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At least 577 records · Page 32Linked to original sources
USGS2020

Development and testing of species-specific quantitative PCR assays for environmental DNA applications

New, non-invasive methods for detecting and monitoring species presence are being developed to aid in fisheries and wildlife conservation management. The use of environmental DNA (eDNA) samples for detecting macrobiota is one such group of methods that is rapidly becoming popular and being implemented in national management programs. Here we focus on the development of species-specific targeted assays for probe-based quantitative PCR (qPCR) applications. Using probe-based qPCR offers greater specificity than is possible with primers alone. Furthermore, the ability to quantify the amount of DNA in a sample can be useful in our understanding of the ecology of eDNA and the interpretation of eDNA detection patterns in the field. Careful consideration is needed in the development and testing of these assays to ensure the sensitivity and specificity of detecting the target species from an environmental sample. In this protocol we will delineate the steps needed to design and test probe-based assays for the detection of a target species; including creation of sequence databases, assay design, assay selection and optimization, testing assay performance, and field validation. Following these steps will help achieve an efficient, sensitive, and specific assay that can be used with confidence. We demonstrate this process with our assay designed for populations of the mucket ( Actinonaias ligamentina ), a freshwater mussel species found in the Clinch River, USA.

JOVE Journal Of Visualized Experiments↗
USGS1999

Properties of samples containing natural gas hydrate from the JAPEX/JNOC/GSC Mallik 2L-38 gas hydrate research well, determined using Gas Hydrate And Sediment Test Laboratory Instrument (GHASTLI)

As part of an ongoing laboratory study, preliminary acoustic, strength, and hydraulic conductivity results are presented from a suite of tests conducted on four natural-gas-hydrate-containing samples from the Mackenzie Delta JAPEX/JNOC/GSC Mallik 2L-38 gas hydrate research well. The gas hydrate samples were preserved in pressure vessels during transport from the Northwest Territories to Woods Hole, Massachusetts, where multistep tests were performed using GHASTLI (Gas Hydrate And Sediment Test Laboratory Instrument), which recreates pressure and temperature conditions that are stable for gas hydrate. Properties and changes in sediment behaviour were measured before, during, and after controlled gas hydrate dissociation. Significant amounts of gas hydrate occupied the sample pores and substantially increased acoustic velocity and shear strength.

Bulletin of the Geological Survey of Canada↗
USGS1992

Relating results from earthworm toxicity tests to agricultural soil

The artificial soil tests of the European Economic Community and of the Organization for Economic Cooperation produce data relating earthworm mortality to pesticide concentrations in soil under laboratory conditions. To apply these results to agricultural soils it is necessary to relate these concentrations to amounts of pesticide applied per area. This paper reviews the relevant published literature and suggests a simple relation for regulatory use. Hazards to earthworms from pesticides are suggested to be greatest soon after application, when the pesticides may be concentrated in a soil layer a few millimeters thick. For estimating exposure of earthworms, however, a thicker soil layer should be considered, to account for their movement through soil. During favorable weather conditions, earthworms belonging to species appropriate to the artificial soil test have been reported to confine their activity to a layer about 5 cm. If a 5-cm layer is accepted as relevant for regulatory purposes, then an application of 1 kg/ha would be equivalent to 1-67 ppm (dry) in the artificial soil test.

Book chapter↗
USGS1992

Field testing the Wildlink Capture Collar on wolves

Seventeen Wildlink capture collars were tested 61 times on 18 gray wolves ( Canis lupus ) during 1989-1991 in the Superior National Forest of northeastern Minnesota. Overall success rate was 89%, and most failures were attributable to premature battery expiration. When batteries were changed ≤ every 2 months, 17 of 17 tests succeeded. With an upgraded version of the collar in which batteries lasted longer, 17 of 18 tests succeeded. Over the 2-year study, 6 of the 17 collars were lost. For serially recapturing individuals, the Wildlink collar proved useful and reliable if care was taken to replace batteries at proper intervals.

Wildlife Society Bulletin↗
USGS2006

Risk assessment test for lead bioaccessibility to waterfowl in mine-impacted soils

Due to variations in soil physicochemical properties, species physiology, and contaminant speciation, Pb toxicity is difficult to evaluate without conducting in vivo dose-response studies. Such tests, however, are expensive and time consuming, making them impractical to use in assessment and management of contaminated environments. One possible alternative is to develop a physiologically based extraction test (PBET) that can be used to measure relative bioaccessibility. We developed and correlated a PBET designed to measure the bioaccessibility of Pb to waterfowl (W-PBET) in mine-impacted soils located in the Coeur d'Alene River Basin, Idaho. The W-PBET was also used to evaluate the impact of P amendments on Pb bioavailability. The W-PBET results were correlated to waterfowl-tissue Pb levels from a mallard duck [Anas platyrhynchos (L.)] feeding study. The W-PBET Pb concentrations were significantly less in the P-amended soils than in the unamended soils. Results from this study show that the W-PBET can be used to assess relative changes in Pb bioaccessibility to waterfowl in these mine-impacted soils, and therefore will be a valuable test to help manage and remediate contaminated soils.

Journal of Environmental Quality↗
USGS2010

Assessing transportation infrastructure impacts on rangelands: test of a standard rangeland assessment protocol

Linear disturbances associated with on- and off-road vehicle use on rangelands has increased dramatically throughout the world in recent decades. This increase is due to a variety of factors including increased availability of all-terrain vehicles, infrastructure development (oil, gas, renewable energy, and ex-urban), and recreational activities. In addition to the direct impacts of road development, the presence and use of roads may alter resilience of adjoining areas through indirect effects such as altered site hydrologic and eolian processes, invasive seed dispersal, and sediment transport. There are few standardized methods for assessing impacts of transportation-related land-use activities on soils and vegetation in arid and semi-arid rangelands. Interpreting Indicators of Rangeland Health (IIRH) is an internationally accepted qualitative assessment that is applied widely to rangelands. We tested the sensitivity of IIRH to impacts of roads, trails, and pipelines on adjacent lands by surveying plots at three distances from these linear disturbances. We performed tests at 16 randomly selected sites in each of three ecosystems (Northern High Plains, Colorado Plateau, and Chihuahuan Desert) for a total of 208 evaluation plots. We also evaluated the repeatability of IIRH when applied to road-related disturbance gradients. Finally, we tested extent of correlations between IIRH plot attribute departure classes and trends in a suite of quantitative indicators. Results indicated that the IIRH technique is sensitive to direct and indirect impacts of transportation activities with greater departure from reference condition near disturbances than far from disturbances. Trends in degradation of ecological processes detected with qualitative assessments were highly correlated with quantitative data. Qualitative and quantitative assessments employed in this study can be used to assess impacts of transportation features at the plot scale. Through integration with remote sensing technologies, these methods could also potentially be used to assess cumulative impacts of transportation networks at the landscape scale.

Rangeland Ecology and Management↗
USGS1985

Elemental X-ray mapping of agglutinated foraminifer tests: A non- destructive technique for determining compositional characteristics.

The composition of agglutinated foraminiferal tests vary remarkably in response to local substrate characteristics, physiochemical properties of the water column and species- dependant selectivity of test components. We have employed a technique that combines a scanning electron microscope with an energy dispersive X-ray spectrometer system to identify major and minor elemental constituents of agglutinated foraminiferal walls. As a sample is bombarded with a beam of high energy electrons, X-rays are generated that are characteristic of the elements present. As a result, X- ray density maps can be produced for each of several elements present in the tests of agglutinated foraminifers.

Micropaleontology↗
USGS1985

Comparison of aquifer characteristics derived from local and regional aquifer tests

A comparison of the aquifer parameter values obtained through the analysis of a local and a regional aquifer test involving the same area in southeast Georgia is made in order to evaluate the validity of extrapolating local aquifer-test results for use in large-scale flow simulations. Time-drawdown and time-recovery data were analyzed by using both graphical and least-squares fitting of the data to the Theis curve. Additionally, directional transmissivity, transmissivity tensor, and angle of anisotropy were computed for both tests.

Groundwater↗
USGS1986

MODE IDENTIFICATION OF AN ARCH DAM BY A DYNAMIC AIR-GUN TEST.

Thirteen natural frequencies of a concrete arch dam (Monticello Dam near Sacramento, California) have been identified by using a dynamic testing method which employs an air gun firing in the reservoir as the excitation source. These vibrations modes are determined from the peak responses in the Fourier amplitude spectra of the free-vibration data recorded at three crest locations using three-component geophones. Comparisons of the first five natural frequencies with results obtained by forced vibration tests using rotating mass shakers show good agreement. The next eight higher-frequency modes, not previously identified, are determined from data of the present tests.

Conference Paper↗
USGS1991

Assessment of fracture-sampling techniques for laboratory tests on core

As part of the site characterization work to be done at Yucca Mountain in Nye County, Nevada, a candidate site for the first mined-geologic repository for high-level nuclear waste, laboratory tests are proposed to evaluate fluid flow in single fractures. Laboratory and onsite tests were conducted to develop methods for collecting rock-core samples containing single fractures for the subsequent laboratory tests. Techniques for collecting rock cores with axial (parallel to the core axis) and radial (perpendicular to the core axis) fractures are discussed.

Conference Paper↗
USGS1997

Tests of wildlife habitat models to evaluate oak-mast production

We measured oak-mast production and forest structure and composition in the Ozark Mountains of Missouri and tested the accuracy of oak-mast prediction variables from 5 Habitat Suitability Index (HSI) species models. Acorn production was positively associated with several measures of abundance and canopy cover of oak trees, and with an index of mast production for all 5 HSI models. We developed 2 modified oak-mast models, based on inputs related to either oak tree density or oak canopy cover and diversity of oak tree species. The revised models accounted for 22-32% of the variance associated with acorn abundance. Future tests of HSI models should consider: (1) the concept of upper limits imposed by habitat and the effects of nonhabitat factors; (2) the benefits of a top-down approach to model development; and (3) testing models across broad geographic regions.

Wildlife Society Bulletin↗
USGS1997

Field-scale tests for determining mixing patterns associated with coarse-bubble air diffuser configurations, Egan Quarry, Illinois

The U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers, Chicago District did field-scale tests in August-September 1996 to determine mixing patterns associated with different configurations of coarse-bubble air diffusers. The tests were done in an approximately 13-meter deep quarry near Chicago, Ill. Three-dimensional velocity, water-temperature, dissolved oxygen concentration, and specific-conductivity profiles were collected from locations between approximately 2 to 30 meters from the diffusers for two sets of five test configurations; one set for stratified and one set for destratified conditions in the quarry. The data-collection methods and instrumentation used to characterize mixing patterns and interactions of coarse-bubble diffusers were successful. An extensive data set was collected and is available to calibrate and verify aeration and stratification models, and to characterize basic features of bubble-plume interaction.

Conference Paper↗
USGS2009

Field tests prove microscale NRU to upgrade low-btu gas

The Kansas Geological Survey (University of Kansas) and the American Energies Corp., Wichita, have conducted field tests of a scalable, microscale, N 2 -rejection unit (NRU) to demonstrate its effectiveness to upgrade low-pressure ((<100 psig) and low-volume (=100 Mcfd) low-btu gas to pipeline quality. The tests aim to develop inexpensive NRU technology, which is designed for low- volume, low-pressure gas wells, to significantly increase the contribution of marginal low-btu gas to the gas supply of the US. The NRU uses two towers and uses three stages, namely, adsorption under pressure, venting to 2 psig, and desorption under vacuum. The modular design allows additional sets of towers to be added or removed to handle increases or decreases in feed volumes. The field tests also reveal that a strong compressor, which is capable of evacuating the tower (volume) as quickly as possible, should be employed to reduce process cycle time and increase plant throughput.

Oil & Gas Journal↗
USGS1980

Evaluation of new spectral bands for multi-spectral imaging: SMIRR aircraft test results

A 10-channel radiometer called the Shuttle Multispectral Infrared Radiometer (SMIRR) is scheduled to take data from orbit on the second shuttle orbital light test. As part of the instrument test sequence, a series of aircraft flights was carried out over 10 test areas in Utah and Nevada. Apart from vegetation, the materials exposed at the surface were volcanic sequences ranging from tuffs to basalts, areas of hydrothermally altered volcanic rocks, sedimentary sequences of sandstone and carbonate rocks, and alluvial cover.

Sixth Annual Pecora Symposium and Exposition↗
USGS1992

Wildlife species richness in shelterbelts: test of a habitat model

Shelterbelts are human-made habitats consisting of rows of shrubs and trees planted either in fields or on the windward side of farmstead dwellings. Shelterbelts provide wooded habitat for a large variety of birds and other wildlife. A model to predict wildlife species richness in shelterbelts (Schroeder 1986) was published as part of the U.S. Fish and Wildlife Service Habitat Suitability Index (HSI) model series (Schamberger et al. 1982). HSI models have been used extensively by wildlife managers and land use planners to assess habitat quality. Several HSI models have become the focus of a test program that includes analysis of field data for corroboration, refutation, or modification of model hypotheses. Previous tests of HSI models focused either on single species (e.g., Cook and Irwin 1985, Morton et al. 1989, Schroeder 1990) or examined portions of HSI models, such as the relationship between cavity abundance and tree diameter (Allen and Corn 1990). The shelterbelt model, however, assesses habitat value at the community level. The effects of habitat characteristics, area, and perimeter on diversity and abundance of bird and mammal species in shelterbelts were first studied by Yahner (1983a, b). Johnson and Beck (1988) confirmed the importance of shelterbelts to wildlife and identified area, perimeter, and diversity and complexity of vegetation as key measurements of habitat quality. The shelterbelt model incorporates both specific habitat variables and larger scale parameters, such as area and configuration, to predict wildlife species richness. This shift in perspective comes at a time of increasing interest in conservation and planning beyond the species levels (e.g., Graul and Miller 1984, Hutto et al. 1987, Schroeder 1987: 26). We report results of a 3-year study of spatial and vegetative parameters and their relationship to breeding bird species richness (BSR) in 34 Kansas shelterbelts. Our objectives were to test the hypothesis presented in the original shelterbelt model (Schroeder 1986) that species richness can be predicted by shelterbelt characteristics and to investigate alternative models for predicting BSR in shelterbelts.

Kansas↗
USGS1981

Test drilling for fresh water in Tooele Valley, Utah

A test-drilling program in Tooele Valley, Utah, was conducted by the U.S. Geological Survey in cooperation with the Utah Department of Natural Resources, Division of Water Rights. The basic data and interpretation of each test hole are included in this report. Results obtained from the test drilling were used in a comprehensive ground-water investigation of the valley fill (Razem and Steiger, 1981).

Utah↗
USGS2014

Preliminary testing of flow-ecology hypotheses developed for the GCP LCC region

The Ecological Limits of Hydrological Alteration (ELOHA) framework calls for the development of flow-ecology hypotheses to support protection of the flow regime from ecologically harmful alteration due to human activities. As part of a larger instream flow project for the Gulf Coast Prairie Landscape Conservation Cooperative (GCP LCC), regional flow-ecology hypotheses were developed for fish, mussels, birds, and riparian vegetation (Davis and Brewer 20141 ). The objective of this study was to assess the usefulness of existing ecological and hydrological data to test these hypotheses or others that may be developed in the future. Several databases related to biological collections and hydrologic data from Oklahoma, Texas, and Louisiana were compiled. State fish-community data from Oklahoma and Louisiana were summarized and paired with existing USGS gage data having at least a 40-year period of record that could be separated into reference and current conditions for comparison. The objective of this study was not to conduct exhaustive analyses of these data, the hypotheses, or analyses interpretation, but rather to use these data to determine if existing data were adequate to statistically test the regional flow-ecology hypotheses. The regional flow-ecology hypotheses were developed for the GCP LCC by a committee chaired by Shannon Brewer and Mary Davis (Davis and Brewer 2014). Existing data were useful for informing the hypotheses and suggest support for some hypotheses, but also highlight the need for additional testing and development as some results contradicted hypotheses. Results presented here suggest existing data are adequate to support some flow-ecology hypotheses; however, lack of sampling effort reported with the fish collections and the need for ecoregion-specific analyses suggest more data would be beneficial to analyses in some ecoregions. Additional fish sampling data from Texas and Louisiana will be available for future analyses and may ameliorate some of the data concerns and improve hypothesis interpretation. If the regional hydrologic model currently under development by the U.S. Geological Survey for the South-Central Climate Science Center is improved to produce daily hydrographs, it will enable use of fish data at ungaged locations. In future efforts, exhaustive analyses using these data, in addition to the development of more complex multivariate hypotheses, would be beneficial to understanding data gaps, particularly as relevant to species of conservation concern.

Cooperator Science Series↗
USGS2007

The HRSC DTM test

The High Resolution Stereo Camera (HRSC, [1]) is part of the orbiter payload on the Mars Express (MEX) mission of the European Space Agency (ESA), orbiting the Red Planet in a highly elliptical orbit since January 2004. For the first time in planetary exploration, a camera system has especially been designed to meet the requirements of photogrammetry and cartography for mapping the complete surface of a planet [2]. For this purpose HRSC operates as a push broom scanning instrument with 9 CCD line detectors mounted in parallel in the focal plane of the camera. Data acquisition is achieved by five panchromatic channels under different observation angles and four colour channels. At periapsis the ground resolution of the nadir channel amounts to 12.5 m, the stereo channels are typically operated at a 2x coarser resolution with the two photometry and the four colour channels at 4x or 8x coarser resolution. The data provided by HRSC are well suited for the automatic generation of Digital Terrain Models (DTMs) and other 3D data products. Such products are of vital interest to planetary sciences. As the Mars Express mission has recently been extended the prospects for a complete topographic mapping of Mars by HRSC at very high resolution are very good, indeed. Image matching is well researched and has been documented in the literature. In general, it is agreed that in simple terrain and with adequate image acquisition geometry very good results can be achieved by totally automated approaches. Things start to be much more complicated if more complex situations are faced, such as steep terrain, height discontinuities, occlusions, poor texture, shadows, atmospheric dust, clouds, increased image noise, compression artefacts etc., some of which are commonplace in HRSC images. Nevertheless, automatic DTM generation from HRSC images by means of image matching has reached a very high level over the years. The systematic processing chain at DLR for producing preliminary DTMs with 200 m resolution [3] runs well and stable. In addition, several groups are able to produce DTMs using different approaches, or have developed alternative modules for parts of the DTM generation process [2]. Also, a few groups have been developing shape-from-shading techniques which have reached pre-operational efficiency. It is against this background that the desire was expressed to compare the individual approaches for deriving DTMs from HRSC images in order to assess their advantages and disadvantages. Based on carefully chosen test sites the test participants have produced DTMs which have been subsequently analysed in a quantitative and a qualitative manner. This paper reports on the results obtained in this test, more details can be found in [4].

Conference Paper↗