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At least 343 records · Page 19Linked to original sources

Comparison of oyster populations, shoreline protection service, and site characteristics at seven created fringing reefs in Louisiana: Key parameters and responses to consider

Coastal erosion threatens many low-lying areas around the globe. Rising sea levels from climate change are expected to increase coastal erosion and exacerbate flooding and storm surges. This is particularly true in low-lying coastal Louisiana, which developed as the Mississippi River changed course (delta switching) over the past 7000 years. Periods of land loss and gain resulted in an intricate coastal environment composed of shallow water areas with wetlands, swamps, barrier islands, and ridges (Day et al. 2007). This complex habitat sustains high economic and biological productivity, supporting the largest commercial fishery in the lower 48 states, providing habitat for important species of fish and wildlife, mitigating storm surge, and delivering protection for oil and gas production facilities, including five of the nation’s largest ports. Because of past and ongoing geological and physical processes, such as subsidence, sea level rise, tropical cyclonic activity, and direct human activities (Barras 2009; Chmura et al. 1992; Georgiou et al. 2005), coastal Louisiana is estimated to have lost an area almost the size of Delaware (4877 km2) between 1932 and 2010, with recent analyses indicating losses averaging 42.9 km2/year (Couvillion et al. 2011).

Book chapter

GAP Analysis Bulletin Number 15

The Mission of the Gap Analysis Project (GAP) <http://gapanalysis.nbii.gov> is to promote conservation by providing broad geographic information on biological diversity to resource managers, planners, and policy makers who can use the information to make informed decisions. As part of the National Biological Information Infrastructure (NBII) <http://www.nbii.gov>?a collaborative program to provide increased access to data and information on the nation?s biological resources--GAP data and analytical tools have been used in hundreds of applications: from basic research to comprehensive state wildlife plans; from educational projects in schools to ecoregional assessments of biodiversity. The challenge: keeping common species common means protecting them BEFORE they become threatened. To do this on a state or regional basis requires key information such as land cover descriptions, predicted distribution maps for native animals, and an assessment of the level of protection currently given to those plants and animals. GAP works cooperatively with Federal, state, and local natural resource professionals and academics to provide this kind of information. GAP activities focus on the creation of state and regional databases and maps that depict patterns of land management, land cover, and biodiversity. These data can be used to identify ?gaps? in conservation--instances where an animal or plant community is not adequately represented on the existing network of conservation lands. GAP is administered through the U.S. Geological Survey. Through building partnerships among disparate groups, GAP hopes to foster the kind of collaboration that is needed to address conservation issues on a broad scale. For more information, contact: John Mosesso National GAP Director 703-648-4079 Kevin Gergely National GAP Operations Manager 208-885-3565

GAP Bulletin

Gap Analysis -A geographic approach to planning for biological diversity

The Mission of the Gap Analysis Project (GAP) is to promote conservation by providing broad geographic information on biological diversity to resource managers, planners, and policy makers who can use the information to make informed decisions. As part of the National Biological Information Infrastructure (NBII) —a collaborative program to provide increased access to data and information on the nation’s biological resources--GAP data and analytical tools have been used in hundreds of applications: from basic research to comprehensive state wildlife plans; from educational projects in schools to ecoregional assessments of biodiversity. The challenge: keeping common species common means protecting them BEFORE they become threatened. To do this on a state or regional basis requires key information such as land cover descriptions, predicted distribution maps for native animals, and an assessment of the level of protection currently given to those plants and animals. GAP works cooperatively with Federal, state, and local natural resource professionals and academics to provide this kind of information. GAP activities focus on the creation of state and regional databases and maps that depict patterns of land management, land cover, and biodiversity. These data can be used to identify “gaps” in conservation--instances where an animal or plant community is not adequately represented on the existing network of conservation lands. GAP is administered through the U.S. Geological Survey. Through building partnerships among disparate groups, GAP hopes to foster the kind of collaboration that is needed to address conservation issues on a broad scale.

GAP Bulletin

The occurrence and significance of polychlorinated biphenyls in the environment

SUMMARY: Polychlorinated biphenyls constitute a group of chlorine-bearing compounds of industrial origin that have permeated the natural environment throughout the world. Their chemical structure resembles that of some of the organochlorine pesticides. They are troublesome interferences in gas chromatographic analysis of these pesticides. Although methods have been developed to overcome analytical problems, measurements of quantity still are only approximate. Special studies in the United States, Netherlands, and Great Britain have traced PCB's to industrial effluent, but other possible sources have not been followed. Their use in paints, cartons, and insulating fluids suggests that environmental pollution may be from many different sources. PCB's are present in fish and wildlife in many countries of the world. Quantities are higher in animals living near industrial areas. PCB's build up in biological food chains with increases of tens to thousands of times from lower to higher organisms. Experimental studies have shown that PCB's have a toxicity to mallards, pheasants, bobwhite quail, coturnix quail, red-winged blackbirds, starlings, cowbirds, and grackles that is of the same order as the toxicity of DDE to these species. Overt signs of poisoning also are similar to those caused by compounds of the DDT group. Toxic effects of DDE and Aroclor 1254 to coturnix chicks were additive, but not synergistic. PCB's containing higher percentages of chlorine are more toxic to birds than those containing lower percentages. PCB's of foreign manufacture contained contaminants to an extent that greatly increased their toxicity Aroclor 1242. Statistical evaluations of the role that different chemicals may play in thinning of eggshells of brown pelicans show that DDE residues correlate better with shell thinning than do residues of dieldrin or PCB's. Studies of the effects of PCB's in the environment are as yet insufficient for well-rounded conclusions. The evidence available indicates that they must be viewed as potential problems until fuller data can be assembled. Toxicity to insects of PCB's of different degrees of chlorination is the reverse of the pattern in birds: the lower chlorinations are more toxic to insects. PCB's enhanced the toxicity of dieldrin and DDT to insects. Shrimp are very sensitive to PCB's and most will die as a result of 20-day exposure to a concentration of 5 ppb. PCB's also inhibit shell growth of oysters. Fish and crabs are less sensitive; all accumulate residues to many times the concentrations in the water, and a test with crabs showed that they lost the residues very slowly. Residues of PCB's in the brains of birds killed by these compounds measure in the hundreds of parts per million. PCB's may have contributed to mortality of some birds in the field. PCB's induce microsomal enzyme activity in birds and mammals and the lower chlorinated mixtures have estrogenic activity in rats. Exposure to PCB's increased the susceptibility of mallard ducklings to duck hepatitis virus. Offspring of pheasants whose parents received high dosages of PCB's made poor choices in visual cliff tests. Egg production and hatching after pipping also were affected. Long-term studies of the reproductive effects of Aroclor 1254 on mallards and bobwhite quail and of Aroclor 1254 plus DDE on quail showed no significant differences from controls. In studies of chickens, however, egg production, hatchability, and shell thickness were impaired by high doses of Aroclor 1254 and by low doses of Aroclor 1242. Statistical evaluations of the role that different chemicals may play in thinning of eggshells of brown pelicans show that DDE residues correlate better with shell thinning than do residues of dieldrin or PCB's. Studies of the effects of PCB's in the environment are as yet insufficient for well-rounded conclusions. The evidence available indicates that they must be

Transactions of the North American Wildlife and Na

The shifting climate portfolio of the Greater Yellowstone Area

Knowledge of climatic variability at small spatial extents (< 50 km) is needed to assess vulnerabilities of biological reserves to climate change. We used empirical and modeled weather station data to test if climate change has increased the synchrony of surface air temperatures among 50 sites within the Greater Yellowstone Area (GYA) of the interior western United States. This important biological reserve is the largest protected area in the Lower 48 states and provides critical habitat for some of the world&rsquo;s most iconic wildlife. We focused our analyses on temporal shifts and shape changes in the annual distributions of seasonal minimum and maximum air temperatures among valley-bottom and higher elevation sites from 1948&ndash;2012. We documented consistent patterns of warming since 1948 at all 50 sites, with the most pronounced changes occurring during the Winter and Summer when minimum and maximum temperature distributions increased. These shifts indicate more hot temperatures and less cold temperatures would be expected across the GYA. Though the shifting statistical distributions indicate warming, little change in the shape of the temperature distributions across sites since 1948 suggest the GYA has maintained a diverse portfolio of temperatures within a year. Spatial heterogeneity in temperatures is likely maintained by the GYA&rsquo;s physiographic complexity and its large size, which encompasses multiple climate zones that respond differently to synoptic drivers. Having a diverse portfolio of temperatures may help biological reserves spread the extinction risk posed by climate change.

Montana, Wyoming

Bioassessment of Hollis Creek, Oktibbeha County, Mississippi

Physical, chemical and biological components at five stations on Hollis Creek, Oktibbeha County, Mississippi were evaluated using Rapid Bioassessment Protocols (RBP) and the Sediment Quality Triad (SQT) on August 24-26, 1999, in order to assess potential biological impacts from the Starkville Waste Water Treatment Facility (WWTF) on downstream resources. Two stations were selected above the WWTF and three below. The WWTF discharges treated effluent into Hollis Creek, but during storm events raw sewage may be released. Hollis Creek is a tributary of the Noxubee River that traverses the northern portion of Noxubee National Wildlife Refuge, which is managed as bottomland hardwood forest land for the protection of fish and wildlife resources. Hollis Creek was channelized throughout most of its length, resulting in high, unstable banks, degraded stream channel and unstable substratum. The RBP scores for the habitat evaluations from each station indicated that Stations 1 and 2 had degraded habitat compared to the reference site, Station 5. Benthic macroinvertebrate and fish assemblages also indicated that the biological integrity at Stations 1 and 2 was less than that of the downstream stations. The SQT showed that Stations 1 and 2 were degraded and the most likely causes of the impairment were the elevated concentrations of polycylclic aromatic hydrocarbons and metals in the sediments; Hyalella azteca survival in pore water and growth in solid-phase sediment exposures were reduced at these upstream sites. The source of contaminants to the upper reaches appears to be storm-water runoff. The close concordance between the RBP and SQT in identifying site degradation provided a preponderance of evidence indicating that the upper reaches (Stations 1 and 2) of Hollis Creek were impacted. Biological conditions improved downstream of the WWTF, even though physical degradation steinming from channelization activities were still evident. The increased discharge and stabilized base flow provided by the WWTF appeared to benefit the physically-altered stream system. Impairment attributable to releases from the WWTF on downstream biological resources was not evident from this evaluation, and the potential for degradation in the Noxubee River and National Wildlife Refuge appears minimal.

Book

A system dynamics model to understand the integrated ecological and human dimension aspects of wildlife health and disease management

Chronic wasting disease (CWD) presents an ongoing challenge for the management of deer populations and sustaining harvest opportunities across North America. Existing disease models often fail to fully capture the complex interplay between disease dynamics, host ecology, and socio-economic factors. We developed a comprehensive system dynamics (SD) model that integrates demographic, epidemiological, ecological, and socio-economic processes within a single model to more fully characterize the complex network of causal feedbacks throughout the system. The model was calibrated using a Bayesian approach that incorporates prior knowledge to generate biologically interpretable outcomes, even with sparse data. For estimating the joint posterior distribution of model parameters, we leveraged time series of deer abundance, harvest composition, genetic profiles, CWD surveillance, and hunter demographics and behavior. Model outputs reproduced key system behaviors, including observed CWD prevalence trends, deer population dynamics, and hunter license purchasing patterns. Model predictions were most sensitive to parameters governing initial deer population size and recruitment. While model predictions generally aligned with observed data, discrepancies in early CWD detection and overestimation of the reactivation of long-inactive hunters reflect data limitations and modeling challenges. Key results suggest that indirect transmission is necessary to explain observed prevalence, that transmission is moderately density-dependent, and that observed population-level genetic shifts driven by CWD may play a role in transmission and progression. The SD modelling approach enabled estimation of difficult-to-measure parameters and identified potential leverage points for management—such as prioritizing increasing participation in antlerless harvest of existing hunters over the recruitment of new hunters. This integrated modeling approach offers a flexible foundation for adaptive wildlife disease management and emphasizes the value of unifying biological and human dimension processes to better inform effective, evidence-based policy.

BioRxiv

Quantitative support for the benefits of proactive management for wildlife disease control

Finding effective pathogen mitigation strategies is one of the biggest challenges humans face today. In the context of wildlife, emerging infectious diseases have repeatedly caused widespread host morbidity and population declines of numerous taxa. In areas yet unaffected by a pathogen, a proactive management approach has the potential to minimize or prevent host mortality. However, typically critical information on disease dynamics in a novel host system is lacking, empirical evidence on efficacy of management interventions is limited, and there is a lack of validated predictive models. As such, quantitative support for identifying effective management interventions is largely absent, and the opportunity for proactive management is often missed. We considered the potential invasion of the chytrid fungus, Batrachochytrium salamandrivorans (Bsal), whose expected emergence in North America poses a severe threat to hundreds of salamander species in this global salamander biodiversity hotspot. We developed and parameterized a dynamic multistate occupancy model to forecast host and pathogen occurrence, following expected emergence of the pathogen, and evaluated the response of salamander populations to different management scenarios. Our model forecasted that taking no action is expected to be catastrophic to salamander populations. Proactive action was predicted to maximize host occupancy outcomes relative to wait-and-see reactive management, thus providing quantitative support for proactive management opportunities. The eradication of Bsal was unlikely under all the evaluated management options. Contrary to our expectations, even early pathogen detection had little effect on Bsal or host occupancy outcomes. Our results provide quantitative support that proactive management is the optimal strategy for promoting persistence of disease-threatened salamander populations. Our approach fills a critical gap by defining a framework for evaluating management options prior to pathogen invasion and can thus serve as a template for addressing novel disease threats that jeopardize wildlife and human health.

Conservation Biology

Temporal changes in avian community composition in lowland conifer habitats at the southern edge of the boreal zone in the Adirondack Park, NY

Climate change represents one of the most significant threats to human and wildlife communities on the planet. Populations at range margins or transitions between biomes can be particularly instructive for observing changes in biological communities that may be driven by climate change. Avian communities in lowland boreal habitats in the Adirondack Park, located at the North American boreal-temperate ecotone, have been the focus of long-term monitoring efforts since 2007. By documenting long-term changes in community structure and composition, such datasets provide an opportunity to understand how boreal species are responding differently to climate change, and which habitat characteristics may be best able to retain boreal avian communities. We examined three specific questions in order to address how well current biological communities in Adirondack boreal wetland habitats are being maintained in a changing climate: (1) how do trends in occupancy vary across species, and what guilds or characteristics are associated with increasing or decreasing occupancy? (2) how is avian community composition changing differently across sites, and (3) what distinguishes sites which are retaining boreal birds to a higher degree than other sites? Our analysis revealed that (1) boreal species appear to exhibit the largest changes in occupancy among our study locations as compared to the larger avian community, (2) dynamics of community change are not uniform across sites and habitat structure may play an important role in driving observed changes, and (3) the particular characteristics of large open peatlands may allow them to serve as refugia for boreal species in the context of climate change.

New York

Waterfowl breeding habitat in agricultural and nonagricultural land in Manitoba

Waterfowl populations and habitat characteristics were examined on 33 potholes in each of two 16-square-mile study areas of agricultural and nonagricultural land in southwestern Manitoba. The agricultural land potholes, lacking in or incompletely surrounded by trees, received greater use by lesser scaup ( Aythya affinis ), canvasback ( A. valisineria ), redhead ( A. americana ), coot ( Fulica americana ), and three species of grebes ( Podicipedidae ). The nonagricultural land potholes, completely surrounded by trees, were more attractive to blue-winged teal ( Anas discors ), and mallard ( A. platyrhynchos ), and over twice as many dabbler broods were censused there. Abundant, undisturbed nesting cover may have been the reason for greater dabbler use on the nonagricultural land potholes since chemical and biological properties suggest more fertile conditions in the agricultural land.

Manitoba

Strategic science plan Salton Sea restoration project

The Salton Sea is an ecosystem in peril. Its prehistory consists of a series of intermittent lakes dependent on infrequent flooding of the Colorado River, while the modern Salton Sea originated from the desire to harness the flow of the Colorado River for irrigation. What began as an accident of this attempt is now a permanent inland sea supported by wastewater and agricultural drainage rather than Colorado River flood flows. However, environmental degradation is challenging the ability of the Sea to sustain the biological components that society has learned to value as characteristics of this waterbody. Increasing salinity and increasing frequency and magnitude of wildlife losses indicate the Sea is under severe environmental stress. The Salton Sea Restoration Project originated to reverse this degradation, to stabilize fluctuating water levels, and to provide a permanent waterbody that sustains values of the human society that uses it. The project foundation is provided by Public Law (PL) 102-575, passed by Congress in 1992. PL 102-575 directs the Secretary of the Interior to "conduct a research project for the development of a method or combination of methods to reduce and control salinity, provide endangered species habitat, enhance fisheries, and protect human recreational values . . . in the area of the Salton Sea." That PL was followed by the Salton Sea Reclamation Act of 1998 (PL 105-372), which directs the Secretary of the Interior to "complete all studies, including, but not limited to environmental and other reviews, of the feasibility and benefit-cost of various options that permit the continued use of the Salton Sea."

Report

The effects of water levels on Two Lake Ontario Wetlands

Lake Ontario's water levels have been regulated since 1959, after the completion of the St. Lawrence River navigation and hydropower development project. The plan used to guide the regulation (1958-D) has been in effect since 1963 (Bryce, 1982). The purpose of the regulation was to prevent extreme high-water levels which increased erosion on the south shore of Lake Ontario, while protecting the interests of commercial navigation and hydropower production in the St. Lawrence River (T. Brown, personal communication, member of the Board of Control). Major user groups have sought further reductions in the range of lake level fluctuations. However, the biological resources, especially the lake influenced wetlands, benefit from the waterlevel fluctuations. Great Lakes wetlands are the most important habitat for wildlife of the region (Tilton and Schwegler, 1978). We provide information here on the responses of wetland plant communities in two wetlands to changes in lake levels over time.

Book

Barred owl research needs and prioritization in California

Barred owls (Strix varia) have reached high densities within the range of the northern spotted owl (S. occidentalis caurina) and are rapidly increasing in number within the range of the California spotted owl (S. o. occidentalis). Encroaching populations of barred owls pose a significant competitive threat to the viability of both spotted owl subspecies in California. In response, the Director of the California Department of Fish and Wildlife (CDFW) convened the California Barred Owl Science Team (BOST) to identify and address the threat posed by barred owls to spotted owls in California. BOST is composed of subject matter scientists with a goal to provide objective scientific review and recommendations to CDFW to promote the recovery and conservation of spotted owls in California. In this document, BOST identifies, describes, and prioritizes key research needs for barred owls that have the potential to benefit the conservation of spotted owls in California. Key research needs were identified from multiple in-person and remote meetings of BOST, with considerable input from attending representatives from state and federal natural resource agencies. BOST and liaisons recognize that periodic updates of this document will likely be required as more is learned about the ecology of barred owls in California and research needs and priorities evolve. Research that BOST deemed the most likely to provide a rigorous scientific basis for reducing barred owl populations included experimental removals, along with ecological studies expected to generate information that would provide avenues for the effective management of barred owls. Other high priority research needs include research using biological samples obtained during experimental removals to better understand the ecology of barred owls and the threats they pose to spotted owls and associated wildlife. We conclude the document with a discussion of how projects are related to the State Wildlife Action Plan. In Appendix I, we discuss considerations for maximizing the success of proposed removal experiments and ecological research on barred owls.

Report

Geospatial Technology Applications and Infrastructure in the Biological Resources Division

Executive Summary -- Automated spatial processing technology such as geographic information systems (GIS), telemetry, and satellite-based remote sensing are some of the more recent developments in the long history of geographic inquiry. For millennia, humankind has endeavored to map the Earth's surface and identify spatial relationships. But the precision with which we can locate geographic features has increased exponentially with satellite positioning systems. Remote sensing, GIS, thematic mapping, telemetry, and satellite positioning systems such as the Global Positioning System (GPS) are tools that greatly enhance the quality and rapidity of analysis of biological resources. These technologies allow researchers, planners, and managers to more quickly and accurately determine appropriate strategies and actions. Researchers and managers can view information from new and varying perspectives using GIS and remote sensing, and GPS receivers allow the researcher or manager to identify the exact location of interest. These geospatial technologies support the mission of the U.S. Geological Survey (USGS) Biological Resources Division (BRD) and the Strategic Science Plan (BRD 1996) by providing a cost-effective and efficient method for collection, analysis, and display of information. The BRD mission is 'to work with others to provide the scientific understanding and technologies needed to support the sound management and conservation of our Nation's biological resources.' A major responsibility of the BRD is to develop and employ advanced technologies needed to synthesize, analyze, and disseminate biological and ecological information. As the Strategic Science Plan (BRD 1996) states, 'fulfilling this mission depends on effectively balancing the immediate need for information to guide management of biological resources with the need for technical assistance and long-range, strategic information to understand and predict emerging patterns and trends in ecological systems.' Information sharing plays a key role in nearly everything BRD does. The Strategic Science Plan discusses the need to (1) develop tools and standards for information transfer, (2) disseminate information, and (3) facilitate effective use of information. This effort centers around the National Biological Information Infrastructure (NBII) and the National Spatial Data Infrastructure (NSDI), components of the National Information Infrastructure. The NBII and NSDI are distributed electronic networks of biological and geographical data and information, as well as tools to help users around the world easily find and retrieve the biological and geographical data and information they need. The BRD is responsible for developing scientifically and statistically reliable methods and protocols to assess the status and trends of the Nation's biological resources. Scientists also conduct important inventory and monitoring studies to maintain baseline information on these same resources. Research on those species for which the Department of the Interior (DOI) has trust responsibilities (including endangered species and migratory species) involves laboratory and field studies of individual animals and the environments in which they live. Researchboth tactical and strategicis conducted at the BRD's 17 science centers and 81 field stations, 54 Cooperative Fish and Wildlife Research Units in 40 states, and at 11 former Cooperative Park Study Units. Studies encompass fish, birds, mammals, and plants, as well as their ecosystems and the surrounding landscape. Biological Resources Division researchers use a variety of scientific tools in their endeavors to understand the causes of biological and ecological trends. Research results are used by managers to predict environmental changes and to help them take appropriate measures to manage resources effectively. The BRD Geospatial Technology Program facilitates the collection, analysis, and dissemination of data and informat

Information and Technology Report

Feathers and flu: Identifying data gaps in avian influenza host dynamics to prioritize wildlife conservation

Highly pathogenic avian influenza viruses (HPAIV) have had disastrous, worldwide effects on wild birds and domestic poultry since the emergence of the A/goose/Guangdong/1/1996 (Gs/GD/96) lineage. The currently circulating H5N1 clade 2.3.4.4b has an expanded set of susceptible hosts, including many migratory wild birds, and is associated with higher transmission rates, increased susceptibility among wild bird hosts, and a greater number of wildlife reservoirs. Certain wild bird life-history strategies and behaviors have been suggested to explain avian hosts’ susceptibility and exposure to HPAIV. These biological traits include gregariousness, such as colonial nesting and mixed flock foraging, predation or scavenging on wild birds, and association with aquatic habitats. Variation in host infection responses (e.g., infectability, shedding rates and duration, mortality rate, antibody development) informs the overall infection risk across avian species, yet the specific role of biological traits is often inconsistent and unclear across taxa. Moreover, the interactions and potential compounding effects among these biological traits remain largely unknown. To develop a more holistic understanding of cumulative risk across bird species, we integrate existing information on infection risk factors (i.e., susceptibility, immunological response, and behavioral traits) into a qualitative multivariate analysis. This approach enabled us to examine how infection risk factors relate to biological traits (e.g., phylogeny, physiology, behavior, species range) and to begin disentangling their complex interactions. We quantified and summarized these risk factors across host species and qualitatively ranked species by their viral responses along a proposed HPAIV response continuum, guided by expectations of traits and metrics associated with competence or vulnerability to HPAIV. In doing so, we aimed to better understand how viral responses and biological traits synergistically interact to influence cumulative risk across wild bird species. This work broadly expands on the previous avian influenza literature, which has focused on Anseriformes and Charadriiformes as primary viral reservoirs. We tie our findings to effective disease management responses with links to risk components, including descriptions of potential surveillance strategies applied to research and One Health goals, as well as a fuller understanding of how resources may be better deployed for rapid response when spillovers do inevitably occur. Additionally, we identified numerous areas where vital epidemiological information is lacking to best characterize the spread of these viruses. Ultimately, this improved understanding will help identify and inform disease management needs and decision making.

Wildlife Monographs

Reconnaissance investigation of water quality, bottom sediment, and biota associated with irrigation drainage in and near Humboldt Wildlife Management Area, Churchill and Pershing Counties, Nevada, 1990-91

A reconnaissance investigation was begun in 1990 to determine whether the quality of irrigation drainage in and near the Humboldt Wildlife Management Area, Nevada, has caused or has the potential to cause harmful effects on human health, fish, and wildlife or to impair beneficial uses of water. Samples of surface and ground water, bottom sediment, and biota collected from sites upstream and downstream from the Lovelock agricultural area were analyzed for potentially toxic trace elements. Also analyzed were radioactive substances, major dissolved constitu- ents, and nutrients in water, as well as pesticide residues in bottom sediment and biota. In samples from areas affected by irrigation drainage, the following constituents equaled or exceeded baseline concentrations or recommended standards for protection of aquatic life or propagation of wildlife--in water: arsenic, boron, dissolved solids, mercury, molybdenum, selenium, sodium, and un-ionized ammonia; in bottom sediment; arsenic and uranium; and in biota; arsenic, boron, and selenium. Selenium appears to be biomagnified in the Humboldt Sink wetlands. Biological effects observed during the reconnaissance included reduced insect diversity in sites receiving irrigation drainage and acute toxicity of drain water and sediment to test organisms. The current drought and upstream consumption of water for irrigation have reduced water deliveries to the wetlands and caused habitat degradation at Humboldt Wildlife Management Area. During this investigation. Humboldt and Toulon Lakes evaporated to dryness because of the reduced water deliveries.

Water-Resources Investigations Report

Benthic oxygen demand in three former salt ponds adjacent to south San Francisco Bay, California

Sampling trips were coordinated in the second half of 2008 to examine the interstitial water in the sediment and the overlying bottom waters of three shallow (average depth <1 meter) ponds adjacent to the southern reach of San Francisco Bay (herein referred to as South Bay), which were previously used in commercial salt production. In recent years, the ponds were modified for wetland restoration and management as part of the South Bay Salt Pond Restoration Project. A pore-water profiler, modified for dissolved-oxygen sampling, was used to obtain the first centimeter-scale estimates of the vertical concentration gradients for diffusive-flux determinations. This study, a collaboration between scientists from two disciplines within the U.S. Geological Survey (Water Resources and Biological Resources), provides information necessary for developing and refining pond-management strategies and supports efforts to monitor changes in fish and wildlife assemblages associated with the habitat-restoration program. Between August 27 and September 30, 2008, pore-water profilers were successfully deployed in the South Bay salt ponds A16, A14, and A3W (fig. 1; fig. 2; table1), measuring the concentration gradient of dissolved oxygen near the sediment-water interface. In each pond, profilers were deployed in triplicate at two sites: a shallow site (< 1 meter) and a deep site (> 2 meters). The water column at all deployment sites was monitored with dataloggers for ancillary water-quality parameters (including dissolved oxygen, salinity, specific conductance, temperature, and pH) to facilitate the interpretation of benthic-flux results. Calculated diffusive benthic flux of dissolved (0.2-micron filtered) oxygen was consistently negative (that is, drawn from the water column into the sediment) and ranged between -0.5 x 10-6 and -37 x 10-6 micromoles per square centimeter per second (site averages depicted in table 2). Assuming pond areas of 1.0, 1.4, and 2.3 square kilometers for ponds A16, A14, and A3W, respectively, this converts to an oxygen mass flux into the ponds' sediment ranging from -1 to -72 kilograms per day. Diffusive oxygen flux into the benthos (listed as negative) was lowest in pond A14 (-0.5 x 10-6 to -1.8 x 10-6 micromoles per square centimeter per second) compared with diffusive flux estimates for ponds A16 and A3W (site averages -26 x 10-6 to -35 x 10-6 and -34 x 10-6 to -37 x 10-6 micromoles per square centimeter per second, respectively). These initial diffusive-flux estimates are of the order of magnitude of those measured in the South Bay using core-incubation experiments (Topping and others, 2004), which include bioturbation and bioirrigation effects. Estimates of benthic oxygen demand reported herein, based on molecular diffusion, serve as conservative estimates of benthic flux because solute transport across the sediment-water interface can be enhanced by multidisciplinary processes including bioturbation, bioirrigation, ground-water advection, and wind resuspension (Kuwabara and others, 2009).

California