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Research about San Francisco Bay

Source-linked reports with geographic coverage including San Francisco Bay.

At least 343 records · Page 19Linked to original sources
USGS1986

Selenium and heavy metals in San Francisco Bay diving ducks

We analyzed for selenium (Se) and heavy metals in greater scaups ( Aythya marila ) and surf scoters ( Melanitta perspicillata ) collected from southern San Francisco Bay in March and April 1982. There were no differences (P > 0.05) between species for liver concentrations of silver (Ag), mercury (Hg), or lead (Pb). Copper (Cu) (P < 0.001) and zinc (Zn) (P < 0.01) levels were higher in scaups, whereas Se was higher in scoters (P < 0.001). Chromium (Cr) and nickel (Ni) occurred in < 50% of the samples, and there was no difference (P > 0.05) between the 2 species. The geometric mean cadmium (Cd) concentration in scoter kidneys (24.6 ppm, dry wt) was higher than in scaups (15.5 ppm) (0.1 > P > 0.05). Liver concentrations of Hg and Se were correlated (P < 0.01). The toxicological significance of some elements in these species is not known. However, Se levels in scoters (34.4 ppm, dry wt) were similar to those in livers of dabbling ducks (Anas spp.) in the nearby San Joaquin Valley where reproduction was impaired severely.

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USGS1986

Effect of seasonally changing tissue weight on trace metal concentrations in the bivalve Macoma balthica in San Francisco Bay

The influence of seasonal changes in the weight of soft tissues on temporal fluctuations in tissue concentrations of Cu and Zn was examined in 4 populations of the clam Macoma balthica sampled in San Francisco Bay for a period of 2 to 5 yr. Fluctuations in metal concentration expected from changes in tissue weight between sampling dates were estimated by assuming that whole body metal burden was constant during the sampling interval. Comparison of estimated and actual metal concentrations showed that the degree to which fluctuations in trace metal concentrations were driven by weight changes differed considerably among stations, among years at a single station, and between metals.

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USGS1985

Temporal fluctuations in grain size, organic materials and iron concentrations in intertidal surface sediment of San Francisco Bay

The physical and chemical characteristics of the oxidized surface sediment in an estuary fluctuate temporally in response to physical forces and apparently-fluctuating inputs. These characteristics, which include grain size and concentrations of organic materials and iron, will influence both trace-metal geochemistry and bioavailability. Temporal trends in the abundance of fine particles, total organic carbon content (TOC), absorbance of extractable organic material (EOM), and concentration of extractable iron in the sediment of San Francisco Bay were assessed using data sets containing approximately monthly samples for periods of two to seven years. Changes in wind velocity and runoff result in monthly changes in the abundance of fine particles in the intertidal zone. Fine-grained particles are most abundant in the late fall/early winter when runoff is elevated and wind velocities are low; particles are coarser in the summer when runoff is low and wind velocities are consistently high. Throughout the bay, TOC is linearly related to fine particle abundance (r = 0.61). Temporal variability occurs in this relationship, as particles are poor in TOC relative to percent of fine particles in the early rainy season. Iron-poor particles also appear to enter the estuary during high runoff periods; while iron is enriched on particle surfaces in the summer. Concentrations of extractable iron and absorbance of EOM vary strongly from year to year. Highest absorbances of EOM occurred in the first year following the drought in 1976-77, and in 1982 and 1983 when river discharge was unusually high. Extractable-iron concentrations were also highest in 1976-77, but were very low in 1982 and 1983.

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USGS1985

Seasonal cycles of zooplankton from San Francisco Bay

The two estuarine systems composing San Francisco Bay have distinct zooplankton communities and seasonal population dynamics. In the South Bay, a shallow lagoon-type estuary, the copepods Acartia spp. and Oithona davisae dominate. As in estuaries along the northeast coast of the U.S., there is a seasonal succession involving the replacement of a cold-season Acartia species ( A. clausi s.l. ) by a warm-season species ( A. californiensis ), presumably resulting from the differential production and hatching of dormant eggs. Oithona davisae is most abundant during the fall. Copepods of northern San Francisco Bay, a partially-mixed estuary of the Sacramento-San Joaquin Rivers, organize into discrete populations according to salinity distribution: Sinocalanus doerrii (a recently introduced species) at the riverine boundary, Eurytemora affinis in the oligohaline mixing zone, Acartia spp. in polyhaline waters (18–30\%), and neritic species (e.g., Paracalanus parvus ) at the seaward boundary. Sinocalanus doerrii and E. affinis are present year-round. Acartia clausi s.l. is present almost year-round in the northern reach, and A. californiensis occurs only briefly there in summer-fall. The difference in succession of Acartia species between the two regions of San Francisco Bay may reflect differences in the seasonal temperature cycle (the South Bay warms earlier), and the perennial transport of A. clausi s.l. into the northern reach from the seaward boundary by nontidal advection. Large numbers (>10 6 m −3 ) of net microzooplankton (>64 µm), in cluding the rotifer Synchaeta sp. and three species of tintinnid ciliates, occur in the South Bay and in the seaward northern reach where salinity exceeds about 5–10‰ Maximum densities of these microzooplankton are associated with high concentrations of chlorophyll. Meroplankton (of gastropods, bivalves, barnacles, and polychaetes) constitute a large fraction of zooplankton biomass in the South Bay during winter-spring and in the northern reach during summer-fall. Seasonal cycles of zooplankton abundance appear to be constant among years (1978–1981) and are similar in the deep (>10 m) channels and lateral shoals (<3 m). The seasonal zooplankton community dynamics are discussed in relation to: (1) river discharge which alters salinity distribution and residence time of plankton; (2) temperature which induces production and hatching of dormant copepod eggs; (3) coastal hydrography which brings neritic copepods of different zoogeographic affinities into the bay; and (4) seasonal cycles of phytoplankton.

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USGS1985

Subtidal sea level and current variations in the northern reach of San Francisco Bay

Analyses of sea level and current-meter data using digital filters and a variety of statistical methods show a variety of phenomena related to non-local coastal forcing and local tidal forcing in the northern reach of San Francisco Bay, a partially mixed estuary. Low-frequency variations in sea level are dominated by non-local variations in coastal sea level and also show a smaller influence from tidally induced fortnightly sea level variations. Low-frequency currents demonstrate a gravitational circulation which is modified by changes in tidal-current speed over the spring-neap tidal cycle. Transients in gravitational circulation induce internal oscillations with periods of two to four days.

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USGS1985

Harmonic analysis of tides and tidal currents in South San Francisco Bay, California

Water level observations from tide stations and current observations from current-meter moorings in South San Francisco Bay (South Bay), California have been harmonically analysed. At each tide station, 13 harmonic constituents have been computed by a least-squares regression without inference. Tides in South Bay are typically mixed; there is a phase lag of approximately 1 h and an amplification of 1·5 from north to south for a mean semi-diurnal tide. Because most of the current-meter records are between 14 and 29 days, only the five most important harmonics have been solved for east-west and north-south velocity components. The eccentricity of tidal-current ellipse is generally very small, which indicates that the tidal current in South Bay is strongly bidirectional. The analyses further show that the principal direction and the magnitude of tidal current are well correlated with the basin bathymetry. Patterns of Eulerian residual circulation deduced from the current-meter data show an anticlockwise gyre to the west and a clockwise gyre to the east of the main channel in the summer months due to the prevailing westerly wind. Opposite trends have been observed during winter when the wind was variable.

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USGS1985

Increased benthic grazing: An alternative explanation for low phytoplankton biomass in northern San Francisco Bay during the 1976-1977 drought

Among the consequences of extremely low river flow into northern San Francisco Bay during a two-year drought were (1) a gradual increase in salinity, (2) an unusual decline in chlorophyll a concentration, and (3) the upstream migration of estuarine benthic invertebrates to the normally brackish area of the bay. Total abundance in the benthos at a shallow monitoring site increased from a normal 2000 to greater than 20 000 individuals m −2 during the summer of 1977, presumably in response to the increased salinity. Estimated filtration rates derived from equations in the literature for one of the species, the suspended-feeding bivalve Mya arenaria ranged from 1 to 4 m 3 m −2 day −1 during 1977 depending on abundance and mean size on sampling dates. Because water depth at this site is less than 2 m, Mya could have filtered all of the particles (including diatoms) from the water column on the order of once per day. Several other immigrant species undoubtedly contributed to the removal of particles from the near-bottom water as well. Increased benthic grazing, therefore, could have accounted for the anomalously low phytoplankton biomass observed during the drought. These results suggest that during periods of prolonged low river flow and increased salinity benthic food webs could become more important than planktonic food webs in the upper part of the estuary.

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USGS1985

Development of a computerized wetlands mapping data base for use in section 404 jurisdictional determinatins in San Francisco Bay

Development and habitat alteration in the San Francisco Bay-Delta system have placed the remaining wetlands in jeopardy. The Bay-Delta wetlands will be mapped in a joint project of the U. S. Environmental Protection Agency (EPA) and the U. S. Fish and Wildlife Service (FWS). Maps at a 1:24,000 scale will be produced for the entire study area. High altitude color infrared photography from 1985 and historical photographs from 1976-77 and the mid-1950's for selected areas of the Bay-Delta will be used. A wetland change analysis of the Bay-Delta area will be used to define current habitat boundaries for planning a mitigation strategy to manage the system.

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USGS1984

Chemical determination of particulate nitrogen in San Francisco Bay. A comparison of two estimates

Particulate nitrogen was measured by both the ultra-violet light-catalyzed peroxide method and the high temperature combustion method. The difference between values obtained with the two methods (combustion minus UV) was found to be linearly correlated with the concentration of total suspended particulate matter (SPM) in the sample. The slope of this correlation was taken to be the concentration of refractory nitrogen associated with the suspended matter, which may be ammonium ions fixed in lattices of clay minerals or organic nitrogen compounds did not vary significantly with SPM, location, water depth or salinity. Refractory nitrogen concentration were possibly related to concentrations of chlorophyll a and to cruise date, but in neither case was the evidence conclusive. Based on the indirect evidence presented, the UV method appears to provide a good measure of biologically reactive nitrogen in this system.

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USGS1984

Response of northern San Francisco Bay to riverine inputs of dissolved inorganic carbon, silicon, nitrogen and phosphorus

Estuarine processes can be effective in modifying (filtering) distributions of dissolved inorganic forms of carbon (DIC), silicon (DIS), nitrogen (DIN), and phosphorus (DIP) in northern San Francisco Bay. During winter, high inflow from the Sacramento-San Joaquin river system supplied these nutrients to the estuary at rates that exceeded potential rates of estuarine supply and removal processes. During spring and summer, when inflow rates were lower, the estuary was an effective &ldquo;filter&rdquo; of the river inflow &ldquo;signal&rdquo; because rates of estuarine processes were high relative to river and other supply rates. At lower inflow rates, the river apparently influenced estuarine hydrodynamic features that controlled rates of phytoplankton nutrient removal. Largest biological removal effects were localized in San Pablo Bay during spring and Suisun Bay during summer, and they were generally more pronounced in shallow water areas of the bays. In San Pablo Bay, effects of biological removal appeared soon after river inflow decreased from high winter rates, but persisted for only a short time. During the following summer months, DIN and DIP distributions in San Pablo Bay indicated that estuarine sources contributed to higher concentrations of these nutrients.

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USGS1984

Denitrification in San Francisco Bay intertidal sediments

The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO 3 &minus; + NO 2 &minus; concentrations (&le;26 &mu;M) were below the apparent K m (50 &mu;M) for nitrate. During the rainy season, when ambient NO 3 &minus; + NO 2 &minus; concentrations were higher (37 to 89 &mu;M), an accurate estimate of the K m could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N 2 O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N 2 O in the presence of C 2 H 2 was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cell suspensions of a marine pseudomonad confirmed that this N 2 O loss was caused by incomplete blockage of N 2 O reductase by C 2 H 2 at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 &mu;mol of N 2 m &minus;2 h &minus;1 (for undisturbed sediments) to 17 to 280 &mu;mol of N 2 m &minus;2 h &minus;1 (for shaken sediment slurries).

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USGS1984

Temporal dynamics and ecological significance of salinity stratification in an estuary (south San-Francisco Bay, USA)

South San Francisco Bay (USA) has periodic variations in salinity stratification that co&iuml;ncide with neap-spring tidal variations during the winter "wet" season, but it remains well-mixed during summer and fall. The degree of salinity stratification, and timing of stratification events, can be predicted from a simple empirical function of river discharge and tidal current speed. During periods of prolonged salinity stratification, phytoplankton biomass and primary productivity are high, phytoplankton patchiness increases, turbidity and nutrient (N) concentrations decline in the surface layer, and residual currents accelerate.

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USGS1984

Significance of biomass and light availability to phytoplankton productivity in San Francisco Bay

Primary productivity was measured monthly at 6 sites within San Francisco Bay, USA, throughout 1980. The 6 sites were chosen to represent a range of estuarine environments with respect to salinity, phytoplankton community composition, turbidity, and water depth. Annual net production over the photic zone ranged from 95 to 150 g C m-2, and was highest in regions of lowest turbidity. Daily photic zone net productivity PN,, ranged from 0.05 to 2.2 g C m-2 d-', and was significantly correlated with the composite parameter B I,/& (where B = phytoplankton biomass; I, = daily surface insolation; E = attenuation coefficient). Lnear regression of PN,, against B Io/€ indicated that most (82 %) of the spatio-temporal variability in primary productivity within this estuary is explained by variations in light availability and phytoplankton biomass. We also calculated annual water-column net productivity PN, as a fraction of annual gross productivity PGx The ratio PN,, : PG, was inversely related to the ratio of water depth H to annual mean photic depth Z,. This linear relation indicates that the watercolumn of San Francisco Bay is a net photosynthetic source of organic carbon only when the ratio H : Z, < 6. In deep turbid habitats, where H : Tp > 6, respiratory loss exceeds productivity. Thus, 2 empirical formulations allow us to estimate productivity over the photic zone and water column from simple properties that are easily measured.

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USGS1983

Variable tolerance to copper in two species from San Francisco Bay

In static toxicity experiments, tolerance to soluble Cu of the bivalve, Macoma balthica, and the copepod, Acartia clausi, varied substantially among populations sampled within San Francisco Bay. Intraspecific tolerance differed ten-fold or more for both species over relatively small distances, suggesting geographical isolation of populations is not a prerequisite for the development of intraspecific differences in tolerance by aquatic organisms.In static toxicity experiments, tolerance to soluble Cu of the bivalve, Macoma balthica, and the copepod, Acartia clausi, varied substantially among populations sampled within San Francisco Bay. Intraspecific tolerance differed ten-fold or more for both species over relatively small distances, suggesting geographical isolation of populations is not a prerequisite for the development of intraspecific differences in tolerance by aquatic organisms.

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USGS1983

Chemistry and microbiology of a sewage spill in South San Francisco Bay

During three weeks of September 1979, the breakdown of a waste treatment plant resulted in the discharge of a large volume (1.5×10 7 m 3 ) of primary-treated sewage into a tributary of South San Francisco Bay, California. Chemical and microbial changes occurred within the tributary as decomposition and nitrification depleted dissolved oxygen. Associated with anoxia were relatively high concentrations of particulate organic carbon, dissolved CO 2 , CH 4 , C 2 H 4 , NH + 4 , and fecal bacteria, and low phytoplankton biomass and photosynthetic oxygen production. South San Francisco Bay experienced only small changes in water quality, presumably because of its large volume and the assimilation of wastes that occurred within the tributary. Water quality improved rapidly in the tributary once normal tertiary treatment resumed.

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USGS1983

Observations from remote weather stations in San Francisco Bay, California

Weather data collected at three remote weather stations in the San Francisco Bay estuarine system between November 1979 and September 1981 are compiled in this report. Measurements include average and maximum wind speed, wind direction, air temperature, atmospheric pressure, and irradiance. Data are presented in time-series plots with each graph covering one calendar month. Daily averages of all measurements are tabulated.

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