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At least 361 records · Page 20Linked to original sources
USGS2016

Circumpolar Biodiversity Monitoring Programme coastal biodiversity monitoring background paper

In 2014, the United States (U.S.) and Canada agreed to act as co-lead countries for the initial development of the Coastal Expert Monitoring Group (CEMG) as part of the Circumpolar Biodiversity Monitoring Program (CBMP, www. cbmp.is) under the Arctic Council’s Conservation of Arctic Flora and Fauna (CAFF, www.caff.is) working group. The CAFF Management Board approved Terms of Reference for the CEMG in the spring of 2014. The primary goal of the CEMG is to develop a long term, integrated, multi-disciplinary, circumpolar Arctic Coastal Biodiversity Monitoring Plan (the Coastal Plan) that relies on science and Traditional Knowledge, and has direct and relevant application for communities, industry, government decision makers, and other users. In addition to the monitoring plan, the CAFF working group has asked the CBMP, and thus the CEMG, to develop an implementation plan that identifies timeline, costs, organizational structure and partners. This background paper provides a platform for the guidance for the development of the Coastal Plan and is produced by the CEMG with assistance from a number of experts in multiple countries.

Report↗
USGS2013

A natural resource condition assessment for Sequoia and Kings Canyon National Parks: Appendix 14: plants of conservation concern

Sequoia and Kings Canyon National Parks are located in the California Floristic Province, which has been named one of world‘s hotspots of endemic biodiversity (Myers et al. 2000). The California Floristic Province is the largest and most important geographic floristic unit in California and extends from the Klamath Mountains of southwestern Oregon to the northwestern portion of Baja California (Hickman 1993). The Sierra Nevada, one of six regions that make up the California Floristic Province, covers nearly 20% of the land in California yet contains over 50% of its flora. Within the Sierra Nevada, the southern Sierra supports more Sierran endemic and rare plant taxa than the central and northern portions of the region (Shevock 1996). Sequoia and Kings Canyon National Parks (SEKI) encompass roughly 20% of the southern Sierra Nevada region. The parks overlap three floristic subregions (central Sierra Nevada High, southern Sierra Nevada High, and southern Sierra Nevada Foothills), and border the Great Basin Floristic Province. The parks support a rich and diverse vascular flora composed of over 1,560 taxa. Of these, 150 taxa are identified as having special status. The term special status is applied here to include taxa that are state or federally listed, rare in California, or at risk because they have a limited distribution. Only one species from these parks is listed under the state or federal Endangered Species Acts ( Carex tompkinsii , Tompkins‘ sedge, is listed as a rare species under the California Endangered Species Act), and one species is under review for federal endangered listing ( Pinus albicaulis , whitebark pine). However, an absence of threatened and endangered species recognized by Endangered Species Acts is not equivalent to an absence of species at risk. There are 83 plant taxa documented as occurring in SEKI that are considered imperiled or vulnerable in the state by the California Department of Fish and Game‘s California Natural Diversity Database (CNDDB 2010a). There are an additional 66 taxa not formally listed by CNDDB that are recognized as having special status because their distribution is restricted to the Sierra Nevada. Special status plants are distributed throughout the two parks and inhabit a wide range of environments along the length of the elevation gradient that characterizes these parks. Ideally, we would assess the condition (status and trends) of each of the taxa on the SEKI special status plant list, documenting current population sizes, demographic rates and demographic trends. We would also hope to quantify the effects of individual stressors on each species based on existing monitoring and research. However, no data are available for most of the species on the special status plant list. For those few species (12 herbaceous species and two tree species) for which we possess some change over time information, the data are not adequate to make a competent assessment. Note that we have not explored the tree demographic information in any detail, as is covered in the NRCA Intact Forest/Five Needle Pines and Sequoia chapters. In general, we are unable to present an ‗integrity‘ metric for special status species in the parks, since the data to quantify the condition of each species in such a manner is not available. In contrast, the park does possess substantial data describing biodiversity in the parks. Therefore, our analysis focuses on describing the distribution and rarity of special status plants within the parks, with a particular focus on assessing the spatial distribution of species richness. We hope that such information will prove useful to park managers in determining which areas in the parks merit the most attention (for example in developing monitoring protocols). We also assess potential vulnerability of special status species to the stressors chosen by the NRCA working group, using both park data and available literature. As a first step, we spent considerable effort updating and refining the criteria for the special status plant list, as this list defines which taxa are considered in our assessment. Observation data of these species was then compiled from all known sources in order to provide a comprehensive view of where special status plants have been documented and, ultimately, to enable the most informed determinations of areas in the parks that potentially support the highest number of rare and endemic taxa. These ‗hot spot‘ analyses are presented by geographic region, vegetation type and elevation. For these and other analyses presented in this report, we place more focus on summarizing findings for the herbaceous and shrub special status taxa than on special status trees. The trees which qualify as special status are the focus of other NRCA chapters, including Giant Sequoia and Intact Forests/Five-needle Pines. We do, however, present their mapped distributions and provide overviews of research related to the special status tree taxa in the Stressors section of this report.

California↗
USGS2009

Alaska Interagency Ecosystem Health Work Group

The Alaska Interagency Ecosystem Health Work Group is a community of practice that recognizes the interconnections between the health of ecosystems, wildlife, and humans and meets to facilitate the exchange of ideas, data, and research opportunities. Membership includes the Alaska Native Tribal Health Consortium, U.S. Geological Survey, Alaska Department of Environmental Conservation, Alaska Department of Health and Social Services, Centers for Disease Control and Prevention, U.S. Fish and Wildlife Service, Alaska Sea Life Center, U.S. Environmental Protection Agency, and Alaska Department of Fish and Game.

Fact Sheet↗
USGS2010

Social Values for Ecosystem Services (SolVES): using GIS to include social values information in ecosystem services assessments

Ecosystem services can be defined in various ways; simply put, they are the benefits provided by nature, which contribute to human well-being. These benefits can range from tangible products such as food and fresh water to cultural services such as recreation and esthetics. As the use of these benefits continues to increase, additional pressures are placed on the natural ecosystems providing them. This makes it all the more important when assessing possible tradeoffs among ecosystem services to consider the human attitudes and preferences that express underlying social values associated with their benefits. While some of these values can be accounted for through economic markets, other values can be more difficult to quantify, and attaching dollar amounts to them may not be very useful in all cases. Regardless of the processes or units used for quantifying such values, the ability to map them across the landscape and relate them to the ecosystem services to which they are attributed is necessary for effective assessments. To address some of the needs associated with quantifying and mapping social values for inclusion in ecosystem services assessments, scientists at the Rocky Mountain Geographic Science Center (RMGSC), in collaboration with Colorado State University, have developed a public domain tool, Social Values for Ecosystem Services (SolVES). SolVES is a geographic information system (GIS) application designed to use data from public attitude and preference surveys to assess, map, and quantify social values for ecosystem services. SolVES calculates and maps a 10-point Value Index representing the relative perceived social values of ecosystem services such as recreation and biodiversity for various groups of ecosystem stakeholders. SolVES output can also be used to identify and model relationships between social values and physical characteristics of the underlying landscape. These relationships can then be used to generate predicted Value Index maps for areas where survey data are not available. RMGSC will continue to develop more robust versions of SolVES by pursuing opportunities to work with land and resource managers as well as other researchers to apply SolVES to specific ecosystem management problems.

Fact Sheet↗
USGS2001

Preliminary evaluation of the importance of existing hydraulic-head observation locations to advective-transport predictions, Death Valley regional flow system, California and Nevada

When a model is calibrated by nonlinear regression, calculated diagnostic statistics and measures of uncertainty provide a wealth of information about many aspects of the system. This report presents a method of ranking the likely importance of existing observation locations using measures of prediction uncertainty. It is suggested that continued monitoring is warranted at more important locations, and unwarranted or less warranted at less important locations. The report develops the methodology and then demonstrates it using the hydraulic-head observation locations of a three-layer model of the Death Valley regional flow system. The predictions of interest are subsurface transport from beneath Yucca Mountain and 14 Underground Test Areas. The advective component of transport is considered because it is the component most affected by the system dynamics represented by the scale model being used. The problem is addressed using the capabilities of the U.S. Geological Survey computer program MODFLOW-2000, with its ADVective-Travel Observation (ADV) Package, and an additional computer program developed for this work. The methods presented in this report are used in three ways. (1) The ratings for individual observations are obtained by manipulating the measures of prediction uncertainty, and do not involve recalibrating the model. In this analysis, observation locations are each omitted individually and the resulting increase in uncertainty in the predictions is calculated. The uncertainty is quantified as standard deviations on the simulated advective transport. The increase in uncertainty is quantified as the percent increase in the standard deviations caused by omitting the one observation location from the calculation of standard deviations. In general, observation locations associated with larger increases are rated as more important. (2) Ratings for largely geographically based groups are obtained using a straightforward extension of the method used for individual observation locations. This analysis is needed where observations are clustered to determine whether the area is important to the predictions of interest. (3) Finally, the method is used to evaluate omitting a set of 100 observation locations. The locations were selected because they had low individual ratings and were not one of the few locations at which hydraulic heads from deep in the system were measured. The major results of the three analyses, when applied to the three-layer DVRFS ground-water flow system, are described in the following paragraphs. The discussion is labeled using the numbers 1 to 3 to clearly relate it to the three ways the method is used, as listed above. (1) The individual observation location analysis indicates that three observation locations are most important. They are located in Emigrant Valley, Oasis Valley, and Beatty. Of importance is that these and other observations shown to be important by this analysis are far from the travel paths considered. This displays the importance of the regional setting within which the transport occurs, the importance of including some sites throughout the area in the monitoring network, and the importance of including sites in these areas in particular. The method considered in this report indicates that the 19 observation locations that reflect hydraulic heads deeper in the system (in model layers 1, 2, and 3) are not very important. This appears to be because the locations of these observations are in the vicinity of shallow observation locations that also generally are rated as low importance, and because the model layers are hydraulically well connected vertically. The value of deep observations to testing conceptual models, however, is stressed. As a result, the deep observations are rated higher than is consistent with the results of the analysis presented, and none of these observations are omitted in the scenario discussed under (3) below. (2) The geographic grouping of th

California, Nevada↗
USGS2020

2023 Coastal master plan: Model improvement plan, ICM-wetlands, vegetation, and soil

As part of the model improvement effort for the 2023 Coastal Master Plan, the wetland processes captured by the morphology and vegetation models used during previous master plans were reevaluated to assess how Integrated Compartment Model (ICM) subroutines could be improved. This process considered technical reviews, comments, and suggested improvements provided by model developers, advisory groups, and other experts during previous master plan cycles. The availability of new data and information that could be used to make model improvements was also considered. In many cases, the team considered and tested multiple options or approaches. As a result of this effort, recommended improvements are provided here. The improvements recommended to be included in the 2023 Coastal Master Plan include: adjusting marsh collapse thresholds, refining organic matter accretion calculations, developing an unstructured grid for modeling vegetation, improving flotant marsh and forested wetlands algorithms, creating and applying an updated map of existing vegetation, adjusting model code, and updating the submerged aquatic vegetation (SAV) module. This report describes the team’s work through a series of 7 distinct activities to identify and test options for model improvements to ensure the updated ICM used for the 2023 Coastal Master Plan appropriately captures ecological and morphological processes observed in Coastal Louisiana. As appropriate, relevant literature and data are discussed. Test runs to evaluate how changes influence model outputs are also documented. A final list of recommended updates, taking into account consideration of all options and results from test runs, is summarized at the end of the report. A later report will describe the final ICM-LAVegMod and ICM-Morph subroutines for the 2023 Coastal Master Plan, detailing the updates that have been incorporated.

Louisiana↗
USGS2006

Vascular Plant and Vertebrate Inventory of Casa Grande Ruins National Monument

Executive Summary This report summarizes results of the first comprehensive biological inventory of Casa Grande Ruins National Monument (NM) in southern Arizona. Surveys at the monument were part of a larger effort to inventory vascular plants and vertebrates in eight National Park Service units in Arizona and New Mexico. In 2001 and 2002 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at Casa Grande Ruins NM to document the presence, and in some cases relative abundance, of species. By using repeatable study designs and standardized field techniques, which included quantified survey effort, we produced inventories that can serve as the basis for a biological monitoring program. Of the National Park Service units in the region, no other has experienced as much recent ecological change as Casa Grande Ruins NM. Once situated in a large and biologically diverse mesquite bosque near the perennially flowing Gila River, the monument is now a patch of sparse desert vegetation surrounded by urban and commercial development that is rapidly replacing agriculture as the dominant land use in the area. Roads, highways, and canals surround the monument. Development, and its associated impacts, has important implications for the plants and animals that live in the monument. The plant species list is small and the distribution and number of non-native plants appears to be increasing. Terrestrial vertebrates are also being impacted by the changing landscape, which is increasing the isolation of these populations from nearby natural areas and thereby reducing the number of species at the monument. These observations are alarming and are based on our review of previous studies, our research in the monument, and our knowledge of the biogeography and ecology of the Sonoran Desert. Together, these data suggest that the monument has lost a significant portion of its historic complement of species and these changes will likely intensify as urbanization continues. Despite isolation of the monument from nearby natural areas, we recorded noteworthy species or observations for all taxonomic groups: * Plants: night-blooming cereus * Amphibians: high abundance of Couch's spadefoot toads * Reptiles: high abundance of long-nosed snakes * Birds: 10 species of diurnal raptors including 4 species of falcons * Mammals: American badger This study is a first step in the process of compiling information about the biological resources of Casa Grande Ruins NM and surrounding areas. We recommend additional inventory and research studies, and we identify aspects of our effort that could be improved upon through application of new techniques or by extending the temporal (and possibly spatial) scope of our work.

Open-File Report↗
USGS2018

Recommended nomenclature for zeolite minerals: Report of the subcommittee on zeolites of the International Mineralogical Association, Commission of New Minerals and Mineral Names

This report embodies recommendations on zeolite nomenclature approved by the International Mineralogical Association Commission of New Minerals and Mineral Names. In a working definition of a zeolite mineral used for review, interrupted tetrahedral framework structures are accepted where other zeolitic properties prevail, and complete substitution by elements other than Si and Al is allowed. Separate species are recognized in topologically distinctive compositional series in which different extra-framework cations are the most abundance in atomic proportions. To name these, the appropriate chemical symbol is attached by a hyphen to the series name as a suffix except for the names harmotome, pollucite and wairakite in the phillipsite and analcime series. Differences in space-group symmetry and in order-disorder relationships in zeolites having the same topologically distinctive framework do not in general provide adequate grounds for recognition of separate species. Zeolite species are not to be distinguished solely on Si:Al ratio except for heulandite (Si:Al < 4.0) and clinoptilolite ( Si : Al ⩾ 4.0 ). Dehydration, partial hydration, and over-hydration are not sufficient grounds for the recognition of separate species of zeolites. Use of the term 'ideal formula' should be avoided in referring to a simplified or averaged formula of a zeolite. Newly recognized species in compositional series are as follows: brewsterite-Sr.-Ba: chabazite-Ca.-Na.-K; clinoptilolite-K, -Na, -Ca: dachiardite-Ca, -Na; erionite-K, -Ca: faujasite-Na, -Ca, -Na: paulingite-K. -Ca; phillipsite-Na, -Ca, -Ka; stilbite-Ca, -Na. Key references, type locality, origin of name, chemical data. IZA structure-type symbols, space-group symmetry; unit-cell dimensions, and comments on structure are listed for 13 compositional series, 82 accepted zeolite mineral species, and three of doubtful status. Herschelite, leonhardite, svetlozarite, and wellsite are discredited as mineral species names. Obsolete and discredited names are listed.

Mineralogical Magazine↗
USGS2011

Upper Colorado River Basin Climate Effects Network

The Upper Colorado River Basin (UCRB) Climate Effects Network (CEN) is a science team established to provide information to assist land managers in future decision making processes by providing a better understanding of how future climate change, land use, invasive species, altered fire cycles, human systems, and the interactions among these factors will affect ecosystems and the services they provide to human communities. The goals of this group are to (1) identify science needs and provide tools to assist land managers in addressing these needs, (2) provide a Web site where users can access information pertinent to this region, and (3) provide managers technical assistance when needed. Answers to the team's working science questions are intended to address how interactions among climate change, land use, and management practices may affect key aspects of water availability, ecosystem changes, and societal needs within the UCRB.

Fact Sheet↗
USGS2018

Hawai‘i and U.S.-Affiliated Pacific Islands

The U.S. Pacific Islands are culturally and environmentally diverse, treasured by the 1.9 million people who call them home. Pacific islands are particularly vulnerable to climate change impacts due to their exposure and isolation, small size, low elevation (in the case of atolls), and concentration of infrastructure and economy along the coasts. A prevalent cause of year-to-year changes in climate patterns around the globe and in the Pacific Islands region is the El Niño –Southern Oscillation (ENSO). The El Niño and La Niña phases of ENSO can dramatically affect precipitation, air and ocean temperature, sea surface height, storminess, wave size, and trade winds. It is unknown exactly how the timing and intensity of ENSO will continue to change in the coming decades, but recent climate model results suggest a doubling in frequency of both El Niño and La Niña extremes in this century as compared to the 20th century under scenarios with more warming, including the higher scenario (RCP8.5). On islands, all natural sources of freshwater come from rainfall received within their limited land areas. Severe droughts are common, making water shortage one of the most important climate-related risks in the region. As temperature continues to rise and cloud cover decreases in some areas, evaporation is expected to increase, causing both reduced water supply and higher water demand. Streamflow in Hawai‘i has declined over approximately the past 100 years, consistent with observed decreases in rainfall. The impacts of sea level rise in the Pacific include coastal erosion, episodic flooding, permanent inundation, heightened exposure to marine hazards, and saltwater intrusion to surface water and groundwater systems. Sea level rise will disproportionately affect the tropical Pacific and potentially exceed the global average. Invasive species , landscape change, habitat alteration, and reduced resilience have resulted in extinctions and diminished ecosystem function. Inundation of atolls in the coming decades is projected to impact existing on-island ecosystems. Wildlife that relies on coastal habitats will likely also be severely impacted. In Hawaiʻi, coral reefs contribute an estimated $477 million to the local economy every year. Under projected warming of approximately 0.5°F per decade, all nearshore coral reefs in the Hawai‘i and Pacific Islands region will experience annual bleaching before 2050. An ecosystem -based approach to international management of open ocean fisheries in the Pacific that incorporates climate-informed catch limits is expected to produce more realistic future harvest levels and enhance ecosystem resilience. Indigenous communities of the Pacific derive their sense of identity from the islands. Emerging issues for Indigenous communities of the Pacific include the resilience of marine-managed areas and climate-induced human migration from their traditional lands. The rich body of traditional knowledge is place-based and localized and is useful in adaptation planning because it builds on intergenerational sharing of observations. Documenting the kinds of governance structures or decision-making hierarchies created for management of these lands and waters is also important as a learning tool that can be shared with other island communities. Across the region, groups are coming together to minimize damage and disruption from coastal flooding and inundation as well as other climate-related impacts. Social cohesion is already strong in many communities, making it possible to work together to take action. Early intervention can lower economic, environmental, social, and cultural costs and reduce or prevent conflict and displacement from ancestral land and resources.

Report↗
USGS1957

Reconnaissance for radioactive materials in the southern part of Brazil

During 1954-1956 a reconnaissance for radioactive minerals was made with carborne, airborne and handborne scintillation equipment in the southern Brazilian states of Rio de Janeiro, Sao Paulo, Parana, Santa Catarina and Rio Grande do Sul. During the traverse covering more than 5,000 kilometers the authors checked the radioactivity of Precambrian igneous and metamorphic rocks, Paleozoic, Mesozoic and Cenozoic sedimentary rocks, and Mesozoic alkalic intrusive and basaltic extrusive rocks. The 22 samples collected contained from 0.003 to 0.029 percent equivalent uranium oxide and from 0.10 to 0.91 percent equivalent thorimn; two samples were taken from radioactive pegmati tes for mineralogic studies. None of the localities is at present a commercial source of uranium or thorium; however, additional work should be done near the alkalic stock at Lages in the State of Santa Catarina and at the Passo das Tropas fossil plant locality near Santa Maria in the state of Rio Grande do Sul. Near Lages highly altered alkalic rock from a dike contained 0.026 percent uranium oxide. At Passo das Tropas highly altered, limonite-impregnated sandstone from the Rio do Rasto group of sedimentary rocks contained 0.029 percent uranium oxide.

Trace Elements Memorandum↗
USGS2021

Connectivity and climate change toolkit

The Association of Fish and Wildlife Agencies’ Climate Adaptation Committee charged a small working group in September of 2019 to develop a toolkit focused on climate-informed landscape connectivity. The purpose is to provide state fish and wildlife agency planners and managers with the information necessary to ensure climate considerations are being accounted for and incorporated in the planning and implementation of terrestrial and aquatic connectivity initiatives.

Report↗
USGS2026

Lithium brine potential of North Dakota: Results from the 2025 sampling program

Lithium (Li), classified as a critical mineral and key in energy storage applications because of its high energy density, faces unprecedented demand. This has driven interest in unconventional sources of Li, especially brines from sedimentary basins. Accordingly, the spatial distribution of basinal brinehosted Li resources across North America is becoming better defined, including the Williston Basin underlying Saskatchewan, Canada. This has led to growing investment and exploration by industry throughout the 2020s; however, despite this interest, the Li potential of basinal brines of the Williston Basin in North Dakota remain underexplored. This work presents the results from the 2025 joint brine sampling campaign between the North Dakota Geological Survey, the United States Geological Survey (USGS), and The University of Texas at Austin. Twenty-seven fluid samples were collected from producing oil and water source wells from eight stratigraphic intervals across western North Dakota and analyzed for major cation and anion concentrations. Similar to southeastern Saskatchewan, the highest Li concentrations were identified in the Devonian Duperow Formation, with concentrations up to 179 mg/L being observed in a well commingled between the Duperow and Red River Formations. Some samples from the overlying Birdbear Formation exceeded 75 mg/L, whereas Li concentrations were lower in the Madison Group (33-44 mg/L) and the Three Forks (50 mg/L), Dawson Bay (43 mg/L), Winnipegosis (23 mg/L), and Red River (40.0 mg/L) Formations. This work indicates Li resource potential exists across the Williston Basin and advances our understanding of the Li distribution in basinal brines which could provide a new domestic source of this critical mineral.

North Dakota↗
USGS1997

Recommended nomenclature for zeolite minerals: report of the subcommittee on zeolites of the International Mineralogical Association, Commission on new Minerals and Mineral names

This report embodies recommendations on zeolite nomenclature approved by the International Mineralogical Association, Commission on New Minerals and Mineral Names. In a working definition of a zeolite mineral used for this review, structures containing an interrupted framework of tetrahedra are accepted where other zeolitic properties prevail, and complete substitution by elements other than Si and Al is allowed. Separate species are recognized in topologically distinctive compositional series in which different extra-framework cations are the most abundant in atomic proportions. To name these, the appropriate chemicalsymbol is attached by a hyphen to the series name as a suffix, except for the names harmotome, pollucite and wairakite in the phillipsite and analcime series. Differences in space-group symmetry and in order-disorder relationships in zeolites having the same topologically distinctive framework do not in general provide adequate grounds for recognition of separate species. Zeolite species are not to be distinguished solely on the ratio Si:Al except for heulandite (Si:Al < 4.0) and clinoptilolite (Si:Al ??? 4.0). Dehydration, partial hydration, and overhydration are not sufficient grounds for the recognition of separate species of zeolites. Use of the term 'ideal formula' should be avoided in referring to a simplified or averaged formula of a zeolite. newly recognized species in compositional series are as follows: brewsterite-Sr, -Ba, chabazite-Ca, -Na, -K, clinoptilolite-K, -Na, -Ca, dachiardite-Ca, -Na, erionite-Na, erionite-Na, -K, -Ca, faujasite-Na, -Ca, -Mg, ferrierite-Mg, -K, -Na, gmelinite-Na, -Ca, -K, heulandite-Ca, -Na, -K, -Sr, levyne-Ca, -Na, paulingite-K, -Ca, phillipsite-Na, -Ca, -K, and stilbite-Ca, -Na. Key references, type locality, origin of name, chemical data, IZA structure-type symbols, space-group symmetry, unit-cell dimensions, and comments on structure are listed for 13 compositional series, 82 accepted zeolite mineral species, and three of doubtful status. Herschelite, leonhardite, dvetlozarite, and wellsite are discredited as mineral species names. Obsolete and discredited names are listed.

Canadian Mineralogist↗
USGS2023

2023 PyLith Hackathon report

The 3rd Pylith Hackathon was held June 12–17, 2023, at the Colorado School of Mines in Golden, Colorado with funding from the Computational Infrastructure for Geodynamics (CIG). The hackathon involved 17 participants working on 5 different projects to implement new features and create new examples for the PyLith crustal deformation modeling software. The projects included (1) spontaneous rupture using fault friction, (2) extending the poroelasticity implementation, (3) developing 2D and 3D examples involving strike-slip faults, (4) integrating PyLith with the cascading adaptive transitional metropolis in parallel (CATMIP) Bayesian inversion framework for use in studies inverting for static fault slip, and (5) adding self-gravitation using the current multiphysics formulation in PyLith. Participants learned how to navigate the PyLith code base, implement point-wise functions for governing equations and bulk and fault rheologies using the finite-element method, extend the code using the modular, object-oriented design, write examples that demonstrate how to use the new features in PyLith simulations, and implement method of manufactured solutions tests and full-scale tests. The PyLith development team benefitted from discussions with the other participants (contributors) about the technical aspects of the various projects as well as general discussions about PyLith design. The in-person format and 6-day duration allowed the groups to make significant progress. Participants appreciated the project-based organization of the hackathon and recommended that future hackathons include online meetings of the various projects before the in-person gathering to self-organize and prepare. Sarah Minson (remote) provided technical advice on the use of the CATMIP Bayesian inversion framework, and this type of participation could be expanded to allow additional technical presentations and advice on various topics in future hackathons.

Report↗
USGS2022

Growth and survival rates of dispersing free embryos and settled larvae of pallid sturgeon (Scaphirhynchus albus) in the Missouri River, Montana and North Dakota

We released nearly 1.0 million 1-day post-hatch (dph) and 5-dph pallid sturgeon ( Scaphirhynchus albus ) free embryos in the Missouri River on 1 July 2019 and sequentially captured survivors at multiple sites through a 240-km river reach to quantify daily growth and survival rates during the early life stages. Genetic analysis was used to assign captured fish to released family lots and known ages. Growth rate was similar (0.74–0.75 mm day −1 ) between the 1- and 5-dph age groups during the 3–4-day dispersal period when water temperature averaged 16.8 °C. Daily survival rate was 0.64 during 1–4 dph for the original 1-dph age group and 0.80 during 5–7 dph for the original 5-dph age group. Total survival during free embryo dispersal (hatch to 9 dph) was estimated as 0.0437. The transition from dispersing as free embryos to settling as benthic larvae was verified for fish originally released as 5 dph. Growth of settled larvae was quantified with a Gompertz model through 75 dph (9 September; 112 mm) when water temperature was 18.8–21.0 °C in the rearing areas. Settled larvae had an estimated daily survival rate of 0.96, and estimated total survival during 9–75 dph was 0.0714. This study provides the first empirical survival estimates for pallid sturgeon early life stages in natural settings and is one of few studies reporting similar information for other sturgeon species. Applications of this work extend to pallid sturgeon restoration programs where population models are being developed to predict recruitment potential and population responses to river management alternatives.

Montana, North Dakota↗
USGS2012

Concurrent speciation in the eastern woodland salamanders (Genus Plethodon):DNA sequences of the complete albumin nuclear and partialmitochondrial 12s genes

Salamanders of the North American plethodontid genus Plethodon are important model organisms in a variety of studies that depend on a phylogenetic framework (e.g., chemical communication, ecological competition, life histories, hybridization, and speciation), and consequently their systematics has been intensively investigated over several decades. Nevertheless, we lack a synthesis of relationships among the species. In the analyses reported here we use new DNA sequence data from the complete nuclear albumin gene (1818 bp) and the 12s mitochondrial gene (355 bp), as well as published data for four other genes (Wiens et al., 2006), up to a total of 6989 bp, to infer relationships. We relate these results to past systematic work based on morphology, allozymes, and DNA sequences. Although basal relationships show a strong consensus across studies, many terminal relationships remain in flux despite substantial sequencing and other molecular and morphological studies. This systematic instability appears to be a consequence of contemporaneous bursts of speciation in the late Miocene and Pliocene, yielding many closely related extant species in each of the four eastern species groups. Therefore we conclude that many relationships are likely to remain poorly resolved in the face of additional sequencing efforts. On the other hand, the current classification of the 45 eastern species into four species groups is supported. The Plethodon cinereus group (10 species) is the sister group to the clade comprising the other three groups, but these latter groups (Plethodon glutinosus [28 species], Plethodon welleri [5 species], and Plethodon wehrlei [2 species]) probably diverged from each other at approximately the same time.

Molecular Phylogenetics and Evolution↗
USGS2011

Ocean acidification postcards

The U.S. Geological Survey (USGS) is conducting research on ocean acidification in polar, temperate, subtropical, and tropical regions including the Arctic, West Florida Shelf, and the Caribbean. Project activities include field assessment, experimental laboratory studies, and evaluation of existing data. The USGS is participating in international and interagency working groups to develop research strategies to increase understanding of the global implications of ocean acidification. Research strategies include new approaches for seawater chemistry observation and modeling, assessment of physiological effects on organisms, changes in marine ecosystem structure, new technologies, and information resources. These postcards highlight ongoing USGS research efforts in ocean acidification and carbon cycling in marine and coastal ecosystems in three different regions: polar, temperate, and tropical. To learn more about ocean acidification visit: http://coastal.er.usgs.gov/ocean-acidification/.

General Information Product↗