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At least 361 records · Page 20Linked to original sources
USGS2015

The Landscape Evolution Observatory: a large-scale controllable infrastructure to study coupled Earth-surface processes

Zero-order drainage basins, and their constituent hillslopes, are the fundamental geomorphic unit comprising much of Earth's uplands. The convergent topography of these landscapes generates spatially variable substrate and moisture content, facilitating biological diversity and influencing how the landscape filters precipitation and sequesters atmospheric carbon dioxide. In light of these significant ecosystem services, refining our understanding of how these functions are affected by landscape evolution, weather variability, and long-term climate change is imperative. In this paper we introduce the Landscape Evolution Observatory (LEO): a large-scale controllable infrastructure consisting of three replicated artificial landscapes (each 330 m 2 surface area) within the climate-controlled Biosphere 2 facility in Arizona, USA. At LEO, experimental manipulation of rainfall, air temperature, relative humidity, and wind speed are possible at unprecedented scale. The Landscape Evolution Observatory was designed as a community resource to advance understanding of how topography, physical and chemical properties of soil, and biological communities coevolve, and how this coevolution affects water, carbon, and energy cycles at multiple spatial scales. With well-defined boundary conditions and an extensive network of sensors and samplers, LEO enables an iterative scientific approach that includes numerical model development and virtual experimentation, physical experimentation, data analysis, and model refinement. We plan to engage the broader scientific community through public dissemination of data from LEO, collaborative experimental design, and community-based model development.

Arizona↗
USGS2022

Rapid ʻŌhiʻa Death in Hawaiʻi

Ceratocystis lukuohia and Ceratocystis huliohia are two newly recognized fungi that have arrived in Hawai‘i and are causing a serious vascular wilt and canker disease, respectively, of ‘ōhi‘a trees ( Metrosideros polymorpha ), the most common and important tree species in Hawai‘i. Management of these diseases has presented challenges due to unique etiological aspects and the exceptionally pathogenic nature of one of these fungi ( C. lukuohia ) once it gains access to the tree’s vascular tissue. Careful study of the spread of the pathogens has resulted in an understanding of the role of ambrosia beetles and the frass they produce that carries the pathogen, as well as the wounding of trees by many different agents by which the pathogen can access and infect the vascular tissue. A variety control measures are being used. These include a state-of-the-art monitoring program to detect diseased and recently killed trees and molecular biology approaches that can confirm if a given tree was infected by Ceratocystis . Based on monitoring more than one million trees have been estimated as killed by the diseases to date. A major part of the program includes the deployment of a field crew that seeks out and fells large infected ‘ōhi‘a trees as these trees are the main source of most of the infective Ceratocystis -laden frass. Long-term control measures also include fencing of some forests to reduce the amount of wounding to ‘ōhi‘a trees by feral cattle and pigs that allows entry of the fungi and quarantine restrictions to ensure there will be no inter-island movement of the pathogens in ‘ōhi‘a products. Finally, methods are also being developed to restore ‘ōhi‘a forests affected by these diseases by determining effective regeneration practices and developing genetically resistant ‘ōhi‘a stock. Hawai‘i has an active extension program dedicated to providing information on how residents and visitors can contribute to protecting ‘ōhi‘a trees from these diseases. More than 500,000 people have participated in this program. Hawai‘i residents have a very deep appreciation for this tree species and do what they can to help prevent these diseases from destroying more of their most treasured tree species.

Hawai'i↗
USGS2025

Bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream and riparian food web contaminated by food processing wastewater

We evaluated the bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream food web contaminated by a food processing facility. Abiotic (i.e., water, sediment, and foam) and biotic (i.e., algae, aquatic insect larvae and adults, fish, and riparian spiders) matrices were sampled upstream and downstream of the facility’s wastewater outfall. Compared with upstream, PFAS concentrations were 600-fold higher in downstream water (mean ∑ 40 PFAS 3.67 ng mL –1 ± 0.48 (standard error)) and reflected inputs from the outfall, with 6:2 fluorotelomer sulfonate (6:2 FTS) dominating the PFAS profile. Within the aquatic food web, perfluorooctanesulfonate (PFOS) was the most biomagnified, and 6:2 FTS was the most biodiluted. In contrast, insect-mediated transfer of PFAS to riparian spiders showed trophic enrichment of 6:2 FTS and dilution of PFOS. We observed significant positive associations between phospholipid membrane-water partition coefficient (log K MW ) and perfluoroalkyl carboxylate (PFCA) chain length on bioaccumulation across most biological matrices, demonstrating that these chemical parameters are predictive of PFAS bioaccumulation potential in the field. Our research reveals important differences in aquatic versus terrestrial exposure for certain PFAS and that biological processes (e.g., trophic interactions and metamorphosis) and chemical properties (e.g., chain length, log K MW , and concentration) control PFAS uptake, bioaccumulation, and transfer in linked freshwater and terrestrial ecosystems.

Environmental Science & Technology↗
USGS2001

Sedimentary Carbon, Sulfur, and Iron Relationships in Modern and Ancient Diagenetic Environments of the Eel River Basin (U.S.A.)

Depositional and diagenetic controls on the distributions of carbon, sulfur, and iron (C-S-Fe) in modern sediments and upper Pleistocene mudrocks of the Eel River Basin (ERB), northern California continental margin, were investigated using a combination of geochemical, radioisotopic, and sedimentological methods. A mass balance based on down-core profiles of porewater and solid-phase constituents and diagenetic modeling suggests that only 12-30% of the pyrite-S produced via SO 4 -2 reduction during burial is retained in modern shelf and upper slope deposits of the ERB. Bioturbational reoxidation of initially reduced S is inferred to be the major control on S preservation, on the basis of an observed inverse relationship between pyrite-S retention and biological mixing intensity, estimated from profiles of excess 234 Th. Importantly, these findings argue that massive depositional episodes on the shelf following floods of the Eel River have a negligible long-term impact on bioturbating macrofauna and the potential to affect geochemical properties of the sediments. Down-core profiles of reactive Fe 3+ and Py-Fe(II) for the modern deposits suggest that highly reactive Fe phases are sulfidized well within ∼ 500-2000 years of burial, thereby limiting later pyritization, which could occur through sulfidation of less reactive phases. This result explains the low (≤ 0.4) degree of pyritization (DOP) values exhibited by both modern and ancient deposits of the ERB and lends support to the notion that pyritization in aerobic continental-margin sediments is largely associated with highly reactive detrital Fe oxides. Comparable mean C/S weight ratios for modern sediments (5.4 ± 3.3, 1σ) and mudrocks (6.9 ± 4.5) of the ERB suggest that the upper Pleistocene strata reflect a geochemical environment analogous to that of the modern margin. Specifically, the C-S-Fe signatures shared by the modern and ancient deposits are a consequence of similar detrital Fe mineralogies, initial organic-matter content (C org ≤ 1%) and composition (C/N = 13 to 17, δ 13 C org = -22 to -25‰), burial rate, and importantly, bioturbation intensity. The findings of this study have important implications for the use of C-S-Fe signatures as indicators of diagenetic processes in dynamic, continental-margin environments.

California↗
USGS2002

Components of productivity in black-legged kittiwakes Rissa tridactyla: Response to supplemental feeding

In contrast to the high productivity of black‐legged kittiwakes in Britain, kittiwakes at many colonies in Alaska have failed chronically to reproduce since the mid 1970s. To determine if food is limiting productivity and, if so, at what stages of nesting food shortages are most severe, in 1996 and 1997 we supplementally fed kittiwakes nesting on an abandoned building. The effects of feeding were stronger in 1997 than in 1996, possibly because naturally occurring prey were of poorer quality in 1997. Consumption of supplemental herring declined as egg laying approached then increased slowly during incubation and more rapidly after hatching. All of the six components of productivity we studied were improved by supplemental feeding to some degree. Supplemental food did not significantly alter laying success in either year, although fed pairs bred at slightly higher rates than unfed pairs in 1997, the poorer food year. In 1996 and 1997, extra food noticeably increased clutch size and hatching success, but significantly so only in 1997. Fledging success and productivity were substantially augmented by feeding in both years. Fed pairs fledged twice as many chicks per nest as did unfed pairs in 1996 and three times as many in 1997. Fed and unfed pairs lost most of their potential productivity through the inability to hatch eggs, and secondarily because of their poor success at raising chicks. The benefits of supplemental feeding did not carry over from one stage of breeding to another. Pairs cut off from supplemental food after laying or hatching performed similarly to pairs that had not been previously fed. This study provides benchmark values of breeding performance attainable by kittiwakes in Alaska under optimal conditions. These values are comparable to highly productive colonies in Britain and suggest that differences in life‐history characteristics between Pacific and Atlantic breeding populations are primarily controlled by food supply.

Alaska↗
USGS1975

An introduction to the processes, problems, and management of urban lakes

Lakes are bodies of water formed in depressions on the earth's surface, and as such, act as depositories for a variety of chemical and biological materials. The study of lakes has become increasingly prevalent in recent years. Lakes are a valuable resource, and their multiple uses have made them susceptible to water-quality problems such as algal blooms, sediment deposition and fish kills. These problems are products of the eutrophication process (enrichment, aging and extinction of lakes), which is often accelerated by man. Therefore, it becomes important to understand the properties and processes of lakes which govern lake enrichment, and the measures available to control enrichment. Lakes are described in terms of their physical (light penetration, temperature, sediment, and morphology), chemical (chemical constituents, plant nutrients:, and dissolved gases) and biological (plankton, benthos, and nekton) properties. These properties are all interre]ated, and are important variables to measure to evaluate water quality. In addition, lake processes, such as photosynthesis, respiration, eutrophication, and biogeochemical cycling, are important factors in determining the sources and extent of enrichment, and managing a lake for maximum benefit. Meeting demands for water of high quality requires a general knowledge of lake properties and processes, coupled with lake-basin planning, watershed and lake management, and water-quality control. There are many lake-management and control practices, but the best tools for quality control are preventive measures. Once extensive enrichment has occurred, there are few management or control options available. As lake studies become more common, sampling techniques for data collection need increased accuracy and consistency, in order to make meaningful comparisons between different lakes. Therefore, the report discusses the main factors involved in conducting lake studies. These factors include the types and frequency of measurements useful in lake reconnaissance studies and a review of literature on sampling equipment and techniques. A glossary of selected terms begins the report, which is intended for guideline use by urban planners and managers.

Circular↗
USGS2011

Endocrine active chemicals, pharmaceuticals, and other chemicals of concern in surface water, wastewater-treatment plant effluent, and bed sediment, and biological characteristics in selected streams, Minnesota: Design, methods, and data, 2009

This report presents the study design, environmental data, and quality-assurance data for an integrated chemical and biological study of selected streams or lakes that receive wastewater-treatment plant effluent in Minnesota. This study was a cooperative effort of the U.S. Geological Survey, the Minnesota Pollution Control Agency, St. Cloud State University, the University of St. Thomas, and the University of Colorado. The objective of the study was to identify distribution patterns of endocrine active chemicals, pharmaceuticals, and other organic and inorganic chemicals of concern indicative of wastewater effluent, and to identify biological characteristics of estrogenicity and fish responses in the same streams. The U.S. Geological Survey collected and analyzed water, bed-sediment, and quality-assurance samples, and measured or recorded streamflow once at each sampling location from September through November 2009. Sampling locations included surface water and wastewater-treatment plant effluent. Twenty-five wastewater-treatment plants were selected to include continuous flow and periodic release facilities with differing processing steps (activated sludge or trickling filters) and plant design flows ranging from 0.002 to 10.9 cubic meters per second (0.04 to 251 million gallons per day) throughout Minnesota in varying land-use settings. Water samples were collected from the treated effluent of the 25 wastewater-treatment plants and at one point upstream from and one point downstream from wastewater-treatment plant effluent discharges. Bed-sediment samples also were collected at each of the stream or lake locations. Water samples were analyzed for major ions, nutrients, trace elements, pharmaceuticals, phytoestrogens and pharmaceuticals, alkylphenols and other neutral organic chemicals, carboxylic acids, and steroidal hormones. A subset (25 samples) of the bed-sediment samples were analyzed for carbon, wastewater-indicator chemicals, and steroidal hormones; the remaining samples were archived. Biological characteristics were determined by using an in-vitro bioassay to determine total estrogenicity in water samples and a caged fish study to determine characteristics of fish from experiments that exposed fish to wastewater effluent in 2009. St. Cloud State University deployed and processed caged fathead minnows at 13 stream sites during September 2009 for the caged fish study. Measured fish data included length, weight, body condition factor, and vitellogenin concentrations.

Minnesota↗
USGS2023

Competition between dissolved organic matter and freshwater plankton control methylmercury isotope fractionation during uptake and photochemical demethylation

Isotope fractionation related to photochemical reactions and planktonic uptake at the base of the food web is a major uncertainty in the biological application of mercury (Hg) stable isotopes. In freshwater systems, it is unclear how competitive interactions among methylmercury (MeHg), dissolved organic matter (DOM), and phytoplankton govern the magnitude of mass-dependent and mass-independent fractionation. This study investigated how DOM alters rates of planktonic MeHg uptake and photodegradation and corresponding Hg isotope fractionation in the presence of freshwater phytoplankton species, Raphidocelis subcapitata . Outdoor sunlight exposure experiments utilizing R. subcapitata were performed in the presence of different DOM samples using environmentally relevant ratios of MeHg-DOM thiol groups. The extent of Δ 199 Hg in phytoplankton incubations (2.99‰ St. Louis River HPOA, 1.88‰ Lake Erie HPOA) was lower compared to paired abiotic control experiments (4.29 and 2.86‰, respectively) after ∼30 h of irradiation, resulting from cell shading or other limiting factors reducing the extent of photodemethylation. Although the Δ 199 Hg/Δ 201 Hg ratio was uniform across experiments (∼1.4), Δ 199 Hg/δ 202 Hg slopes varied dramatically (from −0.96 to 15.4) across incubations with R. subcapitata and DOM. In addition, no evidence of Hg isotope fractionation was observed within R. subcapitata cells. This study provides a refined examination of Hg isotope fractionation markers for key processes occurring in the lower food web prior to bioaccumulation, critical for accurately accounting for the photochemical processing of Hg isotopes across a wide spectrum of freshwater systems.

ACS Earth and Space Chemistry↗
USGS2022

Causality guided machine learning model on wetland CH4 emissions across global wetlands

Wetland CH 4 emissions are among the most uncertain components of the global CH 4 budget. The complex nature of wetland CH 4 processes makes it challenging to identify causal relationships for improving our understanding and predictability of CH 4 emissions. In this study, we used the flux measurements of CH 4 from eddy covariance towers (30 sites from 4 wetlands types: bog, fen, marsh, and wet tundra) to construct a causality-constrained machine learning (ML) framework to explain the regulative factors and to capture CH 4 emissions at sub-seasonal scale. We found that soil temperature is the dominant factor for CH 4 emissions in all studied wetland types. Ecosystem respiration (CO 2 ) and gross primary productivity exert controls at bog, fen, and marsh sites with lagged responses of days to weeks. Integrating these asynchronous environmental and biological causal relationships in predictive models significantly improved model performance. More importantly, modeled CH 4 emissions differed by up to a factor of 4 under a +1°C warming scenario when causality constraints were considered. These results highlight the significant role of causality in modeling wetland CH 4 emissions especially under future warming conditions, while traditional data-driven ML models may reproduce observations for the wrong reasons. Our proposed causality-guided model could benefit predictive modeling, large-scale upscaling, data gap-filling, and surrogate modeling of wetland CH 4 emissions within earth system land models.

Agricultural and Forest Meteorology↗
USGS2005

Gulf of Mexico integrated science - Tampa Bay study - Characterization of tidal wetlands

Tidal wetlands in Tampa Bay, Florida, consist of mangrove forests and salt marshes. Wetlands buffer storm surges, provide fish and wildlife habitat, and enhance water quality through the removal of water-borne nutrients and contaminants. Substantial areas of both mangroves and salt marshes have been lost to agricultural, residential, and industrial development in this urban estuary. Wetlands researchers are characterizing the biological components of tidal wetlands and examining the physical factors such as salinity, tidal flushing, and sediment deposition that control the composition of tidal wetland habitats. Wetlands restoration is a priority of resource managers in Tampa Bay. Baseline studies such as these are needed for successful restoration planning and evaluation.

Florida↗
USGS1997

Hydrogeology and water quality of the West Valley Creek Basin, Chester County, Pennsylvania

The West Valley Creek Basin drains 20.9 square miles in the Piedmont Physiographic Province of southeastern Pennsylvania and is partly underlain by carbonate rocks that are highly productive aquifers. The basin is undergoing rapid urbanization that includes changes in land use and increases in demand for public water supply and wastewater disposal. Ground water is the sole source of supply in the basin. West Valley Creek flows southwest in a 1.5-mile-wide valley that is underlain by folded and faulted carbonate rocks and trends east-northeast, parallel to regional geologic structures. The valley is flanked by hills underlain by quartzite and gneiss to the north and by phyllite and schist to the south. Surface water and ground water flow from the hills toward the center of the valley. Ground water in the valley flows west-southwest parallel to the course of the stream. Seepage investigations identified losing reaches in the headwaters area where streams are underlain by carbonate rocks and gaining reaches downstream. Tributaries contribute about 75 percent of streamflow. The ground-water and surface-water divides do not coincide in the carbonate valley. The ground-water divide is about 0.5 miles west of the surface-water divide at the eastern edge of the carbonate valley. Underflow to the east is about 1.1 inches per year. Quarry dewatering operations at the western edge of the valley may act partly as an artificial basin boundary, preventing underflow to the west. Water budgets for 1990, a year of normal precipitation (45.8 inches), and 1991, a year of sub-normal precipitation (41.5 inches), were calculated. Streamflow was 14.61 inches in 1990 and 12.08 inches in 1991. Evapotranspiration was estimated to range from 50 to 60 percent of precipitation. Base flow was about 62 percent of streamflow in both years. Exportation by sewer systems was about 3 inches from the basin and, at times, equaled base flow during the dry autumn of 1991. Recharge was estimated to be 18.5 inches in 1990 and 13.7 inches in 1991. Ground-water quality in the basin reflects differences in lithology and has been affected by human activities. Ground water in the carbonate rocks is naturally hard, has a near neutral pH, and contains more dissolved solids and less dissolved iron, manganese, and radon-222 than ground water in the noncarbonate rocks, which is soft, with moderately acidic to acidic pH. Regional contamination by chloride and nitrate and local contamination by organic compounds and metals was detected. Natural background concentrations are estimated to be about 1 milligram per liter for nitrate as nitrogen and less than 3 milligrams per liter for chloride. Ground water in unsewered areas and agricultural areas of the basin has median concentrations of nitrate that are greater than those in ground water from other areas; septic system effluent and fertilizer are probable sources of elevated nitrate. Water samples from wells in urbanized areas contain greater concentrations of chloride than samples from wells in residential areas; road salt is the probable source of elevated chloride. Organic solvents, especially trichloroethylene, were detected in 30 percent of the wells sampled in the urbanized carbonate valley. Most of the organic solvents and some of the metals in ground water were detected near old industrial sites. Base-flow stream quality of West Valley Creek was determined at 15 sites from monthly sampling for 1 year. Differences in stream quality reflect differences in lithology, land use, and point sources in tributary subbasins and mainstem reaches. The chemical composition of base flow in the mainstem is dominated by ground-water discharge from carbonate rocks. Elevated concentrations of nitrate (greater than 3 milligrams per liter as nitrogen) in base flow were measured in a tributary draining agricultural land and in a tributary draining an unsewered residential area. Elevated concentrations of phosphate (greater than 0.5 milligrams per liter as phosphorus) were measured in a stream that receives treated sewage effluent. Discharge of water containing elevated sulfate (about 250 milligrams per liter) from quarry dewatering operations contributes to die increase in sulfate concentration (of 10 to 40 milligrams per liter) in base flow downstream from the quarry. The chloride load at all stream sites is greater than the load contributed by precipitation and mineral weathering to the basin, indicating anthropogenic sources of chloride throughout the basin. The diversity index of the benthic invertebrate community has increased since 1973 at the longterm biological monitoring site on West Valley Creek, indicating an improvement in stream quality. The improvement probably is related to controls on discharges and banning of pesticides, such as DOT, in the 1970's. Concentrations of dissolved constituents, except for chloride, determined for base flow in the autumn do not appear to have changed since 1971. Application of the seasonal Kendall test for trend indicates that concentrations of chloride in base flow have increased since 1971; this increase may be related to the increase in urbanization in the basin. The benthic community structure at the West Valley Creek site in 1991 indicates slight nutrient enrichment. Lithium was detected in ground water and surface water downgradient from two lithiumprocessing facilities. Until 1991, lithium was discharged into a losing reach of West Valley Creek, thus introducing lithium into the ground-water system. The potential for cross-contamination between the ground-water and surface-water systems is great, as demonstrated by the detection of lithium in ground water and surface water downstream and downgradient from the two lithium-processing facilities. The lithium that was discharged into the creek acts as a conservative tracer in gaining reaches of West Valley Creek, maintaining a mass balance and characteristic isotopic signature. Lithium-7/lithium-6 ratios were greater in streams that are affected by sewage and by lithium-processing discharges and in ground water downgradient from the lithium-processing facilities than natural background lithium isotopic ratios.

Pennsylvania↗
USGS2022

Size distribution and reproductive phenology of the invasive Burmese python (Python molurus bivittatus) in the Greater Everglades Ecosystem, Florida, USA

The design of successful invasive species control programs is often hindered by the absence of basic demographic data on the targeted population. Establishment of invasive Burmese pythons ( Python molurus bivittatus ) in the Greater Everglades Ecosystem, Florida USA has led to local precipitous declines (> 90%) of mesomammal populations and is also a major threat to native populations of reptiles and birds. Efforts to control this species are ongoing but are hampered by the lack of access to and information on the expected biological patterns of pythons in southern Florida. We present data from more than 4,000 wild Burmese pythons that were removed in southern Florida over 26 years (1995–2021), the most robust dataset representing this invasive population to date. We used these data to characterize Burmese python size distribution, size at maturity, clutch size, and seasonal demographic and reproductive trends. We broadened the previously described size ranges by sex and, based on our newly defined size-stage classes, showed that males are smaller than females at sexual maturity, confirmed a positive correlation between maternal body size and potential clutch size, and developed predictive equations to facilitate demographic predictions. We also refined the annual breeding season (approx.100 days December into March), oviposition timing (May), and hatchling emergence and dispersal period (July through October) using correlations of capture morphometrics with observations of seasonal gonadal recrudescence (resurgence) and regression. Determination of reproductive output and timing can inform population models and help managers arrest population growth by targeting key aspects of python life history. These results define characteristics of the species in Florida and provide an enhanced understanding of the ecology and reproductive biology of Burmese pythons in their invasive Everglades range.

Florida↗
USGS1974

A review of the literature on the use of TFM-Bayluscide in fisheries

Since 1956 the Great Lakes Fishery Commission has been responsible for formulating and implementing a program to eradicate or control the sea lamprey in the Great Lakes. The U.S. Fish and Wildlife Service and the Sea Lamprey Control Centre of the Canadian Department of the Environment act as agents for the Commission in sea lamprey control. In the search for a selective lampricide that would control lampreys without destroying fish and other aquatic organisms, about 6,000 chemicals were tested at the Hammond Bay Biological Station of the U.S. Fish and Wildlife Service, largely during the mid 1950's. One compound, TFM, which is selectively toxic to sea lampreys was developed for field use. In 1963 Bayluscide was discovered to be extremely toxic to sea lampreys. Because Bayluscide is also very toxic to fish, being virtually nonselective between lampreys and rainbow trout, only 3% by weight can be added to TFM without losing the selective toxicity of TFM. Addition of small amounts of Bayluscide to TFM, however, effects substantial savings by greatly reducing the amount of TFM needed for effective treatment of lamprey populations. Since 1963 mixtures of TFM and Bayluscide have been used as a lampricide in tributaries of the Great Lakes by both the U.S. and Canadian governments.

Literature Review↗
USGS2019

Skin and fin diseases

Fish are critically important to the welfare of this planet and its occupants, the health of both wild and captive fish populations paramount to our survival. This book presents the gross pathology of the most commonly encountered diseases and syndromes of fish in an organ system-based approach. It provides an overview of the diseases and disorders of tropical, ornamental, bait and food fish from freshwater, brackish and marine environments. Readers will gain a broader understanding of the basic biology of infectious and non-infectious diseases in fish, as well as novel diagnostic techniques and innovative disease control methods.

Book chapter↗
USGS2012

Including long-term biological index performance in a multi-criteria Decision Support System

A Decision Support System (DSS) was developed for the reservoirs operated by the U.S. Bureau of Reclamation that incorporates biological resources in a palette of decision variables. A scoring technique was developed for the DSS to help to evaluate the long-term effects of proposed reservoir system operations on those variables. The biological component of the DSS was developed to help Bureau of Reclamation reservoir operators evaluate the effects of different scenarios of reservoir operations on a variety of water-related biological resources. In this DSS, Reclamation's Reservoir Operations Modeling System (ROMS) is linked to modules evaluating power production, flood control benefits, irrigation water deliveries, municipal and industrial water supplies, habitat for endemic fish communities, tailwater fisheries, nesting habitat for shorebirds, reservoir recreation, reservoir fisheries, and regeneration of riparian cottonwood forests. Operation scenarios generated in ROMS are scored for each decision variable by comparison to a target range of a decision variable for a reference location and time period. The score for a variable is calculated based on the ratio between the percent of time that target conditions are met under alternative operating conditions and under the reference condition, respectively. A scoring technique was developed that recognizes that under either natural or highly managed conditions the reference target is not met at all times. Higher scores are achieved for environmental decision variables by operations scenarios that approach natural seasonal and annual variability in habitat availability.

Conference Paper↗
USGS2020

Influence of sediment and stream transport on detecting a source of environmental DNA

Environmental DNA (eDNA) can be used for early detection, population estimations, and assessment of potential spread of invasive species, but questions remain about factors that influence eDNA detection results. Efforts are being made to understand how physical, chemical, and biological factors—settling, resuspension, dispersion, eDNA stability/decay—influence eDNA estimations and potentially population abundance. In a series of field and controlled mesocosm experiments, we examined the detection and accumulation of eDNA in sediment and water and the transport of eDNA in a small stream in the Lake Michigan watershed, using the invasive round goby fish ( Neogobius melanostomus ) as a DNA source. Experiment 1: caged fish (average n = 44) were placed in a stream devoid of round goby; water was collected over 24 hours along 120-m of stream, including a simultaneous sampling event at 7 distances from DNA source; stream monitoring continued for 24 hours after fish were removed. Experiment 2: round goby were placed in laboratory tanks; water and sediment were collected over 14 days and for another 150 days post-fish removal to calculate eDNA shedding and decay rates for water and sediment. For samples from both experiments, DNA was extracted, and qPCR targeted a cytochrome oxidase I gene (COI) fragment specific to round goby. Results indicated that eDNA accumulated and decayed more slowly in sediment than water. In the stream, DNA shedding was markedly lower than calculated in the laboratory, but models indicate eDNA could potentially travel long distances (up to 50 km) under certain circumstances. Collectively, these findings show that the interactive effects of ambient conditions (e.g., eDNA stability and decay, hydrology, settling-resuspension) are important to consider when developing comprehensive models. Results of this study can help resource managers target representative sites downstream of potential invasion sites, thereby maximizing resource use.

PLoS ONE↗
USGS2022

Understanding the impacts of surface-groundwater conditions on stream fishes under altered baseflow conditions

Persistence of aquatic fauna depends on the conditions and connectivity of surface water and groundwater. In light of altered baseflows and both current and future predicted increases in stream temperatures, it is important to assess current thermal conditions, examine thermal responses of aquatic fauna, and evaluate water-management practices. Our study objectives were to determine (1) how changes in baseflow levels in the Kiamichi River influence hyporheic exchange, which correspondingly influences temperature at the reach scale; (2) temperature tolerances of stream fishes as a means for predicting how habitat complexity influences stream-fish populations; and (3) assess how dam releases influence the downstream temperature and dissolved oxygen regime during the low-flow period. We quantified hyporheic exchange at four reaches and, as expected, found higher groundwater exchange via transient storage occurred at the upstream sites. The net groundwater flux estimation was negative for the majority of reaches indicating that surface water is lost to groundwater during summer (i.e., losing), baseflow conditions. We determined critical thermal maximum (CTMax) for 17 stream fishes and thermal tolerances ranged 32-38°C. We determined the average thermal tolerance for two habitat fish guilds to calculate changes in thermal stress due to hypothetical reservoir release scenarios. We developed a process-based Water Quality Analysis Simulation Program model to predict downstream temperature conditions over 74-km of river in response to reservoir releases that corresponded to discharges of 0.00 (control), 0.34, 0.59, 0.76, 1.13, and 1.50 m3/s. Based on the dissolved oxygen conditions observed in 2015 and 2017 and biological oxygen demand sampling results, reservoir releases did not directly reduce dissolved oxygen concentrations in the Kiamichi River (though dissolved oxygen concentrations are limited to current water-release strategies by the managing agency). We simulated three scenarios using three water-release temperatures: 27.64°C, 26.00°C and 24.07°C that corresponded to average reservoir temperatures at gate locations on the dam. We compared the predicted temperature time series with CTMax of two fish-habitat guilds to quantify the cumulative time when stream fishes experienced severe thermal stress downstream from Sardis Reservoir. According to our simulations, reservoir releases would be capable of regulating downstream water temperature during the summer baseflow period. The 0.00 m3/s scenario resulted in 130 h of thermal stress for benthic fishes, and 73 h for mid-column fishes. As expected, thermal relief increased with increasing release magnitude and decreasing release water temperature. The 0.34 m3/s release scenario reduced thermal stress (range is simulations from the top and bottom gate) by 11-18% for mid-column fishes and 8-12% for benthic fishes with an effective distance (where the cumulative time above CTMax was reduced by half) of 1-2 km for both guilds. The 0.59 m3/s release scenario reduced thermal stress by 18-25% for mid-column fishes and 12-20% for benthic fishes with effective distances of 4-8 km and 2-7 km, respectively. Three releases representing pre-dam flow magnitudes (0.76, 1.13 and 1.50 m3/s released from top gate) reduced thermal stress up to 46% for mid-column fishes and 41% for benthic fishes with an effective distance of 13-16 km, respectively. Lastly, we quantified temperature-induced stress via whole-body cortisol concentration of six stream fishes in response to prolonged thermal exposure at two temperatures (27°C and 32°C). We found no difference in cortisol levels between temperatures for any of the six species, indicating acclimation to elevated temperatures during the test period. However, Highland Stoneroller Campostoma spadiceum expressed cortisol concentrations greater than typical basal levels at both temperatures, suggesting stress from factors other than temperature (i.e., captivity). Our results suggest different reservoir-release options could improve downstream thermal-fish habitat during the summer baseflow period.

Cooperator Science Series↗
USGS1992

Salmonid whirling disease

This paper provides the latest scientific and technical advances in the management of salmonid whirling disease caused by the myxosporean Myxobolus cerebralis (Syn. Myxosoma cerebralis). The complete life cycle of the parasite and the biology of the infective agent to fish, the actinosporean Triactinomyxon stage, are reviewed, and suggested procedures for detection, identification, and control of the disease are discussed. The paper offers sources of information and related reference materials of interest to fish culturists, fishery biologists, and students.

Fish and Wildlife Leaflet↗