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At least 433 records · Page 24Linked to original sources

Disease control operations

Individual disease outbreaks have killed many thousands of animals on numerous occasions. Tens of thousands of migratory birds have died in single die-offs with as many as 1,000 birds succumbing in 1 day. In mammals, individual disease outbreaks have killed hundreds to thousands of animals with, for example, hemorrhagic disease in white-tailed deer, distemper in raccoon, Errington's disease in muskrat, and sylvatic plague in wild rodents. The ability to successfully combat such explosive situations is highly dependent n the readiness of field personnel to deal with them. Because many disease agents can spread though wildlife populations very fast, advance preparation is essential in preventing infected animals from spreading disease to additional species and locations. Carefully though-out disease contingency plans should be developed as practical working documents for field personnel and updated as necessary. Such well-designed plans can prove invaluable in minimizing wildlife losses and costs associated with disease control activities. Although requirements for disease control operations vary and must be tailored to each situation, all disease contingency planning involved general concepts and basic biological information. This chapter, intended as a practical guide, identifies the major activities and needs of disease control operations, and relates them to disease contingency planning.

Report↗

Seismic refraction profile, Kingdom of Saudi Arabia: field operations, instrumentation, and initial results

In February 1978 a seismic deep-refraction profile was recorded by the USGS along a 1000-km line across the Arabian Shield in western Saudi Arabia. The line begins in Paleozoic and Mesozoic cover rocks near Riyadh on the Arabian Platform, leads southwesterly across three major Precambrian tectonic provinces, traverses Cenozoic rocks of the coastal plain near Jizan (Tihamat Asir), and terminates at the outer edge of the Farasan Bank in the southern Red Sea. More than 500 surveyed recording sites were occupied, including 19 in the Farasan Islands. Six shot points were used--five on land, with charges placed mostly below water table in drill holes, and one at sea, with charges placed on the sea floor and fired from a ship. The total charge consumed was slightly in excess of 61 metric tons in 21 discrete firings. Seismic energy was recorded by means of a set of 100 newly developed portable seismic stations. Each station consists of a standard 2-Hz vertical geophone coupled to a self-contained analog recording instrument equipped with a magnetic-tape cassette. The stations were deployed in groups of 20 by five observer teams, each generally consisting of two scientist-technicians and a surveyor-guide. On the day prior to deployment, the instruments were calibrated and programmed for automatic operation by means of a specially designed device called a hand-held tester. At each of ten pre-selected recording time windows on a designated firing day, the instruments were programmed to turn on, stabilize, record internal calibration signals, record the seismic signals at three levels of amplification, and then deactivate. After the final window in the firing sequence, all instruments were retrieved and their data tapes removed for processing. A specially designed, field tape- dubbing system was utilized at shot point camps to organize and edit data recorded on the cassette tapes. The main functions of this system are to concatenate all data from each shot on any given day onto a single shot tape, and to provide hard copy for monitoring recorder performance so that any problems can be corrected prior to the next deployment. Composite digital record sections were produced from the dubbed tapes for each shot point by a portable processing and plotting system. The heart of this system is a DEC PDP 11VO3 computer, which controls a cassette playback unit identical to those used in the recorders and dubbers, a set of discriminators, a time-code translator, a digitizer, and a digital plotter. The system was used to maintain various informational data sets and to produce tabulations and listings of various sorts during the field operations, in addition to its main task of producing digital record sections. Two master clocks, both set to time signals broadcast by the British Broadcasting Corporation, provided absolute time for the recording operations. One was located on the ship and the other was stationed at a base camp on the mainland. The land-based master clock was used to set three additional master clocks located at the other active shot points a few days in advance of each firing, and these clocks were then used to set the internal clocks in the portable seismic stations via the hand-held tester. A master clock signal was also linked to the firing system at each shot point for determination of the absolute shot instant. It is possible to construct a generalized crustal model from examination of the six shot point composite record sections obtained in the field. Such a model rests upon a number of simplifying assumptions and will almost certainly be modified at a later stage of interpretation. The main assumptions are that the crust consists of two homogeneous isotropic layers having no velocity inversion,, that the Mohorovicic discontinuity is sharp, and that effects of surface inhomogeneities and elevation changes can be ignored. The main characteristics of the tentative model are the following: (1) The thickness of th

Open-File Report↗

Spatial modeling of common raven density and occurrence helps guide landscape management within Great Basin sagebrush ecosystems

Common ravens ( Corvus corax ; ravens) are a behaviorally flexible nest predator of several avian species, including species of conservation concern. Movement patterns based on life history phases, particularly territoriality of breeding birds and transiency of nonbreeding birds, are thought to influence the frequency and efficacy of nest predation. As such, predicting where on the landscape territorial resident and non-territorial transient birds may be found in relation to the distribution of sensitive prey is of increasing importance to managers and conservationists. From 2007 to 2019, we conducted raven point count surveys between mid-March and mid-September across 43 different field sites representing typical sagebrush ( Artemisia spp.) ecosystems of the Great Basin, USA. The surveys conducted during 2007–2016 were used in previously published maps of raven occurrence and density. Here, we examined the relationship between occurrence and density of ravens using spatially explicit predictions from 2 previously published studies and differentiate areas occupied by higher concentrations of resident ravens as opposed to transients. Surveys conducted during 2017–2019 were subsequently used to evaluate the predicted trends from our analytical approach. Specifically, we used residuals from a generalized linear regression to establish the relationship between occurrence and density, which ultimately resulted in a spatially explicit categorical map that identifies areas of resident versus transient ravens. We evaluated mapped categories using independently collected observed raven group sizes from the 2017–2019 survey data, as well as an independent dataset of global positioning system locations of resident and transient individuals monitored during 2019–2020. We observed moderate agreement between the mapped categories and independent datasets for both evaluation approaches. Our map provides broad inference about spatial variation in potential predation risk from ravens for species such as greater sage-grouse ( Centrocercus urophasianus ) and can be used as a valuable spatial layer for decision support tools aimed at guiding raven management decisions and, ultimately, improving survival and reproduction of sensitive prey within the Great Basin.

Arizona, California, Idaho, Montana, Nevada, Orego↗

Background and introduction: Chapter 1

The Salt Cedar and Russian Olive Control Demonstration Act of 2006 (Public Law 109-320; hereafter the Act) directs the Department of the Interior to submit a report to Congress1 that includes an assessment of several issues surrounding these two nonnative trees, now dominant components of the vegetation along many rivers in the Western United States. Specifically, the Act calls for “…an assessment of the extent of salt cedar and Russian olive infestation on public and private land in the western United States,” which shall “A) consider existing research on methods to control salt cedar and Russian olive trees; B) consider the feasibility of reducing water consumption by salt cedar and Russian olive trees; C) consider methods of and challenges associated with the revegetation or restoration of infested land; and D) estimate the costs of destruction of salt cedar and Russian olive trees, related biomass removal, and revegetation or restoration and maintenance of the infested land.” Finally, the Act calls for discussion of “(i) long-term management and funding strategies…that could be implemented by Federal, State, tribal, and private land managers and owners to address the infestation by salt cedar and Russian olive; (ii) any deficiencies in the assessment or areas for additional study; and (iii) any field demonstrations that would be useful in the effort to control salt cedar and Russian olive.” The primary intent of this report is to provide the science assessment called for under the Act. A secondary purpose is to provide a common background for applicants for prospective demonstration projects, should funds be appropriated for this second phase of the Act. In addition to relying on the direction provided under Section C of the Act, the authors of this report also drew upon the detailed list of considerations presented in Section E of the Act to guide development of more expansive discussions of topics relevant to saltcedar and Russian olive control efforts. In addition to the legislative context described above, this chapter describes the geographic and environmental contexts surrounding the Act, including key terminology used in subsequent chapters of this report. Subsequent chapters synthesize the state-of-the-science on the following topics: distribution and abundance (extent) of saltcedar and Russian olive in the Western United States, potential for water savings associated with control of saltcedar and Russian olive and associated restoration, considerations related to wildlife use of saltcedar and Russian olive habitat or restored habitats, methods to control saltcedar and Russian olive, possible utilization of dead biomass following control, and approaches and challenges associated with revegetation or restoration following control. A concluding chapter includes discussion of possible long-term management strategies, areas for additional study, potentially useful field demonstrations, and a planning process for on-the-ground projects involving removal of saltcedar and Russian olive.

Book chapter↗

Extent and persistence of secondary water quality impacts after enhanced reductive bioremediation

Electron donor (ED) addition can be very effective in stimulating enhanced reductive bioremediation (ERB) of a wide variety of groundwater contaminants. However, ERB can result in Secondary Water Quality Impacts (SWQIs) including decreased levels of dissolved oxygen (O 2 ), nitrate (NO 3- ), and sulfate (SO 4 2- ), and elevated levels of dissolved manganese (Mn 2+ ), dissolved iron (Fe 2+ ), methane (CH 4 ), sulfide (S 2- ), organic carbon, and naturally occurring hazardous compounds (e.g., arsenic). Fortunately, this ‘plume’ of impacted groundwater is usually confined within the original contaminant plume and is unlikely to adversely impact potable water supplies. This report summarizes available information on processes controlling the production and natural attenuation of SWQI parameters and can be used as a guide in understanding the magnitude, areal extent, and duration of SWQIs in ERB treatment zones and the natural attenuation of SWQI parameters as the dissolved solutes migrate downgradient with ambient groundwater flow. This information was compiled from a wide variety of sources including a survey and statistical analysis of SWQIs from 47 ERB sites, geochemical model simulations, field studies at sites where organic-rich materials have entered the subsurface (e.g., wastewater, landfill leachate, and hydrocarbon plumes), and basic information on physical, chemical, and biological processes in the subsurface. This information is then integrated to provide a general conceptual model of the major processes controlling SWQI production and attenuation.

Technical Report↗

Photographic guide to the leaf litter arthropod community of the lowland wet forest ecosystem of the Island of Hawaiʻi

Leaf litter arthropods are important components of the food web in forests, and their presence and diversity can provide information on forest health. There has been very little documentation of the leaf litter arthropods in Hawaiian forest ecosystems. This technical report is a photographic guide to some common arthropods collected from forest leaf litter at the Liko Nā Pilina Hybrid Ecosystems Project study site, a lowland wet forest in Hilo, Island of Hawaiʻi, USA. Leaf litter samples were collected from plots of invaded and experimental restoration communities using two complementary methods (litterbags and quadrats), and arthropods were extracted using Berlese funnels. The field site contained many morphospecies that were rare and locally distributed across plots, and only a few that were very common and widely distributed. The majority of the morphospecies identified were mites. This photoguide is designed to help identify arthropods found in plant litter in Hawaiian lowland forests and it may assist with research and education efforts concerned with the diversity, ecology, or conservation of litter arthropods across the Hawaiian archipelago and other Pacific islands.

Hawaii↗

Designing multi-scale hierarchical monitoring frameworks for wildlife to support management: A sage-grouse case study

Population monitoring is integral to the conservation and management of wildlife; yet, analyses of population demographic data rarely consider processes occurring across spatial scales, potentially limiting the effectiveness of adaptive management. Therefore, we developed a method to identify hierarchical levels of organization (i.e., populations) to define multiple spatial scales, specifically intended to help guide appropriate conservation and management actions. This approach can support mobile species with high site fidelity where surveys occur on birthing/breeding grounds or migratory stopovers. Our approach used a graphbased clustering algorithm (Spatial K’luster Analysis by Tree Edge Removal) that explicitly included habitat selection information at multiple scales and further refined with constraint-based rules. We applied these concepts to greater sage-grouse leks (breeding grounds), a species of conservation concern, in two different ecological contexts (Nevada and Wyoming, USA). The constraint-based rules accounted for inter-lek movement distances based on literature and field studies in Nevada from 2012 to 2016, included methods to support a spatially balanced monitoring design, and identified barriers to movements among leks based on resistance surfaces. We evaluated the performance of our hierarchical clusters in Nevada using independent data from radio-marked sage-grouse, and we found the finest-scaled cluster level captured ~90% of sagegrouse movements and mid-level scales captured ~97–99% of movements. We expected comparable performance for Wyoming, where we lacked radio-marked sage-grouse for an evaluation, because genetic studies estimate similar dispersal distances to our ~15 km inter-lek movement distance in Nevada. For sage-grouse and other mobile species with high site fidelity, our approach to defining these frameworks could prove valuable for conservation and management applications, such as improving estimation of scale-dependent population trends and guiding the prescription of management actions at spatial scales that align with identified threats. Specific to sage-grouse, our analysis sets the stage for designing a monitoring framework that relies on comparison of short- and long-term population trends across our defined spatial scales and identifies and disentangles factors driving local (e.g., habitat quality) and regional (e.g., climate) population changes, thereby supporting scale-dependent management and research needs for adaptive management practices.

Nevada, Wyoming↗

Predicted occurrence of Eastern Newts (Notophthalmus viridescens viridescens) across the northeastern United States

Effective conservation is becoming more difficult as threats to wildlife increase. Natural resource managers are pressured to make difficult decisions with limited resources, and in many instances, large uncertainty. Scientists and managers tasked with the conservation of a species need tools to help guide efficient decision-making. Often, information for management decisions is insufficient. Tools that help to inform decision makers and address uncertainty are invaluable to effective conservation initiatives. The objective of our study was to create a model to best predict Eastern Newt (Notophthalmus viridescens viridescens) breeding occurrence across the northeastern United States. We estimated relationships between breeding newt field survey data and landscape-level covariates while accounting for imperfect detection. We then used those relationships to map expected newt breeding site occupancy across the northeastern United States. We find that newt breeding occupancy is inversely correlated to the amount of human influence in a landscape, highlighting a key existing threat to Eastern Newts that may be exacerbated by the introduction of novel pathogens, such as the fungal pathogen Batrachochytrium salamandrivorans.

Herpetologica↗

Disease control operations

Individual disease outbreaks have killed many thousands of animals on numerous occasions. Tens of thousands of migratory birds have died in single die-offs with as many as 1,000 birds succumbing in 1 day. The ability to successfully combat such explosive situations is highly dependent on the readiness of field personnel to deal with them. Because many disease agents can spread through wildlife populations very quickly, advance preparation is essential for preventing infected animals from spreading disease to additional species and locations. Carefully thought-out disease contingency plans should be developed as practical working documents for field personnel and updated as necessary. Well-designed plans can prove invaluable in minimizing wildlife losses and the costs associated with disease control activities. Although requirements for disease control operations vary and must be tailored to each situation, all disease contingency planning involves general concepts and basic biological information. This chapter, which is intended to be a practical guide, identifies the major activities and needs of disease control operations, and relates them to disease contingency planning.

Information and Technology Report↗

Reconnaissance geologic map and mineral resource potential of the Gearhart Mountain Wilderness and Roadless Area (6225), Lake and Klamath counties, Oregon

The Gearhart Mountain Wilderness, Lake and Klamath Counties, Oreg., is devoid of mines and mineral prospects and there are no known mining claims within the area. Furthermore, the results of this mineral appraisal indicate that there is little likelihood that commercial deposits of metallic minerals will be found in the area. Commercial uranium deposits, like those at the White King and Lucky Lass mines about 16 mi (~25 km) to the southeast of the wilderness, and deposits of mercury, like those south-southeast of the wilderness, are not likely to be found within the wilderness, even though all of these areas are characterized by middle and late Cenozoic intrusive and extrusive volcanic rocks. Rock of low commercial value for construction purposes is present, but better and more accessible deposits are present in adjacent regions. There is no evidence to indicate that mineral fuels are present in the area. Higher than normal heat floe characterizes the region containing Gerheart Mountain, indicating that it may have some, as yet undefined, potential for the development of geothermal energy. Data are not available to determine whether this higher than normal heat flow is meaningful in terms of a potential energy source or as a guide to possible future exploration; lack of thermal springs or other evidence of localized geothermal anomalies within the Gerhart Mountain suggest, however, that the potential for the development of geothermal energy is probably low.

Oregon↗

Proceedings of the first U.S. Geological Survey scientific information management workshop, March 21-23, 2006

In March 2006, the U.S. Geological Survey (USGS) held the first Scientific Information Management (SIM) Workshop in Reston, Virginia. The workshop brought together more than 150 SIM professionals from across the organization to discuss the range and importance of SIM problems, identify common challenges and solutions, and investigate the use and value of “communities of practice” (CoP) as mechanisms to address these issues. The 3-day workshop began with presentations of SIM challenges faced by the Long Term Ecological Research (LTER) network and two USGS programs from geology and hydrology. These presentations were followed by a keynote address and discussion of CoP by Dr. Etienne Wenger, a pioneer and leading expert in CoP, who defined them as "groups of people who share a passion for something that they know how to do and who interact regularly to learn how to do it better." Wenger addressed the roles and characteristics of CoP, how they complement formal organizational structures, and how they can be fostered. Following this motivating overview, five panelists (including Dr. Wenger) with CoP experience in different institutional settings provided their perspectives and lessons learned. The first day closed with an open discussion on the potential intersection of SIM at the USGS with SIM challenges and the potential for CoP. The second session began the process of developing a common vocabulary for both scientific data management and CoP, and a list of eight guiding principles for information management were proposed for discussion and constructive criticism. Following this discussion, 20 live demonstrations and posters of SIM tools developed by various USGS programs and projects were presented. Two community-building sessions were held to explore the next steps in 12 specific areas: Archiving of Scientific Data and Information; Database Networks; Digital Libraries; Emerging Workforce; Field Data for Small Research Projects; Knowledge Capture; Knowledge Organization Systems and Controlled Vocabularies; Large Time Series Data Sets; Metadata; Portals and Frameworks; Preservation of Physical Collections; and Scientific Data from Monitoring Programs. In about two-thirds of these areas, initial steps to forming CoP are now underway. The final afternoon included a panel in which information professionals, managers, program coordinators, and associate directors shared their perspectives on the workshop, on ways in which the USGS could better manage its scientific information, and on the use of CoP as informal mechanisms to complement formal organizational structures. The final session focused on developing the next steps, an action plan, and a communication strategy to ensure continued development.

Scientific Investigations Report↗

Adaptation and Response in Drylands (ARID): Community insights for scoping a NASA terrestrial ecology field campaign in drylands

Dryland ecosystems cover 40% of our planet's land surface, support billions of people, and are responding rapidly to climate and land use change. These expansive systems also dominate core aspects of Earth's climate, storing and exchanging vast amounts of water, carbon, and energy with the atmosphere. Despite their indispensable ecosystem services and high vulnerability to change, drylands are one of the least understood ecosystem types, partly due to challenges studying their heterogeneous landscapes and misconceptions that drylands are unproductive “wastelands.” Consequently, inadequate understanding of dryland processes has resulted in poor model representation and forecasting capacity, hindering decision making for these at-risk ecosystems. NASA satellite resources are increasingly available at the higher resolutions needed to enhance understanding of drylands' heterogeneous spatiotemporal dynamics. NASA's Terrestrial Ecology Program solicited proposals for scoping a multi-year field campaign, of which Adaptation and Response in Drylands (ARID) was one of two scoping studies selected. A primary goal of the scoping study is to gather input from the scientific and data end-user communities on dryland research gaps and data user needs. Here, we provide an overview of the ARID team's community engagement and how it has guided development of our framework. This includes an ARID kickoff meeting with over 300 participants held in October 2023 at the University of Arizona to gather input from data end-users and scientists. We also summarize insights gained from hundreds of follow-up activities, including from a tribal-engagement focused workshop in New Mexico, conference town halls, intensive roundtables, and international engagements.

Earth's Future↗

The geology of Six Mile Reef, eastern Long Island Sound

Digital terrain models, which can be produced from multibeam bathymetric data, are ordered arrays of depths for a number of sea-floor positions sampled at regularly spaced intervals. These models provide valuable base maps for marine geological interpretations that help define the variability of the sea floor (one of the primary controls of benthic habitat diversity), improve our understanding of the processes that control the distribution and transport of bottom sediments and the distribution of benthic habitats, and provide a detailed framework to guide and assist future research, monitoring, and management activities. The bathymetry interpreted herein was processed from data collected by National Oceanic and Atmospheric Administration vessels during hydrographic surveys H11361 and H11252. These surveys mapped roughly 156 km² of sea floor in the vicinity of Six Mile Reef, an area of eastern Long Island Sound where the sea floor is characterized by fields of large sand waves and an east-west decreasing gradient of bottom tidal-current speeds (fig. 1). Interpretations of the bathymetry are supplemented by concurrently collected seismic reflection data, as well as archived historic seismic profiles, sediment samples and bottom photography collected as part of a long-standing geologic mapping partnership between the State of Connecticut and the U.S. Geological Survey (fig. 2). The purpose of this digital report is 1) to provide the acoustic data layers produced during the above mentioned surveys, 2) to use them to describe the sea-floor character and bedform morphologies near Six Mile Reef, and 3) to relate these descriptions to ongoing processes and sedimentary environments.

Connecticut, New York↗

Climate change refugia hotspots for priority species: A case study in East Africa

Natural resource managers and policymakers need actionable climate data to guide conservation decisions. Conserving climate change refugia, areas relatively buffered from contemporary climate change, is increasingly considered an effective strategy for adaptation. Despite tropical species facing heightened vulnerability to climate change, the tropics remain underserved in climate adaptation research. We coproduced with Tanzanian partners the first comprehensive assessment of climate change refugia across Tanzania through extensive consultation, in-person conversations, and field visits to priority ecosystems, ensuring our analysis addressed local conservation needs and decision-making contexts. We developed species distribution models for 33 terrestrial animal species using maximum entropy and boosted regression tree algorithms. We projected future suitable habitats for SSP126 and SSP585, for 2011–2040 and 2071–2100, using GFDL Earth System and the UK Earth System models. More than half under SSP126 and 79% of focal species under SSP585 lost their suitable habitat by 2100. Serengeti National Park, Northern Highlands Forest Reserve, and the Eastern Arc Mountains emerged as key climate change refugia, while other protected areas, including Kigosi and Ugalla River National Parks, had no climate change refugia. This assessment provides actionable insights for Tanzania's conservation prioritization while identifying critical research gaps in western and montane ecosystems.

Conservation Science and Practice↗

Communicating hazards—A social science review to meet U.S. Geological Survey needs

This report is for U.S. Geological Survey (USGS)—and any other—hazard scientists who want to improve the understanding and use of their scientific information, particularly by non-experts. In order for people to use science, they need to understand it. The highly technical, specialized nature of scientific information makes that difficult, particularly when few scientists are trained to communicate with people outside their fields. These issues are of special importance to the USGS because it has many users who are not scientists and because it develops and applies hazard science to help protect the safety, security, and economic well-being of our Nation. In 2010, the Science Application for Risk Reduction group at the USGS discovered the Center for Research on Environmental Decisions (CRED) guide, “The Psychology of Climate Change Communication.” Ever since, a growing number of USGS staff who need to communicate about hazards have used that guide and have asked CRED for a companion report dedicated to hazard communication to harness knowledge from more than 50 years of social science research. In 2016, the USGS and CRED launched a collaboration to develop that companion report. Ultimately, a CRED hazard communication guide would be a Columbia University publication with a wide focus and would include many hazards that are outside the USGS purview. This report is a first step and concentrates strictly on hazard communication needs at the USGS. To identify those needs and tailor this effort to USGS hazard communication priorities, this collaboration began with telephone interviews and an online survey of USGS staff. This report is the result; it summarizes social science research and experience in the areas of hazard communication that USGS participants deemed most important to include.

Circular↗

Refinement of eDNA as an early monitoring tool at the landscape-level: Study design considerations

Natural resource managers use data on the spatial range of species to guide management decisions. These data come from survey or monitoring efforts that use a wide variety of tools. Environmental DNA (eDNA) is a surveillance tool that uses genetic markers for detecting species and holds potential as a tool for large-scale monitoring programs. Two challenges of eDNA-based studies are uncertainties created by imperfect capture of eDNA in collection samples (e.g., water field samples) and imperfect detection of eDNA using molecular methods (e.g., quantitative PCR). Occurrence models can be used to address these challenges, thus we use an occurrence model to address two objectives: First, determine how many samples were required to detect species using eDNA; Second, examine when and where to take samples. We collected water samples from three different habitat types in the Upper Mississippi River when both Bighead Carp and Silver Carp were known to be present based on telemetry detections. Each habitat type (backwater, tributary, and impoundment) was sampled during April, May and November. Detections of eDNA for both species varied across sites and months, but were generally low, 0 - 19.3% of samples were positive for eDNA. Overall, we found that eDNA-based sampling holds promise to be a powerful monitoring tool for resource managers, however, limitations of eDNA-based sampling include different biological and ecological characteristics of target species such as seasonal habitat usage patterns as well as aspects of different physical environments that impact the implementation of these methods such as water temperature.

Ecological Applications↗

Field Manual of Wildlife Diseases

Welcome to a new version of the “Field Manual of Wildlife Diseases.” Unlike the previous printed versions of this publication, this new version is being developed as a “living“ electronic publication. Content will periodically be added and (or) updated as warranted, and it will always be reviewed by scientific experts (“peer reviewed”) before it is released. Thus, this publication will never be completed, and readers should download revised versions of specific chapters, glossaries, and the appendixes whenever they visit the publication Web site. The purpose of this manual is to provide information that will enhance the ecological understanding and comfort level of nonspecialists so that they can address various aspects of wildlife disease within the context of wildlife conservation and management. Other readers, from students to science professionals, may also find the information presented to be of interest and value. Constructive suggestions from readers will help guide adjustments as this project progresses. We begin this new manual with introductory contextual and historical background about the convergence of wildlife disease with wildlife management as a wildlife conservation concern (section A, chap. 1). The remainder of the publication is focused on pragmatic information and considerations for addressing various aspects of wildlife disease. Section B focuses on concepts associated with disease surveillance and response to outbreaks, and section C deals with specific techniques for disease surveillance and investigation. Section D, “Diseases of Wild Birds,” and others that follow will address diseases of concern in various species groups. Electronic links facilitate timely access to a wide variety of supplemental information and processes relevant to content in this new version of the “Field Manual of Wildlife Diseases.”

Techniques and Methods↗

Evaluating dewatering approaches to protect larval Pacific lamprey

Executive Summary Larval Pacific lamprey live for several years burrowed in nearshore sediments where they filter feed on detritus and organic matter. Dewatering of larval habitat can occur as a result of flow-management practices, construction projects, or seasonal closures of irrigation diversions. Effective management of dewatering events requires guidance on approaches to protect lamprey, such as dewatering rates and light conditions (day or night) that allow lamprey the best opportunity to relocate water and avoid being stranded. We conducted controlled laboratory experiments comparing five dewatering rates (1, 1.8, 4, 8, and 16 inches per hour [in/h]) and two light conditions (light and dark) to evaluate their effectiveness in protecting larval lamprey. We used a tank with a simulated shoreline at a 10-percent slope filled with river sediment and manipulated the outflow to control the rate of dewatering until water was covering only the sediment in the lowest tank section, at the bottom of the slope. Following dewatering, larvae were classified as either stranded (in or on the substrate outside the watered area) or safe (relocated to the wetted area at the lower end of the tank). All study groups experienced high rates of stranding. The lowest stranding rates were for 1 in/h, in both light (77 percent) and dark (80 percent). Faster dewatering rates generally produced higher percentages of stranded fish, and both the dark and light trials at 16 in/h stranded all larvae. At each of the five dewatering rates, trials conducted in the dark stranded the same or higher proportions of fish than the corresponding trial conducted in the light, so there was no clear advantage to dewatering during dark conditions. The largest contribution to stranding rates for all study groups was the high number of larvae (50–80 percent) that did not initiate movement in response to dewatering and remained in the uppermost tank section where they were stocked at the start of the trials. The proportion of larvae that emerged from the sediment during dewatering trials was approximately 30 percent, and fish that emerged were consistently smaller than those that remained burrowed. Combining all dewatering rates, emergence was 31.3 percent for groups under dark conditions and 30.7 percent for groups under light conditions. We recorded the timing of emergence for 58 larvae and their median time to emerge (after the surface of the sediment in the uppermost tank section was dewatered) was 0.62 hour (h) (range 0–4.5 h). We measured larval movement rates and found that large fish moved faster than small fish. Differences in larval movement rate based on light condition were significant only for large fish, which had a significantly faster rate during light conditions. Larval lamprey moved, over short distances, at rates that exceeded the fastest dewatering rate we tested. The mean movement rates for groups ranged from 19.0 to 44.4 centimeters per minute [cm/min]) and the fastest dewatering rate (16 in/h) is equivalent to less than 1 cm/min. Only the slowest movement rate measured, 6.6 cm/min for one individual lamprey, was slower than the fastest dewatering rate. We also investigated lamprey responses to a series of dewatering and rewatering events. Individual larvae were held in cylinders and exposed to four cycles of dewatering and rewatering using dewatering rates of 1 and 16 in/h and a rewatering rate of 2 in/h. Each dewatering rate was tested under both dark and light conditions. The location of fish, either on the surface of the sediment or burrowed, was recorded after each dewatering event for four rounds. The most common individual fish response for all study groups was to remain burrowed through all four rounds, and there were large differences in response between small and large larvae. Overall for small larvae, combining all groups, 14 of 28 fish emerged, and of those, 8 died and 1 was lethargic. The 1-in/h rate had 7 of the 8 mortalities, split about equally between the dark (3 fish) and light (4 fish) trials. All but one fish that died emerged from the sediment at some point during the four rounds of dewatering. Large larvae predominantly remained burrowed in all four rounds and did not experience any mortality. None of the large fish emerged for more than a single round, and emergence occurred only in the first and second rounds. Larvae emerged more quickly as the number of dewatering events increased. The mean time to emerge after the surface of the sediment in the tube was dewatered, combing all four groups, was 42 minutes (min) in round 1 (14 fish), 16 min in round 2 (5 fish), 11 min in round 3 (3 fish), and 8 minutes in round 4 (3 fish). When all groups and rounds of dewatering were combined, the overall mean time to emerge was 29 min (25 fish) and ranged from 1 min to 2 hours after the surface of the sediment was dewatered. Larvae burrowed deeper during the 1-in/h trials than the 16-in/h trials, and few fish were deeper than about 23 centimeters (cm). Large larvae burrowed deeper than small larvae. Small larvae were most concentrated from 0 to 7.6 cm (83.7 percent), and large fish were concentrated from 15.2 to 22.8 cm (43.3 percent). The second dewatering event resulted in greater mean burrowing depth than the first event, but trends after the second event were less clear. Larval size played a role in lamprey responses to dewatering, having a significant effect on emergence, movement rate, and vertical distribution. The sediment used for laboratory testing or occupied by lamprey in the field appears to affect lamprey response to dewatering and deserves greater attention in future studies. Larvae were more active in the dark, but darkness did not consistently provide better outcomes (e.g., more emergence or reduced stranding) compared to daylight. An improved understanding of the cues that prompt larvae to emerge from the sediment, combined with the ability to manage dewatering rates, would be useful to guide future dewatering events to minimize negative effects to lamprey.

Open-File Report↗