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At least 919 records · Page 51Linked to original sources
USGS2011

Construction of shipping channels in the Detroit River: History and environmental consequences

The Detroit River is one of the most biologically diverse areas in the Great Lakes basin. It has been an important international shipping route since the 1820s and is one of the busiest navigation centers in the United States. Historically, it supported one of the most profitable Lake Whitefish (Coregonus clupeaformis) commercial fisheries in the Great Lakes. Since 1874, the lower Detroit River has been systematically and extensively modified, by construction of deepwater channels, to facilitate commercial shipping. Large-scale dredging, disposal of dredge spoils, and construction of water-level compensating works has greatly altered channel morphology and flow dynamics of the river, disrupting ecological function and fishery productivity of the river and influencing Great Lakes water levels. From 1874 to 1968, major construction projects created 96.5 kilometers (60 miles) of shipping channels, removed over 46,200,000 m 3 of material, covered 4,050 hectares (40.5 square kilometers) of river bottom with dredge spoils, and built 85 hectares of above-waterline compensating works at a total cost of US$283 million. Interest by industries and government agencies to develop the river further for shipping is high and increasing. Historically, as environmental protection agencies were created, construction impacts on natural resources were increasingly addressed during the planning process and, in some cases, assessments of these impacts greatly altered or halted proposed construction projects. Careful planning of future shipping-channel construction and maintenance projects, including a thorough analysis of the expected environmental impacts, could greatly reduce financial costs and ecological damages as compared to past shipping-channel construction projects.

Michigan↗
USGS2012

Lateral and vertical channel movement and potential for bed-material movement on the Madison River downstream from Earthquake Lake, Montana

The 1959 Hebgen Lake earthquake caused a massive landslide (Madison Slide) that dammed the Madison River and formed Earthquake Lake. The U.S. Army Corps of Engineers excavated a spillway through the Madison Slide to permit outflow from Earthquake Lake. In June 1970, high streamflows on the Madison River severely eroded the spillway channel and damaged the roadway embankment along U.S. Highway 287 downstream from the Madison Slide. Investigations undertaken following the 1970 flood events concluded that substantial erosion through and downstream from the spillway could be expected for streamflows greater than 3,500 cubic feet per second (ft 3 /s). Accordingly, the owners of Hebgen Dam, upstream from Earthquake Lake, have tried to manage releases from Hebgen Lake to prevent streamflows from exceeding 3,500 ft 3 /s measured at the U.S. Geological Survey (USGS) gaging station 0638800 Madison River at Kirby Ranch, near Cameron, Montana. Management of flow releases from Hebgen Lake to avoid exceeding the threshold streamflow at USGS gaging station 06038800 is difficult, and has been questioned for two reasons. First, no road damage was reported downstream from the Earthquake Lake outlet in 1993, 1996, and 1997 when streamflows exceeded the 3,500-ft 3 /s threshold. Second, the 3,500-ft 3 /s threshold generally precludes releases of higher flows that could be beneficial to the blue-ribbon trout fishery downstream in the Madison River. In response to concerns about minimizing streamflow downstream from Earthquake Lake and the possible armoring of the spillway, the USGS, in cooperation with the Madison River Fisheries Technical Advisory Committee (MADTAC; Bureau of Land Management; Montana Department of Environmental Quality; Montana Fish, Wildlife and Parks; PPL-Montana; U.S. Department of Agriculture Forest Service - Gallatin National Forest; and U.S. Fish and Wildlife Service), conducted a study to determine movement of the Madison River channel downstream from Earthquake Lake and to investigate the potential for bed material movement along the same reach. The purpose of this report is to present information about the lateral and vertical movement of the Madison River from 1970 to 2006 for a 1-mile reach downstream from Earthquake Lake and for Raynolds Pass Bridge, and to provide an analysis of the potential for bed-material movement so that MADTAC can evaluate the applicability of the previously determined threshold streamflow for initiation of damaging erosion. As part of this study channel cross sections originally surveyed by the USGS in 1971 were resurveyed in 2006. Incremental channel-movement distances were determined by comparing the stream centerlines from 14 aerial photographs taken between 1970 and 2006. Depths of channel incision and aggregation were determined by comparing the 2006 and 1971 cross-section and water-surface data. Particle sizes of bed and bank materials were measured in 2006 and 2008 using the pebble-count method and sieve analyses. A one-dimensional hydraulic-flow model (HEC-RAS) was used to calculate mean boundary-shear stresses for various streamflows; these calculated boundary-shear stresses were compared to calculated critical-shear stresses for the bed materials to determine the potential for bed-material movement. A comparison of lateral channel movement distances with annual peak streamflows shows that streamflows higher than the 3,500-ft 3 /s threshold were followed by lateral channel movement except from 1991 to 1992 and possibly from 1996 to 1997. However, it was not possible to discern whether the channel moved gradually or suddenly, or in response to one peak flow, to several peak flows, or to sustained flows. The channel moved between 2002 and 2005 even when streamflows were less than the threshold streamflow of 3,500 ft 3 /s. Comparisons of cross sections and aerial photographs show that the channel has moved laterally and incised and aggraded to varying degrees. The channel has developed meander bends and has incised as much as 5–12 feet (ft) through the upstream part of the Madison Slide (cross sections 1400–800). Near cross section 800, the stream has eroded into the steep right bank between the stream and the road where fill was mechanically placed after 1970. Channel movement also was noted downstream from the Madison Slide. Near Raynolds Pass Bridge, about 3 miles (mi) downstream from Earthquake Lake, elevations across the channel have changed by -1.4 ft to +1.9 ft, but these changes were local in nature and could represent a few rocks or depressions in the bed. Overall, it does not appear that the materials eroded from the Madison Slide are causing aggradation in the subreach near the Raynolds Pass Bridge. Comparisons of critical shear stresses to mean boundary-shear stresses indicate that the D50 particle sizes (median size) along the right side of the bed between cross sections 400 and 500 and along the right side of the bed between cross sections 1300 and 1400 could move at the threshold streamflow. In contrast, most of the D84 particle sizes at those two locations probably will not move at the threshold streamflow. This lack of movement for the larger particles at the threshold streamflow could lead to further armoring of the bed as the D50 and smaller-sized particles are removed from the bed and transported downstream. The Shields parameter values from 0.04 to 0.08 that were used to calculate critical shear stresses could be conservative for a high-gradient stream such as the Madison. A higher, less conservative, Shields parameter would result in higher critical shear stresses, meaning that higher streamflows would be required to move material than those reported herein. In addition, because materials in the channel thalweg are exposed to higher boundary-shear stresses than the materials along the sides of the channel, larger, more erosion-resistant materials likely exist in the deeper parts of the channel where high-flow depths and velocities prevented sediment sampling. Movement of these materials might require higher critical shear stresses than estimated in this report. Characterization of sediment sizes in the center of the stream and observation of bed-material movement for a range of streamflows could provide information to help refine the Shields parameter and critical-shear stress estimates for bed materials in the Madison River downstream from Earthquake Lake. Furthermore, resurveying cross sections and water-surface elevations more frequently (either annually or after high streamflows) could better define the relation between streamflow and lateral and vertical channel movement.

Montana↗
USGS2017

Water quality and quantity and simulated surface-water and groundwater flow in the Laurel Hill Creek Basin, southwestern Pennsylvania, 1991–2007

Laurel Hill Creek is considered one of the most pristine waterways in southwestern Pennsylvania and has high recreational value as a high-quality cold-water fishery; however, the upper parts of the basin have documented water-quality impairments. Groundwater and surface water are withdrawn for public water supply and the basin has been identified as a Critical Water Planning Area (CWPA) under the State Water Plan. The U.S. Geological Survey, in cooperation with the Somerset County Conservation District, collected data and developed modeling tools to support the assessment of water-quality and water-quantity issues for a basin designated as a CWPA. Streams, springs, and groundwater wells were sampled for water quality in 2007. Streamflows were measured concurrent with water-quality sampling at main-stem sites on Laurel Hill Creek and tributaries in 2007. Stream temperatures were monitored continuously at five main-stem sites from 2007 to 2010. Water usage in the basin was summarized for 2003 and 2009 and a Water-Analysis Screening Tool (WAST) developed for the Pennsylvania State Water Plan was implemented to determine whether the water use in the basin exceeded the “safe yield” or “ the amount of water that can be withdrawn from a water resource over a period of time without impairing the long-term utility of a water resource .” A groundwater and surface-water flow (GSFLOW) model was developed for Laurel Hill Creek and calibrated to the measured daily streamflow from 1991 to 2007 for the streamflow-gaging station near the outlet of the basin at Ursina, Pa. The CWPA designation requires an assessment of current and future water use. The calibrated GSFLOW model can be used to assess the hydrologic effects of future changes in water use and land use in the basin. Analyses of samples collected for surface-water quality during base-flow conditions indicate that the highest nutrient concentrations in the main stem of Laurel Hill Creek were at sites in the northeastern part of the basin where agricultural activity is prominent. All of the total nitrogen (N) and a majority of the total phosphorus (P) concentrations in the main stem exceeded regional nutrient criteria levels of 0.31 and 0.01 milligrams per liter (mg/L), respectively. The highest total N and total P concentrations in the main stem were 1.42 and 0.06 mg/L, respectively. Tributary sites with the highest nutrient concentrations are in subbasins where treated wastewater is discharged, such as Kooser Run and Lost Creek. The highest total N and total P concentrations in subbasins were 3.45 and 0.11 mg/L, respectively. Dissolved chloride and sodium concentrations were highest in the upper part of the basin downstream from Interstate 76 because of road deicing salts. The mean base-flow concentrations of dissolved chloride and sodium were 117 and 77 mg/L, respectively, in samples from the main stem just below Interstate 76, and the mean concentrations in Clear Run were 210 and 118 mg/L, compared to concentrations less than 15 mg/L in tributaries that were not affected by highway runoff. Water quality in forested tributary subbasins underlain by the Allegheny and Pottsville Formations was influenced by acidic precipitation and, to a lesser extent, the underlying geology as indicated by pH values less than 5.0 and corresponding specific conductance ranging from 26 to 288 microsiemens per centimeter at 25 degrees Celsius for some samples; in contrast, pH values for main stem sites ranged from 6.6 to 8.5. Manganese (Mn) was the only dissolved constituent in the surface-water samples that exceeded the secondary maximum contaminant level (SMCL). More than one-half the samples from the main stem had Mn concentrations exceeding the SMCL level of 50 micrograms per liter (μg/L), whereas only 19 percent of samples from tributaries exceeded the SMCL for Mn. Stream temperatures along the main stem of Laurel Hill Creek became higher moving downstream. During the summer months of June through August, the daily mean temperatures at the five sites exceeded the limit of 18.9 degrees Celsius (°C) for a cold-water fishery. The maximum instantaneous values for each site ranged from 27.2 to 32.8 °C. Water-quality samples collected at groundwater sites (wells and springs) indicate that wells developed within the Mauch Chunk Formation had the best water quality, whereas wells developed within the Allegheny and Pottsville Formations yielded the poorest water quality. Waters from the Mauch Chunk Formation had the highest median pH (7.6) and alkalinity (80 mg/L calcium carbonate) values. The lowest pH and alkalinity median values were in waters from the Allegheny and Pottsville Formations. Groundwater samples collected from wells in the Allegheny and Pottsville Formations also had the highest concentrations of dissolved iron (Fe) and dissolved Mn. Seventy-eight percent of the groundwater samples collected from the Allegheny Formation exceeded the SMCL of 300 μg/L for Fe and 50 μg/L for Mn. Forty-three and 62 percent of the groundwater samples collected from the Pottsville Formation exceeded the SMCL for iron and Mn, respectively. The highest Fe and Mn concentrations for surface waters were measured for tributaries draining the Pottsville Formation. The highest median Fe concentration for tributaries was in samples from streams draining the Allegheny Formation. During base-flow conditions, the streamflow per unit area along the main stem of Laurel Hill Creek was lowest in the upper parts of the basin [farthest upstream site 0.07 cubic foot per second per square mile (ft 3 /s/mi 2 )] and highest (two sites averaging about 0.20 (ft 3 /s/mi 2 ) immediately downstream from Laurel Hill Lake in the center of the basin. Tributaries with the highest streamflow per unit area were those subbasins that drain the western ridge of the Laurel Hill Creek Basin. The mean streamflow per unit area for tributaries draining areas that extend into the western ridge and draining eastern or central sections was 0.24 and 0.05 ft 3 /s/mi 2 , respectively. In general, as the drainage area increased for tributary basins, the streamflow per unit area increased. Criteria established by the Pennsylvania Department of Environmental Protection indicate that the safe yield of water withdrawals from the Laurel Hill Creek Basin is 1.43 million gallons per day (Mgal/d). Water-use data for 2009 indicate that net (water withdrawals subtracted by water discharges) water withdrawals from groundwater and surface-water sources in the basin were approximately 1.93 Mgal/d. Water withdrawals were concentrated in the upper part of the basin with approximately 80 percent of the withdrawals occurring in the upper 36 mi 2 of the basin. Three subbasins—Allen Creek, Kooser Run, and Shafer Run— in the upper part were affected the most by water withdrawals such that safe yields were exceeded by more than 1,000 percent in the first two and more than 500 percent in the other. In the subbasin of Shafer Run, intermittent streamflow characterizes sections that historically have been perennial. The GSFLOW model of the Laurel Hill Creek Basin is a simple one-layer representation of the groundwater flow system. The GSFLOW model was primarily calibrated to reduce the error term associated with base-flow periods. The total amount of observed streamflow at the Laurel Hill Creek at Ursina, Pa. streamflow-gaging station and the simulated streamflow were within 0.1 percent over the entire modeled period; however, annual differences between simulated and observed streamflow showed a range of -27 to 24 percent from 1992 to 2007 with nine of the years having less than a 10-percent difference. The primary source of simulated streamflow in the GSFLOW model was the subsurface (interflow; 62 percent), followed by groundwater (25 percent) and surface runoff (13 percent). Most of the simulated subsurface flow that reached the stream was in the form of slow flow as opposed to preferential (fast) interflow.

Pennsylvania↗
USGS2020

Stormwater quality of infrastructure elements in Rapid City, South Dakota, 2016–18

As runoff flows over the land or impervious surfaces (paved streets, parking lots, and building roofs), it accumulates debris, chemicals, sediment, and other contaminants that can adversely affect water quality if the runoff discharge remains untreated. Pathogens, commonly measured using fecal indicator bacteria such as Escherichia coli , enterococci, or fecal coliform, are the most-frequent cause of water-quality impairment in rivers and streams in the United States. Rapid Creek originates in the western Black Hills area and flows east through Rapid City, South Dakota, to its mouth at the Cheyenne River. The water quality of Rapid Creek is important because the reach that flows through Rapid City is a valuable spawning area for a self-sustaining trout fishery, is actively used for recreation, and is a seasonal municipal water supply for the City of Rapid City. These uses (fishery, recreation, and water supply) are considered beneficial uses by the South Dakota Department of Environment and Natural Resources. Numerical criteria have been established for total suspended solids and Escherichia coli concentrations, among other water-quality constituents, for these beneficial uses. The objectives of this study were to improve the method by which fecal indicator bacteria and total suspended solids are quantified in the urban drainages within Rapid City and to provide information that helps identify origins of fecal indicator bacteria and total suspended solids. This information can be used in hydrologic models to estimate fecal indicator bacteria and total suspended solid loading from certain infrastructure elements in urban environments. Stormwater samples analyzed for Escherichia coli , total suspended solids, specific conductance, and pH were collected in three drainage basin flowpaths within Rapid City: Jackson, Wildwood, and the Eco Prayer Park. Data-collection activities for this study focused on upgradient urban flowpath elements during rainfall events. This approach builds upon previous stormwater assessments that characterized the water quality in urban basin outlets near the downstream end of the stormwater flowpaths. Within each flowpath group, 4–6 sites were selected to represent the various infrastructure elements of the runoff process. These elements included roof downspouts, parking lots, street curbs and gutters, open channels, underground storm sewers, and stormwater ponds or best-management practice facilities. In general, the concentrations of Escherichia coli and total suspended solids increased in the downstream direction for all flowpath sites. The wash-off process after the first flush is evident for total suspended solids and specific conductance; however, Escherichia coli concentrations did not necessarily follow the same pattern. Escherichia coli concentrations in the latter part of the runoff period were similar to or greater than the initial concentrations of the first set of samples. Stormwater-quality data were summarized by infrastructure type (roof downspout, parking lot, street curb, and channel/storm sewer) to provide information about approximate water-quality concentrations originating at the upper end of urban flowpaths. Escherichia coli and total suspended solid concentrations were lowest in samples collected from locations most isolated from human influence (roof downspouts); the median concentrations at these sites were 4 most probable number per 100 milliliters and 15 milligrams per liter, respectively. The delivery potential of fecal indicator bacteria and sediment from parking lots and street curbs was similar; median concentrations of Escherichia coli and total suspended solids were around 150–220 most probable number per 100 milliliters and 56–86 milligrams per liter, respectively. The downstream receiving channels and storm sewers where stormwater was aggregated typically contained the highest Escherichia coli concentrations (median was 1,800 most probable number per 100 milliliters), but the total suspended solid concentrations were similar to upstream elements in the flowpath (median was 69 milligrams per liter). The data collected from this study demonstrate that stormwater is contaminated with fecal indicator bacteria upon initial contact with impervious surfaces and highlight the importance of controlling the volume of stormwater discharges into receiving waterbodies via storage structures and pervious elements. Diluting stormwater with high concentrations of Escherichia coli with the receiving water’s (Rapid Creek) lower concentration of Escherichia coli is likely the primary mechanism for meeting the beneficial-use criterion threshold of 235 most probable number per 100 milliliters. Although total suspended solid concentrations in the upper parts of the basin (parking lots and street curbs) also begin at concentrations (56 to 86 milligrams per liter) above the beneficial-use criterion for Rapid Creek (53 milligrams per liter), current stormwater-control practices (storage ponds, swales, and wetlands) may be able to reduce suspended-sediment concentrations to meet this threshold.

South Dakota↗
USGS2008

Protocol for Monitoring Fish Assemblages in Pacific Northwest National Parks

Rivers and streams that drain from Olympic, Mount Rainier, and North Cascades National Parks are among the most protected corridors in the lower 48 States, and represent some of the largest tracts of contiguous, undisturbed habitat throughout the range of several key fish species of the Pacific Northwest. These watersheds are of high regional importance as freshwater habitat sanctuaries for native fish, where habitat conditions are characterized as having little to no disturbance from development, channelization, impervious surfaces, roads, diversions, or hydroelectric projects. Fishery resources are of high ecological and cultural importance in Pacific Northwest National Parks, and significantly contribute to economically important recreational, commercial, and tribal fisheries. This protocol describes procedures to monitor trends in fish assemblages, fish abundance, and water temperature in eight rivers and five wadeable streams in Olympic National Park during summer months, and is based on 4 years of field testing. Fish assemblages link freshwater, marine, and terrestrial ecosystems. They also serve as focal resources of national parks and are excellent indicators of ecological conditions of rivers and streams. Despite the vital importance of native anadromous and resident fish populations, there is no existing monitoring program for fish assemblages in the North Coast and Cascades Network. Specific monitoring objectives of this protocol are to determine seasonal and annual trends in: (1) fish species composition, (2) timing of migration of adult fish, (3) relative abundance, (4) age and size structure, (5) extent of non-native and hatchery fish, and (6) water temperature. To detect seasonal and annual trends in fish assemblages in reference sites, we rely on repeated and consistent annual sampling at each monitoring site. The general rationale for the repeated sampling of reference sites is to ensure that we account for the high interannual variability in fish movements and abundances in rivers. One underlying assumption is that the monitoring program is designed in perpetuity, and consequently our capability to detect trends substantially increases with time. The protocol describes sampling designs, methods, training procedures, safety considerations, data management, data analysis, and reporting. The allocation of sampling effort represents a balance between ecological considerations, a sound monitoring approach, and practical limitations caused by logistical constraints and a limited annual budget of $55,000. The widespread declines of native fish species in western North America highlights the importance and urgency of understanding trends in fish assemblages from undisturbed habitats. Seasonal and annual trends in fish assemblages will provide insights at the individual, population, and assemblage level. This protocol will allow managers to detect increases and decreases in abundance of priority management species, and occurrence of non-native, hatchery, and federally listed fish. The detection of trends in fish assemblages will allow for specific management actions that may include: implementation of more appropriate fishing regulations, evaluation of existing hatchery releases, control of non-native fish species, and prioritization of habitat restoration projects. Dissemination and communication of scientific findings on North Coast and Cascades Network fish assemblages will be a core product of this protocol, which will have much relevance to decision makers, park visitors, researchers, and educators.

Techniques and Methods↗
USGS1996

Environmental setting of benchmark streams in agricultural areas of eastern Wisconsin

This report describes the environmental setting of 20 benchmark streams in agricultural areas of eastern Wisconsin that are part of the Western Lake Michigan Drainages, National Water-Quality Assessment Program. Benchmark streams are defined as those that show minimal adverse effects from human activity, and they were selected on the basis of field reconnaissance and the following criteria: (1) available invertebrate or fisheries data that indicated good to excellent water quality, (2) instream habitat restoration for fisheries enhancement, and (3) land management to protect riparian vegetation. Information gathered from these benchmark sites can be used as a standard of reference to compare the health of other streams in agricultural areas on the basis of aquatic-biota communities, habitat, and water-quality characteristics. The information included in this report serves as background information that will be useful for a series of studies at these benchmark-stream sites in the Western Lake Michigan Drainages study unit as part of the National Water-Quality Assessment Program. Four relatively homogeneous units (RHU's) in agricultural areas that differed in bedrock and surficial geology were selected for study. RHU 1 (clayey surficial deposits over carbonate bedrock) and RHU 3 (sandy-till surficial deposits over carbonate bedrock) are in adjacent agricultural areas in the Southeastern Wisconsin Till Plains ecoregion. RHU 20 (sandy/sand and gravel surficial deposits over igneous and metamorphic bedrock) and RHU 26 (sandy/sand and gravel surficial deposits over sandstone bedrock) are in adjacent areas of agriculture and mixed forests in the North Central Hardwood Forests ecoregion. Differences in land use/land cover, and riparian vegetation and instream habitat characteristics are presented. Summaries of field measurements of water temperature, pH, specific conductance and concentrations of dissolved oxygen, total organic plus ammonia nitrogen, dissolved ammonium, nitrate plus nitrte as nitrogen, total phosphorus, dissolved orthophosphate, and atrazine are listed. Concentrations of dissolved oxygen for the sampled streams ranged from 6 A to 14.3 and met the standards set by the Wisconsin Department of Natural Resources (WDNR) for supporting fish and aquatic life. Specific conductance ranged from 98 to 753 u,Scm with values highest in RHU's 1 and 3, where streams are underlain by carbonate bedrock. Median pH did not vary greatly among the four RHU's and ranged from 6.7 to 8.8 also meeting the WDNR standards. Concentrations of total organic plus ammonia nitrogen, dissolved ammonium, total phosphorus, and dissolved orthophosphate show little variation between streams and are generally low, compared to concentrations measured in agriculturally-affected streams in the same RHU's during the same sampling period. Concentrations of the most commonly used pesticide in the study unit, atrazine, were low in all streams, and most concentrations were below trn 0.1 u,g/L detection limit. Riparian vegetation for the benchmark streams were characterized by lowland species of the native plant communities described by John T. Curtis in the "Vegetation of Wisconsin." Based on the environmental setting and water-quality information collected to date, these streams appear to show minimal adverse effects from human activity.

Wisconsin↗
USGS1999

Effectiveness of streambank-stabilization techniques along the Kenai River, Alaska

The Kenai River in southcentral Alaska is the State's most popular sport fishery and an economically important salmon river that generates as much as $70 million annually. Boatwake-induced streambank erosion and the associated damage to riparian and riverine habitat present a potential threat to this fishery. Bank-stabilization techniques commonly in use along the Kenai River were selected for evaluation of their effectiveness at attenuating boatwakes and retarding streambank erosion. Spruce trees cabled to the bank and biodegradable man-made logs (called 'bio-logs') pinned to the bank were tested because they are commonly used techniques along the river. These two techniques were compared for their ability to reduce wake heights that strike the bank and to reduce erosion of bank material, as well as for the amount and quality of habitat they provide for juvenile chinook salmon. Additionally, an engineered bank-stabilization project was evaluated because this method of bank protection is being encouraged by managers of the river. During a test that included 20 controlled boat passes, the spruce trees and the bio-log provided a similar reduction in boatwake height and bank erosion; however, the spruce trees provided a greater amount of protective habitat than the bio-log. The engineered bank-stabilization project eroded less during nine boat passes and provided more protective cover than the adjacent unprotected natural bank. Features of the bank-stabilization techniques, such as tree limbs and willow plantings that extended into the water from the bank, attenuated the boatwakes, which helped reduce erosion. These features also provided protective cover to juvenile salmon.

Alaska↗
USGS2008

Hierarchical modeling of bycatch rates of sea turtles in the western North Atlantic

Previous studies indicate that the locations of the endangered loggerhead Caretta caretta and critically endangered leatherback Dermochelys coriacea sea turtles are influenced by water temperatures, and that incidental catch rates in the pelagic longline fishery vary by region. We present a Bayesian hierarchical model to examine the effects of environmental variables, including water temperature, on the number of sea turtles captured in the US pelagic longline fishery in the western North Atlantic. The modeling structure is highly flexible, utilizes a Bayesian model selection technique, and is fully implemented in the software program WinBUGS. The number of sea turtles captured is modeled as a zero-inflated Poisson distribution and the model incorporates fixed effects to examine region-specific differences in the parameter estimates. Results indicate that water temperature, region, bottom depth, and target species are all significant predictors of the number of loggerhead sea turtles captured. For leatherback sea turtles, the model with only target species had the most posterior model weight, though a re-parameterization of the model indicates that temperature influences the zero-inflation parameter. The relationship between the number of sea turtles captured and the variables of interest all varied by region. This suggests that management decisions aimed at reducing sea turtle bycatch may be more effective if they are spatially explicit. ?? Inter-Research 2008.

Endangered Species Research↗
USGS2011

Sea otter mortality in fish and shellfish traps: Estimating potential impacts and exploring possible solutions

Sea otters Enhydra lutris can be bycaught and drowned in fishing pots and traps, which may pose a threat to the welfare of otter populations. We explored this potential problem and its solutions using a wide variety of analyses. We exposed live California (USA) sea otters to finfish traps, lobster traps, and mock Dungeness crab traps in captive trials and found that the animals attempted to enter the circular and rectangular fyke openings, with some becoming entrapped. Using both live and dead sea otters, we found that a 3 × 9 inch (7.6 × 22.9 cm) fyke opening (1 inch narrower than the 4 × 9 inch [10.2 × 22.9 cm] openings currently used in California’s commercial Dungeness crab fishery) would exclude most free-living (i.e. weaned from their mothers) otters while permitting the undiminished capture of crabs. Observer programs do not currently exist in California for these fisheries, so we calculated the effort required by an observer program to document sea otter bycatch over a range of hypothetical levels and evaluated the impact of those mortality rates on population growth. These analyses demonstrate that significant mortality from bycatch might easily go undetected, even with seemingly high levels of observer effort. As sea otters reoccupy portions of their former habitat in California, co-occurrence with finfish and shellfish traps with relatively large fyke openings will increase.

Endangered Species Research↗
USGS2003

Living on the edge: Distribution of Dungeness crab Cancer magister in a recently deglaciated fjord

Glacier Bay, Alaska, has supported a productive Dungeness crab fishery, although the area where the fishery occurred was small relative to the remainder of the Bay. We hypothesized that 1 or more abiotic limiting factors prevented crabs from surviving in the upper Bay. We tested this hypothesis by systematically sampling for relative abundance of Dungeness crabs from the mouth to the head of the Bay. We measured salinity, temperature and turbidity at each of the sampling sites and at permanent stations to characterize the habitat within and among years. We expected to find a completely truncated spatial distribution. Instead, we found that adult Dungeness crabs can survive in habitats heavily influenced by tidewater glaciers. There were significantly fewer crabs in the upper Bay and a sharp decrease in abundance around 40 km from the mouth of the Bay. The region of the Bay beyond 40 km from the mouth had a very low density of predominately adult male crabs. The narrow size frequency distribution and the lack of small crabs is consistent with poor survival in one of the pre-adult life stages in the upper Bay.

Alaska↗
USGS2019

Oyster reefs in northern Gulf of Mexico estuaries harbor diverse fish and decapod crustacean assemblages: A meta-synthesis

Oyster reefs provide habitat for numerous fish and decapod crustacean species that mediate ecosystem functioning and support vibrant fisheries. Recent focus on the restoration of eastern oyster ( Crassostrea virginica) reefs stems from this role as a critical ecosystem engineer. Within the shallow estuaries of the northern Gulf of Mexico (nGoM), the eastern oyster is the dominant reef building organism. This study synthesizes data on fish and decapod crustacean occupancy of oyster reefs across nGoM with the goal of providing management and restoration benchmarks, something that is currently lacking for the region. Relevant data from 23 studies were identified, representing data from all five U.S. nGoM states over the last 28 years. Cumulatively, these studies documented over 120,000 individuals from 115 fish and 41 decapod crustacean species. Densities as high as 2,800 ind m −2 were reported, with individual reef assemblages composed of as many as 52 species. Small, cryptic organisms that occupy interstitial spaces within the reefs, and sampled using trays, were found at an average density of 647 and 20 ind m −2 for decapod crustaceans and fishes, respectively. Both groups of organisms were comprised, on average, of 8 species. Larger-bodied fishes captured adjacent to the reef using gill nets were found at an average density of 6 ind m −2 , which came from 23 species. Decapod crustaceans sampled with gill nets had a much lower average density, <1 ind m −2 , and only contained 2 species. On average, seines captured the greatest number of fish species ( n = 33), which were made up of both facultative residents and transients. These data provide general gear-specific benchmarks, based on values currently found in the region, to assist managers in assessing nekton occupancy of oyster reefs, and assessing trends or changes in status of oyster reef associated nekton support. More explicit reef descriptions (e.g., rugosity, height, area, adjacent habitat) would allow for more precise benchmarks as these factors are important in determining nekton assemblages, and sampling efficiency.

Alabama, Florida, Louisiana, Mississippi, Texas↗
USGS2023

Vulnerability to climate change of managed stocks in the California Current large marine ecosystem

Introduction: Understanding how abundance, productivity and distribution of individual species may respond to climate change is a critical first step towards anticipating alterations in marine ecosystem structure and function, as well as developing strategies to adapt to the full range of potential changes. Methods: This study applies the NOAA (National Oceanic and Atmospheric Administration) Fisheries Climate Vulnerability Assessment method to 64 federally-managed species in the California Current Large Marine Ecosystem to assess their vulnerability to climate change, where vulnerability is a function of a species’ exposure to environmental change and its biological sensitivity to a set of environmental conditions, which includes components of its resiliency and adaptive capacity to respond to these new conditions. Results: Overall, two-thirds of the species were judged to have Moderate or greater vulnerability to climate change, and only one species was anticipated to have a positive response. Species classified as Highly or Very Highly vulnerable share one or more characteristics including: 1) having complex life histories that utilize a wide range of freshwater and marine habitats; 2) having habitat specialization, particularly for areas that are likely to experience increased hypoxia; 3) having long lifespans and low population growth rates; and/or 4) being of high commercial value combined with impacts from non-climate stressors such as anthropogenic habitat degradation. Species with Low or Moderate vulnerability are either habitat generalists, occupy deep-water habitats or are highly mobile and likely to shift their ranges. Discussion: As climate-related changes intensify, this work provides key information for both scientists and managers as they address the long-term sustainability of fisheries in the region. This information can inform near-term advice for prioritizing species-level data collection and research on climate impacts, help managers to determine when and where a precautionary approach might be warranted, in harvest or other management decisions, and help identify habitats or life history stages that might be especially effective to protect or restore.

California, Oregon, Washington↗
USGS2023

Bluegill population demographics as related to abiotic and biotic factors in Florida lakes

Research on Bluegills, Lepomis macrochirus R., is abundant but typically focuses on water bodies with similar environmental conditions. We assessed Bluegill density, relative abundance (catch per unit effort [CPUE] by electrofishing), growth, and size structure in 60 lakes with wide-ranging surface areas (2–12,412 ha), trophic states (oligotrophic–hypereutrophic), and macrophyte abundances (0.3–100 percent of lake volume inhabited [PVI]) across Florida, USA. Bluegill density and CPUE increased with lake productivity and decreased with macrophyte abundance. Bluegill growth increased with lake productivity and CPUE of stock-length Florida Bass, Micropterus floridanus L., a Bluegill predator. Bluegill size structure increased with lake productivity and decreased with Bluegill density. Results indicate that Bluegill fisheries with abundant individuals of quality size (≥150 mm) require productive (>25 μg/L chlorophyll- a concentration) lakes with moderate to high macrophyte coverage (PVI 50–100), abundant stock-length Florida Bass (>40 fish/h of electrofishing), and Bluegill densities <300 fish/ha. This study provides an approach to predict Bluegill population demographics based on abiotic and biotic factors, establish fisheries management expectations, and develop regional and lake-specific management tools.

Florida↗
USGS2022

Determination of recharge areas that supply decades old groundwater to creeks inhabited by the threatened Okaloosa darter

The Okaloosa darter ( Etheostoma okaloosae ) is a diminutive, perch-like, benthic fish that inhabits only six small, clear, and shallow creek systems that flow almost entirely within Eglin Air Force Base in the panhandle of northwest Florida. Listed as Endangered by the U.S. Fish and Wildlife Service (USFWS) in 1973, improvements in erosion control and habitat restoration led to the Okaloosa darter being downlisted from Endangered to Threatened in 2011. However, the long-term management of the species is hampered by the lack of knowledge of the spatial extent of the recharge areas that ultimately support creek flow through groundwater discharge. To address this lack of data, we collected groundwater samples from the sand and gravel aquifer beneath 11 headwater and 11 downgradient sites across six creek basins during February and December 2020. The groundwater samples were collected from 1 to 1.2 m beneath the creek bottom. Concentrations of sulfur hexafluoride (SF 6 ) were analyzed and used to calculate groundwater age (residence time), and indicated that at the 11 headwater sites, recharge occurred between 11 and 28 years ago. Groundwater ages in downgradient parts of the same creeks indicated that recharge occurred between 5 and 25 years ago. When combined with representative values of hydraulic conductivity for the sand and gravel aquifer, the ages reveal that the extent of the maximum recharge distance from the sampling sites ranged from about 222 to 2011 m from the creeks. This new information can be used by natural resource managers as additional evidence to support the USFWS Recovery Plan and proposed delisting of the Okaloosa darter from the Endangered Species List. Moreover, these results may also be useful to fisheries biologists to incorporate groundwater inputs to facilitate fisheries management.

Florida↗
USGS2021

Gene expression profiles in two razor clam populations: Discerning drivers of population status

With rapidly changing marine ecosystems, shifts in abundance and distribution are being documented for a variety of intertidal species. We examined two adjacent populations of Pacific razor clams ( Siliqua patula ) in lower Cook Inlet, Alaska. One population (east) supported a sport and personal use fishery, but this has been closed since 2015 due to declines in abundance, and the second population (west) continues to support commercial and sport fisheries. We used gene expression to investigate potential causes of the east side decline, comparing razor clam physiological responses between east and west Cook Inlet. The target gene profile used was developed for razor clam populations in Alaska based on physiological responses to environmental stressors. In this study, we identified no differences of gene expression between east and west populations, leading to two potential conclusions: (1) differences in factors capable of influencing physiology exist between the east and west and are sufficient to influence razor clam populations but are not detected by the genes in our panel, or (2) physiological processes do not account for the differences in abundance, and other factors such as predation or changes in habitat may be impacting the east Cook Inlet population.

Alaska↗
USGS2023

Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control

The global transfer of aquatic biota outside their native geographical range has resulted in dramatic changes to biological communities. Many nonnative species introductions are facilitated by human activity and then spread intra-continentally through connected watersheds once established. Resource managers therefore utilize multiple control technologies, such as management chemicals, for fisheries management to remove non-indigenous fishes. Antimycin-A (ANT-A) is a management chemical, previously registered in the United States, that has been extensively studied and used to control non-indigenous fishes. The present study examines ANT-A species sensitivity among fish and aquatic invertebrates and summarizes factors that influence toxicity. ANT-A species sensitivity distributions 20th percentile hazard concentrations (HC20) for acute studies ≤ 24 h demonstrated fish (0.088 µg/L) are 174-fold more sensitive to ANT-A than invertebrates (15.35 µg/L). Similar to previous reports, toxicity was demonstrated to be influenced by water pH, temperature, and fish mass. Therefore, the present study and results characterize ANT-A toxicity for aquatic resource managers and future use in fisheries management.

Management of Biological Invasions↗
USGS2007

Potential strategies for recovery of lake whitefish and lake herring stocks in eastern Lake Erie

Lake Erie sustained large populations of ciscoes ( Salmonidae : Coregoninae ) 120 years ago. By the end of the 19 th century, abundance of lake whitefish ( Coregonus clupeaformis ) had declined drastically. By 1925, the lake herring (a cisco) population (Coregonus artedii) had collapsed, although a limited lake herring fishery persisted in the eastern basin until the 1950s. In the latter part of the 20 th century, the composition of the fish community changed as oligotrophication proceeded. Since 1984, a limited recovery of lake whitefish has occurred, however no recovery was evident for lake herring. Current ecological conditions in Lake Erie probably will not inhibit recovery of the coregonine species. Recovery of walleye ( Sander vitreus ) and efforts to rehabilitate the native lake trout ( Salvelinus namaycush ) in Lake Erie will probably assist recovery because these piscivores reduce populations of alewife ( Alosa psuedoharengus ) and rainbow smelt ( Osmerus mordax ), which inhibit reproductive success of coregonines. Although there are considerable spawning substrates available to coregonine species in eastern Lake Erie, eggs and fry would probably be displaced by storm surge from most shoals. Site selection for stocking or seeding of eggs should consider the reproductive life cycle of the stocked fish and suitable protection from storm events. Two potential sites in the eastern basin have been identified. Recommended management procedures, including commercial fisheries, are suggested to assist in recovery. Stocking in the eastern basin of Lake Erie is recommended for both species, as conditions are adequate and the native spawning population in the eastern basin is low. For lake herring, consideration should be given to match ecophenotypes as much as possible. Egg seeding is recommended. Egg seeding of lake whitefish should be considered initially, with fingerling or yearling stocking suggested if unsuccessful. Spawning stocks of whitefish in the western basin of Lake Erie could be utilized.

Journal of Great Lakes Research↗
USGS2022

Human and ecosystem health in coastal systems

U.S. coastal economies and communities are facing an unprecedented and growing number of impacts to coastal ecosystems including beach and fishery closures, harmful algal blooms, loss of critical habitat, as well as shoreline damage. This paper synthesizes our present understanding of the dynamics of human and ecosystem health in coastal systems with a focus on the need to better understand nearshore physical process interactions with coastal pollutants and ecosystems (e.g. fate and transport, circulation, depositional environment, climate change). It is organized around two major topical areas and six subtopic areas: 1) Identifying and mitigating coastal pollutants, including fecal pollution, nutrients and harmful algal blooms, and microplastics; and 2) Resilient coastal ecosystems, which focuses on coastal fisheries, shellfish and natural and nature-based features (NNBF). Societal needs and the tools and technologies needed to address them are discussed for each subtopic. Recommendations for scientific research, observations, community engagement, and policies aim to help prioritize future research and investments. A better understanding of coastal physical processes and interactions with coastal pollutants and resilient ecosystems (e.g. fate and transport, circulation, depositional environment, climate change) is a critical need. Other research recommendations include the need to quantify potential threats to human and ecosystem health through accurate risk assessments and to quantify the resulting hazard risk reduction of natural and nature-based features; improve pollutant and ecosystem impacts forecasting by integrating frequent and new data points into existing and novel models; collect environmental data to calibrate and validate models to predict future impacts on coastal ecosystems and their evolution due to anthropogenic stressors (land-based pollution, overfishing, coastal development), climate change, and sea level rise; and develop lower cost and rapid response tools to help coastal managers better respond to pollutant and ecosystem threats.

Shore and Beach↗