trout and lawyers; and on the calculated volume of the food fishes preceding digestion. The lake trout and lawyer are competitors for the same food, are both predators of the commercially important Coregonidae, and the lawyer through its consumption of invertebrates is a food competitor of the Coregonidae.

Transactions of the American Fisheries Society↗

USGS2000

Reduction in recruitment of white bass in Lake Erie after invasion of white perch

Recruitment to the adult population of white bass Morone chrysops in Lake Erie sharply declined during the early 1980s. To explain this phenomenon, we formulated the following four hypotheses: (1) the biological characteristics of adult spawners changed during the early 1980s, so that the ability to produce eggs decreased; (2) the decrease in phosphorus loadings to Lake Erie during the 1970s resulted in a lower abundance of crustacean zooplankton and thus in reduced survival of age-0 white bass; (3) the increase in the population of adult walleyes Stizostedion vitreum in Lake Erie during the 1970s and 1980s led to reduced survival of age-0 white bass; and (4) establishment of the white perch Morone americana population in Lake Erie during the early 1980s led to reduced survival of the early life stages of white bass. The growth, maturity, and fecundity of adults during the period 1981–1997 were compared with the same characteristics found by earlier studies. The mean length, weight, and condition factors that we calculated were higher than those reported for Lake Erie in 1927–1929 for all age groups examined, and white bass in Lake Erie matured at an earlier age during 1981–1997 than during 1927–1929. Fecundity estimates ranged from 128,897 to 1,049,207 eggs/female and were similar to estimates from other populations. Therefore, the first hypothesis was rejected. With respect to the second hypothesis, zooplankton surveys conducted during 1970 and 1983–1987 indicated that the abundance of crustacean zooplankton in Lake Erie did not change between the two time periods. However, these results were not conclusive because only a single-year survey was conducted before 1980. Based on walleye diet studies and estimates of walleye population size, walleye predation pressure on age-0 white bass in Lake Erie during 1986–1988 was just slightly higher than that during 1979–1981. Thus, such pressure can explain only a minor portion of the reduction in white bass recruitment. To test the fourth hypothesis, intervention analysis was applied to the long-term abundance series for white bass. The abundance of age-0 white bass in Lake Erie between 1982 and 1997 was significantly lower than that between 1969 and 1981. The catch per unit effort of adult white bass in commercial trap nets between 1987 and 1997 was significantly lower than it was before 1987. Moreover, the period of reduced recruitment for white bass in Oneida Lake, New York, which extends from 1955 to the present, coincides with occupation of the lake by white perch. Thus, of the four hypotheses entertained, the most plausible explanation for the reduction in white bass recruitment in Lake Erie is that white perch reduced the survival of white bass during its early life history.

Michigan, New York, Ohio, Ontario, Pennsylvania↗

USGS2024

Geomorphic map of the Umatilla River corridor, Oregon

This map portrays the distribution of landforms along the Umatilla River in northeastern Oregon and covers a corridor 127 kilometers long from the confluence of the Umatilla River with the Columbia River upstream to Meacham Creek. The map encompasses the valley bottom and extends about 1 kilometer up the adjoining hillslopes. Map data are intended to support water quality and fisheries enhancement efforts pursuant to the First Foods, a resource-management approach that focuses on traditionally gathered foods including water, fish, big game, roots, and berries and calls attention to the reciprocity between people and the foods upon which humans depend. The Umatilla River drains about 6,300 square kilometers on the northwest slope of the Blue Mountains in northeast Oregon. Most of the drainage basin is underlain by Miocene basalt flows of the Columbia River Basalt Group. Younger, weakly lithified, late Miocene and early Pliocene gravel deposits of local origin (for example, McKay Formation) are mapped in a few places. Upland surfaces are mantled with windborne silt (loess) correlative with deposits elsewhere known as the Palouse Formation. Surfaces below an elevation of about 340 meters were inundated repeatedly by large Pleistocene glacial outburst floods, most emanating from glacial Lake Missoula in western Montana. In backflooded areas such as the lower Umatilla River valley, Missoula floods deposited extensive slack-water silt. Areas mapped as open water, active channel and tie channel, flood basin, valley bottom, and modified land constitute the geomorphic floodplain: the area subject to occasional inundation by the Umatilla River. Deposits and landforms within the floodplain are inset into Missoula flood deposits and hence postdate the 20–15-kilo-annum Missoula floods. Some floodplain deposits are no more than a few centuries old, as indicated by substantial erosion and deposition during the Umatilla River flood of February 2020, the largest since systematic measurements began in October 1903. Deposits and landforms of the floodplain are transient features within the longer-term incision of the Umatilla River into mid-Miocene flood basalts and younger gravel of the McKay Formation.

Oregon↗

USGS2021

Angler-caught salmonid diets illustrate Lake Ontario Alewife population and predator-prey dynamics

Lake Ontario fisheries decision makers use information about the status and trajectory of prey fish populations, such as alewife, for salmonid sport fish management. In 2020, the April bottom trawl survey, typically used to assess alewife, was canceled the day after it began due to Coronavirus health concerns. This prompted NYSDEC and USGS science teams to initiate a diet study using angler-collected samples to provide information on the alewife population in 2020. Over 800 salmonid diets were collected from across Lake Ontario southern shore from May through September. Past diet studies illustrated alewife size distribution in piscivore diets overlapped April trawl survey-based distributions (proportion overlap = 0.51- 0.81, n = 5). In 2020 few age-1 sized alewife (40 - 140 mm) were observed in salmonid diets, suggesting that 2019 alewife reproduction was below average. Given that alewife reproductive success from 2017 and 2018 were also below average, the 2021 Lake Ontario adult alewife population will likely be at a record low for the 43-year time series. For all years and piscivore species, adult-sized Alewife ( total length > 140 mm) were the predominate size consumed by piscivores greater than 400 mm (~ 16 inches). Sizes of alewife in the diet were positively related to piscivore size. Diet composition, by dry weight, indicated alewife remain the dominant prey supporting salmonids and diets were generally similar to trawl-based estimates of prey fish community composition. The most notable deviation from this pattern included round goby, which comprised substantial portions of brown trout and lake trout diets in 2013 and 2020. These results inform decision making related to Lake Ontario salmonid stocking and predator prey dynamics and highlight the utility of angler-caught piscivore diets for indicating alewife population status.

Lake Ontario↗

USGS2012

Estimation of stream temperature in support of fish production modeling under future climates in the Klamath River Basin

Stream temperature estimates under future climatic conditions were needed in support of fish production modeling for evaluation of effects of dam removal in the Klamath River Basin. To allow for the persistence of the Klamath River salmon fishery, an upcoming Secretarial Determination in 2012 will review potential changes in water quality and stream temperature to assess alternative scenarios, including dam removal. Daily stream temperature models were developed by using a regression model approach with simulated net solar radiation, vapor density deficit calculated on the basis of air temperature, and mean daily air temperature. Models were calibrated for 6 streams in the Lower, and 18 streams in the Upper, Klamath Basin by using measured stream temperatures for 1999-2008. The standard error of the y-estimate for the estimation of stream temperature for the 24 streams ranged from 0.36 to 1.64°C, with an average error of 1.12°C for all streams. The regression models were then used with projected air temperatures to estimate future stream temperatures for 2010-99. Although the mean change from the baseline historical period of 1950-99 to the projected future period of 2070-99 is only 1.2°C, it ranges from 3.4°C for the Shasta River to no change for Fall Creek and Trout Creek. Variability is also evident in the future with a mean change in temperature for all streams from the baseline period to the projected period of 2070-99 of only 1°C, while the range in stream temperature change is from 0 to 2.1°C. The baseline period, 1950-99, to which the air temperature projections were corrected, established the starting point for the projected changes in air temperature. The average measured daily air temperature for the calibration period 1999-2008, however, was found to be as much as 2.3°C higher than baseline for some rivers, indicating that warming conditions have already occurred in many areas of the Klamath River Basin, and that the stream temperature projections for the 21st century could be underestimating the actual change.

Oregon;California↗

USGS2016

Effects of climate change on tidal marshes along a latitudinal gradient in California

Public Summary The coastal region of California supports a wealth of ecosystem services including habitat provision for wildlife and fisheries. Tidal marshes, mudflats, and shallow bays within coastal estuaries link marine, freshwater and terrestrial habitats, and provide economic and recreational benefits to local communities. Climate change effects such as sea-level rise (SLR) are altering these habitats, but we know little about how these areas will change over the next 50–100 years. Our study examined the projected effects of three recent SLR scenarios produced for the West Coast of North America on tidal marshes in California. We compiled physical and biological data, including coastal topography, tidal inundation, plant composition, and sediment accretion to project how SLR may alter these ecosystems in the future. The goal of our research was to provide results that support coastal management and conservation efforts across California. Under a low SLR scenario, all study sites remained vegetated tidal wetlands, with most sites showing little elevation and vegetation change relative to sea level. At most sites, mid SLR projections led to increases in low marsh habitat at the expense of middle and high marsh habitat. Marshes at Morro Bay and Tijuana River Estuary were the most vulnerable to mid SLR with many areas becoming intertidal mudflat. Under a high SLR scenario, most sites were projected to lose vegetated habitat, eventually converting to intertidal mudflats. Our results suggest that California marshes are vulnerable to major habitat shifts under mid or high rates of SLR, especially in the latter part of the century. Loss of vegetated tidal marshes in California due to SLR is expected to impact ecosystem services that are dependent on coastal wetlands such as wildlife habitat, carbon sequestration, improved water quality, and coastal protection from storms.

California↗

USGS2011

Status and trends of the rainbow trout population in the Lees Ferry reach of the Colorado River downstream from Glen Canyon Dam, Arizona, 1991–2009

The Lees Ferry reach of the Colorado River, a 25-kilometer segment of river located immediately downstream from Glen Canyon Dam, has contained a nonnative rainbow trout (Oncorhynchus mykiss) sport fishery since it was first stocked in 1964. The fishery has evolved over time in response to changes in dam operations and fish management. Long-term monitoring of the rainbow trout population downstream of Glen Canyon Dam is an essential component of the Glen Canyon Dam Adaptive Management Program. A standardized sampling design was implemented in 1991 and has changed several times in response to independent, external scientific-review recommendations and budget constraints. Population metrics (catch per unit effort, proportional stock density, and relative condition) were estimated from 1991 to 2009 by combining data collected at fixed sampling sites during this time period and at random sampling sites from 2002 to 2009. The validity of combining population metrics for data collected at fixed and random sites was confirmed by a one-way analysis of variance by fish-length class size. Analysis of the rainbow trout population metrics from 1991 to 2009 showed that the abundance of rainbow trout increased from 1991 to 1997, following implementation of a more steady flow regime, but declined from about 2000 to 2007. Abundance in 2008 and 2009 was high compared to previous years, which was likely the result of increased early survival caused by improved habitat conditions following the 2008 high-flow experiment at Glen Canyon Dam. Proportional stock density declined between 1991 and 2006, reflecting increased natural reproduction and large numbers of small fish in samples. Since 2001, the proportional stock density has been relatively stable. Relative condition varied with size class of rainbow trout but has been relatively stable since 1991 for fish smaller than 152 millimeters (mm), except for a substantial decrease in 2009. Relative condition was more variable for larger size classes, and substantial decreases were observed for the 152-304-mm size class in 2009 and 305-405-mm size class in 2008 that persisted into 2009.

Arizona↗

USGS1996

Reconnaissance investigation of water quality, bottom sediment, and biota associated with irrigation drainage in the Vermejo Project area and the Maxwell National Wildlife Refuge, Colfax County, northeastern New Mexico, 1993

Based on findings of limited studies during 1989-92, a reconnaissance investigation was conducted in 1993 to assess the effects of the Vermejo Irrigation Project on water quality in the area of the project, including the Maxwell National Wildlife Refuge. This project was part of a U.S. Department of the Interior National Irrigation Water-Quality Program to determine whether irrigation drainage has caused or has the potential to cause significant harmful effects on human health, fish, and wildlife and whether irrigation drainage may adversely affect the suitability of water for other beneficial uses. For this study, samples of water, sediment, and biota were collected from 16 sites in and around the Vermejo Irrigation Project prior to, during the latter part of, and after the 1993 irrigation season (April, August-September, and November, respectively). No inorganic constituents exceeded U.S. Environmental Protection Agency drinking-water standards. The State of New Mexico standard of 750 micrograms per liter for boron in irrigation water was exceeded at three sites (five samples), though none exceeded the livestock water standard of 5,000 micrograms per liter. Selenium concentrations exceeded the State of New Mexico chronic standard of 2 micrograms per liter for wildlife and fisheries water in at least eight samples from five sites. Bottom-sediment samples were collected and analyzed for trace elements and compared to concentrations of trace elements in soils of the Western United States. Concentrations of three trace elements at eight sites exceeded the upper values of the expected 95-percent ranges for Western U.S. soils. These included molybdenum at one site, selenium at seven sites, and uranium at four sites. Cadmium and copper concentrations exceeded the National Contaminant Biomonitoring Program 85th percentile in fish from six sites. Average concentrations of selenium in adult brine flies (33.7 μ g/g dry weight) were elevated above concentrations in other invertebrates. Concentrations of other elements were below their respective toxicity levels. Plants, invertebrates, fish, and fish fillets were collected and analyzed. These analyses were compared to diagnostic criteria and to each other to determine the extent of bioaccumulation of trace elements. Plants contained larger dry weight concentrations of aluminum, arsenic, boron, chromium, iron, lead, magnesium, manganese, nickel, and vanadium than invertebrates and fish. Adult brine flies, gathered from playas, contained larger geometric mean dry weight concentrations of boron, magnesium, and selenium than other invertebrates. Of all samples collected, the largest mercury concentrations were found in fish fillets, although these concentrations were below levels of concern. Mercury and selenium bioaccumulation was evident in various habitats of the study area. Biological samples from Natural playa, an endemic wetland, and Half playa, a playa that receives additional water through seepage and irrigation delivery canals, generally had elevated concentrations of boron, iron, magnesium, and selenium than samples from reservoir and river sites. Selenium concentrations were lowest in biota from the two reservoir sites, although a wetland immediately downstream from the dam impounding Lake No. 13 (created by seepage from the reservoir) had elevated concentrations of selenium in biota. The geometric mean selenium concentration of whole-fish samples, except those from Lakes No. 13 and No. 14, exceeded the 5- μ g/g dry weight selenium concentration that demarcates the approximate lower limit of the threshold range of concentrations that have freen associated with adverse effects on piscine reproduction. Biota collected on and in the area around Maxwell National Wildlife Refuge contained concentrations of selenium that are in the lower range of threshold values that have been associated (dietarily) with risks of avian reproductive abnormalities. Bottom-sediment samples from two sites downstream from the irrigation project were collected and analyzed for 23 organic compounds (principally organochlorine pesticide residues). Three compounds were detected at the two sites: DDD was found at 0.2 microgram per kilogram, DDE was detected at 0.1 microgram per kilogram at both sites, and chlordane was detected at 1 microgram per kilogram. None of the 28 whole-fish and fillet samples analyzed for PCB and organochlorine pesticide residues contained any of the 23 organic compounds tested for at concentrations higher than the analytical reporting limit (less than 0.01 μ g/g wet weight). Concentrations of inorganic analytes were generally within established guidelines or expected concentrations for water, sediment, and biota. lirigation-return flows were found to be unrelated to adverse effects in biota.

New Mexico↗

USGS2023

A proposed methodology for conducting threats assessments within the Great Lakes Coregonines restoration framework

This document serves to fulfill the Coregonine Threats Assessment Science Team’s charge of providing a written recommendation for a methodology to conduct threats assessments for Great Lakes coregonines within the Coregonine Restoration Framework (CRF). Through a series of team meetings that included presentations by experts on five candidate threats assessment frameworks followed by structured deliberations, we came to consensus to recommend the threats assessment framework used by Fisheries and Oceans Canada under Canada’s Species at Risk Act, with three modifications: (1) a conceptual modeling step, (2) the use of a “point spreading” approach to incorporate uncertainty when scoring threats, and (3) the use of a modified Delphi or “estimate-talk-estimate” approach when scoring key elements in the assessment. We recommend that this approach be applied to the spatial units delineated by the CRF Resolve Taxonomy and Gap Analysis science teams. In brief, the assessment process includes providing background information on the spatial unit and threats under assessment, constructing a conceptual model linking threats to key processes and vital rates, and scoring or ranking threats across six elements: likelihood of occurrence, level of impact, strength of evidence, unit-level threat occurrence, unit-level threat frequency, and unit-level threat extent. We provide detailed instructions for completing each step of the assessment and generating associated results, with particular attention paid to our suggested modifications. The Coregonine Threats Assessment Science Team also conducted two test runs to assess the applicability and effectiveness of our recommended framework for Great Lakes coregonine populations and their threats. We conducted these test runs on two examples of Great Lakes coregonines that represented two extremes of data availability, as well as two different management contexts. We chose Kiyi (Coregonus kiyi) in Lake Ontario as an example of a data-poor, extirpated population, and we chose Cisco (Coregonus artedi) in Lake Superior as an example of a data-rich, extant population. We provide the results of these test runs in Appendices 1-2. We also describe the lessons we learned from these test runs throughout this document and highlighted them in the “Recommendations for avoiding challenges during application” section.

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USGS2019

Comparison of continuous and interrupted lampricide block toxicity to sea lamprey and lake sturgeon

Lake Sturgeon ( Acipenser fulvescens , LST) is a state, provincial, and tribal species of special concern that is sensitive to lampricides used in sea lamprey control. As such, there is significant interest in the Great Lakes fisheries community to develop alternative sea lamprey ( Petromyzon marinus , SL) control approaches to minimize impacts on LST for applicable LST producing streams. Currently, lampricides are applied continuously to streams for 10 to 14 hours to achieve at least a 9-hour lampricide block at or above the SL minimum lethal concentration (MLC). Once the application of lampricides are initiated it usually takes 1-4 hours for the lampricide concentration to build to the target concentration during treatments depending on the flow dynamics of the stream. An interrupted lampricide block, wherein the treatment consists of two lampricide blocks (cumulative MLC of at least 9 hours) with a break in the middle, has been shown to decrease burrowing mayfly ( Hexagenia limbata ) mortality and resulted in no change to MLC when interruptions were up to 12 hours in duration. This study compared mortality of LST and SL during continuous and interrupted lampricide blocks with the goal of establishing whether an interrupted lampricide block treatment could be used to protect LST while maintaining treatment efficacy. Results show that there was no difference in toxicity to larval SL or LST between the interrupted block and continuous exposures. No differences were detected among calculated LC25s andLC50s for LST in the interrupted block tests compared to the continuous block tests during laboratory and streamside bioassays. An interrupted block field trial on Eliza Creek resulted in high mortality among caged larval SL (99.5%); however, posttreatment surveys estimated the treatment kill at 83.5% compared to >99% from the two previous continuous block treatments (2007, 2001). This suggests a substantial decrease in treatment effectiveness when using the interrupted block strategy. The lack of separation in toxicity between LST and SL under continuous interrupted block treatment and the reduced efficacy of the interrupted treatment block combine to make this treatment method a less desirable option.

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