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Organizing phenological data resources to inform natural resource conservation

Changes in the timing of plant and animal life cycle events, in response to climate change, are already happening across the globe. The impacts of these changes may affect biodiversity via disruption to mutualisms, trophic mismatches, invasions and population declines. To understand the nature, causes and consequences of changed, varied or static phenologies, new data resources and tools are being developed across the globe. The USA National Phenology Network is developing a long-term, multi-taxa phenological database, together with a customizable infrastructure, to support conservation and management needs. We present current and potential applications of the infrastructure, across scales and user groups. The approaches described here are congruent with recent trends towards multi-agency, large-scale research and action.

Biological Conservation↗

Fish diversity, endemism, threats, and conservation in the Jinsha River basin (upper Yangtze River), China

The Jinsha River, which comprises the upper reaches of the Yangtze River, has among the highest freshwater fish biodiversity and endemism in China, but these characteristics have rarely been quantitatively evaluated at the basin scale. We used fish presence–absence data collected from the entire Jinsha River basin (JRB) from 1964 to 2017 to determine patterns in fish biodiversity. In total, 229 freshwater fish species from 9 orders, 26 families, and 110 genera were recorded. Of these species, 161 were endemic to China, with 94 species being endemic to the Yangtze River basin, and 39 species were threatened. Fish species richness was higher in the downstream river reaches and was higher in the main stem than in the tributaries. Overfishing, water pollution, and dam construction have been threatening fish diversity in the JRB for several decades. Conservation strategies similar to those used in North America may be applicable to the JRB to help protect native fishes in this important river basin. Such strategies include (1) assessment of several tributaries as fish reserves; (2) regular adjustment of turbine operations during the fish spawning period; and (3) regulation of the many co-occurring human stressors in the JRB.

Jinsha River Basin (Upper Yangtze River)↗

Global commitments to conserving and monitoring genetic diversity are now necessary and feasible

Global conservation policy and action have largely neglected protecting and monitoring genetic diversity—one of the three main pillars of biodiversity. Genetic diversity (diversity within species) underlies species’ adaptation and survival, ecosystem resilience, and societal innovation. The low priority given to genetic diversity has largely been due to knowledge gaps in key areas, including the importance of genetic diversity and the trends in genetic diversity change; the perceived high expense and low availability and the scattered nature of genetic data; and complicated concepts and information that are inaccessible to policymakers. However, numerous recent advances in knowledge, technology, databases, practice, and capacity have now set the stage for better integration of genetic diversity in policy instruments and conservation efforts. We review these developments and explore how they can support improved consideration of genetic diversity in global conservation policy commitments and enable countries to monitor, report on, and take action to maintain or restore genetic diversity.

BioScience↗

Effect of different sampling schemes on the spatial placement of conservation reserves in Utah, USA

We evaluated the effect of three different sampling schemes used to organize spatially explicit biological information had on the spatial placement of conservation reserves in Utah, USA. The three sampling schemes consisted of a hexagon representation developed by the EPA/EMAP program (statistical basis), watershed boundaries (ecological), and the current county boundaries of Utah (socio-political). Four decision criteria were used to estimate effects, including amount of area, length of edge, lowest number of contiguous reserves, and greatest number of terrestrial vertebrate species covered. A fifth evaluation criterion was the effect each sampling scheme had on the ability of the modeled conservation reserves to cover the six major ecoregions found in Utah. Of the three sampling schemes, county boundaries covered the greatest number of species, but also created the longest length of edge and greatest number of reserves. Watersheds maximized species coverage using the least amount of area. Hexagons and watersheds provide the least amount of edge and fewest number of reserves. Although there were differences in area, edge and number of reserves among the sampling schemes, all three schemes covered all the major ecoregions in Utah and their inclusive biodiversity. ?? 2003 Elsevier Science Ltd. All rights reserved.

Biological Conservation↗

A risk-based approach to evaluating wildlife demographics for management in a changing climate: A case study of the Lewis's Woodpecker

Given the projected threat that climate change poses to biodiversity, the need for proactive response efforts is clear. However, integrating uncertain climate change information into conservation planning is challenging, and more explicit guidance is needed. To this end, this article provides a specific example of how a risk-based approach can be used to incorporate a species' response to climate into conservation decisions. This is shown by taking advantage of species' response (i.e., impact) models that have been developed for a well-studied bird species of conservation concern. Specifically, we examine the current and potential impact of climate on nest survival of the Lewis's Woodpecker ( Melanerpes lewis ) in two different habitats. To address climate uncertainty, climate scenarios are developed by manipulating historical weather observations to create ensembles (i.e., multiple sequences of daily weather) that reflect historical variability and potential climate change. These ensembles allow for a probabilistic evaluation of the risk posed to Lewis's Woodpecker nest survival and are used in two demographic analyses. First, the relative value of each habitat is compared in terms of nest survival, and second, the likelihood of exceeding a critical population threshold is examined. By embedding the analyses in a risk framework, we show how management choices can be made to be commensurate with a defined level of acceptable risk. The results can be used to inform habitat prioritization and are discussed in the context of an economic framework for evaluating trade-offs between management alternatives.

Idaho↗

Are hotspots of evolutionary potential adequately protected in southern California?

Reserves are often designed to protect rare habitats, or "typical" exemplars of ecoregions and geomorphic provinces. This approach focuses on current patterns of organismal and ecosystem-level biodiversity, but typically ignores the evolutionary processes that control the gain and loss of biodiversity at these and other levels (e.g., genetic, ecological). In order to include evolutionary processes in conservation planning efforts, their spatial components must first be identified and mapped. We describe a GIS-based approach for explicitly mapping patterns of genetic divergence and diversity for multiple species (a "multi-species genetic landscape"). Using this approach, we analyzed mitochondrial DNA datasets from 21 vertebrate and invertebrate species in southern California to identify areas with common phylogeographic breaks and high intrapopulation diversity. The result is an evolutionary framework for southern California within which patterns of genetic diversity can be analyzed in the context of historical processes, future evolutionary potential and current reserve design. Our multi-species genetic landscapes pinpoint six hotspots where interpopulation genetic divergence is consistently high, five evolutionary hotspots within which genetic connectivity is high, and three hotspots where intrapopulation genetic diversity is high. These 14 hotspots can be grouped into eight geographic areas, of which five largely are unprotected at this time. The multi-species genetic landscape approach may provide an avenue to readily incorporate measures of evolutionary process into GIS-based systematic conservation assessment and land-use planning.

Biological Conservation↗

Climate-induced forest dieback as an emergent global phenomenon: Organized oral session at the Ecological Society of America/Society of Ecological Restoration Joint Meeting; San Jose, California, 5-10 August 2007

An organized oral session at the annual meeting of the Ecological Society of America in San Jose, Calif., posed this question: Is climate-induced drought stress triggering increasing rates and unusual patterns of forest die-off at a global scale? Twenty-nine researchers representing five continents reported on patterns, mechanisms, and projections of forest mortality. Observations include widespread forest dieback or reductions in tree cover and biodiversity in response to drought and warmer temperatures in the African Sahel (Patrick Gonzalez, The Nature Conservancy), Mediterranean and alpine Europe (Jorge Castro, Universidad de Granada), and Argentinean Patagonia (Thomas Kitzberger, Universidad Nacional del Comahue). In contrast, although much Eucalyptus mortality has resulted from recent droughts in Australia, warming trends have been less pronounced in the Southern Hemisphere and it is unclear if contemporary climate-induced tree mortality differs from previous historical drought impacts (Rod Fensham, Queensland Herbarium).

Eos, Transactions, American Geophysical Union↗

Wildlife connectivity approaches and best practices in U.S. state wildlife action plans

As habitat loss and fragmentation threaten biodiversity on large geographic scales, creating and maintaining connectivity of wildlife populations is an increasingly common conservation objective. To assess the progress and success of large-scale connectivity planning, conservation researchers need a set of plans that cover large geographic areas and can be analyzed as a single data set. The state wildlife action plans (SWAPs) fulfill these requirements. We examined 50 SWAPs to determine the extent to which wildlife connectivity planning, via linkages, is emphasized nationally. We defined linkage as connective land that enables wildlife movement. For our content analysis, we identified and quantified 6 keywords and 7 content criteria that ranged in specificity and were related to linkages for wide-ranging terrestrial vertebrates and examined relations between content criteria and statewide data on focal wide-ranging species, spending, revenue, and conserved land. Our results reflect nationwide disparities in linkage conservation priorities and highlight the continued need for wildlife linkage planning. Only 30% or less of the 50 SWAPs fulfilled highly specific content criteria (e.g., identifying geographic areas for linkage placement or management). We found positive correlations between our content criteria and statewide data on percent conserved land, total focal species, and spending on parks and recreation. We supplemented our content analysis with interviews with 17 conservation professionals to gain specific information about state-specific context and future directions of linkage conservation. Based on our results, relevant literature, and interview responses, we suggest the following best practices for wildlife linkage conservation plans: collect ecologically meaningful background data; be specific; establish community-wide partnerships; and incorporate sociopolitical and socioeconomic information.

Conservation Biology↗

Trout in hot water: A call for global action

Trout are one of the most culturally, economically, and ecologically important taxonomic groups of freshwater fishes worldwide (1). Native to all continents in the Northern Hemisphere, trout are a taxonomically diverse group of fishes belonging to 7 genera (Oncorhynchus, Salvelinus, Salmo, Hucho, Parahucho, Brachymystax, and Salvethymus) distributed across 52 countries. These coldwater specialists provide recreation and food to millions of people, and play important roles in ecosystem functioning and health (2). They are also extremely sensitive to human disturbances because they require cold, clean, complex, and connected habitats for survival and persistence (3) – all attributes that humans have substantially altered and degraded (4, 5). Despite their broad importance as societal icons and as indicators of biodiversity, many of the world’s trout species and lineages are endangered and some require immediate conservation efforts to reverse their precarious decline.

Science↗

U.S. Geological Survey science vision for native freshwater mussel research in the United States

Executive Summary North America is a global center for native freshwater mussel (order Unionida, hereinafter “mussels”) diversity, with more than 350 species. Mussels are among the most imperiled fauna on the planet. Reasons for both local and widespread declines in mussels are mostly unknown, although the threats may include habitat loss and fragmentation, diseases, environmental contaminants, altered flow regimes, migration barriers to larval hosts, non-native species, and climate change. Over the past three decades, research on mussels has been substantial. Nevertheless, current conservation and management efforts are limited by significant information gaps. For example, the effects of emerging stressors on mussels are largely unknown and identifying when habitats are rehabilitated and suitable for reestablishment of mussels remains challenging. Additionally, historical and current information on the distribution, taxonomy, and life histories are often unreliable or lacking altogether, and more reliable information is needed for many species. We identified focal research themes, goals, and objectives where research on mussels is needed based on information gaps identified through conversations with resource partners across local, regional, and national organizations. Research on biodiversity seeks to enhance the diversity of mussel species and populations to support healthy aquatic ecosystems. Research on emerging stressors seeks to improve the understanding of how mussel species, populations, and communities respond to emerging stressors, including environmental contaminants and climate change. Research on conservation seeks to enhance the recovery of species and populations and to identify data gaps limiting the conservation of mussels and their habitats. Mussels are in urgent need of proactive conservation because they are an integral part of our natural heritage, enhance biodiversity, and provide vital ecological services that support freshwater ecosystems. The U.S. Geological Survey (USGS) has been, and continues to be, a leader in mussel research. Although the USGS is well suited to address the broad-scale multidisciplinary research needed to conserve mussels, the USGS has had substantial loss of scientists with mussel expertise over the past 20 years. However, the breadth of the USGS expertise on mussels can be leveraged internally across other USGS mission and program areas and externally across research partners. Given the breadth and scope of the issues facing mussels across the United States, the research themes outlined in this science vision can only be accomplished through extensive collaborations between the USGS and the full spectrum of natural resource partners, including other Federal and State agencies, Tribal organizations, universities, industries, and nongovernmental organizations.

Circular↗

Climate change

Amphibian ecology and distribution are strongly correlated with climate. Regional patterns of amphibian biodiversity are intimately linked to temperature, evapotranspiration rate, and clines in humidity. While amphibians are and will continue to be adversely affected by recent and projected changes in climate, research suggests that adaptation may happen more slowly than the expected rate of environmental shifts. Here, we review conservation-relevant aspects of both realised and potential impacts of climate change, and outline options for amphibian conservation planning and management. Recent advances in our understanding of climate change impacts on amphibians have primarily stemmed from ecological modelling and direct assessment of climatic tolerances and dispersal capacities through physiological assays, landscape genetics, and dispersal tracking. Anthropogenic climate change has already altered amphibian assemblages and their impacts on ecosystem functioning and services. Because of known and hypothesised ecological tolerances, many amphibians might have reached or exceeded most limits in their ability to adapt to or tolerate further climate change, however the uncertainties are substantial. Implementation of conservation planning and action can help to forestall severe impacts of environmental shifts. Scientific research and science-based decision-making and policy development have already lagged; the current pace of conservation planning and action may not allow for effective identification of threats and mitigation. An increased response rate could help to avert further loss of amphibian biodiversity and decay of ecosystem services. The lack of basic field research in natural habitats continues to be an underlying challenge. We suggest priority areas of research to include the development of biologically realistic predictive models of amphibian response to climate change, field verification of model estimates and key parameters, population monitoring across multiple sites and taxa, and a combination of efforts within and across ecosystems to understand how impacts of climate change can be better mitigated.

Book chapter↗

USDA conservation program and practice effects on wetland ecosystem services in the Prairie Pothole Region

Implementation of the U.S. Department of Agriculture (USDA) Conservation Reserve Program (CRP) and Wetlands Reserve Program (WRP) has resulted in the restoration of >2 million ha of wetland and grassland habitats in the Prairie Pothole Region (PPR). Restoration of habitats through these programs provides diverse ecosystem services to society, but few investigators have evaluated the environmental benefits achieved by these programs. We describe changes in wetland processes, functions, and ecosystem services that occur when wetlands and adjacent uplands on agricultural lands are restored through Farm Bill conservation programs. At the scale of wetland catchments, projects have had positive impacts on water storage, reduction in sedimentation and nutrient loading, plant biodiversity, carbon sequestration, and wildlife habitat. However, lack of information on the geographic location of restored catchments relative to landscape‐level factors (e.g., watershed, proximity to rivers and lakes) limits interpretation of ecosystem services that operate at multiple scales such as floodwater retention, water quality improvement, and wildlife habitat suitability. Considerable opportunity exists for the USDA to incorporate important landscape factors to better target conservation practices and programs to optimize diverse ecosystem services. Restoration of hydrologic processes within wetlands (e.g., hydroperiod, water level dynamics) also requires a better understanding of the influence of conservation cover composition and structure, and management practices that occur in uplands surrounding wetlands. Although conservation programs have enhanced delivery of ecosystem services in the PPR, the use of programs to provide long‐term critical ecosystem services is uncertain because when contracts (especially CRP) expire, economic incentives may favor conversion of land to crop production, rather than reenrollment. As demands for agricultural products (food, fiber, biofuel) increase, Farm Bill conservation programs will become increasingly important to ensure provisioning of ecosystem services to society, especially in agriculturally dominated landscapes. Thus, continued development and support for conservation programs legislated through the Farm Bill will require a more comprehensive understanding of wetland ecological services to better evaluate program achievements relative to conservation goals.

Ecological Applications↗

Freezing temperatures restrict woody plant recruitment and restoration efforts in abandoned montane pastures

Tropical montane forests are being lost at an alarming rate but harbor some of the globe’s most unique biodiversity. The Hawaiian archipelago is a prime example of the importance of high elevation forests to species conservation and persistence as they serve as the last refugia for Hawaiian birds. Yet these forests have been converted to invasive dominated pastures, and efforts to restore them have been met with limited success. Unsuccessful forest restoration may be due to freezing temperatures acting as a demographic bottleneck by killing seedlings recruiting into pastures. We determined freezing tolerances of eight common native woody plants at a high-elevation forest on Hawaiʻi Island and compared these freezing tolerances to two years of site-specific winter temperatures and 17 years of regional temperature records. Low temperature extremes were more severe and common in pastures than under nearby 30-year-old canopy trees. Freezing temperatures over two years were severe enough to damage leaf tissues of six of eight species tested. Those species that displayed the greatest freezing tolerance were also those found naturally recruiting into open pastures. Temperature trends over the past 17 years show monthly minimum temperatures are not increasing as predicted by climate change. Persistent severe freezing events may limit seedling recruitment in the pasture, slowing native woody plant expansion into these abandoned pastures. The species-level differences in freezing tolerance show that current management actions are using species that are at high risk to freezing damage outside of the forest canopy and that alternative species may warrant consideration.

Global Ecology and Conservation↗

Filling in the gaps: Modelling native species richness and invasions using spatially incomplete data

Detailed knowledge of patterns of native species richness, an important component of biodiversity, and non-native species invasions is often lacking even though this knowledge is essential to conservation efforts. However, we cannot afford to wait for complete information on the distribution and abundance of native and harmful invasive species. Using information from counties well surveyed for plants across the USA, we developed models to fill data gaps in poorly surveyed areas by estimating the density (number of species km -2) of native and non-native plant species. Here, we show that native plant species density is non-random, predictable, and is the best predictor of non-native plant species density. We found that eastern agricultural sites and coastal areas are among the most invaded in terms of non-native plant species densities, and that the central USA appears to have the greatest ratio of non-native to native species. These large-scale models could also be applied to smaller spatial scales or other taxa to set priorities for conservation and invasion mitigation, prevention, and control efforts. ?? 2006 The Authors.

Diversity and Distributions↗

Comparison of burbot populations across adjacent native and introduced ranges

Introduced species are a threat to biodiversity. Burbot, Lota lota, a fish native to the Wind River Drainage, Wyoming and a species of conservation concern, have been introduced into the nearby Green River Drainage, Wyoming, where they are having negative effects on native fish species. We compared these native and introduced burbot populations to evaluate potential mechanisms that could be leading to introduction success. We examined genetic ancestry, physical habitat characteristics, community composition, and burbot abundance, relative weight, and size structure between the native and introduced range to elucidate potential differences. The origin of introduced burbot in Flaming Gorge Reservoir is most likely Boysen Reservoir and several nearby river populations in the native Wind River Drainage. Burbot populations did not show consistent differences in abundance, size structure, and relative weight between drainages, though Fontenelle Reservoir, in the introduced drainage, had the largest burbot. There were also limited environmental and community composition differences, though reservoirs in the introduced drainage had lower species richness and a higher percentage of non-native fish species than the reservoir in the native drainage. Burbot introduction in the Green River Drainage is likely an example of reservoir construction creating habitat with suitable environmental conditions to allow a southwards range expansion of this cold-water species. An understanding of the factors driving introduction success can allow better management of species, both in their introduced and native range.

Wyoming↗

Spatial scale selection for informing species conservation in a changing landscape

Identifying the relevant spatial scale at which species respond to features in a landscape (scale of effect) is a pressing research need as managers work to reduce biodiversity loss amid a variety of environmental challenges. Until recently, researchers often evaluated a subset of potential scales of effect inferred from previous studies in other locations, often based on different biological responses and environmental variables. These approaches, however, can create uncertainty as to whether relevant spatial scales were identified, and whether the effects of environmental variables at scale were accurately estimated. Identifying scales of effect is particularly relevant for the greater sage-grouse ( Centrocercus urophasianus ), a sagebrush-obligate species of conservation concern requiring large areas of intact sagebrush cover ( Artemisia spp.) for habitat. We demonstrate the application of a scale selection approach that jointly estimates the scale of effect and the effect of sagebrush cover on trends in population size using counts from 584 sage-grouse leks in southwestern Wyoming (2003–2019) and annual estimates of sagebrush cover from a remote sensing product. From this approach, we estimated a positive effect of mean sagebrush cover with a 95% probability that the scale of effect occurred within 5.02 km of leks. In an average year, we found that lower levels of sagebrush cover within these estimated scales could support increasing trends in sage-grouse population size when populations were small, but higher levels of sagebrush cover were needed to sustain growing populations when populations were larger. With standardized monitoring and annual estimates of vegetation from remote sensing, this scale selection approach can be applied to identify relevant scales for other populations, species, and biological responses such as demography and movement.

Wyoming↗

Defining fine-scaled population structure among continuously distributed populations

Understanding wildlife population structure and connectivity can help managers identify conservation strategies, as structure can facilitate the study of population changes and habitat connectivity can provide information on dispersal and biodiversity. To facilitate the use of wildlife monitoring data for improved adaptive management, we developed a novel approach to define hierarchical tiers (multiple scales) of population structure. We defined population structure by combining graph theory with biological inference about dispersal capability (based on movement, gene flow, and habitat condition) and functional processes affecting movement (e.g. habitat selection across scales of landscape preferences). First, we developed least-cost paths between high fidelity sites (habitat patches) using a cost surface, informed from functional processes of habitat characteristics to account for resistance of inter-patch movements. Second, we combined the paths into a multi-path graph construct. Third, we used information on potential connectivity (dispersal distances) and functional connectivity (permeability of fragmented landscapes based on selection preferences) to decompose the graph into hierarchical tiers of connected subpopulations, denoting the degree that dispersal affected population structure. As a case study, we applied our approach across the greater sage-grouse ( Centrocercus urophasianus ) range, a species of conservation concern in western United States. We described the relative importance of local populations and where to potentially avoid landscape disturbances that may negatively affect population connectivity using centrality measures supported by graph theory, and we demonstrated close alignment of the resulting population structure with population densities. This method can be adapted for other species with site fidelity and used as a management tool to evaluate population trends and responses to landscape changes across different temporal and spatial scales.

Methods in Ecology and Evolution↗

Range-wide trends in tiger conservation landscapes, 2001 - 2020

Of all the ways human beings have modified the planet over the last 10,000 years, habitat loss is the most important for other species. To address this most critical threat to biodiversity, governments, non-governmental actors, and the public need to know, in near real-time, where and when habitat loss is occurring. Here we present an integrated habitat modelling system at the range-wide scale for the tiger ( Panthera tigris ) to measure and monitor changes in tiger habitat at range-wide, national, biome, and landscape scales, as often as the underlying inputs change. We find that after nearly 150 years of decline, effective potential habitat for the tiger seems to have stabilized at around 16% of its indigenous extent (1.817 million km 2 ). As of the 1st of January 2020, there were 63 Tiger Conservation Landscapes in the world, covering 911,920 km 2 shared across ten of the 30 modern countries which once harbored tiger populations. Over the last 20 years, the total area of Tiger Conservation Landscapes (TCLs) declined from 1.025 million km 2 in 2001, a range-wide loss of 11%, with the greatest losses in Southeast Asia and southern China. Meanwhile, we documented expansions of modelled TCL area in India, Nepal, Bhutan, northern China, and southeastern Russia. We find significant potential for restoring tigers to existing habitats, identified here in 226 Restoration Landscapes. If these habitats had sufficient prey and were tigers able to find them, the occupied land base for tigers might increase by 50%. Our analytical system, incorporating Earth observations, in situ biological data, and a conservation-oriented modelling framework, provides the information the countries need to protect tigers and enhance habitat, including dynamic, spatially explicit maps and results, updated as often as the underlying data change. Our work builds on nearly 30 years of tiger conservation research and provides an accessible way for countries to measure progress and report outcomes. This work serves as a model for objective, range-wide, habitat monitoring as countries work to achieve the goals laid out in the Sustainable Development Goals, the 30×30 Agenda, and the Kunming-Montreal Global Biodiversity Framework.

Frontiers in Conservation Science↗