USGS Science⌕ Search

SEARCH · USGS Science

Results for “Studies in Natural Sciences”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

934 records · Page 52Linked to original sources

Assessing the spawning movement and habitat needs of riverine Neosho Smallmouth Bass

Stream fishes are vulnerable to a variety of natural and anthropogenic stressors. Information on fish movements and habitat use is essential to conserve and manage populations, particularly at the edges of distributions and novel habitats. The Neosho Smallmouth Bass Micropterus dolomieu velox is endemic to the southwestern Ozark Highlands ecoregion, where the riverscape is highly dissected by impoundments. Our study objectives were to determine the pre-spawn, spawn, and post-spawn movements of adult, radio-tagged Neosho Smallmouth Bass, and identify the habitat factors at multiple spatial scales related to suitable spawning habitat. Movements by tagged fish in the Elk River of Oklahoma and Missouri and two Oklahoma tributaries draining to lower Elk River and Grand Lake O’ the Cherokee were greatest during the spring spawning period and were positively related to discharge and fish size; however, we observed considerable individual and stream-specific variability. Temperature and fish movement rate in the Elk River were positively related in all seasons except for winter, although temperature was less important for Smallmouth Bass movement in the smaller streams. Tagged fish were never detected using active or passive telemetry in the reservoir or reservoir-river interface except during periods of lotic character (i.e., the reservoir was not pooled above the Buffalo Creek-Elk River confluence). Nests were typically located at intermediate depths (mean = 0.8 m; SD = 0.3) and in low velocity habitats (0.0–0.2 m/s). Most of the nests examined comprised gravel substrates; however, 2.5% of the nests observed were located on full or partial bedrock substrate. We also documented nest clustering behavior by Neosho Smallmouth Bass (i.e., adjacent nests within 2 m of each other); 66 nest clusters were identified across 22 stream reaches. Cluster presence was more prevalent in warmer stream reaches with wide, shallow channels, and less likely in groundwater-gaining reaches, whereas overall nest abundance was greater in warmer streams and reaches with deeper pools. We showed the importance of both warmer streams and deep pools of small streams for Smallmouth Bass rearing (i.e., young-of-year abundance). We found negative relationships between floods and first-year juvenile survival and show the importance of stream network position (i.e., adjacency to larger streams) for mitigating the negative effects of July floods. Our analyses of both nesting and young-of-year habitat use suggest small streams, typically not considered important to many fisheries, are responsible for a proportion of Neosho Smallmouth Bass production. Further, consideration of management actions restricting take during the early spawning season may be warranted due to the unique nesting behavior (i.e., clustering) exhibited by this subspecies.

Arkansas, Missouri, Kansas, Oklahoma↗

Discussion and Review of “Seismology of the Oso-Steelhead landslide” by Hibert, Stark, and Ekstrom

In this study, Hibert et al. use the seismic waves generated by the disastrous 22 March 2014 landslide near Oso, Washington to investigate the dynamics of the event by combining long-period source inversions and short period analysis. Overall the paper is concise and well written and takes an innovative approach by integrating both high- and low-frequency seismic data together in the interpretation. It also demonstrates the useful prospect of resolving a trajectory of the center of mass of the landslide from a few traces of noisy seismic data. However, the main point of discussion that I would like to address stems from differences between the findings by Hibert et al. and the findings of a recently published multidisciplinary paper on the Oso landslide (Iverson et al., 2015). I am a co-author on the paper and performed the seismic analysis, which was similar to that of Hibert et al., yet the interpretation of how the event unfolded differs significantly between the two papers. In my opinion, this stems largely from a difference in information, some of which Hibert et al. unfortunately did not have access to prior to submission because it was just published in Iverson et al. (2015). However, differences also seem to stem from technical details of the methods and data used. Typically, such details are only of interest to seismologists, but in this case they make a substantial difference in understanding how the event unfolded and how it became so disastrous. For that reason, they are worthy of discussion here. The crux of the difference lies in two points 1) Iverson et al. (2015) found a multi-stage initiation of the main event, while Hibert et al. did not and 2) Iverson et al. (2015) found the second high-frequency event to be from a significantly smaller debris fall whereas Hibert et al. estimate it to be a substantial mass. I detail these two points below, then follow with an additional comment regarding the trajectory estimation made by Hibert et al. and some minor comments.

Natural Hazards and Earth System Sciences↗

Refining the earthquake history of south-central Alaska through lake records

The Alaska–Aleutian subduction zone (AASZ) is one of the world's most seismically active plate boundaries and the source of the 1964 M w 9.2 Great Alaska earthquake–the second largest instrumentally recorded earthquake in the world. Understanding the nature and frequency of such earthquakes is necessary for seismic and tsunami hazard assessment, but instrumental and historical records that span less than 150 years are too short to allow a statistically reliable analysis of earthquake recurrence times. This calls for studies of evidence of past earthquakes, extending the earthquake catalog further back in time. Subduction-zone paleoseismology in south-central Alaska is predominantly based on coastal evidence of land-level changes and tsunamis generated by megathrust earthquakes and preserved in the geological record. A complementary approach is lacustrine paleoseismology, which is still a relatively young discipline in Alaska. However, globally, lake basins are well-established high-resolution and continuous recorders of paleoseismic activity along subduction zones, relying on the identification of underwater landslide deposits and turbidites generated by seismic shaking. As a result, lake basins not only register ground shaking from megathrust earthquakes, but also from intraslab and crustal earthquakes, which are typically not accompanied by significant land-level changes. In this review paper, we combine coastal and lacustrine paleoseismology approaches to refine the south-central Alaskan earthquake history by comparing the paleoseismic records from two lakes (i.e., Eklutna Lake, located in the Chugach Mountain Range, and Skilak Lake, situated on the Kenai Peninsula) with the coastal and crustal earthquake catalog in Alaska. The resulting age ranges of all known megathrust earthquakes involving the Alaskan megathrust between the Kodiak and Prince William Sound (PWS) sections are more precise and accurate for the last 1.3 kyrs BP than the previously published age ranges from coastal records. As a result, this study supports the following key conclusions: (1) The 1964 CE earthquake was an exceptionally strong and unique event in the last 2000 years, rupturing the PWS, Kenai, Barren Islands, and Kodiak sections simultaneously. (2) The high-resolution and seasonal markings of the varved lake records now disentangle for the first time closely timed earthquakes, which was not possible based on the coastal evidence alone. (3) No persistent megathrust rupture boundaries exist. So, the possibility of a full rupture of the entire eastern AASZ, from PWS to Semidi cannot be excluded. (4) The rupture pattern in the eastern AASZ reveals superimposed cycles of multi-asperity ruptures (1964 earthquake) and clustered complementary partial ruptures, or rupture cascades. (5) The PWS section hosts the largest asperity in the eastern AASZ. (6) The shaking record of megathrust earthquakes indicates a time-dependent (quasiperiodic) behavior for the study area, but the observation of complementary clusters means that the hazards will not drop to zero but instead may even increase for a neighboring section. (7) The time-independent behavior of intraplate earthquakes implies that the intraslab hazard did not decrease following the 2016 and 2018 earthquakes. This study utilizes an integrated approach for subduction zone paleoseismology as a solution for unraveling recurrence and rupture patterns in Alaska, which can be applied worldwide.

Alaska↗

National Park Service Vegetation Mapping Inventory Program: Great Smoky Mountains National Park vegetation mapping project

The National Park Service (NPS) Vegetation Mapping Inventory (VMI) Program is an effort to classify, describe, and map existing vegetation communities in national park units throughout the United States. The NPS VMI Program is managed by the NPS Natural Resource Stewardship and Science Inventory and Monitoring Program and provides baseline vegetation information to natural resource managers, researchers, and ecologists. The U.S. Geological Survey Upper Midwest Environmental Sciences Center, NatureServe, and NPS Great Smoky Mountains National Park (GRSM, also referred to as the “Park”) have completed vegetation classification and mapping of GRSM, including the Foothills Parkway, for the NPS VMI Program. Mappers, ecologists, and botanists collaborated to affirm vegetation types of GRSM and to determine how best to map the vegetation types by using aerial imagery. A vegetation classification developed in 2003 by NatureServe and the NPS served as a foundation to further classify and map the vegetation types of the Park. Data from an additional 10 vegetation plots supported vegetation types either rare or not documented in the 2003 classification. Data from 203 verification sites were collected to test the field key to vegetation types and the application of vegetation types to a sample set of map polygons. Furthermore, data from 972 accuracy assessment (AA) sites were collected (of which 966 were used to test accuracy of the vegetation map layer). This GRSM vegetation mapping project identified 112 vegetation types consisting of 105 association types in the U.S. National Vegetation Classification (USNVC), 2 “park-special” types, 1 “map-special” type, and 4 cultural types in the USNVC. To map the vegetation and land cover of GRSM, 52 map classes were developed. Of these 52 map classes, 46 represent natural (including ruderal) vegetation types, most of which types are recognized in the USNVC. For the remaining 6 of the 52 map classes, 4 represent USNVC cultural types for agricultural and developed areas, and 2 represent non-USNVC types for nonvegetated open water and nonvegetated rock. Features were interpreted from viewing four-band digital aerial imagery using digital onscreen three-dimensional stereoscopic workflow systems in geographic information systems; digital aerial imagery was collected during September 23–October 30, 2015. The interpreted data were digitally and spatially referenced, thus making the spatial-database layers usable in a geographic information system. Polygon units were mapped to either a 0.5- or 0.25- hectare (ha) minimum mapping unit, depending on vegetation type. A geodatabase containing several feature-class layers and tables provides the locations and data of USNVC vegetation types (vegetation map layer), vegetation plots, verification sites, AA sites, project boundary extent, and aerial image centers and flight lines. Covering 210,875 ha, the feature-class layer and related tables for the vegetation map layer provide 34,084 polygons of detailed attribute data when special modifiers are not considered (average polygon size of 6.2 ha) and 36,589 polygons of detailed attribute data when special modifiers are considered (average polygon size of 5.8 ha). Each map polygon is assigned a map-class code and name and, when applicable, are linked to USNVC classification tables within the geodatabase. The vegetation map extent includes the administrative boundary for GRSM and the Foothills Parkway. A summary report, generated from the vegetation map layer, concludes that the 46 map classes representing natural (including ruderal) vegetation types apply to 99.2% of polygons (33,797 polygons; average size of 6.2 ha) and cover 98.6% of the Park (207,971.4 ha). Further broken down, map classes representing natural vegetation types indicate that the Park is 97.7% forest and woodland (205,882.5 ha), 0.6% shrubland (1,174.6 ha), and 0.4% herbaceous (914.3 ha). Map classes representing cultural vegetation types apply to 0.8% of polygons (259 polygons; average size of 4.9 ha) and cover 0.6% of the Park (1,277.4 ha). Map classes representing nonvegetation open and flowing water and unvegetated rock apply to 0.08% of polygons (28 polygons; average size of 58.1 ha) and cover 0.8% of the Park (1,625.9 ha). A thematic AA study was completed of map classes representing the natural (including ruderal) vegetation types of the Park. Initial AA results were discussed with NPS staff from the Park. Following input from NPS staff on how to handle map classes that fell below accuracy standards, adjustments were made to the vegetation map layer. Final results indicate an overall accuracy of 80.64% (kappa index of 79.96% for chance agreements) based on data from 966 of the 972 AA sites. Most individual map-class themes exceed the NPS VMI Program standard of 80% with a 90% confidence interval. The GRSM vegetation mapping project delivers many geospatial and vegetation data products, including an in-depth project report discussing methods and results, which includes map classification and map-class descriptions. This suite of products also includes descriptions and a field key to vegetation types; a database of vegetation plots, verification sites, and AA sites; digital images of field sites; field data sheets; digital aerial imagery; hardcopy and digital maps; a geodatabase of vegetation and land cover (map layer), field sites (vegetation plots, verification sites, and AA sites), aerial imagery index, project boundary, and metadata; and a contingency table listing AA results. Geospatial products are projected in the Universal Transverse Mercator, Zone 17 North, by using the North American Datum of 1983. Information on the NPS VMI Program and completed mapping projects are on the internet at https://www.nps.gov/im/vegetation-inventory.htm.

North Carolina, Tennessee↗

Landslide initiation thresholds in data-sparse regions: Application to landslide early warning criteria in Sitka, Alaska, USA

Probabilistic models to inform landslide early warning systems often rely on rainfall totals observed during past events with landslides. However, these models are generally developed for broad regions using large catalogs, with dozens, hundreds, or even thousands of landslide occurrences. This study evaluates strategies for training landslide forecasting models with a scanty record of landslide-triggering events, which is a typical limitation in remote, sparsely populated regions. We evaluate 136 statistical models trained on a precipitation dataset with five landslide-triggering precipitation events recorded near Sitka, Alaska, USA, as well as > 6000 d of non-triggering rainfall (2002–2020). We also conduct extensive statistical evaluation for three primary purposes: (1) to select the best-fitting models, (2) to evaluate performance of the preferred models, and (3) to select and evaluate warning thresholds. We use Akaike, Bayesian, and leave-one-out information criteria to compare the 136 models, which are trained on different cumulative precipitation variables at time intervals ranging from 1 h to 2 weeks, using both frequentist and Bayesian methods to estimate the daily probability and intensity of potential landslide occurrence (logistic regression and Poisson regression). We evaluate the best-fit models using leave-one-out validation as well as by testing a subset of the data. Despite this sparse landslide inventory, we find that probabilistic models can effectively distinguish days with landslides from days without slide activity. Our statistical analyses show that 3 h precipitation totals are the best predictor of elevated landslide hazard, and adding antecedent precipitation (days to weeks) did not improve model performance. This relatively short timescale of precipitation combined with the limited role of antecedent conditions likely reflects the rapid draining of porous colluvial soils on the very steep hillslopes around Sitka. Although frequentist and Bayesian inferences produce similar estimates of landslide hazard, they do have different implications for use and interpretation: frequentist models are familiar and easy to implement, but Bayesian models capture the rare-events problem more explicitly and allow for better understanding of parameter uncertainty given the available data. We use the resulting estimates of daily landslide probability to establish two decision boundaries that define three levels of warning. With these decision boundaries, the frequentist logistic regression model incorporates National Weather Service quantitative precipitation forecasts into a real-time landslide early warning “dashboard” system ( https://sitkalandslide.org/ , last access: 9 October 2023). This dashboard provides accessible and data-driven situational awareness for community members and emergency managers.

Alaska↗

Global distribution of beryllium isotopes in deep ocean water as derived from Fe-Mn crusts

The direct measurement of the ratio of cosmogenic 10 Be ( T 1 2 = 1.5 Ma "> T12= 1.5 Ma ) to stable terrigenously sourced 9 Be in deep seawater or marine deposits can be used to trace water mass movements and to quantify the incorporation of trace metals into the deep sea. In this study a SIMS-based technique has been used to determine the 10 Be 9 Be "> 10Be9Be ratios of the outermost millimetre of hydrogenetic ferromanganese crusts from the worlds oceans. 10 Be 9 Be "> 10Be9Be ratios, time-corrected for radioactive decay of cosmogenic 10 Be using 234 U 238 U "> 234U238U , are in good agreement with AMS measurements of modern deep seawater. Ratios are relatively low in the North and equatorial Atlantic samples (0.4–0.5 × 10 −7 ). In the Southwest Atlantic ratios increase up to 1 × 10 −7 , they vary between 0.7 and 1.0 × 10 −7 in Indian Ocean samples, and have a near constant value of 1.1 ± 0.2 × 10 −7 for all Pacific samples. If the residence time of 10 Be ( τ 10 Be ) in deep water is constant globally, then the observed variations in 10 Be 9 Be "> 10Be9Be ratios could be caused by accumulation of 10 Be in deep water as it flows and ages along the conveyor, following a transient depletion upon its formation in the Northern Atlantic. In this view both 10 Be and 9 Be reach local steady-state concentration in Pacific deep water and the global τ10 Be ≌ 600 a ">≌ τ10Be≌ 600a . An alternative possibility is that the Be isotope abundances are controlled by local scavenging. For this scenario τ 10 Be would vary according to local particle concentration and would ≌ 600 a in the central Pacific, but τ10 Be ≌ 230 a ">≌ τ10Be≌ 230a in the Atlantic. Mass balance considerations indicate that hydrothermal additions of 9 Be to the oceans are negligible and that the dissolved riverine source is also small. Furthermore, aeolian dust input of 9 Be appears insufficient to provide the dissolved 9 Be inventory. The dissolution of only a small proportion (2%) of river-derived particulates could in principle supply the observed seawater 9 Be content. If true, ocean margins would be the sites for 9 Be addition. Due to the particle-reactive nature of Be, these would also be the primary sites of Be removal. A possible net result of horizontal water masses passing through these marginal areas might be a decrease in seawater 10 Be 9 Be "> 10Be9Be , and establishment of a relatively constant 9 Be concentration. As τ 10 Be (∼ 600 a) is less than the apparent age of deep water in the Pacific (∼ 1500 a), the Pacific record of 10 Be 9 Be "> 10Be9Be is not expected to show secular variations due to changes in deep-water flow, despite the large variations in 10 Be 9 Be "> 10Be9Be between different water masses. Because of this insensitivity to deep-water flow, however, it is suggested that the 10 Be 9 Be "> 10Be9Be ratio, determined in the authigenic phase of marine sediments or hydrogenetic precipitates, should be a suitable tool for monitoring changes in continental input or cosmic ray intensity on longer time scales.

Earth and Planetary Science Letters↗

A genetic signature of the evolution of loss of flight in the Galapagos cormorant

INTRODUCTION Changes in the size and proportion of limbs and other structures have played a key role in the evolution of species. One common class of limb modification is recurrent wing reduction and loss of flight in birds. Indeed, Darwin used the occurrence of flightless birds as an argument in favor of his theory of natural selection. Loss of flight has evolved repeatedly and is found among 26 families of birds in 17 different orders. Despite the frequency of these modifications, we have a limited understanding of their underpinnings at the genetic and molecular levels. RATIONALE To better understand the evolution of changes in limb size, we studied a classic case of recent loss of flight in the Galapagos cormorant ( Phalacrocorax harrisi ). Cormorants are large water birds that live in coastal areas or near lakes, and P. harrisi is the only flightless cormorant among approximately 40 extant species. The entire population is distributed along the coastlines of Isabela and Fernandina islands in the Galapagos archipelago. P. harrisi has a pair of short wings, which are smaller than those of any other cormorant. The extreme reduction of the wings and pectoral skeleton observed in P. harrisi is an attractive model for studying the evolution of loss of flight because it occurred very recently; phylogenetic evidence suggests that P. harrisi diverged from its flighted relatives within the past 2 million years. We developed a comparative and predictive genomics approach that uses the genome sequences of P. harrisi and its flighted relatives to find candidate genetic variants that likely contributed to the evolution of loss of flight. RESULTS We sequenced and de novo assembled the whole genomes of P. harrisi and three closely related flighted cormorant species. We identified thousands of coding variants exclusive to P. harrisi and classified them according to their probability of altering protein function based on conservation. Variants most likely to alter protein function were significantly enriched in genes mutated in human skeletal ciliopathies, including Ofd1 , Evc , Wdr34 , and Ift122 . We carried out experiments in Caenorhabditis elegans to confirm that a missense variant present in the Galapagos cormorant IFT122 protein is sufficient to affect ciliary function. The primary cilium is essential for Hedgehog (Hh) signaling in vertebrates, and individuals affected by ciliopathies have small limbs and ribcages, mirroring the phenotype of P. harrisi . We also identified a 4–amino acid deletion in the regulatory domain of Cux1 , a highly conserved transcription factor that has been experimentally shown to regulate limb growth in chicken. The four missing amino acids are perfectly conserved in all birds and mammals sequenced to date. We tested the consequences of this deletion in a chondrogenic cell line and showed that it impairs the ability of CUX1 to transcriptionally up-regulate cilia-related genes (some of which contain function-altering variants in P. harrisi ) and to promote chondrogenic differentiation. Finally, we show that positive selection may have played a role in the fixation of the variants associated with loss of flight in P. harrisi . CONCLUSION Our results indicate that the combined effect of variants in genes necessary for the correct transcriptional regulation and function of the primary cilium likely contributed to the evolution of highly reduced wings and other skeletal adaptations associated with loss of flight in P. harrisi . Our approach may be generally useful for identification of variants underlying evolutionary novelty from genomes of closely related species.

Science↗

Fishway Entrance Palisade

This technical report summarizes the work that was conducted by the University of Massachusetts Amherst and the United States Geological Survey (USGS), along with other project partners, on the Fishway Entrance Palisade (EP), a projected funded through the Department of Energy’s (DOE) funding opportunity titled ‘Innovative Solutions for Fish Passage at Hydropower Dams’ (DE‐FOA‐0001662). The period of performance ranged from September 1, 2018 through September 30, 2021. The EP is a novel fish passage engineering technology designed to provide more favorable entry conditions for fish and to reduce costs relative to conventional fishway auxiliary water systems (AWS). The EP project has four primary components. First, the Northeast United States Auxiliary Water Systems Database was created (Northeast Fishway Auxiliary Water Systems Database Section). The database, developed with material provided by the U.S. Fish and Wildlife Service, contains information on fishway type (e.g., lift, Denil, pool and weir) and Auxiliary Water System (AWS) details (e.g., water conveyance method, diffuser type) for 60 hydroelectric sites in the region. Findings indicate that nearly 4 out of every 10 fishway in the region is a fish lift and approximately 1 out of every 4 is a Denil ladder. The remainder are a mix of vertical slot fishways, pool and weirs, and Ice Harbor fishways. Furthermore, over half of all AWS systems use floor diffusers to discharge the auxiliary (or attraction) water into the entrance of a fishway, whereas only 14% use wall diffusers. Second, limited experiments on a conventional AWS with live, actively migrating fish were conducted at the USGS Easter Ecological Science Center (EESC) S.O. Conte Research Laboratory (Conventional Auxiliary Water System Experiments Section). This study determined how water velocity through a wall diffuser, without turning vanes or timber baffles to distribute the flow, affects the behavior and passage of adult American shad, a conservative surrogate species for migratory fish on the East Coast. Two gross diffuser velocity treatments were examined, 0.5 ft/s and 1.0 ft/s. These wall diffuser velocities represented current (0.5 ft/s) and past (1.0 ft/s) design criteria guidelines set forth by the USFWS North Atlantic-Appalachian Region (Rojas 2020; USFWS 2019). Six trials with a total of 151 American Shad were conducted in June of 2019 for the two treatments. No differences in American shad passage efficiency were discovered between the two treatments, while approximately 3 in every 4 attempts were successful at passing the diffuser. While these results may appear to indicate that the generally accepted gross wall diffuser velocity criteria for American shad of 0.5 ft/s could be safely increased to 1.0 ft/s, further analysis is warranted. Furthermore, it is unknown how other migratory and resident fish species that traverse these structures would be impacted by such a change. Studying the wall diffuser hydraulics led to an important AWS observation. Without turning vanes or timber baffles in this study, doubling the diffuser area was insufficient at producing the type of flow field change one may expect by halving the gross diffuser velocity. Instead, the flow fields throughout each treatments study area were similar, which led to similar results in shad performance. This not only highlights the importance of installing flow guidance devices like turning vanes, but also to the importance of properly maintaining them, which can be costly. Third, more expansive experiments on the novel EP were conducted in the spring of 2019 and 2021 (Fishway Entrance Palisade Experiments). The goal of this study was to determine how adult American shad responded to a variety of conditions at a full-scale EP. A total of six treatments were examined by changing the average auxiliary channel velocity between 1.0 and 5.0 ft/s in intervals of 1.0 ft/s and by inserting/removing an entrance gate at the opening of the fishway. Thirty trials with a total of 1,273 shad were conducted over the two years. In all treatments, at least ~7 out of every 10 fish successfully passed the EP diffuser and swam into the entrance channel within the 3.5-hour long trial, highlighting the general effectiveness of the novel AWS technology. In both study years, lower velocities through the EP diffuser led to increased shad performance, though performance peaked for the 2 ft/s velocity treatment. This treatment condition represents an approximate six-fold increase in gross diffuser velocity relative to conventional auxiliary water systems, which in turn presents opportunities for cost savings (e.g., reduction in diffuser size). Shad performance, in general, was worse in 2019 than in 2021, potentially due to the different run timing when our trials were conducted (2019 trials occurred near the end of the migration season, unlike in 2021). Treatments in 2019 had approximately a 20% reduction in entrance efficiency by the trial end, including a 16.7% drop for the 3 ft/s velocity treatment in 2019 relative to 2021 (the only carryover treatment between years). Lastly, adding an entrance gate caused a significant delay to entry. The time to 25% entry raised ~20 minutes from the near instantaneous 25% entry that was reported for the other treatments conducted in the same year (2021). Though by the end of the 3.5-hour trial, the overall entrance efficiency nearly matched those of the other 2021 treatments. The fourth and final component of the EP project was an economic analysis that focused on the cost of attraction and environmental flows (Modeling Power Generation Losses Due to Environmental and Fish Passage Attraction Flows at a Run-Of-River Hydroelectric Operation in the Northeast). The study assessed the economic impact of meeting environmental flow requirements at a representative hydroelectric facility and fish lift in the Northeast. An initial finding of the study was that there is a paucity of published data on the costs of meeting attraction and environmental flows. This is due, in part, to the proprietary nature of this data. To explore the costs associated with these flows, three types of environmental flows were assessed: upstream fishway attraction flows, downstream fishway attraction flows, and habitat maintenance minimum flows. A physics-based model was developed and calibrated with three years of hourly generation and flow data as inputs. Gage flow inputs were adjusted and used to calculate power generated. To address hydrologic variability, the model was executed to simulate 30 years of historical flows. Results indicate that both interannual and seasonal climatic factors impact the costs of meeting environmental flow requirements. Generation potential is most strongly curtailed during dry years in terms of maximizing the capacity factor (the percent of time a plant generates at capacity). Dry years, and especially dry summers, have the most significant costs associated with mitigation flows. Of the three types of flows, habitat flows are most costly in terms of power production, followed by upstream attraction flows. Downstream attraction flows are least costly. This finding is the likely result of differences in both flow rates and duration of the seasonal requirement for each flow. Overall, environmental flows represented a 2-12% loss in annual generation, but losses during a dry summer can reach over 20%.

Final Technical Report↗

Water quality monitoring protocol for wadeable streams and rivers in the Northern Great Plains Network

Preserving the national parks unimpaired for the enjoyment of future generations is a fundamental purpose of the National Park Service (NPS). To address growing concerns regarding the overall physical, chemical, and biological elements and processes of park ecosystems, the NPS implemented science-based management through “Vital Signs” monitoring in 270 national parks (NPS 2007). The Northern Great Plains Network (NGPN) is among the 32 National Park Service Networks participating in this monitoring effort. The NGPN will develop protocols over the next several years to determine the overall health or condition of resources within 13 parks located in Nebraska, North Dakota, South Dakota, and Wyoming. The NGPN identified water resources as a Vital Sign to monitor because water quality and quantity are important aspects of ecological processes that operate across multiple temporal and spatial scales. In the semi-arid region of the Northern Great Plains, surface-water resources within the NGPN are ecologically important. The 13 parks within the NGPN are diverse and vary greatly in size, visitation, and water resources. For example, the measured surface area of the Badlands National Park is about 243,000 acres, which represents nearly one-half of the combined acreage of all 13 NGPN park units; however, water resources within the park are scarce and the majority of streams are intermittent. The Badlands National Park annually hosts nearly 860,000 visitors. Mount Rushmore National Memorial also has limited water resources but hosts nearly 3 million visitors per year within its 1,278 acres. The Missouri National Recreational River contains the greatest portion of waterbodies within the NGPN, consisting of 139 rivers and streams within an areal extent of about 69,000 acres. Although water resources and acreage of the NGPN parks are varied, unifying factors among the parks include the relatively low population density within the Great Plains area and the strong emphasis on agrarian land use throughout the region. To address the diverse water quality concerns, NGPN received input from park staff and conducted pilot studies in 2009 and 2010. These factors, in combination with the NGPN budget allocations, resulted in development of the NGPN’s water quality monitoring protocol. This protocol will provide a context to aid park resource managers in their day-to-day decisions and allow the assessment of the status (current conditions) and trends (directional changes across time) of streams/rivers within selected NGPN parks. Data collected from integrating water resource monitoring, in combination with the inventory of additional Vital Signs, can be used to assess resources and to aid in sound managerial decisions by the NGPN parks. As recommended by Oakley et al. (2003), this protocol provides a narrative and the rationale for selection of streams and rivers within the NGPN that will be measured for water quality, including dissolved oxygen, pH, specific conductivity, and temperature. Standard operating procedures (SOPs) that detail the steps to collect, manage, and disseminate the NGPN water quality data are in an accompanying document. The sampling design documented in this protocol may be updated as monitoring information is collected and interpreted, and as refinement of methodologies develop through time. In addition, evaluation of data and refinement of the program may necessitate potential changes of program objectives. Changes to the NGPN water quality protocols and SOPs will be carefully documented in a revision history log.

Colorado, Montana, Nebraska, North Dakota, South D↗

A comparison of synthetic flowpaths derived from light detection and ranging topobathymetric data and National Hydrography Dataset High Resolution Flowlines

Bathymetric and topobathymetric light detection and ranging (lidar) digital elevation models created for the Delaware River were provided to the National Geospatial Program and used to evaluate synthetic flowpath extraction from bathymetric/topobathymetric lidar survey data as a data source for improving the density, distribution, and connectivity of the National Hydrography Dataset High Resolution Flowline Network. As the surface-water component of The National Map, the National Hydrography Dataset maintains the Nation’s drainage network flow information and geometries for surface-water features used in hydrologic, hydraulic, and other science and engineering disciplines. The regional lidar survey for the Delaware River between Hancock, New York, and Trenton, New Jersey, was collected for the U.S. Geological Survey using the Experimental Advanced Airborne Research Lidar sensor system and processed by the Coastal National Elevation Database Applications Program. Using 1 percent of the maximum flow accumulation value for the surveyed Delaware River corridor as the flow accumulation threshold for grid cells at 1-, 5-, and 10-meter resolution created 223 to 283 kilometers of synthetic flowpaths potentially representing the river channel thalweg, which is the deepest point in a riverbed cross-section. There was potential for improving the High Resolution National Hydrography Dataset (HR NHD) Flowline network in places where the Delaware River channel, depicted as an Artificial Path in the HR NHD, is offset from the extracted synthetic river flowpath which sometimes appeared better positioned than the Artificial Path to represent the river thalweg. For the same area, using 0.05 percent of the maximum flow accumulation at the 1-, 5-, and 10-meter resolutions extracted 744 to 1,317 kilometers of synthetic flowpaths, with extracted synthetic flowpaths representing the main river channel and additional synthetic flowpaths representing tributaries or streams adjacent to the main channel. Overlaying these results with the HR NHDFlowline Network indicates that some of the additional synthetic flowpaths are connected to or extend HR NHD stream/river feature types. Some disconnected or isolated synthetic flowpaths not included in stream/river feature types were validated in orthoimagery and U.S. Topo Maps and provide examples of how extracted synthetic flowpaths could be used to delineate new stream/river features. Other additional extracted synthetic flowpaths depict linear features such as canals, tree lines, roads, or linear topographic depressions. For some river reaches where obstructions to flow or where low-relief topographic or bathymetric surfaces alter the flow direction, the software tool used to develop the flow direction grid did not calculate a primary flowpath for the river channel. Based on the results of this analysis, site conditions for the Delaware River corridor did not affect the quality of lidar bathymetric survey data. However, depending on the resolution of the lidar bathymetric digital elevation models (BDEMs), site conditions do have different effects on results for extracted synthetic flowpaths. We found that synthetic flowpaths extracted from 1-meter resolution lidar DEMs had more varied flow directions around in-channel landforms that obstructed flow than synthetic flowpaths extracted from 5- or 10-meter resolution lidar DEMs. As a result the 1-meter resolution DEM created some isolated or discontinuous synthetic flowpath segments where the 5- and 10-meter DEMs developed more continuous flowpaths. In this case the river bed upstream from the in-channel obstruction is shallower than the river bed downstream. Under these conditions the 1-meter resolution DEM provided synthetic flowpaths delineating a potential river thalweg. In this same area, the software solution modified (virtually raised) the river bed in the 5- and 10-meter resolution DEMs and flattened the bathymetric surface to create a continuous downstream flow direction, which caused trellis-patterned synthetic flowpaths to form. Under different site conditions and converse to the above development of synthetic flowpaths at different resolutions, at an abandoned river flood plain (terrace) with low relief that is adjacent to the river channel, the flow direction grid for the 1-meter resolution DEM developed continuous synthetic flowpath corresponding to a HR NHD Flowline network stream/river feature that connected to the main river channel but the larger resolution DEMs created isolated or disconnected synthetic flowpaths. A project to continue an evaluation of benefits of or issues caused by extracting synthetic flowpaths to enhance the HR NHD could include a study to assess the potential for merging surface-water flowpaths extracted from lidar topobathymetry and 3D Elevation Program digital elevation models. The merged DEM approach to synthetic flowpath extraction could extend the HR NHDFlowline network and enhance flow accumulations that might develop better flow direction grids in low-relief areas. Because of the confined lateral extent of the Delaware River, the lidar DEMs were not used to create catchments or watersheds; however, the merged DEM approach could also be tested as a resource for enhancing HR NHD catchments and watersheds. This lidar DEM synthetic flowpath extraction project supports the National Geospatial Program efforts to collect and produce high-quality lidar data to provide 3-dimensional representations of natural feature and aligns with the National Spatial Data Infrastructure to improve utilization of geospatial data. The results also can be useful for understanding strategies that can help maintain quality data in the HR NHD programs. KEYWORDS: bathymetric, digital elevation model, extracted synthetic flowpath, lidar, High Resolution National Hydrography Dataset, topobathymetric

New Jersey↗

Contaminants of emerging concern in the Great Lakes: Science to inform management practices for protecting the health and integrity of wildlife populations from adverse effects: GLRI action plan I, focus area 1, goal 5

Executive Summary: Under Action Plan I (2010-2014) of the Great Lakes Restoration Initiative (GLRI), Federal and Academic partners began an investigation of the presence and distribution of contaminants of emerging concern (CECs) in the Great Lakes and potential impacts on fish and wildlife. The term CECs is applied to a broad range of chemicals that are currently in use but for which we currently lack good understanding of whether fish, wildlife, or humans are being exposed and/or whether negative health or environmental effects are expected if exposure occurs. Pharmaceuticals, personal care products, flame retardants, many current use pesticides, and poly- and perfluorinated chemicals are some well-known groups of CECs, but there is no definitive or comprehensive list that can be used to support the management of CECs to reduce impacts on the Great Lakes ecosystem. Four overarching goals were identified for this collaborative investigation: 1. Evaluate the sources, occurrence, and distribution of CECs across the Great Lakes Basin. 2. Examine associations between the distribution of CECs and land-use patterns. 3. Review both scientific literature and field-generated data to determine the potential for CECs to cause adverse effects on Great Lakes fish and wildlife populations. 4. Develop efficient strategies to survey and/or monitor for threats that CECs may pose in order to take effective management actions before those threats evolve into large scale impacts on Great Lakes ecosystems or the services they provide. Achievement of these goals ensures progress towards Focus Area 1: Toxic Substances and Areas of Concern from GLRI Action Plan I, Goal 5: “ The health and integrity of wildlife populations and habitat are protected from adverse chemical and biological effects associated with the presence of toxic substances in the Great Lakes Basin ”. This large-scale research effort was comprised of individual and collaborative projects from multiple federal agencies and academic institutions, involving over 85 investigators, and overseen by the U.S. Environmental Protection Agency (EPA) Region 5, Great Lakes National Program Office. Partners include the United States Geological Survey, the National Oceanic and Atmospheric Administration, U.S. Fish and Wildlife Service, Saint Cloud State University, the U.S. EPA Office of Research and Development, and the U.S. Army Corps of Engineers. Key findings: 1. Contaminants of emerging concern were found throughout the monitored Great Lakes tributaries, but types and concentrations vary in association with regional land use. CECs were detected in nearly all samples collected. The type and concentration of the specific contaminants detected varied considerably among field sites and in association with land use type, such as urban, agricultural, wetland, 2 or forest. Contaminants were detected in the water column, sediment, and tissues of all species surveyed in the current work (mussels, aquatic insects, fish, and insect-eating birds). 2. There were over 20 contaminants for which CEC concentrations approached or exceeded those reported to cause toxicity in laboratory experiments. This was based on detection in water, sediments and or biota at one or more field sites. These contaminants represent compounds that warrant further investigation and monitoring with respect to potential impacts in certain areas of the Great Lakes basin. Based on the present investigation, compounds of greatest concern include: polycyclic aromatic hydrocarbons, associated with oil-based products and combustion of organic matter; atrazine, an herbicide; dichlorvos, an insecticide; and ibuprofen and venlafaxine, both pharmaceuticals. 3. Results suggest that mixtures of CECs presently found in most Great Lakes tributary locations surveyed may elicit subtle biological effects, but likely are not, alone, causing obvious detriment to current communities of fish and wildlife. CECs detected in the Great Lakes were associated with subtle biological effects like changes in gene expression, altered circulating glucose, etc. in both wild-caught and laboratory-reared organisms. These effects were generally not indicative of reproductive failure or mortality. However, the effects may have more serious implications when combined with other sources of stress like habitat degradation, changing climate conditions, and competition with invasive species. Due to limited historical data, it is unknown whether severe CEC-related impacts have already affected aquatic communities in waterbodies that have received long-term inputs of these contaminants. Likewise, under Action Plan I, biological effects were not necessarily evaluated at the sites where CEC concentrations exceeding laboratory toxicity thresholds were detected. As a result, strategic, ongoing surveillance and monitoring of CECs is warranted. This collaborative investigation resulted in new tools, approaches, and data that can be used to inform and support the management of CECs to reduce their impacts on Great Lakes natural resources. The following products of this research effort are available through https://communities.geoplatform.gov/glri/ or by contacting the investigators (see technical chapters found in Appendices A-F): 1. Database of CEC occurrence and concentrations in US tributary streams. The database includes CEC detections in water, sediment, and fish and wildlife tissues, and represents the most comprehensive survey of CECs in the Great Lakes Region. 2. Synopses of results and key findings. Integrated summaries of results, conclusions, and management implications of the CEC research are available through reports, topical fact sheets, and presentations. 3. Technical publications: This collaborative research effort has resulted in over 50 peer-reviewed publications, agency reports, and data releases that can be of use to resource managers, the scientific community, and members of the public. 4. Innovative tools. Innovative monitoring devices, sampling equipment, conceptual frameworks, and software applications were developed over the course of this 3 research. These tools are transferable to stakeholders via internet accessibility or via specifications, instructions, and demonstration detailed in technical publications. Hypotheses to guide CECs research under Action Plan II. Findings from 2010-2014 were used to guide further research in 2015-2018 for basin-wide surveillance of CECs and for sites warranting further study of potential biological impacts of CECs. Additional surveillance included both evaluation of additional classes of contaminants and expanded lists for chemical classes shown to be of greatest concern. Mixtures of some of the most frequently detected contaminants were also tested in laboratory studies to understand whether long term exposures to multiple contaminants may result in effects not evident from uncontrolled, short-term field experiments.

Great Lakes↗

Striped bass exploitation in tailwater habitats of east-central Oklahoma

Striped Bass (Morone saxatilis) is naturally anadromous, but a few land-locked populations have been documented that are self-sustaining, including fish in the Arkansas River, Oklahoma. This rare population is the source of brood stock for the Oklahoma Department of Wildlife Conservation hatcheries and is an important sportfish stock. Striped Bass often congregate in tailwater habitats, where anecdotal observations indicate anglers can harvest numerous fish daily. This suggests the need to evaluate the sustainability of harvest in these locations. It is unknown what portion of fish from the Arkansas River population use tailwater habitats or the timing and duration of use. The objectives of this study were to: 1) determine size structure , abundance, and total mortality rate of Striped Bass in the tailwaters of Tenkiller Lake and Lake Eufaula; 2) determine the extent and timing of immigration and emigration of Striped Bass in tailwater habitats to determine the potential for overharvest when they congregate in tailwater areas; 3) estimate delayed hooking mortality of Striped Bass in spring and summer; and 4) using the above data and modeling simulations, determine the potential for growth overfishing of Striped Bass in the tailwater reaches. We sampled 2,730 Striped Bass using boat electrofishing and tagged with passive integrated transponder (PIT) tags to estimate demographic data using a capture-recapture model. A subset of these Striped Bass was tagged with angler reward tags (internal anchor tags, n = 681) and dual technology acoustic-radio telemetry tags (n = 111) to estimate exploitation and track movements, respectively. Anglers returned 116 tags from 2020 to 2022; and our angler reporting rate was estimated to be 14.3%. Annual harvest mortality is minimally 7% (unadjusted for reporting rate) but could be as high as 42% (i.e., adjusting for compliance; but this exceeds the measured total mortality rate (34.3%) so true exploitation is probably 7–34.3%). Our abundance estimates for Striped Bass varied seasonally (ranging from 782 to 38,597 seasonally) and had a high level of uncertainty likely due to relatively low recapture rates. Additionally, our results indicated that Striped Bass exhibited a strong fidelity to their respective habitats within seasons, with fidelity probabilities ranging from 0.98 to 1.00. Movement among segments was common among seasons, indicating these localized populations mix with a larger population annually. Striped Bass were primarily in tailwater habitats during summer. Delayed hooking mortality data were collected in summer 2022. Due to habitat conditions that year, angling catch rates were low. Twenty-nine Striped Bass were tagged, and only eight Striped Bass remained tagged long enough to be tracked at least one day. The total time tracked for these eight fish was between one and three days. There were no confirmed mortalities, treatment, or control. Because of the low sample size, literature values for delayed hooking mortality were also used to supplement field data in the models. The yield-per-recruit model indicated exploitation at 30% or higher leads to recruitment overfishing. A 600 mm minimum TL regulation and 25–30% exploitation rate achieve maximum yield (954 kg/1,000 recruits). Maximum yield related to an average size at harvest of 718-mm TL; thus, growth overfishing occurs for any regulation where average size of harvest is smaller than 718 mm (which the model predicted would occur for any minimum length < 600, and for minimum length = 600 if exploitation was > 30%, it never occurred with minimum length requirements > 650). Increasing the minimum length regulation improves size structure, but a maximum length regulation had minimal effect unless it was implemented at a sufficiently small size (i.e., < 700 mm). Although catch-and-release mortality can be relatively high at times in the literature, according to our model, it appears to have a small effect on size structure, except when exploitation rates are > 50% and a restrictive maximum size regulation (< 800 mm) is used. The current population appears sustainable, especially considering the annual mixing dynamics and apparently large population (though we see a lot of uncertainty in the population estimates). However, modeling indicates that if enhancing size structure is an agency priority, then implementing more restrictive regulations could be advantageous.

Oklahoma↗

A simulation method for combining hydrodynamic data and acoustic tag tracks to predict the entrainment of juvenile salmonids onto the Yolo Bypass under future engineering scenarios

During water year 2016 the U.S. Geological Survey California Water Science Center (USGS) collaborated with the California Department of Water Resources (DWR) to conduct a joint hydrodynamic and fisheries study to acquire data that could be used to evaluate the effects of proposed modifications to the Fremont Weir on outmigrating juvenile Chinook salmon. During this study the USGS surgically implanted acoustic tags in juvenile late fall run Chinook salmon from the Coleman National Fish Hatchery, released the acoustically tagged juvenile salmon into the Sacramento River upstream of the Fremont Weir, and tracked their movements as they emigrated past the western end of the Fremont Weir. The USGS analyzed tracking data from the acoustically tagged juvenile salmon along with detailed hydrodynamic data collected in the Sacramento River during the winter/spring of water year 2016 in the vicinity of the western end of the Fremont Weir to assess the potential for enhancing the entrainment of Sacramento River Chinook salmon onto the Yolo Bypass under six different Fremont Weir modification scenarios. Each modification scenario consists of a notch or multiple notches in the Fremont Weir which are designed to divert a portion of the Sacramento River onto the Yolo Bypass when the Sacramento River is below the crest of the Fremont Weir. The primary goal of this entrainment analysis was to investigate how the location of the notch or notches in each scenario affected the entrainment of juvenile Chinook salmon onto the Yolo Bypass, and to predict the notch location or locations that would result in maximum entrainment under each modification scenario. Stumpner et al.’s (in review) analysis of hydraulic data collected during the 2016 study period showed that backwater effects in the Sacramento River created significant variability in the relationship between Sacramento River stage and the proportion of the Sacramento River flow that we expect to be diverted onto the Yolo Bypass under the modification scenarios. Because of this variability, accurately evaluating the entrainment potential of possible notch locations for each scenario required combining historic abundance data for juvenile Sacramento River Chinook salmon with historic hydraulic data for the Sacramento River in the vicinity of the Fremont Weir, so that the entrainment estimates would reflect the covariance between Sacramento River stage, Sacramento River discharge, and juvenile salmon abundance within the historic record. We used a Monte Carlo simulation framework to combine the high resolution hydrodynamic data and acoustic tag track data collected in 2016 with historic juvenile salmon abundance, Sacramento River stage, and Sacramento River discharge data from a period spanning water years 1996-2010 to assess the entrainment potential of different weir modification scenarios under historic conditions. The scenarios we simulated consisted of four single notch configurations, and two multiple notch configurations in the vicinity of the western end of the Fremont Weir. For each notch configuration the 15-water-year entrainment simulation was repeated for 63 possible notch locations in the vicinity of the western end of the Fremont Weir. This approach allowed us to assess the effect of notch location on the entrainment of juvenile salmonids onto the Yolo Bypass for each of the six notch configurations that we evaluated. The entrainment simulations showed that the location of each notch configuration had a major impact on the entrainment for each scenario; the predicted entrainment of some scenarios varied by as much as 400% based on where the notch (or notches) was (were) located in the study area. All of the single notch scenarios performed best when they were located within a 330 ft (100 meter) long section of the Sacramento River bank adjacent to the western terminus of the Fremont Weir (Table 1). Both of the multiple notch scenarios performed best when their upstream notches were located about 660 ft (200 meters) upstream of the western terminus of the Fremont Weir (Table 1). The results of the entrainment simulations indicated that for each notch configuration the same notch location produced near-maximum entrainment regardless of run abundance timing; this result suggests that there are areas within the study are where a notch (or notches) can be sited to achieve maximum entrainment for all runs (barring significant behavioral or physiological differences between runs). In addition, the simulation results indicate that for each notch configuration the same location is expected to produce nearmaximum entrainment for both wet water years and dry water years. Based on the results of the entrainment simulation we make three general recommendations for strategies to improve the entrainment potential of a notch in the Fremont Weir: 1) Comparisons between the maximum entrainment potential for each scenario suggested that total entrainment of winter run, spring run, and fall run salmon onto the Yolo Bypass can be increased by increasing the amount of water entering a notch when the Sacramento River stage is between 19 ft and 22 ft NAVD88; this could be accomplished by lowering notch invert elevations or by adding a control section to the Sacramento River to raise stage for a given discharge. 2) The relationship between Sacramento River stage and entrainment for each scenario indicated that entrainment efficiency for each scenario declined significantly once Sacramento River stage exceeded bankfull (approximately 28.5 ft NAVD88). This effect was likely due to inundation of the floodplain between the Sacramento River and the Fremont Weir; Stumpner et. al (In Review) have documented a reduction in the strength of the secondary circulation and centralization of the downwelling zone in the Sacramento River when this floodplain is inundated. Therefore, increasing the height of the river right bank of the Sacramento River to coincide with the height of the Fremont Weir is recommended to increase entrainment at higher stages. 3) Bathymetric features upstream of notch openings appeared to have a major impact on the entrainment potential of the simulated notches. For this reason we recommend taking care to avoid siting notches immediately downstream of bank features that alter the sidewall boundary layer, and we expect that smoothing the bank bathymetry upstream of a notch will enhance entrainment. Finally, we caution that the entrainment simulation was based on the behavior of large hatchery smolts, so it is likely that our results will be sensitive to any differences in behavior and physiology between these hatchery surrogates and naturally migrating juvenile salmon.

California↗

The geology of a part of Acadia and the nature of the Acadian orogeny across Central and Eastern Maine

The zone of Acadian collision between the Medial New England and Composite Avalon terranes is well preserved in Maine. A transect from northwest (Rome) to southeast (Camden) crosses the eastern part of Medial New England comprising the Central Maine basin, Liberty-Orrington thrust sheet, and Fredericton trough, and the western part of Composite Avalon, including the Graham Lake, Clarry Hill, and Clam Cove thrust sheets. U-Pb geochronology of events before, during, and after the Acadian orogeny helps elucidate the nature and distribution of tectonostratigraphic belts in this zone and the timing of some Acadian events in the Northern Appalachians. The Central Maine basin consists of sedimentary and volcanic rocks of Middle Ordovician (∼470 to ∼460 Ma) age overlain with probable conformity by latest Ordovician(?) through earliest Devonian marine rift and flysch sedimentary rocks; these are intruded by weakly to undeformed plutonic rocks of Early and Middle Devonian age (∼399–378 Ma). The Fredericton trough consists of Early Silurian gray pelite and sandstone to earliest Late Silurian calcareous turbidite, deformed and variably metamorphosed prior to the emplacement of Late Silurian (∼422 Ma) and Early to Late Devonian (∼418 to ∼368 Ma) plutons. The Liberty-Orrington thrust sheet consists of Cambrian(?)-Ordovician (>∼474 to ∼469 Ma and younger) clastic sedimentary and volcanic rocks intruded by highly deformed Late Silurian (∼424 to ∼422 Ma) and Devonian (∼418 to ∼389 Ma) plutons, possibly metamorphosed in Late Silurian time (prior to ∼417 Ma), and metamorphosed to amphibolite facies in Early to Middle Devonian time (∼400 to ∼381 Ma). The Graham Lake thrust sheet contains possible Precambrian rocks, Cambrian sedimentary rocks with a volcanic unit dated at ∼503 Ma, and Ordovician rocks with possible Caradocian Old World fossils, metamorphosed and deformed in Silurian time and intruded by mildly to undeformed Late Silurian (∼421 Ma) and Late Devonian (∼371 to ∼368 Ma) plutons. The Clarry Hill thrust sheet consists of poorly studied, highly metamorphosed Cambrian (?) rocks. The Clam Cove thrust sheet contains highly deformed Precambrian limestone, shale, sandstone, and conglomerate, metamorphosed to epidote amphibolite facies and intruded by a mildly deformed pluton dated at ∼421 Ma. Metamorphism, deformation, and voluminous intrusive igneous activity of Silurian age are common to both the most southeastern parts of Medial New England and the thrust sheets of Composite Avalon. In contrast to Medial New England, the thrust sheets of Composite Avalon show only modest effects of Devonian deformation and metamorphism. Regional stratigraphic relations, paleontologic findings, and U-Pb geochronology suggest that the Graham Lake, Clarry Hill, and Clam Cove thrust sheets are far-traveled allochthons that were widely separated from Medial New England in the Silurian. One hundred nine (109) new U-Pb analyses of zircon, monazite, and sphene from 25 samples of metamorphosed, stratified, and intrusive igneous rocks are used to decipher the history of events along the transect. In our view, many of the structures within Medial New England were formed during the closing of the back-arc ocean during the waning stages of the Taconian orogeny. These features include the precursors to the upright folds found in Silurian sedimentary rocks, the west-facing Liberty-Orrington thrust sheet, and the Silurian plutons of Medial New England. Acadian tectonic features, including flysch sedimentation, igneous activity, deformation with nappe emplacement, and metamorphism record the progressive loading of Medial New England by a stack of thrust nappes emplaced in latest Silurian to Middle Devonian time. The Acadian orogeny is a prolonged event, lasting from earliest Late Silurian to the Late Devonian, whose evolution involved: (1) convergence between Medial New England and Composite Avalon along an east-dipping subduction zone from earliest Late Silurian to Early Devonian time; (2) collision and concurrent delamination of lithospheric mantle beneath Medial New England in Early Devonian time resulting in deformation, high-grade metamorphism, and intrusive igneous activity in the most eastern part of Medial New England and the western parts of Composite Avalon; (3) Early to Middle Devonian northwest-migrating penetrative deformations of the Acadian Main stage, including northwest-directed thrusting and recumbent folding followed by tightening of folds possibly produced in the waning stages of the Taconian orogeny and forming folded wave trains of isoclinal folds (∼419 to ∼404 Ma), (4) asymmetrical folds produced by east-west shortening (∼399 to ∼380 Ma); and (5) final westward emplacement of Composite Avalon thrust sheets onto Medial New England in Late Devonian time (∼380 to ∼371 Ma). The present boundary between rocks of Medial New England and Composite Avalon at the surface is the Sennebec Pond fault, a high-angle fault that cuts the Graham Lake and Clarry Hill thrusts, and is intruded by the Mt. Waldo pluton (∼371), one of several Late Devonian plutons (∼371 to ∼367 Ma) that mark the end of the Acadian orogeny in coastal Maine. The thrust sheets of Composite Avalon carried rocks of peri-Gondwanan affinity and with possible Old World fauna many kilometers to the west over Medial New England, thus potentially hiding the original suture at depth under the Gulf of Maine.

Maine↗

The United States National Climate Assessment - Alaska Technical Regional Report

The Alaskan landscape is changing, both in terms of effects of human activities as a consequence of increased population, social and economic development and their effects on the local and broad landscape; and those effects that accompany naturally occurring hazards such as volcanic eruptions, earthquakes, and tsunamis. Some of the most prevalent changes, however, are those resulting from a changing climate, with both near term and potential upcoming effects expected to continue into the future. Alaska's average annual statewide temperatures have increased by nearly 4&deg;F from 1949 to 2005, with significant spatial variability due to the large latitudinal and longitudinal expanse of the State. Increases in mean annual temperature have been greatest in the interior region, and smallest in the State's southwest coastal regions. In general, however, trends point toward increases in both minimum temperatures, and in fewer extreme cold days. Trends in precipitation are somewhat similar to those in temperature, but with more variability. On the whole, Alaska saw a 10-percent increase in precipitation from 1949 to 2005, with the greatest increases recorded in winter. The National Climate Assessment has designated two well-established scenarios developed by the Intergovernmental Panel on Climate Change (Nakicenovic and others, 2001) as a minimum set that technical and author teams considered as context in preparing portions of this assessment. These two scenarios are referred to as the Special Report on Emissions Scenarios A2 and B1 scenarios, which assume either a continuation of recent trends in fossil fuel use (A2) or a vigorous global effort to reduce fossil fuel use (B1). Temperature increases from 4 to 22&deg;F are predicted (to 2070-2099) depending on which emissions scenario (A2 or B1) is used with the least warming in southeast Alaska and the greatest in the northwest. Concomitant with temperature changes, by the end of the 21st century the growing season is expected to lengthen by 15-25 days in some areas of Alaska, with much of that corresponding with earlier spring snow melt. Future projections of precipitation (30-80 years) over Alaska show an increase across the State, with the largest changes in the northwest and smallest in the southeast. Because of increasing temperatures and growing season length, however, increased precipitation may not correspond with increased water availability, due to temperature related increased evapotranspiration. The extent of snow cover in the Northern Hemisphere has decreased by about 10 percent since the late 1960s, with stronger trends noted since the late 1980s. Alaska has experienced similar trends, with a strong decrease in snow cover extent occurring in May. When averaged across the State, the disappearance of snow in the spring has occurred from 4 to 6 days earlier per decade, and snow return in fall has occurred approximately 2 days later per decade. This change appears to be driven by climate warming rather than a decrease in winter precipitation, with average winter temperatures also increasing by about 2.5&deg;F. The extent of sea ice has been declining, as has been widely published in both national and scientific media outlets, and is projected to continue to decline during this century. The observed decline in annual sea ice minimum extent (September) has occurred more rapidly than was predicted by climate models and has been accompanied by decreases in ice thickness and in the presence of multi-year ice. This decrease was first documented by satellite imagery in the late 1970s for the Bering and Chukchi Seas, and is projected to continue, with the potential for the disappearance of summer sea ice by mid- to late century. A new phenomenon that was not reported in previous assessments is ocean acidification. Uptake of carbon dioxide (CO2) by oceans has a significant effect on marine biogeochemistry by reducing seawater pH. Ocean acidification is of particular concern in Alaska, because cold sea water absorbs CO2 more rapidly than warm water, and a decrease in sea ice extent has allowed increased sea surface exposure and more uptake of CO2 into these northern waters. Ocean acidification will likely affect the ability of organisms to produce and maintain shell material, such as aragonite or calcite (calcium carbonate minerals structured from carbonate ions), required by many shelled organism, from mollusks to corals to microscopic organisms at the base of the food chain. Direct biological effects in Alaska further along the food chain have yet to be studied and may vary among organisms. Some of the potentially most significant changes to Alaska that could result from a changing climate are the effects on the terrestrial cryosphere - particularly glaciers and permafrost. Alaskan glaciers are changing at a rapid rate, the primary driver appearing to be temperature. Statewide, glaciers lost 13 cubic miles of ice annually from the 1950s to the 1990s, and that rate doubled in the 2000s. However, like temperature and precipitation, glacier ice loss is not spatially uniform; most glaciers are losing mass, yet some are growing (for example Hubbard Glacier in southeast Alaska). Alaska glaciers with the most rapid loss are those terminating in sea water or lakes. With this increasing rate of melt, the contribution of surplus fresh water entering into the oceans from Alaska's glaciers, as well as those in neighboring British Columbia, Canada, is approximately 20 percent of that contributed by the Greenland Ice Sheet. Permafrost degradation (that is, the thawing of ice-rich soils) is currently (2012) impacting infrastructure and surface-water availability in areas of both discontinuous and continuous ground ice. Over most of the State, the permafrost is warming, with increasing temperatures broadly consistent with increasing air temperatures. On the Arctic coastal plain of Alaska, permafrost temperatures showed some cooling in the 1950s and 1960s but have been followed by a roughly 5&deg;F increase since the 1980s. Many areas in the continuous permafrost zone have seen increases in temperature in the seasonally active layer and a decrease in re-freezing rates. Changes in the discontinuous permafrost zone are initially much more observable due to the resulting thermokarst terrain (land surface formed as ice rich permafrost thaws), most notable in boreal forested areas. Climate warming in Alaska has potentially broad implications for human health and food security, especially in rural areas, as well as increased risk for injury with changing winter ice conditions. Additionally, such warming poses the potential for increasing damage to existing water and sanitation facilities and challenges for development of new facilities, especially in areas underlain by permafrost. Non-infectious and infectious diseases also are becoming an increasing concern. For example, from 1999 to 2006 there was a statistically significant increase in medical claims for insectbite reactions in five of six regions of Alaska, with the largest percentage increase occurring in the most northern areas. The availability and quality of subsistence foods, normally considered to be very healthy, may change due to changing access, changing habitats, and spoilage of meat in food storage cellars. These and other trends and potential outcomes resulting from a changing climate are further described in this report. In addition, we describe new science leadership activities that have been initiated to address and provide guidance toward conducting research aimed at making available information for policy makers and land management agencies to better understand, address, and plan for changes to the local and regional environment. This report cites data in both metric and standard units due to the contributions by numerous authors and the direct reference of their data.

Alaska↗

Analysis and review of fishery-dependent data for Hawaiian nearshore noncommercial fisheries

Noncommercial, shore-based fisheries provide economic, social, and cultural services to communities throughout the Hawaiian Islands. The State of Hawai‘i Department of Land and Natural Resources (DLNR), Division of Aquatic Resources (DAR) routinely conducts surveys to monitor noncommercial fisheries such that estimates of fishing effort and catch by gear type can be generated and used to implement more sustainable management practices. DAR executes both the Hawai‘i Marine Recreational Fishery Survey (HMRFS), a nationally standardized survey that focuses on intercepting fishers at access points (i.e., boat ramps) across the main Hawaiian Islands, and a set of roving creel surveys on O‘ahu, Maui Nui, and Kaua‘i that observe and intercept fishers at locations along the shoreline outside of those targeted by HMRFS. The latter set of creel surveys were designed to complement HMRFS by expanding its geographic coverage and thus providing a more representative picture of noncommercial fishing in Hawai‘i. Sustainable management priorities set by DAR rely on the availability of statewide, fishery- dependent data. Thus, we collate information from island-based roving creel surveys into a cohesive Statewide Creel Survey Database. Further, we provide preliminary analyses and describe ways that surveys could be streamlined to improve future data collection, analysis, and utility. In so doing, we synthesize the most detailed information to-date about noncommercial shore-based fisheries of Hawai‘i. The unprecedented spatial and temporal coverage of DAR’s dataset reveals the value of their survey efforts over the last decade to address fishery management needs. Our primary objectives, results, and conclusions are summarized below: 1) Integrate DAR roving creel survey data from different islands into a single Statewide Creel Survey Dataset (Chapter II). We describe the collation of creel survey data from O‘ahu, Maui Nui, and Kaua‘i into a statewide dataset. We also offer ways in which these surveys could be streamlined to meet the needs of managers and decision makers. Briefly, these are to create a statewide strategic plan, standardize the execution of standard operating procedures, centralize the creel survey database and associated metadata, and consider using technology that improves the data pipeline, including transitioning from paper-based to electronic systems for data entry and processing. 2) Assess whether the new Statewide Creel Survey Dataset can provide inputs for length-based stock assessments (Chapter III). Only on Maui were interviews conducted with associated catch data. There was reasonably high taxonomic coverage (42 species from 186 interviews with 310 fishers), but low sample sizes for nearly all species precluded the development of length-based stock assessments. We provide summary statistics from the existing data and briefly discuss how technologies could be used to automate analysis of images of noncommercial catch. 3) Analyze the Statewide Creel Survey Dataset for spatial and temporal patterns in fishing effort (Chapter IV): a. Visualizing noncommercial fishing pressure . We found that fishing effort (mean number of fishers observed per survey event at a site) on O'ahu was over three times greater than that recorded during similar surveys conducted on Maui or Kaua'i. We create maps that display the distribution of angling and spearfishing effort around each of the three islands. b. Factors that predict fishing “hotspots” around Maui . Fishing effort on Maui was associated with areas with more wave power and less parking availability. There were half as many fishers in areas with parking lots than in areas with parking on the road shoulder only. c. Changes in fishing effort during the COVID-19 pandemic . There was no change in fishing effort on O‘ahu during the first year of the pandemic, but there was a 20% decline in year 2 and a 33% decline in year 3, both in comparison to pre-pandemic levels. Pre-pandemic creel survey data were unavailable for Maui and Kaua‘i, but fishing effort on these islands also declined as the pandemic progressed at similar or greater rates than those observed on O‘ahu. 4) Quantify potential bias in survey methods by experimentally deriving fisher detection probabilities of shore-based and drone-based surveys (Chapter V): a. Shore-based surveys . We conducted roving creel surveys for four months at three locations around Hilo Bay, designed to emulate and estimate the efficacy of DAR standard operating procedures. There was high agreement between paired observers in counting fishers, leading to near-perfect detection probabilities of both anglers (94%) and spearfishers (97%), but relatively low agreement and detection probabilities of other fishers (throw net, ‘opihi picking, etc.) (52%). b. Drone-based surveys . We used an unmanned aerial vehicle (UAV; operated by DAR staff) to collect imagery of fishers along the Hilo Bay shoreline. We used still images and video clips (with known fishing activity) to build an online survey that was distributed to DAR and HCFRU personnel, asking them to count and categorize resource users as a snorkeler, spearfisher, angler, or other fisher. Only 40.0% of the responses correctly counted and categorized resource users in the image. Anglers were correctly identified and enumerated in 90.0% of the responses, but the correct response rates of the other three user categories ranged from 67.8% – 79.4%. Snorkelers and anglers tended to be undercounted while spearfishers and other fishers were overcounted. 5) Review the potential for incorporating emerging technologies that will improve, augment, and evolve creel survey data collection, especially for spearfishing (Chapter VI). Within the context of monitoring shore-based noncommercial fishing, we review the use of electronic data entry/processing systems with geospatial and image capabilities, field cameras, drones, smart buoys, citizen science apps, data mining social media, artificial intelligence and machine learning. We highlight several of the challenges and considerations when implementing these technologies into creel surveys and provide a synthesis of options that could be used to better estimate spearfishing. The general conclusion of this assessment is that the DAR roving creel survey program is collecting valuable data that supplement the existing HMRFS efforts. However, there are a number of areas that could be improved to make these efforts a more effective tool for decision-making processes in resource management and conservation: 1) Establishment of clear statewide and island objectives for the Statewide Creel Survey Dataset. Currently, data collection efforts are focused towards addressing a very broad purpose – supplementing the HMRFS data collection efforts. However, the results of the preliminary analyses conducted as part of this project suggest that the data could be used to address other areas of need if these objectives were clearly defined. Further, the design of the creel survey would benefit from greater standardization of survey protocols between islands and an effort to define a) the acceptable margins of error associated with the estimates generated by these data and b) the minimum level of change that the surveys would need to detect to be useful to managers. 2) Centralization of data entry, data quality assessment, and data accessibility. Currently, each DAR office manages data entry, checks the data for errors, and is responsible for managing and storing the data. Instituting a centralized data entry system, particularly an online database that can receive survey data from tablets or smartphones running a standardized data collection application would improve efficiency, reduce data entry errors, and accelerate the availability of data to managers. A substantial amount of time and effort from the project described in this report was devoted to checking the dataset for errors. The development and application of data quality assurance protocols would ensure that the data are reliable and available in a timely fashion to support management decisions. 3) Address lingering questions regarding the efficacy of current survey protocols to capture and characterize the spearfishing component of the noncommercial fishery. The results presented in the report suggest that the current creel survey protocols do a good job detecting spearfishers when present but are not capturing sufficient data about their catch or total effort. There are also questions remaining as to whether the survey times and sites are sufficiently capturing the behavior of spearfishers in Hawai‘i. A more thorough assessment – whether through additional research, alteration of survey design, or review of data by representatives of the spearfishing community – would provide insight on how to use the Statewide Creel Survey Database to inform management of spearfishing. 4) Investigate the integration of technological advancements into the creel survey methods. As priorities and needs are developed and formalized, it would be valuable to consider how various technological advancements might enhance and streamline data collection or open new avenues of inquiry.

Hawaii↗