SEARCH · USGS Science

Results for “Pacific Studies”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 775 records · Page 43Linked to original sources

USGS2013

Spatial variability of the response to climate change in regional groundwater systems -- examples from simulations in the Deschutes Basin, Oregon

We examine the spatial variability of the response of aquifer systems to climate change in and adjacent to the Cascade Range volcanic arc in the Deschutes Basin, Oregon using downscaled global climate model projections to drive surface hydrologic process and groundwater flow models. Projected warming over the 21st century is anticipated to shift the phase of precipitation toward more rain and less snow in mountainous areas in the Pacific Northwest, resulting in smaller winter snowpack and in a shift in the timing of runoff to earlier in the year. This will be accompanied by spatially variable changes in the timing of groundwater recharge. Analysis of historic climate and hydrologic data and modeling studies show that groundwater plays a key role in determining the response of stream systems to climate change. The spatial variability in the response of groundwater systems to climate change, particularly with regard to flow-system scale, however, has generally not been addressed in the literature. Here we simulate the hydrologic response to projected future climate to show that the response of groundwater systems can vary depending on the location and spatial scale of the flow systems and their aquifer characteristics. Mean annual recharge averaged over the basin does not change significantly between the 1980s and 2080s climate periods given the ensemble of global climate models and emission scenarios evaluated. There are, however, changes in the seasonality of groundwater recharge within the basin. Simulation results show that short-flow-path groundwater systems, such as those providing baseflow to many headwater streams, will likely have substantial changes in the timing of discharge in response changes in seasonality of recharge. Regional-scale aquifer systems with flow paths on the order of many tens of kilometers, in contrast, are much less affected by changes in seasonality of recharge. Flow systems at all spatial scales, however, are likely to reflect interannual changes in total recharge. These results provide insights into the possible impacts of climate change to other regional aquifer systems, and the streams they support, where discharge points represent a range of flow system scales.

Oregon↗

USGS2017

The USGS National Wildlife Health Center: Advancing wildlife and ecosystem health

In 1975, the Federal government responded to the need for establishing national expertise in wildlife health by creating the National Wildlife Health Center (NWHC), a facility within the Department of the Interior; the NWHC is the only national center dedicated to wildlife disease detection, control, and prevention. Its mission is to provide national leadership to safeguard wildlife and ecosystem health through active partnerships and exceptional science. Comparisons are often made between the NWHC, which strives to protect the health of our Nation’s wildlife, and the Centers for Disease Control and Prevention (CDC), which strive to protect public health. The NWHC, a science center of the U.S. Geological Survey (USGS) with specialized laboratories, works to safeguard the Nation’s wildlife from diseases by studying the causes and drivers of these threats, and by developing strategies to prevent and manage them. In addition to the main campus, located in Madison, Wisconsin, the NWHC also operates the Honolulu Field Station that addresses wildlife health issues in Hawaii and the Pacific Region.

Fact Sheet↗

USGS2009

Aeromagnetic survey map of the central California Coast Ranges

This aeromagnetic survey was flown as part of a Cooperative Research and Development Agreement (CRADA) with the Pacific Gas and Electric Company and is intended to promote further understanding of the geology and structure in the central California Coast Ranges by serving as a basis for geophysical interpretations and by supporting geological mapping, mineral and water resource investigations, and other topical studies. Local spatial variations in the Earth's magnetic field (evident as anomalies on aeromagnetic maps) reflect the distribution of magnetic minerals, primarily magnetite, in the underlying rocks. In many cases the volume content of magnetic minerals can be related to rock type, and abrupt spatial changes in the amount of magnetic minerals can commonly mark lithologic or structural boundaries. Bodies of serpentinite and other mafic and ultramafic rocks tend to produce the most intense magnetic anomalies, but such generalizations must be applied with caution because rocks with more felsic compositions, such as the porphyritic granodiorite-granite of the La Panza Range, and even some sedimentary units, also can cause measurable magnetic anomalies.

California↗

USGS2026

The USGS Rotating X-ray Computed Tomography (RXCT) Coral-Core Archive: Scope, access, and standardization

We announce the U.S. Geological Survey (USGS) Rotating X-ray Computed Tomography (RXCT) Coral-Core Archive, a digital resource derived from ~400 coral reef cores curated at the USGS Pacific and St. Petersburg Coastal and Marine Science Centers. The archive de-livers calibrated 3-D image volumes that enable reproducible values of skeletal density, linear extension, and calcification from decadal-to-centennials scale records of coral growth and bioerosion. Cross-study comparability within the archive is supported by a unified RXCT workflow that minimizes imaging artifacts. This includes rejecting im-age-intensity–density regressions with r² < 0.95, back-calculating standard densities to verify a ±10% target precision, and confirming that band-averaged density values fall within published species- and site-specific ranges. Given global coral-reef decline and the rarity of physical archives, we release data under FAIR (Findable, Accessible, Interopera-ble, Reusable) principles. Calibrated imagery and scan metadata are distributed through CoralCache/CoralCT for analysis (DeCarlo et al., 2025), while core locations and collection metadata are published through the USGS Geologic Core and Sample Database (DOI: 10.5066/F7319TR3) with links to CT slice imagery in a USGS ScienceBase repository (DOI: 10.5066/P139Y9H4). This archive provides a powerful dataset for evaluating environ-mental controls on coral growth, establishing restoration baselines, and improving coastal-hazard assessments in the face of global coral-reef declines.

American Somoa, Guam, Florida, Hawaii, U.S. Virgin↗

USGS2000

Response of geese to aircraft disturbances

Low-flying aircraft can affect behavior, physiology, and distribution of wildlife (Manci et al., 1988), and over time, may impact a population by reducing survival and reproductive performance. Thus, it is important to identify the particular aspects of overflights that affect animals so that management strategies can be developed to minimize adverse effects. Waterfowl are particularly sensitive to low-flying aircraft (Manci et al., 1988) and respond at all stages of their annual cycle, including breeding (Gollop et al., 1974a; Laing, 1991), molting (Derksen et al., 1979; Mosbech and Glahder, 1991), migration (Jones and Jones, 1966; Belanger and Bedard, 1989), and wintering (Owens, 1977; Kramer et al., 1979; Henry, 1980). Waterfowl response can be quite variable both within and among species (Fleming et al., 1996). For example, response can vary with age, sex, and body condition of individual, habitat type and quality, and previous exposure to aircraft (Dahlgren and Korshgen, 1992). However, the most important factors influencing a response are aircraft type (Davis and Wiseley, 1974; Jensen, 1990), noise (Mosbech and Glahder, 1991; Temple, 1993), and proximity to the birds, as measured in altitude and lateral distance (Derksen et al., 1979; Belanger and Bedard, 1989; Ward et al., 1994). Wildlife managers can reduce impacts on a population by controlling or modifying these factors. In an experimental study conducted at Izembek Lagoon in southwestern Alaska in 1985-1988 (Ward and Stehn, 1989), we conducted planned aircraft overflights with control of aircraft type, noise, altitude, and lateral distance to flocks (hereafter called lateral distance) to measure behavioral response of fall-staging Pacific brant ( Branta bernicla nigricans ) and Canada geese ( B. canadensis taverneri ) to fixed- and rotary-wing aircraft. These data were then used to develop predictive models of the relationship between aircraft type, noise, altitude, and lateral distance and the response of geese (Ward et al., 1989). We also developed a simulation model incorporating energy intake and daily energy costs to assess the long-term consequences of repeated overflights on the ability of brant to obtain sufficient energy reserves necessary for fall migration and over winter survival (Ward and Stehn, 1989).

Alaska↗

USGS1917

Life zone investigations in Wyoming

Wyoming is among the foremost of our States in its wealth of natural scenery, culminating in the grandeur of Yellowstone National Park, one of the wonders of the world. In addition to this distinction it posseses vast open plains and lofty mountains whence flow the headwaters of mighty river systems emptying far away to the west into the Pacific Ocean, to the southeast into the Gulf of Mexico, and to the southwest into the Gulf of California. The various slope exposures of its mountain ranges, the fertility of its intervening valleys or basins, and the aridity of its desert spaces present a study of geographic and vertical distribution of wild life that is in many particulars unique. The study of geographic and vertical distribution of life with the governing factors and attendant problems is valuable as a matter of scientific research and in the attainment of practical knowledge. The Biological Survey has been making detailed investigations of the transcontinental life belts, or zones, of North America for some years, and this work has been carried on with special reference to their practical value. It has become increasingly evident that life zones furnish a fairly accurate index to average climatic conditions and, therefore, are useful as marking the limits of agricultural possibilities, so far as these are dependent upon climate. The knowledge thus gained has been published and made available as the investigations have progressed and the life zones have been mapped. 1

North American Fauna↗

USGS2003

A genetic study to aid in restoration of murres, guillemots and murrelets to the Gulf of Alaska

Genetic data are needed to aid in restoring several species of seabirds to the Gulf of Alaska. We analyzed sequence variation in mitochondrial DNA, microsatellite DNA and nuclear introns in samples of commom murres ( Uria aalge ), pigeon guillemots ( Cepphus columba ) and marbled murrelets ( Brachyramphus marmoratus ) from throughout the North Pacific. Data were analyzed using traditional approaches, nested clade analyses and assignment tests. No cryptic species were found, and there was no strong evidence for inbreeding, low genetic variation, or souce or sink regions in any them. Pacific common murres constitute a single genetic management unit (MU), but hybridization occurs between common and thick-billed murres ( U. lomvia ). In contrast, gene flow in pigeon guillemots is very restricted and population genetic structure is very strong; guillemots from the spill area are part of a MU that extends from the Alaska Peninsula to somewhere between Prince William Sound and Vancouver Island. Marbled murrelets in the spill area are part of a MU that extends from the Alaska Peninsula to at least British Columbia; tree- and ground-nesting murrelets are not genetically differentiated. Little if any hybridization occurs between marbled and Kittlitz's murrelets.

Alaska↗

USGS2019

A spatial model of streaked horned lark breeding habitat in the Columbia River, USA

The streaked horned lark (hereafter “lark”; Eremophila alpestris strigata ) is a federally listed bird subspecies of the Pacific Northwest that occupies open landscapes with short vegetation and abundant bare ground. Across its breeding range, which has contracted dramatically, the lark relies primarily on human-modified habitats maintained in early successional states (e.g., agricultural fields, airfields, deposition islands). The focus of our study is the lower Columbia River where larks primarily occupy deposition islands created as a byproduct of shipping channel deepening (dredging) projects. The U.S. Army Corps of Engineers has proactively adopted a shifting-habitat-mosaic management approach when placing dredge (sand) materials to maintain lark habitat throughout the project area. To help achieve their goal, we created a geospatial tool capable of quantifying and tracking habitat suitability for larks throughout the project area with satellite imagery. We created spatial models of lark breeding habitat by incorporating lark survey data, Sentinel-2 satellite imagery, dredge-deposition maps, and surface-elevation models. We built candidate predictive models of lark breeding habitat after combining survey data (years 2016 and 2017), predictor variables, and logistic regression. In addition, we created a novel seral-stage predictor variable to identify young, mature, old, and unsuitable locations; critical information for lark conservation planning and dredge-disposal operational planning. We challenged probability models the year they were constructed (2016) and the following year (2017) with set-aside survey data. The best model contained terrain ruggedness, deposition age, vegetation greenness (e.g., lushness and density of vegetation) inside a 10-m cell, and heterogeneity in greenness within a 100-m radius. Verification accuracy ranged from 75 to 83% depending on the model tested and year. Importantly, the seral-stage variable allowed us to quantify and locate early, optimal, and late habitats. Model results will facilitate conservation planning decisions by informing real-time management decisions. Furthermore, they provide a foundation for application in other human-modified habitats across the species’ range.

Oregon↗

USGS2005

Morphology and aging precision of statoliths from larvae of Columbia river basin lampreys

The general morphology and precision associated with age determination of statoliths from larval Pacific lampreys Lampetra tridentata and western brook lampreys L. richardsoni found within the Columbia River basin were examined. Significant positive correlations were observed between the size of left and right statoliths from individuals. Principal components analysis indicated an allometric relationship between lamprey length and statolith size as well as a potential species grouping based on these measurements. Discriminant analysis was able to correctly classify more than 94% of Pacific lampreys and 92% of western brook lampreys based on lamprey length and statolith size, and Pacific lamprey statoliths tended to be larger than western brook lamprey statoliths for lampreys of a given size. Reader bias in age estimates of statoliths was greater for older lampreys. Multiple independent age readings of both statoliths from individual lampreys indicated that the overall average percent error was 16.7% for Pacific lampreys and 33.0% for western brook lampreys. Within-individual average percent error ranged from 5.1% to 20.1% among species and readers. Within-reader average percent error ranged from 6.4% to 17.8% among species and readers. The average percent error observed in this study was greater than that observed in studies of other species of lampreys; however, statoliths that were ambiguous or difficult to read were not excluded from this study. In general, the modal separation of age-groups observed in length-frequency distributions for lampreys is poor, as seen in this study; therefore, statolith-based ages may verify or provide better estimates of population age structure. These data demonstrate that estimates of precision are necessary before management actions founded on statolith-based age structure determination are implemented. ?? Copyright by the American Fisheries Society 2005.

Oregon↗

USGS2010

U.S. Geological Survey (USGS), Western Region: Coastal ecosystem responses to influences from land and sea, Coastal and Ocean Science

Sea otters and the nearshore ecosystems they inhabit-from highly urbanized California to relatively pristine Alaska-are the focus of a new multidisciplinary study by scientists with the U.S. Geological Survey (USGS) and a suite of international, academic and government collaborators. The Coastal Ecosystem Responses to Influences from Land and Sea project will investigate the many interacting variables that influence the health of coastal ecosystems along the Northeast Pacific shore. These ecosystems face unprecedented challenges, with threats arising from the adjacent oceans and lands. From the ocean, challenges include acidification, sea level rise, and warming. From the land, challenges include elevated biological, geological and chemical pollutants associated with burgeoning human populations along coastlines. The implications of these challenges for biological systems are only beginning to be explored. Comparing sea otter population status indicators from around the northeastern Pacific Rim, will begin the process of defining factors of coastal ecosystem health in this broad region.

Fact Sheet↗

USGS2025

Effects of beaver dams and ponds on water quality in urban streams of the Tualatin River Basin, northwestern Oregon

Significant Findings American beavers ( Castor canadensis ) are native to the Pacific Northwest, and their populations have increased in many locations after being nearly removed by historical trapping. Beaver dams have well-documented effects on water quality in forested streams, but their effects on water quality in urban streams have not been well characterized. The study documented the water-quality effects of beaver dams and beaver activity in selected urban streams of the Tualatin River Basin in northwestern Oregon. Variations in water quality upstream, downstream, and within ponded areas behind beaver dams were quantified with continuous measurements of water temperature, specific conductance, dissolved oxygen, and pH from May 2016 to November 2017 in two intensively monitored reaches of urban streams (Fanno and Bronson Creeks). Five other urban stream reaches were monitored upstream and downstream from beaver ponds using water-temperature sensors to document water-temperature changes in additional beaver-affected reaches. Spatial water-quality variations within a beaver pond along Fanno Creek were characterized in more detail on four hot summer afternoons with numerous measurements of temperature and dissolved oxygen. Results from the study were used to document and derive insights from measured patterns in the water-quality data, such as the following: Shallow and unshaded ponds created by beaver dams (such as at Fanno Creek) capture more solar radiation than channelized and shaded stream reaches, resulting in substantially warmer water temperatures during summer. A large beaver pond along Fanno Creek had variable water depths and riparian shade, resulting in a wide range of water-temperature and dissolved-oxygen conditions. Some conditions measured during summer were stressful for sensitive aquatic species, with temperatures higher than 18 degrees Celsius (°C) and (or) dissolved-oxygen concentrations less than 2 milligrams per liter (mg/L). Although water flowing out of beaver-affected reaches was warmer than water entering the reaches, water tended to cool downstream when streams returned to a more-shaded, confined channel (such as at Fanno Creek) or received subsurface inputs and exchange (such as at Bronson Creek). The magnitude of water-temperature increases in beaver ponds depended on site characteristics, such as the surface area and depth of the ponds, the extent of riparian shade, and the potential for subsurface exchange. Beaver dams caused Fanno Creek to overflow its banks, resulting in a wide and shallow floodplain pond that had little riparian shade in most places. In contrast, Bronson Creek remained in its stream channel behind the beaver dams, was often deeper and more shaded, and had more subsurface water exchange than the Fanno Creek reach. Despite the longer reach length, these differences caused the Bronson Creek reach to warm less than the Fanno Creek reach. Beaver dams trapped sediment and organic matter, and ponding increased the time available for organic matter to decompose in the trapped sediments, thus consuming dissolved oxygen. The construction of a beaver dam in the monitored reach of Bronson Creek during the study caused an increase in oxygen demands and a rapid decrease in dissolved-oxygen concentrations. Dissolved-oxygen concentrations in monitored study reaches were affected by primary production (algal photosynthesis) and respiration, and hypoxic (low to zero dissolved oxygen) conditions were measured in the two intensively monitored reaches for multiple weeks during summer. Two single-station stream metabolism models were used to calculate net ecosystem production in the two intensively monitored urban stream reaches. Results indicated that the reaches were heterotrophic, with respiration demands consuming more oxygen than what was produced through photosynthesis. Beaver ponds at all sites had a measurable effect on water quality, causing wider ranges in temperature and dissolved-oxygen conditions than would have occurred without ponding. That wider range (both spatially and temporally) might support a variety of aquatic organisms, but also is likely to increase the frequency of water-quality standard violations in those beaver-affected reaches. Any water-quality effects or standard violations associated with beaver dams and ponds, however, may be localized or transitory along the stream network. Restored stream reaches can attract beavers. Considering the potential for beaver colonization when designing habitat restoration plans will require evaluation of the potential water-quality changes associated with beaver dams and ponds alongside other desired physical changes.

Oregon↗

USGS2020

Climate’s cascading effects on disease, predation, and hatching success in Anaxyrus canorus, the threatened Yosemite toad

The U.S. Fish and Wildlife Service listed Anaxyrus canorus , the Yosemite toad, as federally threatened in 2014 based upon reported population declines and vulnerability to global-change factors. A. canorus lives only in California’s central Sierra Nevada at medium to sub-alpine elevations. Lands throughout its range are protected from development, but climate and other global-change factors potentially can limit populations. A. canorus reproduces in ultra-shallow wetlands that typically hydrate seasonally via melting of the winter snowpack. Lesser snowpacks in drier years can render wetland water volumes and hydroperiods insufficient to allow for successful breeding and reproduction. Additionally, breeding and embryogenesis occur very soon after wetlands thaw when overnight temperatures can be below freezing. Diseases, such as chytridiomycosis, which recently decimated regional populations of ranid species, also might cause declines of A. canorus populations. However, reported studies focused on whether climate interacts with any pathogens to affect fitness in A. canorus have been scarce. We investigated effects of these factors on A. canorus near Tioga Pass from 1996 to 2001. We found breeding subpopulations were distributed widely but inconsistently among potentially suitable wetlands and frequently consisted of small numbers of adults. We occasionally observed small but not alarming numbers of dead adults at breeding sites. In contrast, embryo mortality often was notably high, with the majority of embryos dead in some egg masses while mortality among coincidental Pseudacris regilla (Pacific treefrog) embryos in deeper water was lower. After sampling and experimentation, we concluded that freezing killed A. canorus embryos, especially near the tops of egg masses, which enabled Saprolegnia diclina (a water mold [Oomycota]) to infect and then spread through egg masses and kill more embryos, often in conjunction with predatory flatworms ( Turbellaria spp.). We also concluded exposure to ultraviolet-B radiation did not play a role. Based upon our assessments of daily minimum temperatures recorded around snow-off during years before and after our field study, the freezing potential we observed at field sites during embryogenesis might have been commonplace beyond the years of our field study. However, interactions among snow quantity, the timing of snow-off, and coincidental air temperatures that determine such freezing potential make projections of future conditions highly uncertain, despite overall warming trends. Our results describe important effects from ongoing threats to the fitness and abundance of A. canorus via reduced reproduction success and demonstrate how climate conditions can exacerbate effects from pathogens to threaten the persistence of amphibian populations.

California↗

USGS2015

Proceedings of the 9th U.S.-Japan natural resources panel for earthquake research

Introduction The UJNR Panel on Earthquake Research promotes advanced study toward a more fundamental understanding of the earthquake process and hazard estimation. The Ninth Joint meeting was extremely beneficial in furthering cooperation and deepening understanding of problems common to both the U.S. and Japan. The meeting included productive exchanges of information on approaches to systematic observation and modeling of earthquake processes. Regarding the earthquake and tsunami of March 2011 off the Pacific coast of Tohoku, the Panel recognizes that further efforts are necessary to achieve our common goal of reducing earthquake risk through close collaboration and focused discussions at the 10th UJNR meeting. We look forward to continued cooperation on issues involving the densification of observation networks and the open exchange of data among scientific communities. We recognize the importance of making information publicly available in a timely manner. We also recognize the importance of information exchange on research policy and strategies, including the frameworks of research organizations. Areas of Cooperation –Specific areas of earthquake research where cooperative research between the U.S. and Japan may lead to significant advancement include, but are not limited to: –Probabilistic earthquake and tsunami hazard estimation, including extraordinarily large earthquakes, both in our respective countries and worldwide, incorporating knowledge of current and past behavior, and physics based computational models; –Real-time information from seismic, geodetic and strain measurements, including borehole strainmeters and seafloor observations using offshore cabled networks; –Technologies for measuring crustal deformation; –Early warning technologies for earthquakes and tsunamis; Studies of recurrence of large and extraordinary large earthquakes using paleoseismic, paleotsunami, geodetic and seismic methods; –Laboratory, theoretical and in situ studies of fault-zone processes; –Studies of episodic tremor and slow slip events using seismic, geodetic, and borehole strain measurements, and simulation techniques; –Systematic studies of earthquake predictability through rigorously evaluated scientific prediction experiments and robust databases; –Studies of near-source ground motions, geological effects and the response of engineered structures. The Panel strongly urges that the appropriate agencies in the U.S. and Japan that are represented on this panel work together with the academic sector to support and coordinate scientific work in these areas of cooperation. The Panel recognizes the importance of promoting the exchange of scientific personnel, exchange of data, and fundamental studies to advance progress in earthquake research. The U.S. and Japan should promote these exchanges throughout the world. The Panel endorses continuation of these activities.

Open-File Report↗

USGS2018

Development and characterization of two cell lines from gills of Atlantic salmon

Gill disease in Atlantic salmon, Salmo salar L., causes big losses in the salmon farming industry. Until now, tools to cultivate microorganisms causing gill disease and models to study the gill responses have been lacking. Here we describe the establishment and characterization of two cell lines from the gills of Atlantic salmon. Atlantic salmon gill cell ASG-10 consisted of cells staining for cytokeratin and e-cadherin and with desmosomes as seen by transmission electron microscopy suggesting the cells to be of epithelial origin. These structures were not seen in ASG-13. The cell lines have been maintained for almost 30 passages and both cell lines are fully susceptible to infection by infectious hematopoietic necrosis virus (IHNV), viral hemorrhagic septicemia virus (VHSV), infectious pancreatic necrosis virus (IPNV), Atlantic salmon reovirus TS (TSRV) and Pacific salmon paramyxovirus (PSPV). While infectious salmon anemia virus (ISAV) did not cause visible CPE, immunofluorescent staining revealed a sub-fraction of cells in both the ASG-10 and ASG-13 lines may be permissive to infection. ASG-10 is able to proliferate and migrate to close scratches in the monolayer within seven days in vitro contrary to ASG-13, which does not appear to do have the same proliferative and migratory ability. These cell lines will be useful in studies of gill diseases in Atlantic salmon and may represent an important contribution for alternatives to experimental animals and studies of epithelial–mesenchymal cell biology.

PLoS ONE↗

USGS2014

The response of stream periphyton to Pacific salmon: using a model to understand the role of environmental context

1. In stream ecosystems, Pacific salmon deliver subsidies of marine-derived nutrients and disturb the stream bed during spawning. The net effect of this nutrient subsidy and physical disturbance on biological communities can be hard to predict and is likely to be mediated by environmental conditions. For periphyton, empirical studies have revealed that the magnitude and direction of the response to salmon varies from one location to the next. Salmon appear to increase periphyton biomass and/or production in some contexts (a positive response), but decrease them in others (a negative response). 2. To reconcile these seemingly conflicting results, we constructed a system dynamics model that links periphyton biomass and production to salmon spawning. We used this model to explore how environmental conditions influence the periphyton response to salmon. 3. Our simulations suggest that the periphyton response to salmon is strongly mediated by both background nutrient concentrations and the proportion of the stream bed suitable for spawning. Positive periphyton responses occurred when both background nutrient concentrations were low (nutrient limiting conditions) and when little of the stream bed was suitable for spawning (because the substratum is too coarse). In contrast, negative responses occurred when nutrient concentrations were higher or a larger proportion of the bed was suitable for spawning. 4. Although periphyton biomass generally remained above or below background conditions for several months following spawning, periphyton production returned quickly to background values shortly afterwards. As a result, based upon our simulations, salmon did not greatly increase or decrease overall annual periphyton production. This suggests that any increase in production by fish or invertebrates in response to returning salmon is more likely to occur via direct consumption of salmon carcasses and/or eggs, rather than the indirect effects of greater periphyton production. 5. Overall, our simulations suggest that environmental factors need to be taken into account when considering the effects of spawning salmon on aquatic ecosystems. Our model offers researchers a framework for testing periphyton response to salmon across a range of conditions, which can be used to generate hypotheses, plan field experiments and guide data collection.

Freshwater Biology↗

USGS2019

The glycoprotein, non-virion protein, and polymerase of viral hemorrhagic septicemia virus are not determinants of host-specific virulence in rainbow trout

Viral hemorrhagic septicemia virus (VHSV), a fish rhabdovirus belonging to the Novirhabdovirus genus, causes severe disease and mortality in many marine and freshwater fish species worldwide. VHSV isolates are classified into four genotypes and each group is endemic to specific geographic regions in the north Atlantic and Pacific Oceans. Most viruses in the European VHSV genotype Ia are highly virulent for rainbow trout (Oncorhynchus mykiss), whereas, VHSV genotype IVb viruses from the Great Lakes region in the United States, which caused high mortality in wild freshwater fish species, are avirulent for trout. This study describes molecular characterization and construction of an infectious clone of the virulent VHSV-Ia strain DK-3592B from Denmark, and application of the clone in reverse genetics to investigate the role of selected VHSV protein(s) in host-specific virulence in rainbow trout (referred to as trout-virulence).

Virology Journal↗

USGS1978

Manganese nodule resources in the northeastern equatorial Pacific

Recent publication of maps at a scale of 1:1,000,000 of the northeastern equatorial Pacific region showing publicly available information on the nickel-plus-copper content of manganese nodules has made it possible to delineate the limits of the prime area between the Clarion and Clipperton fracture zones which has been the focus of several recent scientific and commercial studies. The area, defined as that in which the nodules contain more than 1.8 percent nickel plus copper, is about 2.5 million square kilometers in size, and about half of it is assumed to contain nodules in concentrations greater than 5 kg/m 2 and averaging 11.9 kg/m 2 . Assuming that 20 percent of the nodules in this area of 1.25 million square kilometers would be recoverable, its potentially recoverable resources are about 2.1 billion dry metric tons of nodules averaging about 25 percent Mn, 1.3 percent Ni, 1 percent Cu, 0.22 percent Co, and 0.05 percent Mo--enough to support about 27 mining operations each producing an average of 75 million metric tons of nodules over their lifetimes. Estimates based on other plausible assumptions would be higher or lower, but of the same order of magnitude. Thus it seems probable that the magnitude of the potentially recoverable nodule resources of the Clarion-Clipperton prime area--the most promising now known--is at most in the range of several tens of the average-size operations postulated.

Open-File Report↗

USGS1989

Regional crustal structure and tectonics of the Pacific Coastal States: California, Oregon, and Washington

The Pacific Coastal States form a complex geologic environment in which the crust and lithosphere have been continuously reworked. We divide the region tectonically into the southern transform regime of the San Andreas fault and the northern subduction regime, and summarize the geophysical framework with contour maps of crustal thickness, lithospheric and seismicity cross sections, and results from site-specific geophysical studies. The uniformity of crustal thickness (30 ± 2 km) in southern California is remarkable, and appears to be primarily the result of crustal extension in the Mojave Desert and ductile shear of the lower crust along the plate transform boundary. Southern California seismicity defines a broad zone of deformation that extends from the Borderland to the Mojave Desert (about 300 km). The geophysical framework of central and northern California records magmatism and accretion associated with the Mesozoic and Cenozoic subduction, late Cenozoic transform faulting, and in the Basin and Range to the east, extension. The crust thickens from about 20 km at the coast to as much as 55 km in the Sierra Nevada, and thins to about 30 km in the Basin and Range. Cross sections of the crust show that seismic velocities and densities vary significantly over short distances perpendicular to the coast, reflecting processes that include the accretion of oceanic sediments and igneous crust, and significant lateral motion of crustal blocks. Maximum hypocentral depths in central California become deeper as the crust thickens to the west, but seismicity is low beneath the Great Valley and Sierra Nevada, which together appear to form a relatively undeforming block. The lower crust of the Pacific Coastal States has a high average seismic velocity (6.7 km/sec or greater), which probably is the product of tectonic underplating of oceanic crust and/or magmatic underplating by a basaltic melt.

California, Oregon, Washington↗