USGS ScienceSearch

USGS · 70278767

A system dynamics model to understand the integrated ecological and human dimension aspects of wildlife health and disease management

Abstract

Chronic wasting disease (CWD) presents an ongoing challenge for the management of deer populations and sustaining harvest opportunities across North America. Existing disease models often fail to fully capture the complex interplay between disease dynamics, host ecology, and socio-economic factors. We developed a comprehensive system dynamics (SD) model that integrates demographic, epidemiological, ecological, and socio-economic processes within a single model to more fully characterize the complex network of causal feedbacks throughout the system. The model was calibrated using a Bayesian approach that incorporates prior knowledge to generate biologically interpretable outcomes, even with sparse data. For estimating the joint posterior distribution of model parameters, we leveraged time series of deer abundance, harvest composition, genetic profiles, CWD surveillance, and hunter demographics and behavior. Model outputs reproduced key system behaviors, including observed CWD prevalence trends, deer population dynamics, and hunter license purchasing patterns. Model predictions were most sensitive to parameters governing initial deer population size and recruitment. While model predictions generally aligned with observed data, discrepancies in early CWD detection and overestimation of the reactivation of long-inactive hunters reflect data limitations and modeling challenges. Key results suggest that indirect transmission is necessary to explain observed prevalence, that transmission is moderately density-dependent, and that observed population-level genetic shifts driven by CWD may play a role in transmission and progression. The SD modelling approach enabled estimation of difficult-to-measure parameters and identified potential leverage points for management—such as prioritizing increasing participation in antlerless harvest of existing hunters over the recruitment of new hunters. This integrated modeling approach offers a flexible foundation for adaptive wildlife disease management and emphasizes the value of unifying biological and human dimension processes to better inform effective, evidence-based policy.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Stephanie R. Penk, Christine Anhalt-Depies, Richard Eugene Waggaman Berl, Thomas S. Fiddaman, Kawika Pierson, Jennifer L. Price Tack, Bryan Richards, Erica Rieder, Daniel J. Storm, C. LeAnn White, Daniel P. Walsh. 2025. A system dynamics model to understand the integrated ecological and human dimension aspects of wildlife health and disease management. https://doi.org/10.1101/2025.09.22.677405

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

Estimating greater sage-grouse population sizes within the state of Oregon, USA 2017–2024

We fit an N -mixture model to lek (breeding area) count data to estimate annual population sizes of greater sage-grouse ( Centrocercus urophasianus ; sage-grouse) within the state of Oregon, USA between 2017–2024. Population estimates were delineated among 24 Priority Areas for Conservation (PACs) and considered additional sources of information including male-to-female sex ratios, lek attendance rates, numbers of unmodeled leks, and the existence of unsampled/unknown leks. In 2024, the state of Oregon was estimated to contain approximately 41,875 sage-grouse (95% credible interval [CRI] = 38,980–54,634), which was down from a high of 50,869 (95% CRI = 41,794–66,238) in 2017. A nadir (low point) was identified during 2019, when the median statewide population estimate was 30,644 birds. A complete population oscillation was not evident during the inferential period based on local maxima that were observed during the start (2017) and stop (2024) years of analysis. In addition to estimating population sizes, we evaluated N -mixture model estimates for precision and accuracy after randomly removing single and repeat counts in 10% increments (relative to total sample size). We estimated an increase in absolute bias of approximately 1.6% for every 10% reduction in effort.

BioRxiv

Decision analysis in support of proactive planning for chronic wasting disease in Vermont, USA

Chronic wasting disease (CWD), a fatal, transmissible disease in white-tailed deer ( Odocoileus virginianus ) and related species, is spreading across North America but has not yet been detected in Vermont, United States (U.S.). The Vermont Department of Fish and Wildlife, along with partner agencies, wants to develop a proactive prevention and response plan in anticipation of the eventual detection of the disease. Between September 2023 and September 2025, staff from the U.S. Geological Survey and the University of Vermont facilitated a structured decision-making (SDM) process with seven State and Federal agencies that have jurisdiction over some aspect of CWD management in Vermont. The aim of this process was to generate and evaluate alternative response plans against a range of long-term objectives important to the agencies. To aid in the evaluation of the alternatives, we developed a linked set of models for white-tailed deer population and disease dynamics, hunter participation and health, forest health, economic consequences, and agricultural opportunities related to the actions being contemplated as part of the response plan. We evaluated over 256 different permutations of management actions and used multi-criteria decision analysis, a branch of decision analysis designed to help decision makers navigate tradeoffs among competing objectives, to summarize the performance of those alternative strategies against the desired outcomes. Proactive actions—those designed to slow the arrival of CWD to Vermont—were moderately effective, but the most important proactive action was surveillance to detect the disease early after arrival, which triggered response actions after detection. With the insights generated by the SDM process and the results of the analyses, the participating agencies were able to identify a preferred strategy and outline the elements of a proactive response plan. This report describes the SDM process, the technical details of the modeling work, and the results of the analyses. It is intended to serve as the technical basis for Vermont’s response plan.

BioRxiv

A Lake Charr pangenome reveals highly conserved Ohnologs as drivers of phenotypic diversity

Whole-genome duplication (WGD) is hypothesized to spur evolutionary diversification by producing genome-wide duplicate gene sets (Ohnologs) that are initially functionally redundant but can diverge markedly as the effects of relaxed selection accumulate over time. However, the underlying mechanisms remain unclear, in part because genomic studies often reconstruct Ohnolog evolution over millions of years, during which subsequent mutations can obscure deep-time signals. Investigating the relationship between Ohnolog evolution and diversification on a contemporary timescale offers clearer insights. We explore this relationship in Lake Charr ( Salvelinus namaycush ), where ∼10% of genes are retained highly conserved polyploid duplicates following the Salmonid-Specific Fourth Round WGD. Using 31 chromosome-level assemblies of Lake Charr from morphologically and ecologically diverse populations, joined into a pangenome graph, we characterized 189,555 structural variants (SVs) that were significantly less likely to affect genes retained as sequence-conserved Ohnolog pairs, nuancing the hypothesis that gene redundancy, relaxed selection, and functional diversification are intertwined. However, we found that SVs affecting such conserved Ohnologs may be potent drivers of adaptive evolution. Notably, we identified a putative 938-Kb interchromosomal translocation containing 25 genes with highly conserved Ohnologs in a paralogous (but untranslocated) genomic block. This putative translocation appears to have facilitated Ohnolog divergence in ankrd11 and hp , genes putatively linked to craniofacial and lipid metabolic diversity in sympatric Lake Superior morphs. This research reveals that conserved Ohnologs previously presumed to be redundant remain a reservoir for adaptive change.

BioRxiv