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USGS2019

Seasonal, tidal, and geomorphic controls on sediment export to Amazon River tidal floodplains

Mainstem–floodplain material exchange in the tidal freshwater reach of ma jor rivers may lead to significant sequestration of riverine sediment, but this zone remains understudied compared to adjacent fluvial and marine environ ments. This knowledge gap prompts investigation of floodplain-incising tidalchannels found along the banks of tidal rivers and their role in facilitating water and suspended-sediment fluxes between mainstem and floodplain. To evaluate this role, and how it evolves along the tidal river and with time, we measured water level, flow velocity, temperature, and suspended-sediment concentration (SSC) in four tidal channels along the tidal Amazon River, Brazil. Eleven deployments were made during low, rising, high, and falling seasonal Amazon discharge. Generally, channels export high-SSC water from the mainstem to the tidal floodplain on flood tides and transfer low-SSC water back to the mainstem on ebbs. Along the length of the tidal river, the interaction between tidal and seasonal water-level variations and channel–floodplain morphology is a primary control on tidal-channel sediment dynamics. Close to the river mouth, where tides are large, this interaction produces transient flow features and current induced sediment resuspension, but the importance of these processes decreases with distance upstream. Although the magnitude of the exchange of water and sediment between mainstem and floodplain via tidal channels is a small percentage of the total mainstem discharge in this large tidal-river system, tidal channels are important conduits for material flux between these two environments. This flux is critical to resisting floodplain submergence during times of rising sea level.

Amazon River↗

USGS2013

Relaxing the closure assumption in single-season occupancy models: staggered arrival and departure times

Occupancy statistical models that account for imperfect detection have proved very useful in several areas of ecology, including species distribution and spatial dynamics, disease ecology, and ecological responses to climate change. These models are based on the collection of multiple samples at each of a number of sites within a given season, during which it is assumed the species is either absent or present and available for detection while each sample is taken. However, for some species, individuals are only present or available for detection seasonally. We present a statistical model that relaxes the closure assumption within a season by permitting staggered entry and exit times for the species of interest at each site. Based on simulation, our open model eliminates bias in occupancy estimators and in some cases increases precision. The power to detect the violation of closure is high if detection probability is reasonably high. In addition to providing more robust estimation of occupancy, this model permits comparison of phenology across sites, species, or years, by modeling variation in arrival or departure probabilities. In a comparison of four species of amphibians in Maryland we found that two toad species arrived at breeding sites later in the season than a salamander and frog species, and departed from sites earlier.

Ecology↗

USGS2011

Coherence of river and ocean conditions along the US West Coast during storms

The majority of water and sediment discharge from the small, mountainous watersheds of the US West Coast occurs during and immediately following winter storms. The physical conditions (waves, currents, and winds) within and acting upon the proximal coastal ocean during these winter storms strongly influence dispersal patterns. We examined this river–ocean temporal coherence for four coastal river–shelf systems of the US West Coast (Umpqua, Eel, Salinas, and Santa Clara) to evaluate whether specific ocean conditions occur during floods that may influence coastal dispersal of sediment. Eleven years of corresponding river discharge, wind, and wave data were obtained for each river–shelf system from USGS and NOAA historical records, and each record was evaluated for seasonal and event-based patterns. Because near-bed shear stresses due to waves influence sediment resuspension and transport, we used spectral wave data to compute and evaluate wave-generated bottom-orbital velocities. The highest values of wave energy and discharge for all four systems were consistently observed between October 15 and March 15, and there were strong latitudinal patterns observed in these data with lower discharge and wave energies in the southernmost systems. During floods we observed patterns of river–ocean coherence that differed from the overall seasonal patterns. For example, downwelling winds generally prevailed during floods in the northern two systems (Umpqua and Eel), whereas winds in the southern systems (Salinas and Santa Clara) were generally downwelling before peak discharge and upwelling after peak discharge. Winds not associated with floods were generally upwelling on all four river–shelf systems. Although there are seasonal variations in river–ocean coherence, waves generally led floods in the three northern systems, while they lagged floods in the Santa Clara. Combined, these observations suggest that there are consistent river–ocean coherence patterns along the US West Coast during winter storms and that these patterns vary substantially with latitude. These results should assist with future evaluations of flood plume formation and sediment fate along this coast.

California, Oregon↗

USGS1975

Progress report on the water resources investigation of Martin County, Florida

The base of the shallow aquifer ranges from 125 feet (38 m) below sea level in the northwest part of Martin County to about 280 feet (85.3 m) below sea level in the southeast part of the county. Test holes also indicate a thick, highly permeable zone in the east part of the county which becomes thinner and interlaced with zones of lower permeability in the west part. Water levels decline about 2 to 5 feet (0.6 to 1.5 m) during the dry season (October 1973 to May 1974) in most areas of Martin County. Within the area influenced by the pumping of Stuart's public supply wells, water level declined 6 feet (1.8 m) between October 1973 and May 1974. Water levels during January - May 1974 in this area were 3 to 6 feet (0.0 to 1.8 m) lower than they were in January - May 1965. This difference was due to a three-fold increase in pumpage (0.8 to 2 mgd) from 1965 to 1974. Chloride concentrations in four salt water monitoring wells around the Stuart well field ranged from 35 to 45 mg/1 during the rainy season of 1973. No appreciative increase in chlorides was found by the end of the next dry season. Water from five surface water sites had higher concentrations of phosphorus than water found in a typical urban area in Fort Lauderdale. Water from seven sites contained concentrations of nitrogen less than the typical rural site average. Expansion of the test drilling program, observation of salt-water intrusion, water-level monitoring and continued nutrient sampling are planned for future study. An interpretative report will be prepared at the end of this investigation.

Florida↗

USGS2013

Snake River fall Chinook salmon life history investigations: Annual report 2011 (April 2011 - March 2012)

Executive Summary Chapter One – This chapter was published in the Transactions of the American Fisheries Society in 2012. We conducted a three-year radiotelemetry study in the lower Snake River to answer the questions: do fall Chinook salmon juveniles pass dams during winter when bypass systems and structures designed to prevent mortality are not operated; does downstream movement rate vary annually, seasonally, and from reservoir to reservoir; and, what are some of the factors that contribute to annual, seasonal, and spatial variation in downstream movement rate? Fall Chinook salmon juveniles moved downstream up to 169 km and fast enough (7.5 km/d) such that large percentages (up to 93%) of the fish passed one or more dams during winter. Mean downstream movement rate varied annually (9.2-11.3 km/d), increased from winter (7.5 km/d) to spring (16.4 km/d), and increased (6.9-16.8 km/d) as fish moved downstream from reservoir to reservoir. Fish condition factor at tagging explained some of the annual variation ( P ≤ 0.01) in downstream movement rate, whereas water particle velocity ( P ≤0.0001) and temperature ( P ≤0.0001) explained portions of the seasonal variation. An increase in migrational disposition as fish moved downstream helped explain the spatial variation ( P =0.05-0.07). The potential cost of winter movement might be reduced survival due to turbine passage when the bypass systems and spillway passage structures are not operated. Efforts to understand and increase passage survival of winter migrants in large impoundments might help to rehabilitate some imperiled anadromous salmonid populations. Chapter Two – Natural juvenile fall Chinook salmon in the Snake and Clearwater rivers exhibit two life history strategies. “Ocean-type” fish migrate out to the ocean in their first summer of life as subyearlings, but “reservoir-type” fish delay seaward migration during the summer, and some overwinter in reservoirs before continuing their migration the following spring as yearlings. Earlier emerging fish produced in the Snake River tend to adopt the ocean-type life history whereas many of the later emerging fish from the Clearwater River tend to adopt the reservoirtype life history. The underlying cause of the reservoir-type life history is poorly understood, but we believe there may be link to physiological development. We used traditional markers of the parr-smolt transformation (smoltification), including gill Na + /K + -ATPase activity and thyroid hormone levels, along with gene expression microarrays to assess the development of ocean-type juvenile fall Chinook salmon and then compared it to that of juvenile fall Chinook salmon from the Clearwater River. We showed that parr in the Snake River are physiologically distinct from actively-migrating smolts but smolts migrating early and late in the summer and fall are physiologically similar. Juvenile fall Chinook salmon collected from the Clearwater River were similar in size to early-migrating smolts in the Snake River but were most physiologically similar to Snake River parr. Genes differentially expressed between Snake River parr and smolts and between fish from the Clearwater River and smolts from the Snake River were involved in the cell cycle, steroid metabolism and other metabolic pathways, and DNA repair and packaging. Many of the genes differentially expressed in these comparisons had expression patterns that correlated with gill Na + /K + -ATPase activity, suggesting that they were related to smoltification and migration status. Chapter Three – Natural subyearlings produced in the Clearwater River are exposed to cool (~10-12°C) temperatures when water is released from Dworshak Reservoir for summer flow augmentation. Total dissolved gas (TDG) levels range from 100-110% in the lower Clearwater iv River. When fish move into the Snake River, they encounter temperatures up to 24°C at the surface which have the potential to incur gas bubble disease (GBD) in fish as dissolved gases in their bodies expand under warmer temperatures. This may result in both direct and indirect mortality, but this situation has been little studied. We conducted laboratory experiments to examine subyearling mortality rates and incidence and severity of GBD in fish that were moved between waters that varied in TDG and temperature. Fish experienced significant mortality only at temperatures of 25°C, which increased with exposure time. However there was no significance difference in mortality between fish acclimated to 100% TDG and 110% TDG. Fish that died did show signs of GBD. Generally, signs of GBD such as bubbles in the lateral line and unpaired fins were higher in fish acclimated at 110% TDG than in fish acclimated at 100% TDG, but there were few trends related to exposure temperature. Field measurements of TDG showed that TDG ranged from about 100% to 122.5% at some locations. Generally, TDG fluctuated daily, up to 8% during August and early September, and was highest late in the afternoon and lowest in the early morning. Laboratory results and field monitoring demonstrated that emigrating juvenile salmon can potentially be at risk from elevated temperatures, TDG, and GBD albeit to an unknown extent, which may increase their vulnerability to predation. Chapter Four – We conducted monthly beam trawling in Lower Granite and Little Goose reservoirs to describe the seasonal abundance of benthic epifauna that are potentially important as prey to juvenile fall Chinook salmon. The predominant taxa collected were Siberian prawns, the opossum shrimp Neomysis mercedis , and the amphipod Corophium sp. Prawns were relatively abundant at shallow sites in both reservoirs in June, but were more abundant at deep sites in lower and middle reservoir reaches in autumn. Prawn densities were commonly <0.2/m2. Prawn length-frequency data indicated that there were at least two size classes. Juvenile prawns present in shallow water more often than adult prawns, which were generally only found in deep water by autumn. Ovigerous prawns had an average of 171 eggs, which represented about 11.5% of their body weight. Limited diet analyses suggested that prawns consumed Corophium , Neomysis , and aquatic insects. Neomysis dominated all catches both in terms of abundance and biomass, and they were more abundant in Lower Granite compared to Little Goose reservoir. Neomysis were more abundant at shallow sites than at deep sites. Corophium were present in our collections but were never abundant, probably because our trawl was not effective at capturing them. The caloric content of prawns (4,782 Kcal), Neomysis (4,962 Kcal), and Corophium (4,926 Kcal) indicates that these prey would be energetically profitable for juvenile salmon. Subyearling fall Chinook salmon prey heavily on Neomysis and Corophium at times, but the importance of prawns as prey is uncertain.

Oregon, Washington↗

USGS2013

Evapotranspiration from marsh and open-water sites at Upper Klamath Lake, Oregon, 2008--2010

Water allocation in the Upper Klamath Basin has become difficult in recent years due to the increase in occurrence of drought coupled with continued high water demand. Upper Klamath Lake is a central component of water distribution, supplying water downstream to the Klamath River, supplying water for irrigation diversions, and providing habitat for various species within the lake and surrounding wetlands. Evapotranspiration (ET) is a major component of the hydrologic budget of the lake and wetlands, and yet estimates of ET have been elusive—quantified only as part of a lumped term including other substantial water-budget components. To improve understanding of ET losses from the lake and wetlands, measurements of ET were made from May 2008 through September 2010. The eddy-covariance method was used to monitor ET at two wetland sites continuously during this study period and the Bowen-ratio energy-balance method was used to monitor open-water lake evaporation at two sites during the warmer months of the 3 study years. Vegetation at one wetland site (the bulrush site) consists of a virtual monoculture of hardstem bulrush (formerly Scirpus acutus, now Schoenoplectus acutus), and at the other site (the mixed site) consists of a mix of about 70 percent bulrush, 15 percent cattail (Typha latifolia), and 15 percent wocus (Nuphar polysepalum). Measured ET at these two sites was very similar (means were ±2.5 percent) and mean wetland ET is computed as a 70 to 30 percent weighted average of the bulrush and mixed sites, respectively, based on community-type distribution estimated from satellite imagery. Biweekly means of wetland ET typically vary from maximum values of around 6 to 7 millimeters per day during midsummer, to minimum values of less than 1 mm/d during midwinter. This strong annual signal primarily reflects life-cycle changes in the wetland vegetation, and the annual variation of radiative input to the surface and resulting temperature. The perennial vegetation begins each growing season submerged, emerges from the dead litter mat around late May or early June, reaches a maximum height of about 2.2 meters (m) during summer, senesces in October, and subsequently lodges over, contributing to the dead litter mat from previous years. Hydroperiods last about 5 to 6 months, typically beginning in January or February and ending in July or August, and have a minor influence on the annual ET cycle. These hydroperiods result from lake levels that typically vary about 1.3 m, from around 0.6 to 0.9 m above the wetland surface, to around 0.4 to 0.7 m below the wetland surface. An estimate of 3-year annual wetland ET, made by substituting early- and late-season data measured during 2009 for the missing periods in early 2008 and late 2010, is 0.938 meter per year (m/yr). Daily values of alfalfa-based reference ET (ET r ) were retrieved from the Bureau of Reclamation AgriMet Web site (http://www.usbr.gov/pn/agrimet/index.html) and are aggregated into biweekly, annual, and 3-year values (for consistency, the 3-year values are also computed using substitute data from 2009 for early 2008 and late 2010). These ET r values are computed from weather data measured at the nearby Agency Lake weather station (AGKO), and are based on the assumption that the alfalfa crop is green and vigorous year-round. The 3-year value of ET r is 1.145 m/yr, about 22 percent greater than wetland ET. A comparison of 2008–2010 alfalfa and pasture growing season actual ET with wetland ET is made using data from the more distant Klamath Falls AgriMet weather station (KFLO) because actual alfalfa and pasture ET are not computed for the AGKO site. During the 190-day average alfalfa growing season, wetland ET (0.779 m) is about 7 percent less than alfalfa ET (0.838 m). During the 195-day average pasture growing season, wetland ET (0.789 m) is about 18 percent greater than pasture ET (0.671 m). Assuming alfalfa and pasture ET are equal to wetland ET during the non-growing season, annual estimates become 0.997 m, 0.938 m, and 0.820 m from alfalfa, wetland, and pasture, respectively. Wetland crop coefficients (K c =ET/ET r ) are computed at daily, biweekly, and annual time steps. Approximate formulas are given to estimate daily values of growing season Kc, thereby allowing computation of daily growing season ET using ET r from the AGKO weather station. Biweekly values of growing season Kc are computed from ensemble average values of ET and ET r during the 3 study period growing seasons, and a single, mean Kc is computed for the non-growing season. Together, these provide relatively accurate estimates of biweekly ET during the study (RMSE=0.396 and 0.347 mm/d, r2 = 62 and 0.971 at the bulrush and mixed sites, respectively). A fourth-order polynomial fit of the biweekly growing season values to day of year provides a more automated form of ET computation. Measured ET at the bulrush wetland site during the current study compares very closely with growing-season ET estimated during a study in 1997 at nearly the same location. During the earlier study, ET was measured four times, using eddy covariance for 1- to 2-day periods, and was estimated between measurement periods using a Penman-Monteith model, calibrated to the measurements. Differences between time series of ET from the two studies are similar to interannual differences within the current study. Compared to the 1997 study, the current study measured larger ET rates in early summer and smaller rates in late summer, resulting in very similar growing-season totals. A study conducted in 2000 estimated ET from nearby fallowed cropland, using the Bowen-ratio energy balance method supplemented with Priestley-Taylor and crop-coefficient ET modeling. Seasonal timing of ET from three different crop types varied considerably, but growing-season totals were remarkably similar, at 0.435 ± 0.009 m. Wetland ET measured during the current study, evaluated over the same growing season was 0.718 m, or about 65 percent greater than the fallowed cropland ET. Open-water evaporation from Upper Klamath Lake was measured at two locations during the warmer months of 2008–2010 using the Bowen-ratio energy balance method. Measured rates were in general agreement with those measured in 2003 using the same method. Open-water evaporation and wetland ET were nearly equal during late June through early August, when wetland vegetation was green and abundant. As expected, open-water evaporation consistently exceeded wetland ET during late summer, as wetland ET responded to vegetation senescence while open water evaporation responded to extra available energy in the form of heat previously stored in the lake. Overall, open-water evaporation was 20 percent greater than wetland ET during the same period.

Oregon↗

USGS2010

AVHRR channel selection for land cover classification

Mapping land cover of large regions often requires processing of satellite images collected from several time periods at many spectral wavelength channels. However, manipulating and processing large amounts of image data increases the complexity and time, and hence the cost, that it takes to produce a land cover map. Very few studies have evaluated the importance of individual Advanced Very High Resolution Radiometer (AVHRR) channels for discriminating cover types, especially the thermal channels (channels 3, 4 and 5). Studies rarely perform a multi-year analysis to determine the impact of inter-annual variability on the classification results. We evaluated 5 years of AVHRR data using combinations of the original AVHRR spectral channels (1-5) to determine which channels are most important for cover type discrimination, yet stabilize inter-annual variability. Particular attention was placed on the channels in the thermal portion of the spectrum. Fourteen cover types over the entire state of Colorado were evaluated using a supervised classification approach on all two-, three-, four- and five-channel combinations for seven AVHRR biweekly composite datasets covering the entire growing season for each of 5 years. Results show that all three of the major portions of the electromagnetic spectrum represented by the AVHRR sensor are required to discriminate cover types effectively and stabilize inter-annual variability. Of the two-channel combinations, channels 1 (red visible) and 2 (near-infrared) had, by far, the highest average overall accuracy (72.2%), yet the inter-annual classification accuracies were highly variable. Including a thermal channel (channel 4) significantly increased the average overall classification accuracy by 5.5% and stabilized interannual variability. Each of the thermal channels gave similar classification accuracies; however, because of the problems in consistently interpreting channel 3 data, either channel 4 or 5 was found to be a more appropriate choice. Substituting the thermal channel with a single elevation layer resulted in equivalent classification accuracies and inter-annual variability.

International Journal of Remote Sensing↗

USGS2008

Simplified Surface Energy Balance (SSEB) approach for estimating actual ET: An evaluation with lysimeter data

Evapotranspiration (ET) is an essential component of the water balance and a major consumptive use of irrigation water and precipitation on cropland. Numerous energy balance (EB) algorithms have been developed to make use of remote sensing data to estimate ET regionally. However, a review of different ET mapping algorithms shows that most EB models are complex to use and may not be suitable for operational ET remote sensing. Efforts are being made to simplify procedures to estimate regional ET mainly through the scaling of reference ET. The Simplified Surface Energy Balance (SSEB) is one such method. In this study, the SSEB approach was applied to six Landsat TM images covering a major portion of the Southern High Plains (parts of the Texas Panhandle and northeastern New Mexico) that were acquired during the 2007 cropping season. Performance of the SSEB was evaluated by comparing estimated ET with measured daily ET from four large monolithic lysimeters, with each lysimeter located in the center of a 210 by 225 m field at the USDA_ARS Conservation and Production Research Laboratory, Bushland, Tex. [350 11' N, 1020 06' W; 1,170 m elevation MSL]. Results indicated that the SSEB can provide ET estimates with reasonable accuracy for the Bushland location. However, more evaluation is needed for different agroclimatological conditions in the region.

Conference Paper↗

USGS1961

Effect of reforestation on streamflow in central New York

Hydrologic data have been collected since 1932 in central New York State to determine the effect of reforestation on streamflow. Data are available for three small partly reforested areas and for one nonreforested control area. From 35 to 58 percent of the 3 areas were reforested, mostly with species of pine and spruce. The trees were allowed to grow without thinning or cutting, and by 1958 these reforested areas had developed into dense coniferous woodlots. Intensive statistical analyses of the data from the four study areas were made in 1958. Analyses were made for three hydrologic periods: the dormant season represented by the 6-month period ending April 30, the growing season represented by the 6-month period ending October 31, and the year represented by the 12-month period ending April 30. Analyses of the hydrologic data using multiple correlation with time as a variable and analyses of covariance between early and late periods of record indicated that several significant changes had occurred in the streamflow from the partly reforested study areas. Based on correlation with precipitation, total runoff for the dormant season from the 3 study areas was reduced by annual rates of 0.17 to 0.29 inches per year. Based on correlations with streamflow from a control area, total runoff from the partly reforested Shackham Brook area was reduced by average rates of 0.14 inches per growing season, 0.23 inches per dormant season, and 0.36 inches per hydrologic year. Peak discharges on Shackham Brook during the dormant season were reduced by 1958 by an average of 41 percent for the season, with reductions ranging from an average of 66 percent for November to an average of 16 percent for April. No significant changes were found in the peak discharges for the growing season, rates of base-flow recession, volumes of direct runoff, or annual low flows of streams in the three partly reforested areas. The significant reductions in total runoff are attributed to increases in interception and transpiration in the reforested areas. The reductions in peak discharges during the dormant period are attributed largely to increased interception and sublimation of snowfall, and a gradual desynchronization of snowmelt runoff from the wooded and open areas of partly reforested watersheds. The changes in streamflow occurred gradually over the years; it could not be determined from the data whether changes in streamflow were still occurring in 1958, or whether they had reached a maximum.

Water Supply Paper↗

USGS2009

Lysimetric evaluation of simplified surface energy balance approach in the Texas high plains

Numerous energy balance (EB) algorithms have been developed to make use of remote sensing data to estimate evapotranspiration (ET) regionally. However, most EB models are complex to use and efforts are being made to simplify procedures mainly through the scaling of reference ET. The Simplified Surface Energy Balance (SSEB) is one such method. This approach has never been evaluated using measured ET data. In this study, the SSEB approach was applied to 14 Landsat TM images covering a major portion of the Southern High Plains that were acquired during 2006 and 2007 cropping seasons. Performance of the SSEB was evaluated by comparing estimated ET with measured daily ET from four large monolithic lysimeters at the USDA-ARS Conservation and Production Research Laboratory, Bushland, Texas. Statistical evaluation of results indicated that the SSEB accounted for 84% of the variability in the measured ET values with a slope and intercept of 0.75 and 1.1 mm d -1 , respectively. Considering the minimal amount of ancillary data required and excellent performance in predicting daily ET, the SSEB approach is a promising tool for mapping ET in the semiarid Texas High Plains and in other parts of the world with similar hydro-climatic conditions.

Applied Engineering in Agriculture↗

USGS2009

Lysimetric Evaluation of Simplified Surface Energy Balance Approach in the Texas High Plains

Numerous energy balance (EB) algorithms have been developed to make use of remote sensing data to estimate evapotranspiration (ET) regionally. However, most EB models are complex to use and efforts are being made to simplify procedures mainly through the scaling of reference ET. The Simplified Surface Energy Balance (SSEB) is one such method. This approach has never been evaluated using measured ET data. In this study, the SSEB approach was applied to fourteen Landsat TM images covering a major portion of the Southern High Plains that were acquired during 2006 and 2007 cropping seasons. Performance of the SSEB was evaluated by comparing estimated ET with measured daily ET from four large monolithic lysimeters at the USDA-ARS Conservation and Production Research Laboratory, Bushland, Texas. Statistical evaluation of results indicated that the SSEB accounted for 84% of the variability in the measured ET values with a slope and intercept of 0.75 and 1.1 mm d-1, respectively. Considering the minimal amount of ancillary data required and excellent performance in predicting daily ET, the SSEB approach is a promising tool for mapping ET in the semiarid Texas High Plains and in other parts of the world with similar hydro-climatic conditions.

Applied Engineering in Agriculture↗

USGS2014

Pacific Continental Shelf Environmental Assessment (PaCSEA): aerial seabird and marine mammal surveys off northern California, Oregon, and Washington, 2011-2012

Marine birds and mammals comprise an important community of meso- and upper-trophic-level predators within the northern California Current System (NCCS). The NCCS is located within one of the world’s four major eastern boundary currents and is characterized by an abundant and diverse marine ecosystem fuelled seasonally by wind-driven upwelling which supplies nutrient-rich water to abundant phytoplankton inhabiting the surface euphotic zone. The oceanographic conditions throughout the NCCS fluctuate according to well-described seasonal, inter-annual, and decadal cycles. Such oceanographic variability can influence patterns in the distribution, abundance, and habitat use among marine birds and mammals. Although there are an increasing number of studies documenting distributions and abundances among birds and mammals in various portions of the NCCS, there have been no comprehensive, large-scale, multi-seasonal surveys completed throughout this region since the early 1980s (off northern California; Briggs et al. 1987) and early 1990s (off Oregon and Washington; Bonnell et al. 1992, Briggs et al. 1992, Green et al. 1992). During 2011 and 2012, we completed the Pacific Continental Shelf Environmental Assessment (PaCSEA) which included replicated surveys over the continental shelfslope from shore to the 2000-meter (m) isobath along 32 broad-scale transects from Fort Bragg, California (39° N) through Grays Harbor, Washington (47° N). Additionally, surveys at a finer scale were conducted over the continental shelf within six designated Focal Areas: Fort Bragg, CA; Eureka, CA; Siltcoos Bank, OR; Newport, OR; Nehalem Bank, OR; and Grays Harbor, WA. We completed a total of 26,752 km of standardized, low-elevation aerial survey effort across three bathymetric domains: inner-shelf waters (<100-m depth), outer shelf waters (100 – 200-m depth) and continental slope waters (200 – 2000-m depth). Survey effort was similar among seasons (winter, summer, and fall) and between years and varied according to the three bathymetric domains: 47% (12,646 km) covered the continental slope, 33% (8887 km) covered the inner-shelf (0 – 100-m depth), and 20% (5,219 km) covered the outer-shelf. Overall, we recorded 15,403 sightings of 59,466 individual marine birds (12 families, 54 species). During winter, seven species groupings comprised >90% of the total number of birds counted (19,033) with Common Murres (Uria aalge) representing the majority of individuals counted (70.4% of total). The remaining six most abundant taxa included: Surf/White-winged Scoters (Melanitta perspicillata/M. fusca; 4.8% of total), Herring/Thayer’s Gulls (Larus argentatus/L. thayeri; 3.8% of total), Cassin’s Auklets (Ptychoramphus aleuticus; 3.8% of total), Glaucous-winged Gulls (Larus glaucescens; 3.7% of total), Black-legged Kittiwakes (Rissa tridactyla; 2.0% of total), and Western Gulls (Larus occidentalis; 1.9% of total). During summer, five species comprised >95% of the total number of birds counted (17,063) with the majority comprised of Common Murres (54.1% of total) and Sooty Shearwaters (Puffinus griseus; 34.4% of total). The remaining most abundant three taxa included: Fork-tailed Storm-Petrels (Oceanodroma furcata; 3.3% of total), Western Gulls (2.1% of total), and Leach’s Storm-Petrels (Oceanodroma leucorhoa; 1.1% of total). During fall, nine species comprised >85% of the total number of birds counted (23,376) with the majority comprised of Common Murres (50.0% of total) and Sooty Shearwaters (10.5% of total). The remaining seven taxa included Cassin’s Auklets (5.2% of total), Surf/White-winged Scoters (5.1% of total), Fork-tailed Storm-Petrels (3.8% of total), Red/Red-necked Phalaropes (Phalaropus fulicarius/P. lobatus; 3.2% of total), California Gulls (Larus californicus; 3.1% of total), Northern Fulmars (Fulmarus glacialis; 2.7% of total), and Sabine’s Gulls (Xema sabini; 2.2% of total). Throughout the entire PaCSEA survey area, average densities (± SE) at sea for all marine birds combined were similar between fall (23.7 ± 1.9 birds km -2 ) and winter (24.0 ± 1.9 birds km -2 ) and least during summer (16.3 ± 2.2 birds km -2 ). Marine bird densities at sea varied according to bathymetric domain and season. Throughout the entire PaCSEA study area average densities (± SE) for all marine birds combined were greatest over the inner-shelf domain (<100-m depth) during fall (49.4 ± 5.0 birds km -2 ) and similar during winter (37.4 ± 4.6 birds km -2 ) and summer (37.5 ± 6.4 birds km -2 ). Within the outer-shelf domain (100 – 200-m depth), average densities for all marine birds combined were greatest during winter (34.6 ± 4.2 birds km-2), lesser during fall (16.2 ± 1.7 birds km-2), and least during summer (6.9 ± 1.1 birds km-2). Within the farthest offshore waters over the continental slope domain (200 – 2000-m depth) average densities for all marine birds combined were greatest during fall (10.0 ± 2.2 birds km -2 ) and winter (9.3 ± 1.5 birds km -2 ), and lesser during summer (6.2 ± 1.4 birds km -2 ). We observed 16 cetacean species and five pinniped species. Among the Mysticeti (baleen whales), humpback whales (Megaptera novaeangliae) were most frequently observed (114 sightings of 264 individuals) during summer and fall mostly over the outer-shelf and slope waters, however, individuals were also seen within the Siltcoos, Nehalem, Fort Bragg, and Eureka Focal Areas. We recorded 11 Odontoceti (toothed whale) species. Harbor porpoises (Phocoena phocoena) were the most frequently sighted (164 sightings of 270 individuals). Harbor porpoises were present year-round and most frequently sighted within the inner-shelf domain throughout the entire study area in all seasons. Harbor porpoises occurred in all six Focal Areas, with noteworthy aggregations within the Eureka, Siltcoos, and Grays Harbor Focal Areas. We recorded 246 sightings of 375 individual pinnipeds (5 species). California sea lions (Zalophus californianus) were the most frequently sighted and were present year-round with slightly more sightings recorded during the fall. California sea lions showed a decreasing frequency of sightings and relative abundance with distance from shore across the bathymetric domains surveyed, being most frequently observed over the inner-shelf. Northern elephant seals (Mirounga angustirostris), harbor seals (Phoca vitulina), and northern fur seals (Callorhinus ursinus) were observed occasionally during all seasons with harbor seals occurring nearshore (usually within 10 km of the coast) and northern fur seals almost exclusively beyond the shelf break (> 200-m depth), especially during winter off Oregon and Washington. Northern (Steller’s) sea lions (Eumetopias jubatus) were uncommonly sighted during winter and fall.

California;Oregon;Washington↗

USGS1992

Summer bird use of Kansas windbreaks

Twenty-four windbreaks in Stafford and Pawnee counties in Kansas were censused for birds during the nesting seasons of 1988-1990. Eighty-nine species of birds were found in the windbreaks with 60 species believed to be nesting. Fifteen species used the windbreaks for feeding or as singing perches but did not nest, and 14 species were spring migrants. Species representing 20 taxonomic families and 15 foraging guilds nested in the windbreaks. Fifteen species were members of the omnivore/ground forager guild. Five species considered forest interior or area sensitive were found nesting in the windbreaks. Windbreak area was important in determining which species were present. Windbreaks provide habitat for a large component of the Great Plains' avifauna, including some species whose populations are decreasing in the region.

Kansas↗

USGS2020

Northern Goshawk (Accipiter gentilis) home range, movement and forays revealed by GPS-tracking

The Northern Goshawk ( Accipiter gentilis ) is an apex predator occurring across North America and Eurasia. The species has received considerable conservation focus in late-seral conifer forests of western North America, where its habitat has been substantially reduced and altered by timber harvest and is increasingly at risk from high severity fire, drought, and forest pathogens. In the Sierra Nevada range of California, management and conservation of goshawks are hampered by a lack of knowledge of their basic space use and movement ecology. We used global positioning system (GPS) loggers to investigate space use of 20 resident, adult Northern Goshawks over 3 yr (2015–2018) in the Plumas National Forest, California. Median home range sizes of male goshawks were more than twice as large as those of females, and nonbreeding-season home ranges were three times larger than breeding-season home ranges. High resolution GPS data (location interval 1–6 min) allowed quantification of daily transit distances up to 60 km for individual goshawks and revealed long-distance forays into adjacent territories and surrounding areas. Four goshawks (three males, one female) undertook forays >8 km from their nest locations, with forays lasting up to 6 d; these forays occurred during both breeding and nonbreeding seasons for both sexes. Comparing our results to current conservation approaches, we determined that USDA Forest Service goshawk Protected Activity Centers protected <25% of both the roost locations and the area used during the daytime. Conservation efforts for Northern Goshawks in the Sierra Nevada would benefit from consideration of year-round habitat needs at larger scales than previously thought.

California↗

USGS1987

Temporal variations in the benthic communities at four intertidal sites in San Francisco Bay, California, 1983-85

Benthic core samples were collected monthly from January 1983 through January 1985 at four intertidal sites in San Francisco Bay, California, two in the northern part of the bay (North Bay) and two in the southern part of the bay (South Bay). Considerable variation was observed in numbers of species and individuals at the four sites, and abundances within species varied widely. Temporal changes in species abundances appeared to be related to freshwater inflow patterns and resultant salinity variations in the estuary. The 1982-83 winter season was extremely wet, with heavy freshwater inflow to the bay from January through March, whereas the 1983-84 winter was closer to a normal pattern, with most rainfall occurring from November through January. Species were grouped into four categories depending on their patterns of abundance during the 2-yr period. Species that showed an abundance peak in the North Bay in 1983 only were Corophium sp.B and a Chironomidae larva, apparently responding to the extended period of lowered salinity throughout spring and early summer. Species with an abundance peak only in 1984 included Corophium Acherusicum, Eteone californica, Nereis succinea, and Grandidierella japonica, typical estuarine species that might have been suppressed during the extended freshwater inflows in 1983. Species with peaks in both years were Gemma gemma and Ampelisca abdita in the South Bay; both showed strong seasonal variations. A number of species in both North and South Bays, including dominant members of the intertidal community such as Macoma balthical and Streblospio benedicti, did not show any consistent seasonal or year-to-year trends. Results of this study suggest that the intensity and timing of freshwater inflow to San Francisco Bay, particularly higher-than-normal inflow during late spring and early summer, may be an important factor in determining the composition of the intertidal benthic communities. (Author 's abstract)

California↗

USGS2023

Joint spatiotemporal models to predict seabird densities at sea

Introduction: Seabirds are abundant, conspicuous members of marine ecosystems worldwide. Synthesis of distribution data compiled over time is required to address regional management issues and understand ecosystem change. Major challenges when estimating seabird densities at sea arise from variability in dispersion of the birds, sampling effort over time and space, and differences in bird detection rates associated with survey vessel type. Methods: Using a novel approach for modeling seabirds at sea, we applied joint dynamic species distribution models (JDSDM) with a vector-autoregressive spatiotemporal framework to survey data collected over nearly five decades and archived in the North Pacific Pelagic Seabird Database. We produced monthly gridded density predictions and abundance estimates for 8 species groups (77% of all birds observed) within Cook Inlet, Alaska. JDSDMs included habitat covariates to inform density predictions in unsampled areas and accounted for changes in observed densities due to differing survey methods and decadal-scale variation in ocean conditions. Results: The best fit model provided a high level of explanatory power (86% of deviance explained). Abundance estimates were reasonably precise, and consistent with limited historical studies. Modeled densities identified seasonal variability in abundance with peak numbers of all species groups in July or August. Seabirds were largely absent from the study region in either fall (e.g., murrelets) or spring (e.g., puffins) months, or both periods (shearwaters). Discussion: Our results indicated that pelagic shearwaters ( Ardenna spp.) and tufted puffin ( Fratercula cirrhata ) have declined over the past four decades and these taxa warrant further investigation into underlying mechanisms explaining these trends. JDSDMs provide a useful tool to estimate seabird distribution and seasonal trends that will facilitate risk assessments and planning in areas affected by human activities such as oil and gas development, shipping, and offshore wind and renewable energy.

Alaska↗

USGS2024

Examining the effect of physicochemical and meteorological variables on water quality indicators of harmful algal blooms in a shallow hypereutrophic lake using machine learning techniques

Two independent machine learning techniques, boosted regression trees and artificial neural networks, were used to examine the physicochemical and meteorological variables that affect the seasonal growth and decline of harmful algal blooms (HABs) in a shallow, hypereutrophic lake in southern Oregon. High temporal resolution data collected at four monitoring locations were aggregated into daily timesteps to create two response variables: (1) daily maximum pH (pH max ), representing HAB growth, and (2) daily minimum dissolved oxygen (DO min ), representing HAB decline. Predictors included meteorological and physical data, estimates of external phosphorus loading, and previous-year average nutrient concentrations, and excluded HAB biomass and internal phosphorus loading. The predictors that captured seasonal changes in both pH max and DO min were temperature, inflows, lake-surface elevation, and external phosphorus loading, while short-term changes were captured by measures of stratification, temperature, and wind speed. The pH max models had similar fits with leave-one-year-out cross-validation (LOYO-CV) R 2 values of 0.2–0.43 (median = 0.40). The DO min models for the deeper locations had LOYO-CV R 2 values of 0.27–0.43 compared to 0.1–0.25 for the shallower locations. Model performance was affected by variability due to patchiness of HABs, measurement uncertainty, and advection.

Water↗

USGS2019

Application of a regional climate model to assess changes in the climatology of the Eastern US and Cuba associated with historic landcover change

We examine the annual, seasonal, monthly, and diurnal climate responses to the land use change (LUC) in eastern United States and Cuba during four epochs (1650, 1850, 1920, and 1992) with ensemble simulations conducted with the RegCM4 regional climate model that includes the Biosphere Atmosphere Transfer Scheme (BATS1e) surface physics package (Dickinson et al., 1993). We derived the land use (LU) data sets by harmonizing a previous reconstruction (Steyaert & Knox, 2008) with updated observations and modeled potential vegetation. The eight‐member ensembles for each epoch were driven with randomly perturbed 1990–2002 atmospheric boundary conditions derived from the National Center for Environmental Prediction global reanalysis. LUC induces statistically significant climate responses across all epochs; the largest changes occur between 1850 and 1920 with the widespread conversion of forests in the United States and forests, grassland, and woody wetlands in Cuba to agriculture. The atmospheric feedback from the aggregated grid‐cell responses attributed to physical and biophysical parameters in BATS1e alters the circulation in the lower atmosphere, thereby propagating the LUC regionally. Depending on the season and location, the altered circulation reinforces, attenuates, or has little effect on surface responses. Relative to pre‐settlement (1650), the 1992 LU produces colder mean annual air temperature (−0.09 ± 0.16 °C) and increased precipitation (0.08 ± 0.09 mm day −1 ) over the United States, warmer (0.08 °C) and wetter (0.03 mm day −1 ) conditions over Florida, and warming (0.32 °C) and drying (−0.03 mm day −1 ) over Cuba, indicating that LUC has played a varying role in climate change over the region.

Florida↗