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Research about San Francisco Bay

Source-linked reports with geographic coverage including San Francisco Bay.

At least 361 records · Page 20Linked to original sources
USGS1982

Low-frequency variations in sea level and currents in south San Francisco Bay

In order to examine physical process in the subtidal time range, sea-level and current meter data for south San Francisco Bay (South Bay) were filtered using a low-pass digital filter to remove tidal period variations. and then subjected to an empirical orthogonal function analysis. For the sea-level data, there is one dominant empirical mode that is correlated with nonlocal coastal forcing. A small amount of the variance is associated with local wind setup. For the current meter data, there are two dominant empirical modes that correlate with local wind forcing and tidal forcing over the spring-neap cycle. In general, South Bay is dominated by coastal forcing on sea level during all seasons, and dominated by wind and tidal forcing on the residual currants during the summer.

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USGS1982

Does the benthos control phytoplankton biomass in South San Francisco Bay?

South San Francisco Bay, USA, is a shallow coastal embayment that receives large inputs of nutrients (N. P, Si) and small local inputs of freshwater. Phytoplankton dynamics are typically characterized by a spring bloom when surface chlorophyll a increases from < 5 to > 40 mg m -3 . The bloom persists for 2 to 4 wk, and then dissipates. Phytoplankton biomass remains low (chlorophyll a < 5 mg m -3 ) from May through December, although light and nutrient availability are sufficient to sustain growth rates of 1 to 1.5 divisions d -1 in the expansive shallows. Transport processes apparently exert a small influence on phytoplankton biomass, and calculated zooplankton grazing accounts for only a small reduction in net rate of phytoplankton population growth in the shallows. However, suspension-feeding bivalves are sufficiently abundant to filter a volume equivalent to the volume of South Bay at least once daily. These observations suggest that grazing by benthos is the primary mechanism controlling phytoplankton biomass during summer and fall.

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USGS1981

Simulation model of Skeletonema costatum population dynamics in northern San Francisco Bay, California

A pseudo-two-dimensional model is developed to simulate population dynamics of one dominant phytoplankton species ( Skeletonema costatum ) in northern San Francisco Bay. The model is formulated around a conceptualization of this estuary as two distinct but coupled subsystems—a deep (10–20 m) central channel and lateral areas with shallow (<2 m) water and slow circulation. Algal growth rates are governed by solar irradiation, temperature and salinity, while population losses are assumed to result from grazing bycalanoid copepods. Consequences of estuarine gravitational circulation are approximated simply by reducing convective-dispersive transport in that section of the channel (null zone) where residual bottom currents are near zero, and lateral mixing is treated as a bulkexchange process between the channel and the shoals. Model output is consistent with the hypothesis that, because planktonic algae are light-limited, shallow areas are the sites of active population growth. Seasonal variation in the location of the null zone (a response to variable river discharge) is responsible for maintaining the spring bloom of neritic diatoms in the seaward reaches of the estuary (San Pablo Bay) and the summer bloom upstream (Suisun Bay). Model output suggests that these spring and summer blooms result from the same general process—establishment of populations over the shoals, where growth rates are rapid, coupled with reduced particulate transport due to estuarine gravitational circulation. It also suggests, however, that the relative importance of physical and biological processes to phytoplankton dynamics is different in San Pablo and Suisun Bays. Finally, the model has helped us determine those processes having sufficient importance to merit further refinement in the next generation of models, and it has given new direction to field studies.

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USGS1981

Anaerobic oxidation of acetylene by estuarine sediments and enrichment cultures

Acetylene disappeared from the gas phase of anaerobically incubated estuarine sediment slurries, and loss was accompanied by increased levels of carbon dioxide. Acetylene loss was inhibited by chloramphenicol, air, and autoclaving. Addition of 14 C 2 H 2 to slurries resulted in the formation of 14 CO 2 and the transient appearance of 14 C-soluble intermediates, of which acetate was a major component. Acetylene oxidation stimulated sulfate reduction; however, sulfate reduction was not required for the loss of C 2 H 2 to occur. Enrichment cultures were obtained which grew anaerobically at the expense of C 2 H 2 .

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USGS1981

Benthic macrofaunal biomass of San Francisco Bay, California; January, February, and August 1973

Benthic macrofaunal biomass data from San Francisco Bay are presented for 43 stations which were sampled in January/February and August 1973. Biomass data for four major groups (Mollusca, Annelida, Athropoda, and a combination of remaining phyla) and for the groups combined are provided with relative rank at each station for each month. Ancillary data collected concurrently with the macrofaunal samples include water column salinity, temperature, and dissolved oxygen.

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USGS1981

Plankton studies in San Francisco Bay; I, Chlorophyll distributions and hydrographic properties, July 1977-December 1979

This report summarizes the distribution of phytoplankton biomass and selected hydrographic properties measured in the San Francisco Bay Estuary, on a near-monthly basis, from July 1977 through December 1979. Parameters measured were: chlorophyll a, phaeopigments, in-vivo fluorescence, turbidity, size distribution of phytoplankton, salinity and temperature. (USGS)

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USGS1981

Plankton studies in San Francisco Bay; II, Phytoplankton abundance and species composition, July 1977-December 1979

Data are presented on the phytoplankton species composition and abundance in San Francisco Bay from July 1977 through December 1979. Phytoplankton identification and enumerations were made at selected stations. Sample collections were made at selected stations in the main channel of the Bay from Rio Vista on the Sacramento River to Calaveras Point in South San Francisco Bay, and at shoal stations in the central portion of South San Francisco Bay, San Pablo Bay, and Suisun Bay. Also reported, from October 1978 through December 1979, are the calculated phytoplankton carbon and percent nondiatom carbon, and the species list. This study is one component of an ongoing interdisciplinary study of San Francisco Bay. (USGS)

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USGS1981

Observations from moored current meters in San Francisco Bay, 1978

Current-meter data collected at eight stations in the San Francisco Bay estuarine system between August 1978 and December 1978 are compiled in this report. The measurements include current speed and direction, and water temperature and salinity (computed from conductivity and temperature). Data are presented in graphical format with each parameter plotted separately.

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USGS1980

Single and superimposed bedforms: A synthesis of San Francisco Bay and flume observations

Tidal currents with maximum depth-averaged velocities ranging up to 250 cm/sec have generated ripples, two- and three-dimensional sand waves, and upper flat beds on the floor of central San Francisco Bay. Determination of the hydraulic conditions under which the observed beds exist, indicates that the bed configuration at any point in the bay is a function of the local velocity, sediment size, and depth. The bay observations, for flows up to 85 m deep, were combined with shallow-flow observations and a single set of bed-phase boundaries was determined for the combined data. Critical shear velocities calculated for the transitions from ripples to sand waves and from sand waves to upper flat beds, in flows tens of meters deep, are within 10% of critical shear velocities observed for the same transitions in flume flows only tens of centimeters deep. Comparison of bedform sequences suggests that, for flows up to tens of meters deep, beds of 0.25–0.50 mm sand respond to increasing flow velocities by forming ripples, two-dimensional sand waves, three-dimensional sand waves, and flat beds. At any constant depth, equilibrium sand waves increase in height and migration rate as flow velocity increases. The wavelength and maximum height of both two- and three-dimensional sand waves increase with depth also, but migration rates decrease. Because the maximum size of both kinds of bedforms varies with depth, classification schemes based on size arbitrarily separate genetically similar bedforms. In the bay, in contrast to flumes, sand waves having the largest height-to-depth ratios occur in relatively coarse sand. Tidal and seasonal velocity fluctuations are interpreted to be more destructive to finer-grained sand waves, because in finer grain sizes sand waves are stable at a relatively narrow range of velocities. Ripples, sand waves, and upper and lower flat beds are commonly superimposed on larger bedforms. Small bedforms can exist in equilibrium on the larger bedforms because the large bedforms generate boundary layers in which the small bedforms are locally stable. The distribution of small bedforms superimposed on larger bedforms reflects lateral and vertical variations in shear velocity in flow over large bedforms.

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USGS1980

Trends in the distribution of recent foraminifera in San Francisco Bay

Much of the bathymetry of the southern part of San Francisco Bay reflects the drainage pattern of late Pleistocene streams. Holocene estuarine silt and clay cover most of the bay floor; relict eolian and deltaic sand occurs along the eastern shore; sandy patches are present in the main channel owing to higher tidal current velocities. Organic content is high along the western shore, where tidal flats are extensive, and in the slough at the mouth of Coyote Creek where wastewaters discharge. Thirty-one species of benthonic foraminifera were identified in surficial sediments of San Francisco Bay estuary; of these, 20 species were stained red by rose Bengal and are considered as live. Water depth, sediment textural characteristics, salinity, organic matter, sediment pH, and biological competition were considered as factors that might affect distribution of foraminifera. Four ecologic zones based on observed trends in the distribution and abundance of several species correlate well with some environmental factors. Four groups based on the Q-mode analysis of frequency counts of foraminiferal assemblages are reasonably similar to the four ecologic zones. These zones, showing restricted depth ranges, are: Inner Coastal Zone, where Elphidium incertum obscurum and Trochammina infiata are prominent; Outer Coastal Zone, dominated by Ammonia beccarii tepida and Elphidium incatum; Deep Bay Zone, where Elphidietla hannai, Elphidium incertum clavatum, Hopkinsina pacifica, and Bolivina spp. appear in abundance; and Deep Channel Zone, where Elphidiella hannai is most abundant. In the Inner Coastal Zone, salinity due to large fluctuations is a limiting factor for many species. Substrate textural characteristics are primary determinants of the distribution of agglutinated foraminifers. The percentage of organic matter in the sediment correlates well with the abundance of Elphidium incertum obscurum, a ubiquitous species in San Francisco Bay. Sediment pH is not critical. Biologic competition can be estimated by comparing the percentage of a species with the number of species present in the assemblage, as shown for Ammonia beccarii tepida and Elphidiella hannai.

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USGS1979

A two-dimensional hydrodynamic model of a tidal estuary

A finite element model is described which is used in the computation of tidal currents in an estuary. This numerical model is patterned after an existing algorithm and has been carefully tested in rectangular and curve-sided channels with constant and variable depth. One of the common uncertainties in this class of two-dimensional hydrodynamic models is the treatment of the lateral boundary conditions. Special attention is paid specifically to addressing this problem. To maintain continuity within the domain of interest, &lsquo;smooth&rsquo; curve-sided elements must be used at all shoreline boundaries. The present model uses triangular, isoparametric elements with quadratic basis functions for the two velocity components and a linear basis function for water surface elevation. An implicit time integration is used and the model is unconditionally stable. The resultant governing equations are nonlinear owing to the advective and the bottom friction terms and are solved iteratively at each time step by the Newton-Raphson method. Model test runs have been made in the southern portion of San Francisco Bay, California (South Bay) as well as in the Bay west of Carquinez Strait. Owing to the complex bathymetry, the hydrodynamic characteristics of the Bay system are dictated by the generally shallow basins which contain deep, relict river channels. Great care must be exercised to ensure that the conservation equations remain locally as well as globally accurate. Simulations have been made over several representative tidal cycles using this finite element model, and the results compare favourably with existing data. In particular, the standing wave in South Bay and the progressive wave in the northern reach are well represented.

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USGS1979

Water and sediment measurements in San Francisco Bay, California

Water samples collected in San Francisco Bay, the Gulf of the Farallones, and the delta of the Sacramento and San Joaquin rivers were analyzed for salinity, temperature, partial pressure of carbon dioxide (pCO 2 ), chlorophyll a, alkalinity, particulate organic carbon (POC), and the stable carbon isotope ratio ( δ 13 C) of the POC and total CO 2 . Water sampling occurred between January 1976 and March 1977. Bottom sediments for total organic carbon isotopic analyses ( δ 13 C(TOC)) were collected during August 1973. Numerical values are tabulated, sampling locations are identified, and the analytical methods are briefly described.

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