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At least 343 records · Page 19Linked to original sources

USGS2009

In vitro biology of fibropapilloma-associated turtle herpesvirus and host cells in Hawaiian green turtles (Chelonia mydas)

Fibropapillomatosis (FP) of green turtles has a global distribution and causes debilitating tumours of the skin and internal organs in several species of marine turtles. FP is associated with a presently non-cultivable alphaherpesvirus Chelonid fibropapilloma-associated herpesvirus (CFPHV). Our aims were to employ quantitative PCR targeted to pol DNA of CFPHV to determine (i) if DNA sequesters by tumour size and/or cell type, (ii) whether subculturing of cells is a viable strategy for isolating CFPHV and (iii) whether CFPHV can be induced to a lytic growth cycle in vitro using chemical modulators of replication (CMRs), temperature variation or co-cultivation. Additional objectives included determining whether non-tumour and tumour cells behave differently in vitro and confirming the phenotype of cultured cells using cell-type-specific antigens. CFPHV pol DNA was preferentially concentrated in dermal fibroblasts of skin tumours and the amount of viral DNA per cell was independent of tumour size. Copy number of CFPHV pol DNA per cell rapidly decreased with cell doubling of tumour-derived fibroblasts in culture. Attempts to induce viral replication in known CFPHV-DNA-positive cells using temperature or CMR failed. No significant differences were seen in in vitro morphology or growth characteristics of fibroblasts from tumour cells and paired normal skin, nor from CFPHV pol-DNA-positive intestinal tumour cells. Tumour cells were confirmed as fibroblasts or keratinocytes by positive staining with anti-vimentin and anti-pancytokeratin antibodies, respectively. CFPHV continues to be refractory to in vitro cultivation.

Hawai'i↗

USGS2012

The impact of biotic/abiotic interfaces in mineral nutrient cycling: A study of soils of the Santa Cruz chronosequence, California

Biotic/abiotic interactions between soil mineral nutrients and annual grassland vegetation are characterized for five soils in a marine terrace chronosequence near Santa Cruz, California. A Mediterranean climate, with wet winters and dry summers, controls the annual cycle of plant growth and litter decomposition, resulting in net above-ground productivities of 280–600 g m −2 yr −1 . The biotic/abiotic (A/B) interface separates seasonally reversible nutrient gradients, reflecting biological cycling in the shallower soils, from downward chemical weathering gradients in the deeper soils. The A/B interface is pedologically defined by argillic clay horizons centered at soil depths of about one meter which intensify with soil age. Below these horizons, elevated solute Na/Ca, Mg/Ca and Sr/Ca ratios reflect plagioclase and smectite weathering along pore water flow paths. Above the A/B interface, lower cation ratios denote temporal variability due to seasonal plant nutrient uptake and litter leaching. Potassium and Ca exhibit no seasonal variability beneath the A/B interface, indicating closed nutrient cycling within the root zone, whereas Mg variability below the A/B interface denotes downward leakage resulting from higher inputs of marine aerosols and lower plant nutrient requirements. The fraction of a mineral nutrient annually cycled through the plants, compared to that lost from pore water discharge, is defined their respective fluxes F j,plants = q j,plants /( q j,plants + q j,discharge ) with average values for K and Ca ( F K,plants = 0.99; F Ca,plants = 0.93) much higher than for Mg and Na ( F Mg,plants 0.64; F Na,plants = 0.28). The discrimination against Rb and Sr by plants is described by fractionation factors ( K Sr/Ca = 0.86; K Rb/K = 0.83) which are used in Rayleigh fractionation-mixing calculations to fit seasonal patterns in solute K and Ca cycling. K Rb/K and K 24 Mg / 22 Mg "> K24Mg/22Mg values (derived from isotope data in the literature) fall within fractionation envelopes bounded by inputs from rainfall and mineral weathering. K Sr/Ca and K 44 Ca / 40 Ca "> K44Ca/40Ca fractionation factors fall outside these envelopes indicating that Ca nutrient cycling is closed to these external inputs. Small net positive K and Ca fluxes (6–14 mol m −2 yr −1 ), based on annual mass balances, indicate that the soils are accumulating mineral nutrients, probably as a result of long-term environmental disequilibrium.

California↗

USGS2016

Marine disease impacts, diagnosis, forecasting, management and policy

As Australians were spending millions of dollars in 2014 to remove the coral-eating crown of thorns sea star from the Great Barrier Reef, sea stars started washing up dead for free along North America's Pacific Coast. Because North American sea stars are important and iconic predators in marine communities, locals and marine scientists alike were alarmed by what proved to be the world's most widespread marine mass mortality in geographical extent and species affected, especially given its mysterious cause. Investigative research using modern diagnostic techniques implicated a never-before-seen virus [ 1 ]. The virus inspired international attention to marine diseases, including this theme issue.

Philosophical Transactions of the Royal Society B:↗

USGS2021

Multidecadal comparison of Red-footed Booby Sula sula diet at Ulupa'u Crater, O'ahu, Hawai'i

We describe the diet of Red-footed Boobies Sula sula nesting at Ulupaʻu Crater, Oʻahu, Hawaiʻi based on 106 regurgitations collected during 2014 and 2015. We also compare our results to a diet study at this colony five decades earlier. Both studies indicate that flying squid (Ommastrephidae) and flyingfish (Exocoetidae) are important prey for this population while provisioning chicks. In particular, purpleback flying squid Sthenoteuthis oualaniensis occurred in the majority (>70%) of the recent regurgitation samples, and their size (mantle length <11 cm) indicates that they were mostly juveniles. Moreover, the size distribution of the squid prey varied by year, indicating interannual variability in phenology of spawning and larval development. This study highlights the Red-footed Boobys reliance on the juveniles of this poorly-studied squid, and underscores their value as biological samplers of epipelagic fish and squid within their foraging areas.

Hawaii↗

USGS2024

Sight and blindness: The relationship between ostracod eyes, water depth, and light availability in the Arctic Ocean

Eye loss has been a long-standing interest in evolutionary biology. Many organisms that inhabit environments without light penetration, for example the deep sea, exhibit eye loss and thus become blind. However, water-depth distribution of eyes in marine organisms is poorly understood. Ostracods are widely distributed crustaceans, and many sighted marine ostracods have eye tubercles (lenses) on their shells. Since eye tubercles are visible on the shells illustrated in much literature, it is easy to determine their presence or absence via a literature survey. Here, we used a large Arctic-wide ostracod census dataset (Arctic Ostracode Database) to calculate the eye index (the percentage of species with eyes), and compare them with water depth and light availability. As water depth increases, eye index values decrease and become constantly zero in water deeper than 1000 m. Similar decline of sighted species with increasing depth is also known in isopods and amphipods, suggesting that it may be common in other crustaceans and perhaps in deep-sea organisms in general. We also show that eye index values increase as light availability increases. This study is the first to quantify how distributions of sighted and blind species change with light availability, giving baseline information on vision in the deep sea.

Limnology and Oceanography↗

USGS1983

Geologic evolution of Hess Rise, central North Pacific Ocean

Cores from four Deep Sea Drilling Project (DSDP) sites (310, 464, 465, and 466) and seismic-reflection profiles provide data that are used to interpret the geological evolution and paleoenvironments of Hess Rise, a prominent oceanic plateau in the central North Pacific Ocean. Hess Rise apparently formed in the Southern Hemisphere along the western flank of the Pacific-Farallon Ridge 110 to 100 m.y. B.P. Core stratigraphies and lithologies show the response of sedimentation to subsidence and northward movement of Hess Rise on the Pacific plate. Oceanic islands, which crowned Hess Rise during its early evolution, were eroded and subsequently subsided below sea level. Major structural trends include three northwest-trending (∼327°) arms, or ridges, and an east-northeast-trending southern Hess Rise that parallels the Mendocino Fracture Zone (060°). Normal faults offset basement as much as 3,000 m along the southern edge and 1,500 m on the western flank of Hess Rise. Many faults were active during sedimentation. Tholeiitic basalt from the base of Hole 464, trachyte from the base of Hole 465A, and alkalic basalt clasts within sediment of Hole 466 show the diversity of rock types that constitute the igneous basement. A major rock unit is middle Cretaceous limestone, chalk, and minor chert that form the basal sedimentary unit. Some limestone samples, rich in organic carbon, reflect accumulation above the carbonate compensation depth (CCD) within a mid-water oxygen minimum zone. The organic-carbon-rich sediments probably were deposited on the submarine slopes of islands and banks that were at upper bathyal depths as Hess Rise crossed the wide equatorial divergence where increased upwelling and biogenic productivity contributed to high accumulation rates. The source of organic matter was mostly lipid-rich, autochthonous, marine organic matter. Analyses of sediment samples from across the Cretaceous-Tertiary boundary at Site 465 show that there was a significant decrease in surface water temperature and biological productivity. An abrupt increase in transition metals and iridium suggests that an outside source, perhaps extraterrestrial, was the cause for many of the sudden oceanographic, geochemical, and biological changes at the boundary.

GSA Bulletin↗

USGS2016

87 Sr/ 86 Sr isotope ratio analysis by laser ablation MC-ICP-MS in scales, spines, and fin rays as a nonlethal alternative to otoliths for reconstructing fish life history

Strontium isotope ratios ( 87 Sr/ 86 Sr) in otoliths are a well-established tool to determine origins and movement patterns of fish. However, otolith extraction requires sacrificing fish, and when working with protected or endangered species, the use of nonlethal samples such as scales, spines, and fin rays is preferred. Unlike otoliths that are predominantly aragonite, these tissues are composed of biological apatite. Laser ablation multicollector inductively coupled plasma mass spectrometry (LA-MC-ICP-MS) analysis of biological apatite can induce significant interference on mass 87, causing inaccurate 87 Sr/ 86 Sr measurements. To quantify this interference, we applied LA-MC-ICP-MS to three marine samples (white seabass ( Atractoscion nobilis ) otolith; green sturgeon ( Acipenser medirostris ) pectoral fin ray; salmon shark ( Lamna ditropis ) tooth), and freshwater walleye ( Sander vitreus ) otoliths, scales, and spines). Instrument conditions that maximize signal intensity resulted in elevated 87 Sr/ 86 Sr isotope ratios in the bioapatite samples, related to a polyatomic interference ( 40 Ca 31 P 16 O, 40 Ar 31 P 16 O). Retuning instrument conditions to reduce oxide levels removed this interference, resulting in accurate 87 Sr/ 86 Sr ratios across all tissue samples. This method provides a novel, nonlethal alternative to otolith analysis to reconstruct fish life histories.

Wyoming↗

USGS2026

Working group on American Eel (WGAMEEL; outputs from 2024 meeting)

The Working Group on American Eel (WGAMEEL) met virtually three times in 2022-2024 to address the five Terms of Reference (ToRs) of its three-year term. The first two ToRs tasked WGAMEEL with listing and evaluating data on American eel landings, abundance indices, and spatial and habitat data and also to describe assessment methods used in Canada and the US. Canada-wide American eel trajectory was estimated using 12 fishery-independent datasets. Generally, longer datasets had more negative trends than shorter ones. Limiting data to the post-2000 years produced fewer negative trends that did not differ from zero, suggesting the observed declines occurred pre-2000. Spatial modelling for American eel requires knowledge and mapping that covers the breadth of habitat types occupied by the species, including freshwater, estuarine, and marine environments. In recent years there has been an expansion of online databases with data from the aquatic environment, particularly in freshwater, with estuarine and marine data less consistently documented. This report broadly compiles abiotic data series of relevance to American eel. A larger challenge for spatial modelling will be acquiring enough high quality, georeferenced biological data sets with suitable observations to assess occurrence, abundance, and trends over time in a spatial framework. The third ToR considered Indigenous Knowledge Systems for American eel. A survey reaching First Nations representatives from four Canadian provinces confirmed the cultural importance of eels in Indigenous communities, and that Indigenous knowledge possessed by the participant groups are place-based and contextual, especially regarding threats impacting eels. The final two ToRs focused on identifying stock assessment modelling approaches applicable to American and European eel, and assessing whether any of these approaches might be appropriate for American eel management moving forward. WGAMEEL evaluated the various approaches for assessing American eel or providing management advice. Two approaches that could be completed in the next few years because of their minimal data needs are index-based methods and catch-only method. A suite of approaches considered by WGAMEEL that would take more time and data were spatial or habitat models, management strategy evaluation, and spawner-per-recruit (SPR) models potentially paired with meta-population models.

ICES Scientific Reports↗

USGS2003

Continuous measurement of suspended-sediment discharge in rivers by use of optical backscatterance sensors

Optical sensors have been used to measure turbidity and suspended-sediment concentration by many marine and estuarine studies, and optical sensors can provide automated, continuous time series of suspended-sediment concentration and discharge in rivers. Three potential problems with using optical sensors are biological fouling, particle-size variability, and particle-reflectivity variability. Despite varying particle size, output from an optical backscatterance sensor in the Sacramento River at Freeport, California, USA, was calibrated successfully to discharge-weighted, cross-sectionally averaged suspended-sediment concentration, which was measured with the equal discharge-, or width-increment, methods and an isokinetic sampler. A correction for sensor drift was applied to the 3-year time series. However, the calibration of an optical backscatterance sensor used in the Colorado River at Cisco, Utah, USA, was affected by particle-size variability. The adjusted time series at Freeport was used to calculate hourly suspended-sediment discharge that compared well with daily values from a sediment station at Freeport. The appropriateness of using optical sensors in rivers should be evaluated on a site-specific basis and measurement objectives, potential particle size effects, and potential fouling should be considered.

California, Utah↗

USGS1998

Vulnerability of coastal wetlands in the Southeastern United States: climate change research results, 1992-97

As part of the USGCRP research framework on coastal lands and ecosystems, the Biological Resources Division of the U.S. Geological Survey (National Wetlands Research Center) entered into partnership with Rice University, Louisiana State University, Duke University, Clemson University, University of Southwestern Louisiana, University of Georgia, and the Virginia Institute of Marine Studies (University of Virginia ) to (1) document the current state vulnerability of coastal ecosystems including an assessment of past changes in land cover, (2) develop an understanding of the processes which underlie these changes, and (3) predict the extent of future alterations to these habitats and the consequences for the sustainability of the resource and land base. This document summarized the initial findings of our collaborative efforts. Overall, the studies exemplify an integrated approach addressing questions at the species, community, and landscape levels of organization and focusing on factors related to hydroperiod, sea-level rise, disturbance events, and coastal marsh submergence.

Biological Science Report↗

USGS2015

Exploration of the canyon-incised continental margin of the northeastern United States reveals dynamic habitats and diverse communities

The continental margin off the northeastern United States (NEUS) contains numerous, topographically complex features that increase habitat heterogeneity across the region. However, the majority of these rugged features have never been surveyed, particularly using direct observations. During summer 2013, 31 Remotely-Operated Vehicle (ROV) dives were conducted from 494 to 3271 m depth across a variety of seafloor features to document communities and to infer geological processes that produced such features. The ROV surveyed six broad-scale habitat features, consisting of shelf-breaching canyons, slope-sourced canyons, inter-canyon areas, open-slope/landslide-scar areas, hydrocarbon seeps, and Mytilus Seamount. Four previously unknown chemosynthetic communities dominated by Bathymodiolus mussels were documented. Seafloor methane hydrate was observed at two seep sites. Multivariate analyses indicated that depth and broad-scale habitat significantly influenced megafaunal coral (58 taxa), demersal fish (69 taxa), and decapod crustacean (34 taxa) assemblages. Species richness of fishes and crustaceans significantly declined with depth, while there was no relationship between coral richness and depth. Turnover in assemblage structure occurred on the middle to lower slope at the approximate boundaries of water masses found previously in the region. Coral species richness was also an important variable explaining variation in fish and crustacean assemblages. Coral diversity may serve as an indicator of habitat suitability and variation in available niche diversity for these taxonomic groups. Our surveys added 24 putative coral species and three fishes to the known regional fauna, including the black coral Telopathes magna , the octocoral Metallogorgia melanotrichos and the fishes Gaidropsarus argentatus , Guttigadus latifrons , and Lepidion guentheri . Marine litter was observed on 81% of the dives, with at least 12 coral colonies entangled in debris. While initial exploration revealed the NEUS region to be both geologically dynamic and biologically diverse, further research into the abiotic conditions and the biotic interactions that influence species abundance and distribution is needed.

Northeastern United States, Gulf of Maine, Georges↗

USGS2004

Maps showing estimated sediment yield from coastal landslides and active slope distribution along the Big Sur coast, Monterey and San Luis Obispo Counties, California

The 1982-83 and 1997-98 El Ni?os brought very high precipitation to California?s central coast; this precipitation resulted in raised groundwater levels, coastal flooding, and destabilized slopes throughout the region. Large landslides in the coastal mountains of Big Sur in Monterey and San Luis Obispo Counties blocked sections of California State Route 1, closing the road for months at a time. Large landslides such as these occur frequently in the winter months along the Big Sur coast due to the steep topography and weak bedrock. A large landslide in 1983 resulted in the closure of Highway 1 for over a year to repair the road and stabilize the slope. Resulting work from the 1983 landslide cost over $7 million and generated 30 million cubic yards of debris from landslide removal and excavations to re-establish the highway along the Big Sur coast. Before establishment of the Monterey Bay National Marine Sanctuary (MBNMS) in 1992, typical road opening measures involved disposal of some landslide material and excess material generated from slope stabilization onto the seaward side of the highway. It is likely that some or most of this disposed material, either directly or indirectly through subsequent erosion, was eventually transported downslope into the ocean. In addition to the landslides that initiate above the road, natural slope failures sometimes occur on the steep slopes below the road and thus deliver material to the base of the coastal mountains where it is eroded and dispersed by waves and nearshore currents. Any coastal-slope landslide, generated through natural or anthropogenic processes, can result in sediment entering the nearshore zone. The waters offshore of the Big Sur coast are part of the MBNMS. Since it was established in 1992, landslide-disposal practices came under question for two reasons. The U.S. Code of Federal Regulations, Title 15, Section 922.132 prohibits discharging or depositing, from beyond the boundary of the Sanctuary, any material or other matter that subsequently enters the Sanctuary and injures a Sanctuary resource or quality. The landslide-disposal practices previously used had the potential to alter nearshore zone habitat by converting marine habitats from rocky substrate to soft bottom. In addition, the disposal practices had the potential to increase concentrations of suspended sediment in the nearshore zone, and thereby possibly impact coastal biological communities. On the other hand, natural mass-wasting processes, including coastal cliff erosion coastal and landslides, as well as streams deliver sediment to the coast in unknown quantities and thus provide nutrients as well as source material for beaches. Current road maintenance and repair practices along the Coast Highway 1 corridor that restrict disposal of material within the MBNMS may actually reduce sediment input relative to natural processes.

Scientific Investigations Map↗

USGS2015

Nutrient attenuation in rivers and streams, Puget Sound Basin, Washington

Nutrients such as nitrogen and phosphorus are important for aquatic ecosystem health. Excessive amounts of nutrients, however, can make aquatic ecosystems harmful for biota because enhanced growth and decay cycles of aquatic algae can reduce dissolved oxygen in the water. In Puget Sound marine waters, low dissolved oxygen concentrations are observed in a number of marine nearshore areas, and nutrients have been identified as a major stressor to the local ecosystem. Delivery of nutrients from major rivers in the Puget Sound Basin to the marine environment can be large. Therefore, it is important to identify factors related to how nutrients are retained (attenuated) within streams and rivers in the Puget Sound Basin. Physical, chemical, and biological factors related to nutrient attenuation were identified through a review of related scientific literature. Numerous empirical modeling approaches for estimating nutrient attenuation in streams and rivers also were compiled, and a subset of these models was applied to the Puget Sound Basin. In particular, models based on the physical characteristics of a river reach (RivR-N model) and on the physical and biological features of a river reach (v f model) were used and compared for the 17 major rivers draining to the Puget Sound. Data on the relative amount of instream attenuation (the fraction of nutrient input removed per kilometer of stream reach) showed some common and general themes. Firstly, headwater reaches throughout the Puget Sound Basin tend to be better than the main stems of the major rivers at attenuating nitrate and orthophosphorus (ortho-P). Secondly, rivers are more efficient at attenuating nitrate than ortho-P, probably because of the close relation between phosphorus and suspended sediment, which was not captured fully in the models. Thirdly, when comparing the RivR-N and v f models for nitrate, physical characteristics of the channel may be more effective predictors of relative nitrate attenuation for main stem reaches, whereas biological factors may be more effective predictors in headwater reaches. These results are explained in terms of four primary factors of attenuation: sinuosity, channel slope, specific discharge, and uptake velocity (v f ) of the reach. A simple scoring procedure based on these four factors showed that reaches where attenuation scores were high had higher relative attenuation of nutrients from the RivR-N and v f models. This attenuation "scorecard" can be used to quickly assess the potential for a given reach to attenuate nutrients. Seasonal relative attenuation at three case studies was greater in summer months (July through September) and much lower and almost constant from January through June. An analysis of relative attenuation across a range of nutrient concentrations showed that, at some point, relative instream attenuation is minimized. For nitrate, relative attenuation reached a minimum value greater than 3 milligrams of nitrogen per liter (mg N/L) during low flow and 1 mg N/L during high flow. For orthophosphate, minimum relative attenuation was observed at about 0.1 milligram of phosphorus per liter (mg P/L) for both low- and high-flow conditions. Generally, the temporal dynamics of nutrient attenuation are dependent on the travel time through a given reach, the proportion of flow in contact with the sediment, and the amount of biological activity. Improved understanding of nutrient attenuation in Puget Sound Basin will benefit from the compilation of more detailed data for specific discharge, channel slope, and channel sinuosity in Puget Sound streams and rivers. Additionally, field studies examining upstream-downstream changes in nutrient load and field-based measurements of v f are needed. From a management perspective, preservation and improvement of instream nutrient attenuation should focus on increasing the travel time through a reach and contact time of water sediment (reactive) surfaces and lowering nutrient concentrations (and loads) to avoid saturation of instream attenuation and increase attenuation efficiency. These goals can be reached by maintaining and restoring channel-flood plain connectivity, maintaining and restoring healthy riparian zones along streams, managing point and nonpoint nutrient loads to streams and rivers, and restoring channel features that promote attenuation such as the addition of woody debris and maintaining pool-riffle morphologies. Many of these management approaches are already being undertaken during projects aimed to restore quality salmon habitat. Therefore, there is a dual benefit to these projects that also may lead to enhanced potential for nitrogen and phosphorus attenuation.

Washington↗

USGS2018

A review of literature for gray and harbor seals

Climate change is impacting marine species, causing shifts in occurrence, distribution, and phenology, which can ultimately effect ecosystem structure and functioning (Parmesan & Yohe 2003; Burrows et al. 2011). The study of the timing of recurring biological events throughout an organism’s life is known as phenology (Parmesan & Yohe 2003). The way organisms respond to climate change through altered timing offers insight into their sensitivity and adaptability (Parmesan & Yohe 2003). To gain an understanding of pinniped vulnerability to climate change, specifically through changes in phenology, a comprehensive literature search was conducted using several online databases (e.g., Web of Science, Google Scholar and PubMed). Combinations of relevant terms were searched in order to find studies pertaining to the life history of two regionally important pinniped species: the gray seal (Halichoerus grypus) and the harbor seal (Phoca vitulina). Although special attention was given to studies conducted in the Northwestern Atlantic region, publications giving information on populations in other parts of the world provided important proxy information. Keyword searches were conducted in Web of Science and Google Scholar and represent the published literature through 2017. The remainder of the publications found were cited in the literature returned from the two searches. This document provides an annotated bibliography organized by species (gray and harbor seals) and region, with topical sections for important attributes (e.g. foraging). The focus of this search was for the Gulf of Maine region, but other relevant information yielded by the literature search is presented in order of approximate distance from the focal area.

Report↗

USGS2022

Estuarine Geomorphology, Circulation, and Mixing

To understand the processes affecting the distribution and cycles of particulates, pollutants, nutrients, and organisms in estuaries, it is insufficient to focus solely on the biological and chemical aspects of the processes. Water sources and movements (e.g. evaporation, precipitation, riverine discharge, submarine ground water discharge, wetland hydrology, and tidal exchange) as well as other hydrodynamic aspects of coastal systems, including circulation patterns, stratification, mixing and flushing, must also be considered. When hydrodynamic changes occur quickly relative to biological, geological, and chemical transformations, they become the dominant controlling factors of many ecological processes in estuaries (Officer 1980), and it is now widely recognized that a thorough understanding of the marine estuarine ecology requires comprehensive knowledge and integration of physical processes affecting the system. Using the terminology of a shallow-water oceanographer, this chapter aims to organize, classify, and describe some of these important physical characteristics and processes.

Book chapter↗

USGS2018

Mercury methylation and bioaccumulation in Sinclair Inlet, Kitsap County, Washington

The U.S. Geological Survey evaluated the transformation of mercury to bioavailable methylmercury in Sinclair Inlet, Kitsap County, Washington, and assessed the effect of the transformation processes on the mercury burden in marine organisms and sediment. In August 2008, samples of sediment, water, and biota from six sites in Sinclair Inlet and three bays representative of Puget Sound embayments were collected. The extensive sediment sampling included analysis of methylmercury in sediment and porewater, estimates of methylation production potential, and analyses of ancillary constituents associated with organic carbon and reduction-oxidation (redox) conditions to assist in interpreting the mercury results. Analyses of methylmercury in water overlying incubated cores provided an estimate of the release of methylmercury to the water column. Collection of samples for mercury species in the aqueous, particulate (suspended solids), and biological phases, and for ancillary carbon and nitrogen constituents in surface water, continued, on about a monthly schedule, at four stations through August 2009. In February, June, and August 2009, seasonal sediment samples were collected at 20 stations distributed between greater Sinclair Inlet and Operable Unit B Marine of the Bremerton naval complex, Bremerton, Washington, to examine geographical and seasonal patterns of mercury biogeochemistry of sediment in Sinclair Inlet. At six of these seasonal sediment stations, porewater was collected and triplicate core incubation experiments were done. Median sediment-methylmercury concentrations were not statistically different between the representative bays and Sinclair Inlet. The percentage of sediment methylmercury (relative to total mercury) was actually lower in the Sinclair Inlet sites compared with the representative bays, reflecting the higher sediment total mercury concentration for the Sinclair Inlet stations compared with the representative bays. Likewise, median sediment methylmercury concentrations were not statistically different between the greater Sinclair Inlet stations and the Bremerton naval complex stations; whereas the percentage of sediment methylmercury to total mercury was lower in the Bremerton naval complex due to higher sediment total mercury concentrations than the greater Sinclair Inlet stations. The biogeochemical characteristics of each station, measured by redox, organic carbon, and the seasonal availability of nutrients controlled methylmercury biogeochemistry. Mercury methylation production potential was a function of temperature, concentration of total mercury in sediment, and the percentage of ferrous iron (relative to total measured iron) across all sites. Methylmercury porewater concentrations were best described by using concentrations of dissolved organic carbon and reduction-oxidation conditions. Likewise, the variable fluxes of methylmercury from incubated cores were best described using dissolved organic carbon and reduction-oxidation conditions. Sinclair Inlet exhibited the classic Puget Sound biological cycle, with spring and autumn phytoplankton blooms resulting in depletion of nitrate, orthophosphate, and silicate in the surface water. Although variable in timing between 2008 and 2009, a strong corresponding seasonal trend of increased availability, incorporation, and bioaccumulation of methylmercury into the food web of Sinclair Inlet occurred during the early spring and summer growing season.

Washington↗

USGS2013

Genetics, recruitment, and migration patterns of Arctic Cisco (Coregonus autumnalis) in the Colville River, Alaska and Mackenzie River, Canada

Arctic cisco Coregonus autumnalis have a complex anadromous life history, many aspects of which remain poorly understood. Some life history traits of Arctic cisco from the Colville River, Alaska, and Mackenzie River basin, Canada, were investigated using molecular genetics, harvest data, and otolith microchemistry. The Mackenzie hypothesis, which suggests that Arctic cisco found in Alaskan waters originate from the Mackenzie River system, was tested using 11 microsatellite loci and a single mitochondrial DNA gene. No genetic differentiation was found among sample collections from the Colville River and the Mackenzie River system using molecular markers (P > 0.19 in all comparisons). Model-based clustering methods also supported genetic admixture between sample collections from the Colville River and Mackenzie River basin. A reanalysis of recruitment patterns to Alaska, which included data from recent warm periods and suspected changes in atmospheric circulation patterns, still finds that recruitment is correlated to wind conditions. Otolith microchemistry (Sr/Ca ratios) confirmed repeated, annual movements of Arctic cisco between low-salinity habitats in winter and marine waters in summer.

Polar Biology↗

USGS2015

Human activities and climate variability drive fast-paced change across the world's estuarine-coastal ecosystems

Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2–5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (i) human activities as drivers of change; (ii) variability of the climate system as a driver of change; (iii) successes, disappointments and challenges of managing change at the sea-land interface; and (iv) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine–coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine–coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines.

Global Change Biology↗