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At least 613 records · Page 34Linked to original sources

Evidence from tooth surface morphology for a posterior maxillary origin of the proteroglyph fang

Although the front-fanged venom delivery system of the Elapidae is believed to be derived from an aglyphous or opisthoglyphous colubroid ancestor, opinion is divided as to the end of the maxilla on which the proteroglyph fang originated. This study was undertaken to determine whether the evolutionary precursor of the proteroglyph fang was (a) a grooved posterior fang which migrated anteriorly, or (b) an enlarged anterior tooth which secondarily developed a groove for the conduction of venom. The surface morphology of the maxillary teeth of colubrid genera was examined using scanning electron microscopy. Ridges present on the lingual and labial surfaces of anterior maxillary teeth and on the anterior and posterior surfaces of posterior maxillary teeth were identified as morphological markers of potential value in distinguishing the anterior and posterior maxillary teeth of colubrid snakes, and in determining the origin of the proteroglyph fang. Patterns of ridges on the surfaces of elapid fangs examined were found to be consistent with the hypothesis that the evolutionary precursor of the proteroglyph fang was an opisthoglyph fang which migrated anteriorly.

Amphibia-Reptilia↗

Demonstration of a novel quantitative microscopy technique for automated characterization of in situ particulate matter in coal miners with progressive massive fibrosis

Rationale: Increasing exposure to respirable crystalline silica (RCS) linked to changes in mining production processes has been implicated in the resurgence of severe lung disease in U.S. coal miners. Lung mineralogy can provide insight into particle pathogenesis. However, standard approaches to characterizing in situ particulate matter (PM) by pulmonary pathologists have poor inter-rater comparability, and consensus agreement is time consuming. Scanning electron microscopy/energy-dispersive spectroscopy (SEM/EDX) is technically complex and labor intensive. We developed a method for quantitative in situ PM characterization using conventional polarized light microscopy (PLM) and explored PM features in lung tissue of coal miners with progressive massive fibrosis (PMF). Methods: With institutional review board approval, PLM images were obtained from 30 miners with PMF, classified by pathologists consensus based on PM profusion; 10 from each profusion group (mild/moderate/severe) were selected. Automated PM counting and characterization (including dimensions and grayscale intensity of PM > 0.3 m diameter) was performed on image samples using PLM with modified cell-counting software (BZ-X800 light microscope, Keyence Corporation, Osaka, Japan) (Figure 1). Quantitative PM density loge(PM count)/mm3 tissue was calculated for each sample and compared to pathologist PM profusion groups. PMF lesion type using consensus pathologist classification (13 coal-type, 9 mixed-type, and 8 silicotic-type) was compared to automated PM birefringence level (% particles with mean grayscale intensity <65, range 0-255). RCS particles are expected to be weakly birefringent (lower intensity) relative to other common minerals (e.g., silicates) contained in coal mine dust. PM features were analyzed in R 4.0.3 using one-way ANOVA for between-group comparisons. Results: Measured PM log-density increased significantly with higher qualitative profusion group (mild=10.480.98/mm3, moderate=11.460.81/mm3, severe=12.520.86/mm3, p<0.0001). Prevalence of weakly birefringent particles was significantly higher among silicotic-type PMF samples (31.57.9%) compared to either coal-type (21.510.1%, p=0.022) or mixed-type lesions (21.510.5%, p=0.025). Conclusion: This pilot study demonstrates the feasibility of a novel quantitative microscopy technique for counting and characterizing in situ lung PM in coal miners with PMF. Quantitative PM burden was comparable to pulmonary pathologists consensus profusion classification, but this method was substantially less time consuming and labor intensive and provided additional information about relevant PM features. The higher prevalence of weakly birefringent particles seen in silicotic-type PMF lesions may help inform mineralogic pathogenesis of RCS. Future efforts will expand the number of PMF cases analyzed, further validate our mineralogic findings using data from SEM/EDX and lung tissue digestate methods, and compare findings in historical versus contemporary coal miners with PMF.

Conference Paper↗

Three new Psammothidium species from lakes of Olympic and Cascade Mountains in Washington State, USA

Populations of several Psammothidium species were found in core sediments from nine remote, high elevation, ultraoligotrophic and oligotrophic, Olympic and Cascade Mountain lakes. Three of these species, P. lacustre, P. alpinum , and P. nivale , are described here as new. The morphology of the silica frustules of these species was documented using light and scanning electron microscopy. We discuss the similarities and differences with previously described Psammothidium species.

Washington↗

Numerical simulations and observations of surface wave fields under an extreme tropical cyclone

The performance of the wave model WAVEWATCH III under a very strong, category 5, tropical cyclone wind forcing is investigated with different drag coefficient parameterizations and ocean current inputs. The model results are compared with field observations of the surface wave spectra from an airborne scanning radar altimeter, National Data Buoy Center (NDBC) time series, and satellite altimeter measurements in Hurricane Ivan (2004). The results suggest that the model with the original drag coefficient parameterization tends to overestimate the significant wave height and the dominant wavelength and produces a wave spectrum with narrower directional spreading. When an improved drag parameterization is introduced and the wave-current interaction is included, the model yields an improved forecast of significant wave height, but underestimates the dominant wavelength. When the hurricane moves over a preexisting mesoscale ocean feature, such as the Loop Current in the Gulf of Mexico or a warm-and cold-core ring, the current associated with the feature can accelerate or decelerate the wave propagation and significantly modulate the wave spectrum. ?? 2009 American Meteorological Society.

Journal of Physical Oceanography↗

Partly cloudy with a chance of migration: Weather, radars, and aeroecology

Aeroecology is an emerging scientific discipline that integrates atmospheric science, Earth science, geography, ecology, computer science, computational biology, and engineering to further the understanding of biological patterns and processes. The unifying concept underlying this new transdisciplinary field of study is a focus on the planetary boundary layer and lower free atmosphere (i.e., the aerosphere), and the diversity of airborne organisms that inhabit and depend on the aerosphere for their existence. Here, we focus on the role of radars and radar networks in aeroecological studies. Radar systems scanning the atmosphere are primarily used to monitor weather conditions and track the location and movements of aircraft. However, radar echoes regularly contain signals from other sources, such as airborne birds, bats, and arthropods. We briefly discuss how radar observations can be and have been used to study a variety of airborne organisms and examine some of the many potential benefits likely to arise from radar aeroecology for meteorological and biological research over a wide range of spatial and temporal scales. Radar systems are becoming increasingly sophisticated with the advent of innovative signal processing and dual-polarimetric capabilities. These capabilities should be better harnessed to promote both meteorological and aeroecological research and to explore the interface between these two broad disciplines. We strongly encourage close collaboration among meteorologists, radar scientists, biologists, and others toward developing radar products that will contribute to a better understanding of airborne fauna.

Bulletin of the American Meteorological Society↗

Extraordinary flood response of a small urban watershed to short-duration convective rainfall

The 9.1 km2 Moores Run watershed in Baltimore, Maryland, experiences floods with unit discharge peaks exceeding 1 m3 s-1 km-2 12 times yr-1, on average. Few, if any, drainage basins in the continental United States have a higher frequency. A thunderstorm system on 13 June 2003 produced the record flood peak (13.2 m3 s-1 km-2) during the 6-yr stream gauging record of Moores Run. In this paper, the hydrometeorology, hydrology, and hydraulics of extreme floods in Moores Run are examined through analyses of the 13 June 2003 storm and flood, as well as other major storm and flood events during the 2000-03 time period. The 13 June 2003 flood, like most floods in Moores Run, was produced by an organized system of thunderstorms. Analyses of the 13 June 2003 storm, which are based on volume scan reflectivity observations from the Sterling, Virginia, WSR-88D radar, are used to characterize the spatial and temporal variability of flash flood producing rainfall. Hydrology of flood response in Moores Run is characterized by highly efficient concentration of runoff through the storm drain network and relatively low runoff ratios. A detailed survey of high-water marks for the 13 June 2003 flood is used, in combination with analyses based on a 2D, depth-averaged open channel flow model (TELEMAC 2D) to examine hydraulics of the 13 June 2003 flood. Hydraulic analyses are used to examine peak discharge estimates for the 13 June flood peak, propagation of flood waves in the Moores Run channel, and 2D flow features associated with channel and floodplain geometry. ?? 2005 American Meteorological Society.

Journal of Hydrometeorology↗

Microbial sulfate reduction and metal attenuation in pH 4 acid mine water

Sediments recovered from the flooded mine workings of the Penn Mine, a Cu-Zn mine abandoned since the early 1960s, were cultured for anaerobic bacteria over a range of pH (4.0 to 7.5). The molecular biology of sediments and cultures was studied to determine whether sulfate-reducing bacteria (SRB) were active in moderately acidic conditions present in the underground mine workings. Here we document multiple, independent analyses and show evidence that sulfate reduction and associated metal attenuation are occurring in the pH-4 mine environment. Water-chemistry analyses of the mine water reveal: (1) preferential complexation and precipitation by H2S of Cu and Cd, relative to Zn; (2) stable isotope ratios of 34S/32S and 18O/16O in dissolved SO4 that are 2-3 ??? heavier in the mine water, relative to those in surface waters; (3) reduction/oxidation conditions and dissolved gas concentrations consistent with conditions to support anaerobic processes such as sulfate reduction. Scanning electron microscope (SEM) analyses of sediment show 1.5-micrometer, spherical ZnS precipitates. Phospholipid fatty acid (PLFA) and denaturing gradient gel electrophoresis (DGGE) analyses of Penn Mine sediment show a high biomass level with a moderately diverse community structure composed primarily of iron- and sulfate-reducing bacteria. Cultures of sediment from the mine produced dissolved sulfide at pH values near 7 and near 4, forming precipitates of either iron sulfide or elemental sulfur. DGGE coupled with sequence and phylogenetic analysis of 16S rDNA gene segments showed populations of Desulfosporosinus and Desulfitobacterium in Penn Mine sediment and laboratory cultures. ?? 2007 Church et al; licensee BioMed Central Ltd.

Geochemical Transactions↗

Can we estimate total magnetization directions from aeromagnetic data using Helbig's integrals?

An algorithm that implements Helbig’s (1963) integrals for estimating the vector components ( m x , m y , m z ) of the magnetic dipole moment from the first order moments of the vector magnetic field components (Δ X , Δ Y , Δ Z ) is tested on real and synthetic data. After a grid of total field aeromagnetic data is converted to vector component grids using Fourier filtering, Helbig’s infinite integrals are evaluated as finite integrals in small moving windows using a quadrature algorithm based on the 2-D trapezoidal rule. Prior to integration, best-fit planar surfaces must be removed from the component data within the data windows in order to make the results independent of the coordinate system origin. Two different approaches are described for interpreting the results of the integration. In the “direct” method, results from pairs of different window sizes are compared to identify grid nodes where the angular difference between solutions is small. These solutions provide valid estimates of total magnetization directions for compact sources such as spheres or dipoles, but not for horizontally elongated or 2-D sources. In the “indirect” method, which is more forgiving of source geometry, results of the quadrature analysis are scanned for solutions that are parallel to a specified total magnetization direction.

Earth, Planets and Space↗

Estimation of pseudo-2D shear-velocity section by inversion of high frequency surface waves

A scheme to generate pseudo-2D shear-velocity sections with high horizontal resolution and low field cost by inversion of high frequency surface waves is presented. It contains six steps. The key step is the joint method of crossed correlation and phase shift scanning. This joint method chooses only two traces to generate image of dispersion curve. For Rayleigh-wave dispersion is most important for estimation of near-surface shear-wave velocity, it can effectively obtain reliable images of dispersion curves with a couple of traces. The result of a synthetic example shows the feasibility of this scheme. ?? 2005 Society of Exploration Geophysicists.

SEG Technical Program Expanded Abstracts↗

An effective noise-suppression technique for surface microseismic data

The presence of strong surface-wave noise in surface microseismic data may decrease the utility of these data. We implement a technique, based on the distinct characteristics that microseismic signal and noise show in the τ‐p domain, to suppress surface-wave noise in microseismic data. Because most microseismic source mechanisms are deviatoric, preprocessing is necessary to correct for the nonuniform radiation pattern prior to transforming the data to the τ‐p domain. We employ a scanning approach, similar to semblance analysis, to test all possible double-couple orientations to determine an estimated orientation that best accounts for the polarity pattern of any microseismic events. We then correct the polarity of the data traces according to this pattern, prior to conducting signal-noise separation in the τ‐p domain. We apply our noise-suppression technique to two surface passive-seismic data sets from different acquisition surveys. The first data set includes a synthetic microseismic event added to field passive noise recorded by an areal receiver array distributed over a Barnett Formation reservoir undergoing hydraulic fracturing. The second data set is field microseismic data recorded by receivers arranged in a star-shaped array, over a Bakken Shale reservoir during a hydraulic-fracturing process. Our technique significantly improves the signal-to-noise ratios of the microseismic events and preserves the waveforms at the individual traces. We illustrate that the enhancement in signal-to-noise ratio also results in improved imaging of the microseismic hypocenter.

Geophysics↗

Controls on pore types and pore-size distribution in the Upper Triassic Yanchang Formation, Ordos Basin, China: Implications for pore-evolution models of lacustrine mudrocks

Our main objectives are to (1) learn if pore-evolution models developed from marine mudrocks can be directly applied to lacustrine mudrocks, (2) investigate what controls the different pore types and sizes of Chang 7 organic matter (OM)-rich argillaceous mudstones of the Upper Triassic Yanchang Formation, and (3) describe the texture, fabric, mineralogy, and thermal maturity variation in the Chang 7 mudstones. Lacustrine mudstones from nine cored wells along a depositional dip in the southeastern Ordos Basin, China, were investigated. Helium porosimetry, nitrogen adsorption, and field-emission scanning electron microscopy of Ar-ion milled samples were applied. Measured average total porosity of samples from a proximal to distal transect ( &#x3D5; = 5.0 % "> ϕ = 5.0 % ) is higher than those from the two adjacent cored wells ( &#x3D5; = 2.3 % "> ϕ = 2.3 % ). This difference in porosity partly caused by differences in the clay mineral content implies that in the fluvial-deltaic-lacustrine depositional environment, reservoir quality can vary significantly in a short distance. Owing to the uneven distribution of the sample set from proximal to distal area, we mainly evaluate variations in the proximal setting. Results from nitrogen-gas adsorption experiments show that there are four distinct patterns of pore-size distribution within the Chang 7 member of the Yanchang Formation with no particular correlation with mineralogical composition and thermal maturity. The pore network within Chang 7 mudstones is dominated by OM-hosted pores, with a lesser abundance of interparticle and intraparticle pores. The size distribution of mineral-hosted pores within these mudstones is found to be closely related to the rock texture (sorting and grain size) and fabric. Mudstones with well-sorted grains and a higher percentage of coarser grains have more abundant mineral pores. The sizes of OM-hosted pores in these compaction-dominated lacustrine mudstones were one to two orders of magnitude smaller than those in the marine mudstones that display abundant early cementation.

Ordos basin↗

Estimating pore and cement volumes in thin section

Point count estimates of pore, grain and cement volumes from thin sections are inaccurate, often by more than 100 percent, even though they may be surprisingly precise (reproducibility + or - 3 percent). Errors are produced by: 1) inclusion of submicroscopic pore space within solid volume and 2) edge effects caused by grain curvature within a 30-micron thick thin section. Submicroscopic porosity may be measured by various physical tests or may be visually estimated from scanning electron micrographs. Edge error takes the form of an envelope around grains and increases with decreasing grain size and sorting, increasing grain irregularity and tighter grain packing. Cements are greatly involved in edge error because of their position at grain peripheries and their generally small grain size. Edge error is minimized by methods which reduce the thickness of the sample viewed during point counting. Methods which effectively reduce thickness include use of ultra-thin thin sections or acetate peels, point counting in reflected light, or carefully focusing and counting on the upper surface of the thin section.

Journal of Sedimentary Petrology↗

Reservoir properties of submarine- fan facies: Great Valley sequence, California

Submarine-fan sandstones of the Great Valley sequence west of the Sacramento Valley, California, have low porosities and permeabilities (64 samples averaged 10.1% porosity and 0.87 millidarcies permeability). However, petrography and scanning electron microscope studies indicate that most sands in almost all submarine fan environments are originally porous and permeable. Thin turbidite sandstones deposited in areas dominated by shale in outer-fan, basin-plain, and overbank environments are cemented mainly by calcite; shale dewatering is inferred to contribute to rapid cementation early in the burial process. Sands deposited in inner- and middle-fan channels within interchannel and fan-fringe environments that contain only thin shale beds have small percentages of intergranular matrix or cement. The original porosity is substantially reduced mechanically at shallow depths and by pressure solution at deeper levels. Permeability decreases systematically with increasing age of the rocks, presumably as a result of increasing burial depths. Computer-run stepwise regression analyses show that the porosity is inversely related to the percentage of calcite cement. Such parameters as the contents of quartz, feldspar, and unstable rock fragments have no correlative effect on either porosity or permeability. The results reported here indicate original porosity and permeability can be high in deep-water submarine fans and that fan environments dominated by sand (with high sand/shale ratios) are more likely to retain higher porosity and permeability to greater depths than sand interbedded with thick shale sequences.

Journal of Sedimentary Petrology↗

Rippled scour depressions on the inner continental shelf off central California

Side-scan sonar records taken during the recent Coastal Ocean Dynamics Experiment (CODE) show elongate, shore-normal rippled depressions of low relief on the inner continental shelf off central California between Bodega Bay and Point Arena. These features extend up to 2 km from the coast into water depths of up to 65 m. The proposed mechanism for their generation is storm-generated bottom currents associated with coastal downwelling during the late fall and winter which scour the surficial fine-sand sediment and expose the coarser-sand substrate in the depressions. The zones of most intense erosion and the irregular spacing of the features may be controlled by submerged rock ledges and other prominent coastal features. The large straight-crested ripples within the depressions (heights to 40 cm; wavelengths to 1.7 m) are probably formed by large-amplitude, long-period surface waves generated by winter storms.

California↗

Fabric and its relation to sedimentologic and physical properties of near-surface sediment, Shelikof Strait and Alsek prodelta, Alaska

To investigate the possible relation between the fabric (microstructural arrangement of particles) of a fine-grained sedimentary deposit and the depositional and environmental processes of that deposit, the fabric of sediment samples from the sea floor of two different depositional settings, Shelikof Strait and the Alsek prodelta, Alaska, were studied by using scanning electron microscopy (SEM). Sediment of both areas is texturally similar, consisting of a muddy sand that grades to a mud with increasing water depth. Mineralogically, both areas are characterized by a clay-size fraction dominated by illite, chlorite, and rock flour. The dominant fabric of undisturbed sediment from both study areas consists of a sand- and coarse-silt-size agranular fraction surrounded by an open matrix of clay- and fine-silt-size platelets arranged in a combination of randomly oriented flocs and many single grain contacts. The similarity of the fabric of sediment from the two study areas suggests that the fabric is not controlled by the different depositional settings but rather by the dominant clay mineralogy and sediment texture. The most noticeable alteration of the original fabric of Shelikof Strait and Alsek prodelta sediment occurs as a result of high levels of consolidation and the shearing process.

Journal of Sedimentary Petrology↗

Mineralogy and petrology of the Cretaceous- Tertiary boundary clay bed and adjacent clay-rich rocks, Raton Basin, New Mexico and Colorado.

The Cretaceous-Tertiary (K-T) boundary is preserved in a sequence of coal-bearing, fluvial rocks in the lower part of the Raton Formation (Late Cretaceous and Paleocene) at several sites in the east-central part of the Raton Basin. The K-T boundary occurs at the top of a kaolinitic claystone layer, commonly referred to as the "boundary clay layer," in an interval of coal and carbonaceous shale. The boundary is defined by the disappearance of certain fossil-pollen taxa. The boundary clay layer also contains shocked quartz grains and abundance anomalies of iridium, chromium, and other elements. Each of these characteristics support the hypothesis of an asteroid impact at the end of the Cretaceous. Small goyazite spheres were also found in the boundary clay bed; however, their origin is uncertain. X-ray powder diffraction (XRD), scanning electron microscopy (SEM), and thin-section petrography have shown that the boundary clay bed exhibits unique mineralogic and petrologic characteristics not possessed by other clay-rich beds in coal-bearing rocks of the Raton Basin. The boundary clay bed is composed primarily of well-crystallized kaolinite but also contains subordinate, randomly interstratified, mixed-layer illite/smectite, both of which appear to have been formed by the alteration of vitreous material in a coal-swamp environment. The bulk mineralogy of the boundary clay bed is similar to that of other kaolinite-rich clay beds (tonsteins) that altered in coal swamps from airfall volcanic ash. The alteration process and diagenetic products of the host material in the boundary clay bed, however, differed from those of the tonsteins, resulting in a unique petrographic fabric. The boundary clay bed is characterized by an overall imbricate fabric that may reflect an original vitreous material that included shards, bubbles, and spheres. The original fallout material of the boundary clay bed first altered to "cabbage-like" microspherules, indicating a halloysite or allophane precursor, and then to well-crystallized kaolinite; the well-crystallized kaolinite is the diagenetic stable phase for these rocks at their maximum burial conditions. In comparison, the vitreous components of the tonsteins were altered directly to coarse vermicular and platey kaolinite. Alteration of the original fallout material in the boundary bed was probably rapid, leading to hydrated, disordered, fine-grained clay minerals that formed into curled spherical or tubular shapes. The factors that produced these unique fabrics in the boundary clay bed existed at all K-T sites in the Raton Basin and were much different from those that formed the coarse platey and vermicular fabrics of ordinary tonsteins. The distinctive character of the boundary clay may be due to the unique nature and chemistry of the fallout material and (or) physical or chemical conditions existing shortly after its deposition.

Journal of Sedimentary Petrology↗

Surface area of vermiculite with nitrogen and carbon dioxide as adsorbates

Surface-area studies were made on several homoionic vermiculites with both nitrogen and carbon dioxide as adsorbates. These studies show that only very slight penetration occurs between individual vermiculite platelets. This is in contrast to an earlier investigation of montmorillonite where it was found that the degree of penetration between layers is quite high, particularly for carbon dioxide, and is governed by the size and charge of the interlayer cation. The inability of these adsorbates to penetrate substantially between vermiculite platelets is due primarily to this mineral's high surface-charge density. The extent of penetration of nitrogen and carbon dioxide at the edges of vermiculite platelets, though slight, is influenced by the coordinated water retained within the sample at a given degassing temperature. Forces between layers are weakened with increasing water content, which permits slightly greater penetration by adsorbate gases. Thus, the surface area of vermiculite, as determined by gas adsorption, is larger than the calculated external surface area based upon particle size and shape considerations. In addition, "extra" surface is provided by the lifting and scrolling of terminal platelets. These morphological features are shown in scanning electron micrographs of a naturally occuring vermiculite.

Clays and Clay Minerals↗

Interlamellar adsorption of carbon dioxide by smectites

The adsorption of CO 2 at low temperature (∼ −70°C) on thin films of homoionic smectites was studied by X-ray diffraction and by i.r. absorption. An increase in the d 001 spacings of these clay films upon adsorption of CO 2 was observed. In addition, a dichroic effect was readily discernible by comparing the i.r. spectra at two different orientations of the smectite films; i.e. with the film normal and tilted 35° with respect to the i.r. beam. The CO 2 stretching vibration at 2350 cm −1 was used for the i.r. study. These observations conclusively show that CO 2 intercalates the smectite structure rather than being adsorbed only in pores between clay tactoids—the limiting process proposed by other investigators. Adsorption isotherm data from earlier surface area studies are re-examined here through application of the Dubinin equation. Again, intercalation is demonstrated by convergence of the plotted experimental data for smectites containing large monovalent interlayer cations toward a pore volume that is near the calculated theoretical value for a monolayer of intercalated CO 2 . Scanning electron photomicrographs of Li- and Cs- smectites provide additional evidence that aggregation differences are not responsible for the large observed difference in BET surface areas obtained for these smectites with CO 2 as the adsorbate. At low magnification, visual differences in macro-aggregates are apparent, but at high magnification no significant differences are observed in the micro-structure of individual aggregates where the major amount of gas adsorption really occurs.

Clays and Clay Minerals↗