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Acoustic space occupancy: Combining ecoacoustics and lidar to model biodiversity variation and detection bias across heterogeneous landscapes

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about multiple taxa and may circumvent species identification, but robust statistical technology for characterizing community-level attributes is lacking. Here, we present the Acoustic Space Occupancy Model, a flexible hierarchical framework designed to account for detection artifacts from acoustic surveys in order to model biologically relevant variation in acoustic space use among community assemblages. We illustrate its utility in a biologically and structurally diverse Amazon frontier forest landscape, a valuable test case for modeling biodiversity variation and acoustic attenuation from vegetation density. We use complementary airborne lidar data to capture aspects of 3D forest structure hypothesized to influence community composition and acoustic signal detection. Our novel analytic framework permitted us to model both the assembly and detectability of soundscapes using lidar-derived estimates of forest structure. Our empirical predictions were consistent with physical models of frequency-dependent attenuation, and we estimated that the probability of observing animal activity in the frequency channel most vulnerable to acoustic attenuation varied by over 60%, depending on vegetation density. There were also large differences in the biotic use of acoustic space predicted for intact and degraded forest habitats, with notable differences in the soundscape channels predominantly occupied by insects . This study advances the utility of ecoacoustics by providing a robust modeling framework for addressing detection bias from remote audio surveys while preserving the rich dimensionality of soundscape data, which may be critical for inferring biological patterns pertinent to multiple taxonomic groups in the tropics. Our methodology paves the way for greater integration of remotely sensed observations with high-throughput biodiversity data to help bring routine, multi-taxa monitoring to scale in dynamic and diverse landscapes.

Mato Grosso↗

A biological condition gradient for Caribbean coral reefs: Part II. Numeric rules using sessile benthic organisms

The Biological Condition Gradient (BCG) is a conceptual model used to describe incremental changes in biological condition along a gradient of increasing anthropogenic stress. As coral reefs collapse globally, scientists and managers are focused on how to sustain the crucial structure and functions, and the benefits that healthy coral reef ecosystems provide for many economies and societies. We developed a numeric (quantitative) BGC model for the coral reefs of Puerto Rico and the US Virgin Islands to transparently facilitate ecologically meaningful management decisions regarding these fragile resources. Here, reef conditions range from natural, undisturbed conditions to severely altered or degraded conditions. Numeric decision rules were developed by an expert panel for scleractinian corals and other benthic assemblages using multiple attributes to apply in shallow-water tropical fore reefs with depths <30 m. The numeric model employed decision rules based on metrics (e.g., % live coral cover, coral species richness, pollution-sensitive coral species, unproductive and sediment substrates, % cover by Orbicella spp.) used to assess coral reef condition. Model confirmation showed the numeric BCG model predicted the panel’s median site ratings for 84% of the sites used to calibrate the model and 89% of independent validation sites. The numeric BCG model is suitable for adaptive management applications and supports bioassessment and criteria development. It is a robust assessment tool that could be used to establish ecosystem condition that would aid resource managers in evaluating and communicating current or changing conditions, protect water and habitat quality in areas of high biological integrity, or develop restoration goals with stakeholders and other public beneficiaries.

Ecological Indicators↗

LogCauchy, log-sech and lognormal distributions of species abundances in forest communities

Species-abundance (SA) pattern is one of the most fundamental aspects of biological community structure, providing important information regarding species richness, species-area relation and succession. To better describe the SA distribution (SAD) in a community, based on the widely used lognormal (LN) distribution model with exp(-x2) roll-off on Preston's octave scale, this study proposed two additional models, logCauchy (LC) and log-sech (LS), respectively with roll-offs of simple x-2 and e-x. The estimation of the theoretical total number of species in the whole community, S*, including very rare species not yet collected in sample, was derived from the left-truncation of each distribution. We fitted these three models by Levenberg-Marquardt nonlinear regression and measured the model fit to the data using coefficient of determination of regression, parameters' t-test and distribution's Kolmogorov-Smirnov (KS) test. Examining the SA data from six forest communities (five in lower subtropics and one in tropics), we found that: (1) on a log scale, all three models that are bell-shaped and left-truncated statistically adequately fitted the observed SADs, and the LC and LS did better than the LN; (2) from each model and for each community the S* values estimated by the integral and summation methods were almost equal, allowing us to estimate S* using a simple integral formula and to estimate its asymptotic confidence internals by regression of a transformed model containing it; (3) following the order of LC, LS, and LN, the fitted distributions became lower in the peak, less concave in the side, and shorter in the tail, and overall the LC tended to overestimate, the LN tended to underestimate, while the LS was intermediate but slightly tended to underestimate, the observed SADs (particularly the number of common species in the right tail); (4) the six communities had some similar structural properties such as following similar distribution models, having a common modal octave and a similar proportion of common species. We suggested that what follows the LN distribution should follow (or better follow) the LC and LS, and that the LC, LS and LN distributions represent a "sequential distribution set" in which one can find a best fit to the observed SAD. ?? 2004 Elsevier B.V. All rights reserved.

Ecological Modelling↗

Modeling the impacts of hunting on the population dynamics of red howler monkeys ( Alouatta seniculus )

Overexploitation of wildlife populations occurs across the humid tropics and is a significant threat to the long-term survival of large-bodied primates. To investigate the impacts of hunting on primates and ways to mitigate them, we developed a spatially explicit, individual-based model for a landscape that included hunted and un-hunted areas. We used the large-bodied neotropical red howler monkey ( Alouatta seniculus ) as our case study species because its life history characteristics make it vulnerable to hunting. We modeled the influence of different rates of harvest and proportions of landscape dedicated to un-hunted reserves on population persistence, population size, social dynamics, and hunting yields of red howler monkeys. In most scenarios, the un-hunted populations maintained a constant density regardless of hunting pressure elsewhere, and allowed the overall population to persist. Therefore, the overall population was quite resilient to extinction; only in scenarios without any un-hunted areas did the population go extinct. However, the total and hunted populations did experience large declines over 100 years under moderate and high hunting pressure. In addition, when reserve area decreased, population losses and losses per unit area increased disproportionately. Furthermore, hunting disrupted the social structure of troops. The number of male turnovers and infanticides increased in hunted populations, while birth rates decreased and exacerbated population losses due to hunting. Finally, our results indicated that when more than 55% of the landscape was harvested at high (30%) rates, hunting yields, as measured by kilograms of biomass, were less than those obtained from moderate harvest rates. Additionally, hunting yields, expressed as the number of individuals hunted/year/km 2 , increased in proximity to un-hunted areas, and suggested that dispersal from un-hunted areas may have contributed to hunting sustainability. These results indicate that un-hunted areas serve to enhance hunting yields, population size, and population persistence in hunted landscapes. Therefore, spatial regulation of hunting via a reserve system may be an effective management strategy for sustainable hunting, and we recommend it because it may also be more feasible to implement than harvest quotas or restrictions on season length.

Guárico↗

Monitoring mangrove forest dynamics of the Sundarbans in Bangladesh and India using multi-temporal satellite data from 1973 to 2000

Mangrove forests in many parts of the world are declining at an alarming rate—possibly even more rapidly than inland tropical forests. The rate and causes of such changes are not known. The forests themselves are dynamic in nature and are undergoing constant changes due to both natural and anthropogenic forces. Our research objective was to monitor deforestation and degradation arising from both natural and anthropogenic forces. We analyzed multi-temporal satellite data from 1970s, 1990s, and 2000s using supervised classification approach. Our spatio-temporal analysis shows that despite having the highest population density in the world in its periphery, areal extent of the mangrove forest of the Sundarbans has not changed significantly (approximately 1.2%) in the last ∼25 years. The forest is however constantly changing due to erosion, aggradation, deforestation and mangrove rehabilitation programs. The net forest area increased by 1.4% from the 1970s to 1990 and decreased by 2.5% from 1990 to 2000. The change is insignificant in the context of classification errors and the dynamic nature of mangrove forests. This is an excellent example of the co-existence of humans with terrestrial and aquatic plant and animal life. The strong commitment of governments under various protection measures such as forest reserves, wildlife sanctuaries, national parks, and international designations, is believed to be responsible for keeping this forest relatively intact (at least in terms of area). While the measured net loss of mangrove forest is not that high, the change matrix shows that turnover due to erosion, aggradation, reforestation and deforestation was much greater than net change. The forest is under threat from natural and anthropogenic forces leading to forest degradation, primarily due to top-dying disease and over-exploitation of forest resources.

Estuarine, Coastal and Shelf Science↗

Mangrove forests in a rapidly changing world: Global change impacts and conservation opportunities along the Gulf of Mexico coast

Mangrove forests are highly-productive intertidal wetlands that support many ecosystem goods and services. In addition to providing fish and wildlife habitat, mangrove forests improve water quality, provide seafood, reduce coastal erosion, supply forest products, support coastal food webs, minimize flooding impacts, and support high rates of carbon sequestration. Despite their tremendous societal value, mangrove forests are threatened by many aspects of global change. Here, we examine the effects of global change on mangrove forests along the Gulf of Mexico coast, which is a valuable region for advancing understanding of global change impacts because the region spans multiple ecologically-relevant abiotic gradients that are representative of other mangrove transition zones across the world. We consider the historical and anticipated future responses of mangrove forests to the following aspects of global change: temperature change, precipitation change, accelerated sea-level rise, tropical cyclone intensification, elevated atmospheric carbon dioxide, eutrophication, invasive non-native species, and land use change. For each global change factor, we provide an initial global perspective but focus primarily on the three countries that border the Gulf of Mexico: United States, Mexico, and Cuba. The interactive effects of global change can have large ecological consequences, and we provide examples that highlight their importance. While some interactions between global change drivers can lead to mangrove mortality and loss, others can lead to mangrove expansion at the expense of other ecosystems. Finally, we discuss strategies for using restoration and conservation to maximize the adaptive capacity of mangrove forests to global change. To ensure that the ecosystem goods and services provided by mangrove forests continue to be available for future generations, there is a pressing need to better protect, manage, and restore mangrove forests as well as the adjacent ecosystems that provide opportunities for adaptation in response to global change.

Estuarine, Coastal and Shelf Science↗

Dynamic Energy Budget modelling to predict eastern oyster growth, reproduction, and mortality under river management and climate change scenarios

Eastern oysters growing in deltaic Louisiana estuaries in the northern Gulf of Mexico must tolerate considerable salinity variation from natural climate variability (e.g., rainfall and stream run-off pushing isohalines offshore; tropical storms pushing isohalines inshore) and man-made diversions and siphons releasing freshwater from the Mississippi River. These salinity variations are predicted to increase with future climate change because of the increased frequency of stronger storms and also in response to proposed large-scale river diversions. Increased Mississippi River flow into coastal estuaries from river diversions, along with potential changes in rainfall and stream run-off from climate change will alter spatial and temporal salinity patterns. In this study we used an individual Dynamic Energy Budget model to predict growth and reproductive potential of eastern oysters across observed and simulated salinity gradients corresponding to different climate and river management scenarios. We used validated model outputs of salinity from a coupled hydrology-hydrodynamic model to assess the current impacts of Davis Pond diversion discharge on oysters located downstream. Under a high diversion discharge scenario oyster growth potential was reduced by 9%, 4%, and 1% in Upper, Mid, and Lower Bay locations, respectively, as compared to a limited discharge year. Reproductive outputs decreased by 34% and 2% in the Upper and Lower Bay locations, respectively, and increased by 2% at the Mid Bay site. In scenarios combining predicted increased temperature with the effect of diversions, all oysters located in the Upper and Mid Bay sites died due to severe summer conditions (high temperatures combined with low salinity). Overall, oysters in down-estuary locations, influenced by both estuarine river management and gulf conditions demonstrated significant tolerance to changing salinity and temperature conditions from diversions alone and when combined with climate change. In contrast, oysters located up-estuary, and exposed to more extreme salinity impacts from river management, demonstrated potentially lethal impacts through direct mortality, and reduced sustainability through decrease in reproductive effort. These predictions at the individual level may translate into less sustainable populations in the most extreme scenarios; restoration and production plans would benefit from accounting for these impacts on reproductive output particularly as decision makers seek to restore critical oyster areas.

Louisiana↗

Improving the ecological relevance of toxicity tests on scleractinian corals: Influence of season, life stage, and seawater temperature

Metal pollutants in marine systems are broadly acknowledged as deleterious: however, very little data exist for tropical scleractinian corals. We address this gap by investigating how life-history stage, season and thermal stress influence the toxicity of copper (Cu) and lead (Pb) in the coral Pocillopora damicornis . Our results show that under ambient temperature, adults and larvae appear to tolerate exposure to unusually high levels of copper (96 h-LC 50 ranging from 167 to 251 &mu;g Cu L &minus;1 ) and lead (from 477 to 742 &mu;g Pb L &minus;1 ). Our work also highlights that warmer conditions (seasonal and experimentally manipulated) reduce the tolerance of adults and larvae to Cu toxicity. Despite a similar trend observed for the response of larvae to Pb toxicity to experimentally induced increase in temperature, surprisingly adults were more resistant in warmer condition to Pb toxicity. In the summer adults were less resistant to Cu toxicity (96 h-LC 50 = 175 &mu;g L &minus;1 ) than in the winter (251 &mu;g L &minus;1 ). An opposite trend was observed for the Pb toxicity on adults between summer and winter (96 h-LC 50 of 742 vs 471 &mu;g L &minus;1 , respectively). Larvae displayed a slightly higher sensitivity to Cu and Pb than adults. An experimentally induced 3 &deg;C increase in temperature above ambient decreased larval resistance to Cu and Pb toxicity by 23&ndash;30% (96 h-LC 50 of 167 vs 129 &mu;g Cu L &minus;1 and 681 vs 462 &mu;g Pb L &minus;1 ). Our data support the paradigm that upward excursions in temperature influence physiological processes in corals that play key roles in regulating metal toxicity. These influences are more pronounced in larva versus adult corals. These findings are important when contextualized climate change-driven warming in the oceans and highlight that predictions of ecological outcomes to metal pollutants will be improved by considering environmental context and the life stages of organism under study.

Environmental Pollution↗

Data-driven modeling of surface temperature anomaly and solar activity trends

A novel two-step modeling scheme is used to reconstruct and analyze surface temperature and solar activity data at global, hemispheric, and regional scales. First, the self-organizing map (SOM) technique is used to extend annual modern climate data from the century to millennial scale. The SOM component planes are used to identify and quantify strength of nonlinear relations among modern surface temperature anomalies (<150 years), tropical and extratropical teleconnections, and Palmer Drought Severity Indices (0–2000 years). Cross-validation of global sea and land surface temperature anomalies verifies that the SOM is an unbiased estimator with less uncertainty than the magnitude of anomalies. Second, the quantile modeling of SOM reconstructions reveal trends and periods in surface temperature anomaly and solar activity whose timing agrees with published studies. Temporal features in surface temperature anomalies, such as the Medieval Warm Period, Little Ice Age, and Modern Warming Period, appear at all spatial scales but whose magnitudes increase when moving from ocean to land, from global to regional scales, and from southern to northern regions. Some caveats that apply when interpreting these data are the high-frequency filtering of climate signals based on quantile model selection and increased uncertainty when paleoclimatic data are limited. Even so, all models find the rate and magnitude of Modern Warming Period anomalies to be greater than those during the Medieval Warm Period. Lastly, quantile trends among reconstructed equatorial Pacific temperature profiles support the recent assertion of two primary El Niño Southern Oscillation types. These results demonstrate the efficacy of this alternative modeling approach for reconstructing and interpreting scale-dependent climate variables.

Environmental Modelling and Software↗

Coral 13C/12C records of vertical seafloor displacement during megathrust earthquakes west of Sumatra

The recent surge of megathrust earthquakes and tsunami disasters has highlighted the need for a comprehensive understanding of earthquake cycles along convergent plate boundaries. Space geodesy has been used to document recent crustal deformation patterns with unprecedented precision, however the production of long paleogeodetic records of vertical seafloor motion is still a major challenge. Here we show that carbon isotope ratios ( ) in the skeletons of massive Porites corals from west Sumatra record abrupt changes in light exposure resulting from coseismic seafloor displacements. Validation of the method is based on the coral response to uplift (and subsidence) produced by the March 2005 M w 8.6 Nias&ndash;Simeulue earthquake, and uplift further south around Sipora Island during a M&sim;8.4 megathrust earthquake in February 1797. At Nias, the average step-change in coral was 0.6&plusmn;0.1&permil;/m for coseismic displacements of +1.8 m and &minus;0.4 m in 2005. At Sipora, a distinct change in Porites microatoll growth morphology marks coseismic uplift of 0.7 m in 1797. In this shallow water setting, with a steep light attenuation gradient, the step-change in microatoll is 2.3&permil;/m , nearly four times greater than for the Nias Porites . Considering the natural variability in coral skeletal , we show that the lower detection limit of the method is around 0.2 m of vertical seafloor motion. Analysis of vertical displacement for well-documented earthquakes suggests this sensitivity equates to shallow events exceeding M w &sim;7.2 in central megathrust and back-arc thrust fault settings. Our findings indicate that the coral paleogeodesy technique could be applied to convergent tectonic margins throughout the tropical western Pacific and eastern Indian oceans, which host prolific coral reefs, and some of the world's greatest earthquake catastrophes. While our focus here is the link between coral , light exposure and coseismic crustal deformation, the same principles could be used to characterize interseismic strain during earthquake cycles over the last several millennia.

Earth and Planetary Science Letters↗

Effects of roads, topography, and land use on forest cover dynamics in the Brazilian Atlantic Forest

Roads and topography can determine patterns of land use and distribution of forest cover, particularly in tropical regions. We evaluated how road density, land use, and topography affected forest fragmentation, deforestation and forest regrowth in a Brazilian Atlantic Forest region near the city of São Paulo. We mapped roads and land use/land cover for three years (1962, 1981 and 2000) from historical aerial photographs, and summarized the distribution of roads, land use/land cover and topography within a grid of 94 non-overlapping 100 ha squares. We used generalized least squares regression models for data analysis. Our models showed that forest fragmentation and deforestation depended on topography, land use and road density, whereas forest regrowth depended primarily on land use. However, the relationships between these variables and forest dynamics changed in the two studied periods; land use and slope were the strongest predictors from 1962 to 1981, and past (1962) road density and land use were the strongest predictors for the following period (1981–2000). Roads had the strongest relationship with deforestation and forest fragmentation when the expansions of agriculture and buildings were limited to already deforested areas, and when there was a rapid expansion of development, under influence of São Paulo city. Furthermore, the past (1962) road network was more important than the recent road network (1981) when explaining forest dynamics between 1981 and 2000, suggesting a long-term effect of roads. Roads are permanent scars on the landscape and facilitate deforestation and forest fragmentation due to increased accessibility and land valorization, which control land-use and land-cover dynamics. Topography directly affected deforestation, agriculture and road expansion, mainly between 1962 and 1981. Forest are thus in peril where there are more roads, and long-term conservation strategies should consider ways to mitigate roads as permanent landscape features and drivers facilitators of deforestation and forest fragmentation.

São Paulo↗

Mammal species composition and habitat associations in a commercial forest and mixed-plantation landscape

Commercial forest plantations of fast-growing species have been established globally to meet increasing demands for timber, pulpwood, and other wood products. Industrial plantations may contribute to tropical forest conservation by reducing exploitation of primary and secondary natural forests. Whether such plantations can support critical elements of biodiversity, including provision of habitat and movement corridors for species of conservation concern, is an important question in Southeast Asia. Our objectives were to investigate relationships between habitat gradients and community attributes of medium-sized to large mammals in a mixed plantation mosaic in Bengkoka Peninsula, Sabah, East Malaysia. Data on mammals were collected using 59 remote camera stations deployed for a minimum of 21 days (24-hour sampling occasions) in three major land-use types: natural forest, Acacia plantations, and non- Acacia plantations (oil palm, rubber, young Eucalyptus pellita ). We used sample-based rarefaction to evaluate variation in species richness with land use. We used generalized linear models and ordination analyses to evaluate whether variation in mammal detections and species composition was associated with habitat gradients. We recorded >22 mammal species over 1572 sampling occasions. Natural forest area was positively associated with mammal species richness and detections of threatened mammals. Overall detections of mammals increased with decreasing elevation, but decreased within, and close to, Acacia plantations. Detections of threatened mammals increased with greater proportions of natural forest and Acacia and increasing proximity to roads. Sample-based rarefaction indicated that species richness of mammals in Acacia and natural forest was considerably higher than observed. Both natural forest and Acacia plantations shared similar values for species richness and diversity, but non- Acacia plantations scored lower in both metrics. Mammal species composition differed among different types of land use. Smaller generalists used non- Acacia plantation forests. A variety of other mammals including some threatened species used natural forest, Acacia , or a combination of the two. Acacia plantations possess attributes supporting a diversity of mammal species, including those we defined as threatened based on IUCN criteria. However, this is likely a function of the habitat mosaic with natural forest in the study area and the mangrove forests on the fringes of the peninsula serving as refuges of mammal diversity. Retention and restoration of natural and mangrove forests may therefore enhance the conservation potential of industrial Acacia plantations. Additionally, controlled road access in conjunction with anti-poaching operations and strengthening public awareness are essential to reduce the threat of overexploitation.

Forest Ecology and Management↗

Rayleigh-based, multi-element coral thermometry: A biomineralization approach to developing climate proxies

This study presents a new approach to coral thermometry that deconvolves the influence of water temperature on skeleton composition from that of “vital effects”, and has the potential to provide estimates of growth temperatures that are accurate to within a few tenths of a degree Celsius from both tropical and cold-water corals. Our results provide support for a physico-chemical model of coral biomineralization, and imply that Mg2+ substitutes directly for Ca2+ in biogenic aragonite. Recent studies have identified Rayleigh fractionation as an important influence on the elemental composition of coral skeletons. Daily, seasonal and interannual variations in the amount of aragonite precipitated by corals from each “batch” of calcifying fluid can explain why the temperature dependencies of elemental ratios in coral skeleton differ from those of abiogenic aragonites, and are highly variable among individual corals. On the basis of this new insight into the origin of “vital effects” in coral skeleton, we developed a Rayleigh-based, multi-element approach to coral thermometry. Temperature is resolved from the Rayleigh fractionation signal by combining information from multiple element ratios (e.g., Mg/Ca, Sr/Ca, Ba/Ca) to produce a mathematically over-constrained system of Rayleigh equations. Unlike conventional coral thermometers, this approach does not rely on an initial calibration of coral skeletal composition to an instrumental temperature record. Rather, considering coral skeletogenesis as a biologically mediated, physico-chemical process provides a means to extract temperature information from the skeleton composition using the Rayleigh equation and a set of experimentally determined partition coefficients. Because this approach is based on a quantitative understanding of the mechanism that produces the “vital effect” it should be possible to apply it both across scleractinian species and to corals growing in vastly different environments. Where instrumental temperature records are available, a Rayleigh-based framework allows the effects of stress on coral calcification to be identified on the basis of anomalies in the skeletal composition.

Geochimica et Cosmochimica Acta↗

An initial investigation into the organic matter biogeochemistry of the Congo River

The Congo River, which drains pristine tropical forest and savannah and is the second largest exporter of terrestrial carbon to the ocean, was sampled in early 2008 to investigate organic matter (OM) dynamics in this historically understudied river basin. We examined the elemental (%OC, %N, C:N), isotopic (&delta; 13 C, &Delta; 14 C, &delta; 15 N) and biochemical composition (lignin phenols) of coarse particulate (>63 &mu;m; CPOM) and fine particulate (0.7&ndash;63 &mu;m; FPOM) OM and DOC, &delta; 13 C, &Delta; 14 C and lignin phenol composition with respect to dissolved OM (<0.7 &mu;m; DOM) from five sites in the Congo River Basin. At all sample locations the organic carbon load was dominated by the dissolved phase (~82&ndash;89% of total organic carbon) and the total suspended sediment load was principally fine particulate material (~81&ndash;91% fine suspended sediment). Distinct compositional and isotopic differences were observed between all fractions. Congo CPOM, FPOM and DOM all originated from vegetation and soil inputs as evidenced by elemental, isotopic and lignin phenol data, however FPOM was derived from much older carbon pools (mean &Delta; 14 C = -62.2 &plusmn; -13.2&permil;, n = 5) compared to CPOM and DOM (mean &Delta; 14 C = 55.7 &plusmn; 30.6&permil;, n = 4 and 73.4 &plusmn; 16.1&permil;, n = 5 respectively). The modern radiocarbon ages for DOM belie a degraded lignin compositional signature (i.e. elevated acid:aldehyde ratios (Ad:Al) relative to CPOM and FPOM), and indicate that the application of OM degradation patterns derived from particulate phase studies to dissolved samples needs to be reassessed: these elevated ratios are likely attributable to fractionation processes during solubilization of plant material. The relatively low DOM carbon-normalized lignin yields (&Lambda;8; 0.67&ndash;1.12 (mg(100 mg OC) -1 )) could also reflect fractionation processes, however, they have also been interpreted as an indication of significant microbial or algal sources of DOM. CPOM appears to be well preserved higher vascular plant material as evidenced by its modern radiocarbon age, elevated C:N (17.2&ndash;27.1) and &Lambda;8 values (4.56&ndash;7.59 (mg(100 mg OC) -1 )). In relation to CPOM, the aged FPOM fraction (320&ndash;580 ybp 14 C ages) was comparatively degraded, as demonstrated by its nitrogen enrichment (C:N 11.4&ndash;14.3), lower &Lambda;8 (2.80&ndash;4.31 (mg(100 mg OC) -1 )) and elevated lignin Ad:Al values similar to soil derived OM. In this study we observed little modification of the OM signature from sample sites near the cities of Brazzaville and Kinshasa to the head of the estuary (~350 km) highlighting the potential for future studies to assess seasonal and long-term OM dynamics from this logistically feasible location and derive relevant information with respect to OM exported to the Atlantic Ocean. The relative lack of OM data for the Congo River Basin highlights the importance of studies such as this for establishing baselines upon which to gauge future change.

Congo River↗

Quantifying chemical weathering rates along a precipitation gradient on Basse-Terre Island, French Guadeloupe: new insight from U-series isotopes in weathering rinds

Inside soil and saprolite, rock fragments can form weathering clasts (alteration rinds surrounding an unweathered core) and these weathering rinds provide an excellent field system for investigating the initiation of weathering and long term weathering rates. Recently, uranium-series (U-series) disequilibria have shown great potential for determining rind formation rates and quantifying factors controlling weathering advance rates in weathering rinds. To further investigate whether the U-series isotope technique can document differences in long term weathering rates as a function of precipitation, we conducted a new weathering rind study on tropical volcanic Basse-Terre Island in the Lesser Antilles Archipelago. In this study, for the first time we characterized weathering reactions and quantified weathering advance rates in multiple weathering rinds across a steep precipitation gradient. Electron microprobe (EMP) point measurements, bulk major element contents, and U-series isotope compositions were determined in two weathering clasts from the Deshaies watershed with mean annual precipitation (MAP) = 1800 mm and temperature (MAT) = 23 °C. On these clasts, five core-rind transects were measured for locations with different curvature (high, medium, and low) of the rind-core boundary. Results reveal that during rind formation the fraction of elemental loss decreases in the order: Ca ≈ Na > K ≈ Mg > Si ≈ Al > Zr ≈ Ti ≈ Fe. Such observations are consistent with the sequence of reactions after the initiation of weathering: specifically, glass matrix and primary minerals (plagioclase, pyroxene) weather to produce Fe oxyhydroxides, gibbsite and minor kaolinite. Uranium shows addition profiles in the rind due to the infiltration of U-containing soil pore water into the rind as dissolved U phases. U is then incorporated into the rind as Fe-Al oxides precipitate. Such processes lead to significant U-series isotope disequilibria in the rinds. This is the first time that multiple weathering clasts from the same watershed were analyzed for U-series isotope disequlibrian and show consistent results. The U-series disequilibria allowed for the determination of rind formation ages and weathering advance rates with a U-series mass balance model. The weathering advance rates generally decreased with decreasing curvature: ∼0.17 ± 0.10 mm/kyr for high curvature, ∼0.12 ± 0.05 mm/kyr for medium curvature, and ∼0.11 ± 0.04, 0.08 ± 0.03, 0.06 ± 0.03 mm/kyr for low curvature locations. The observed positive correlation between the curvature and the weathering rates is well supported by predictions of weathering models, i.e., that the curvature of the rind-core boundary controls the porosity creation and weathering advance rates at the clast scale. At the watershed scale, the new weathering advance rates derived on the low curvature transects for the relatively dry Deshaies watershed (average rate of 0.08 mm/kyr; MAP = 1800 mm and MAT = 23 °C) are ∼60% slower than the rind formation rates previously determined in the much wetter Bras David watershed (∼0.18 mm/kyr, low curvature transect; MAP = 3400 mm and MAT = 23 °C) also on Basse-Terre Island. Thus, a doubling of MAP roughly correlates with a doubling of weathering advance rate. The new rind study highlights the effect of precipitation on weathering rates over a time scale of ∼100 kyr. Weathering rinds are thus a suitable system for investigating long-term chemical weathering across environmental gradients, complementing short-term riverine solute fluxes.

Basse-Terre Island↗

Methane oxidation dynamics in a karst subterranean estuary

Chemical gradients between fresh, brackish and saline waters shape biogeochemical reactions and organic matter transformation within subterranean estuaries. In the Yucatán Peninsula’s karst subterranean estuary (KSE), methane and dissolved organic matter generated during the anaerobic decomposition of tropical forest vegetation are transported into flooded cave networks where microbial consumption greatly reduces their concentrations in the groundwater. To test the hypothesis that chemoclines associated with salinity gradients of the KSE are sites of methane oxidation, we obtained methane concentration and δ 13 C profiles of unprecedented vertical resolution from within a fully-submerged cave system located 6.6 km inland from the coastline using the ‘OctoPiPi’ (OPP) water sampler. Along a 12–24 cm thick low-salinity-halocline at ∼4.5 m water depth, salinity increased from fresh to brackish (0.2–1.8 psu), methane concentrations decreased, and δ 13 C values increased, as expected for microbial methane oxidation. The underlying brackish water had elevated oxygen concentrations compared to the always anoxic freshwater, suggesting that aerobic methane oxidation is the dominant process facilitating methane consumption. By contrast, as salinity increased from 1.8 to 36 psu through a 24–36 cm thick high-salinity-halocline between the meteoric lens and the saline groundwater at ∼20 m water depth, methane concentrations and δ 13 C values were constant. Conservative mixing and kinetic isotope models incorporating the methane data confirm a hotspot for microbial methane oxidation at the low-salinity-halocline. At least 98% of methane originating in the anoxic freshwaters was removed before its transport via channelized flow towards the coastline. These findings provide novel insight into the spatial constraints of methane dynamics within a karst subterranean estuary.

Ox Bel Ha cave system↗

Freezing temperatures restrict woody plant recruitment and restoration efforts in abandoned montane pastures

Tropical montane forests are being lost at an alarming rate but harbor some of the globe’s most unique biodiversity. The Hawaiian archipelago is a prime example of the importance of high elevation forests to species conservation and persistence as they serve as the last refugia for Hawaiian birds. Yet these forests have been converted to invasive dominated pastures, and efforts to restore them have been met with limited success. Unsuccessful forest restoration may be due to freezing temperatures acting as a demographic bottleneck by killing seedlings recruiting into pastures. We determined freezing tolerances of eight common native woody plants at a high-elevation forest on Hawaiʻi Island and compared these freezing tolerances to two years of site-specific winter temperatures and 17 years of regional temperature records. Low temperature extremes were more severe and common in pastures than under nearby 30-year-old canopy trees. Freezing temperatures over two years were severe enough to damage leaf tissues of six of eight species tested. Those species that displayed the greatest freezing tolerance were also those found naturally recruiting into open pastures. Temperature trends over the past 17 years show monthly minimum temperatures are not increasing as predicted by climate change. Persistent severe freezing events may limit seedling recruitment in the pasture, slowing native woody plant expansion into these abandoned pastures. The species-level differences in freezing tolerance show that current management actions are using species that are at high risk to freezing damage outside of the forest canopy and that alternative species may warrant consideration.

Global Ecology and Conservation↗

Forest bird population status on Saipan, a small oceanic island

Tropical oceanic islands are critical biodiversity hotspots where population monitoring can help to determine the status and trends of rare and endangered species. Saipan is the second largest island in the Mariana Islands and contains many endemic and range-restricted bird species. Surveys of forest birds were conducted on Saipan using point-transect distance sampling, starting in 1982. To determine population status for Saipan avifauna, we generated abundance estimates based on surveys conducted in 1982, 1997, 2007, and 2018. We also assessed community composition by exploring if there were changes in assemblage diversity, total forest bird abundance, and ratio of native to non-native populations over time. For the 2018 survey, there were 5791 detections of 18 species during 242 counts, with six of 18 species detected at > 50 % of the counts and with relatively high abundance, while 12 species were detected at < 50 % of the counts and were uncommon or rare. The most abundant species was Bridled White eye (nosa', Zosterops conspicillatus saypani ) at > 40 birds/ha and the least common species was the Saipan Reed Warbler (gå'ga' karisu, Acrocephalus hiwae) at < 1 bird/ha. We found that the community composition is becoming slightly more even over time and the overall community abundance is stable (around 375,000 birds), but non-native species have become more common while native species have remained stable. Results from this study can be used to inform conservation management of forest birds in Saipan and contribute to a broader understanding of forest bird status in the Marianas.

Saipan↗