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Research about San Francisco Bay

Source-linked reports with geographic coverage including San Francisco Bay.

At least 289 records · Page 16Linked to original sources
USGS1995

Hillside materials and slopes of the San Francisco Bay region, California

This report describes the various bedrock and soil materials and slope gradients that constitute hillsides in the San Francisco Bay region. Distribution of materials and slopes is shown on 1:125,000-scale maps of the region. Approximately 360 materials units are described by bedrock composition, physical properties of bedrock (rock hardness, spacing of fractures and partings, and bed thickness), texture of the soil cover, expansivity, permeability, and stratigraphic thickness. Materials map units are based on compilations of geologic mapping of the region; descriptions are based on systematic field observations, free-swell tests for expansivity, examination of aerial photographs, and the literature.

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USGS1995

Use of the euryhaline bivalve Potamocorbula amurensis as a biosentinel species to assess trace metal contamination in San Francisco Bay

Potamocorbula amurensis was assessed as a biosentinel species in San Francisco Bay, California, USA. Uptake of metal in both the laboratory and field showed that P. amurensis was sufficiently responsive to Ag, Cd, Cr, Ni and V to detect environmental differences in exposure. It was less suitable as an indicator of Cu and Zn contamination. Concentration factors for P. amurensis were: Ag, 386000; Cd, 50200; Cr, 36600; Cu, 12200; Ni, 5200; and Zn, 115500. Samples were collected from 6 stations throughout the bay at near-monthly intervals from January 1991 to March 1992. Variability within a collection was influenced by gut content and animal size. Other sources of variability were time [coefficient of variation (CV) = 10 to 21%], small-scale spatial variability (within 3 km, CV = 10 to 25%), and large-scale spatial variability (CV = 3.3 to 12.4%). Depuration for 48 h was necessary to mitigate bias from gut content. Precision was improved by analyzing large numbers of individuals (60 to 120) separated into several (5 to 14) composites at each collection and by determining, from regression, the mean and variance for samples with significant correlations between metal concentration and shell length. Repeated monthly sampling increased the accuracy of long-term site characterizations. Temporal variability was small because of drought. The grand means of the concentrations of Ag, Cd, Cr, Ni, and V in the tissues of P. amurensis at each station for the 15 mo period revealed persistent contamination from industrialized Suisun Bay to the mouth of San Francisco Bay. Demonstration of responsiveness, precision and accuracy should be a prerequisite for the optimal use of biosentinels.

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USGS1995

Pathway models could aid management of contaminants

Heavy metal and trace organic contaminants are often cited as factors that could affect the riclmess of the biological community of San Francisco Bay as well as the health of resident organisms. Silver (Ag), selenium (Se), mercury (Hg), copper (Cu), nickel (Ni), chromium (Cr), and cadmium (Cd) are among the trace elements of current regulatory interest. All these elements can be toxic to estuarine organisms in minute quantities. However, understanding their toxicity in nature has proven a difficult challenge. In general, it is difficult to prove how pollutants are affecting ecosystems. The undisturbed "baseline" condition in San Francisco Bay is not always well enough understood to identify whether certain processes are affected or unaffected by contamination. Sources of disturbance (flow diversions, drought, invasion of exotic species, etc.) occur in addition to chemical contamination. Responses to contamination in individual organisms, populations, and commumties are seldom pollutant-specific, and the complex responses to moderate levels of contamination are not well known.

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USGS1994

Ionic strength and DOC determinations from various freshwater sources to the San Francisco Bay

An exact estimation of dissolved organic carbon (DOC) within the salinity gradient of zinc and copper metals is significant in understanding the limit to which DOC could influence metal speciation. A low-temperature persulfate/oxygen/ultraviolet wet oxidation procedure was utilized for analyzing DOC samples adapted for ionic strength from major freshwater sources of the northern and southern regions of San Francisco Bay. The ionic strength of samples was modified with a chemically defined seawater medium up to 0.7M. Based on the results, a minimum effect of ionic strength on oxidation proficiency for DOC sources to the Bay over an ionic strength gradient of 0.0 to 0.7 M was observed. There was no major impacts of ionic strength on two Suwanee River fulvic acids. In general, the noted effects associated with ionic strength were smaller than the variances seen in the aquatic environment between high- and low-temperature methods.

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USGS1994

Genetic population structure of the recently introduced Asian clam, Potamocorbula amurensis , in San Francisco Bay

The genetic population structure of the recently introduced Asian clam, Potamocorbula amurensis , in San Francisco Bay was described using starch gel electrophoresis at eight presumptive loci. Specimens were taken from five environmentally distinct sites located throughout the bay. The population maintains a high degree of genetic variation, with a mean heterozygosity of 0.295, a mean polymorphism of 0.75, and an average of 3.70 alleles per locus. The population is genetically homogeneous, as evidenced from genetic distance values and F -statistics. However, heterogeneity of populations was indicated from a contingency chi-square test. Significant deviations from Hardy-Weinberg equilibrium and heterozygote deficiencies were found at the Lap-1 locus for all populations and at the Lap-2 locus for a single population. High levels of variability could represent a universal characteristic of invading species, the levels of variability in the source population(s), and/or the dynamics of the introduction. Lack of differentiation between subpopulations may be due to the immaturity of the San Francisco Bay population, the “general purpose” phenotype genetic strategy of the species, high rates of gene flow in the population, and/or the selective neutrality of the loci investigated.

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USGS1994

Notes on a Mesodinium rubrum red tide in San Francisco Bay (California, USA)

Discrete red patches of water were observed in South San Francisco Bay (USA) on 30 April 1993, and examination of live samples showed that this red tide was caused by surface accumulations of the pigmented ciliate Mesodinium rubrum . Vertical profiles showed strong salinity and temperature stratification in the upper 5 m, peak chlorophyll fluorescence in the upper meter, and differences in the small-scale density structure and fluorescence distribution among red patches. Events preceding this Mesodinium red tide included: (i) heavy precipitation and run-off, allowing for strong salinity stratification; (ii) a spring diatom bloom where the chlorophyll a concentration reached 50 mg m −3 ; (ii) depletions of dissolved inorganic N and Si in the photic zone; and (iv) several days of rapid warming and stabilization of the upper surface layer. These conditions may be general prerequisites for M.rubrum blooms in temperate estuaries.

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USGS1994

Seismic evidence for a lower-crustal detachment beneath San Francisco Bay, California

Results from the San Francisco Bay area seismic imaging experiment (BASIX) reveal the presence of a prominent lower crustal reflector at a depth of ∼15 kilometers beneath San Francisco and San Pablo bays. Velocity analyses indicate that this reflector marks the base of Franciscan assemblage rocks and the top of a mafic lower crust. Because this compositional contrast would imply a strong rheological contrast, this interface may correspond to a lower crustal detachment surface. If so, it may represent a subhorizontal segment of the North America and Pacific plate boundary proposed by earlier thermo-mechanical and geological models.

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USGS1994

Dissolved nutrient and suspended particulate matter data for the San Francisco Bay estuary, California, October 1991 through November 1993

The U.S. Geological Survey conducted hydrologic investigations in San Francisco Bay between October 1991 and November 1993. Dissolved inorganic plant nutrients, nitrate, nitrite, ammonium, silica, and reactive phosphorus were measured in surface and in near-bottom waters at previously established locations in both northern and southern reaches of the bay. Salinity, turbidigy, and concentrations of suspended particulate matter also were measured. Additionally, concentratons of dissolved organic nitrogen and phosphorus were occasionally measured. This report presents the sampling and analytical methods, and the data for these studies. Data on the variability due to sampling and sample handling procedures, on the precision of the analytical methods, and on recoveries of known additions from samples are also presented.

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USGS1994

Studies of the San Francisco Bay, California, estuarine ecosystem: Pilot regional monitoring program results, 1993

Water samples were collected in the San Francisco Bay estuary during 22 cruises from January through December 1993. Conductivity, temperature, light attenuation, turbidity, oxygen, and in-vivo fluorescence were measured 1ongitudinally and vertically in the main channel of the estuary from south of the Dumbarton Bridge in the southern part of the bay to Rio Vista on the Sacramento River. Discrete water samples were analyzed for chlorophyll a, phaeopigments, suspended particulate matter, and dissolved oxygen. Water density was calculated from values for salinity, temperature, and pressure (depth), and is included in the data summaries. Photosynthetic parameters, water column respiration, and phytoplankton species abundance and cell volume were determined at selected stations every other month.

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USGS1994

Central San Francisco Bay suspended-sediment transport processes study and comparison of continuous and discrete measurements of suspended-solids concentrations

Sediments are an important component of the San Francisco Bay estuarine system. Potentially toxic substances, such as metals and pesticides, adsorb to sediment particles. The sediments on the bottom of the Bay provide the habitat for benthic communities which can ingest these substances and introduce them into the food web. The bottom sediments are also a reservoir of nutrients. The transport and fate of suspended sediment is an important factor in determining the transport and fate of the constituents adsorbed on the sediment. Suspended sediments also limit light availability in the bay, which limits photosynthesis and primary production, and deposit in ports and shipping channels, which require dredging. Dredged materials are disposed in Central San Francisco Bay.

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USGS1994

A survey of molecular marker compounds in sediments of San Francisco Bay, California

An areal survey of surficial sediments in San Francisco Bay has been conducted to evaluate the presence of extractable organic compounds. Molecular marker compounds studied include hydrocarbons (PAH's), chlorinated pesticides, and other organic compounds that provide information on sources of organic input into the Bay. Fairly uniform source profiles are seen throughout the Bay. Biomarker profiles contain mature constituents indicating anthropogenic influences and extensive sediment reworking. The dominant input signatures in San Francisco Bay sediment are those of anthropogenic PAH's from combustion and other sources, and long chain n-alkanes and n-aldehydes from terrigenous vascular plants. A comparison of the sums of the combustion PAH's and the terrigenous n-alkanes shows that an anthropogenic influence is dominant in the most urban parts of the Bay close to shore, and in mid-Bay channel areas, and a terrigenous signature is dominant nearshore in San Pablo Bay and at the southernmost station in South Bay.

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USGS1994

San Francisco Bay/delta regional monitoring program plankton and water quality pilot study, 1993, in 1993 Annual Report, San Francisco Estuary Regional Monitoring Program for Trace Substances: San Francisco Estuary Institute

The pilot program described here is motivated by a fundamental principle of the Regional Monitoring Strategy, namely “...the development of data that will provide information on status and trends in the Estuary.” As pointed out in the Strategy, knowledge of status and trends serves two primary purposes: (1) to become aware of or anticipate deleterious conditions in the Estuary, and (2) to assess the effectiveness of management actions. This program addresses these two purposes by focusing on aquatic resources, one of the five key management issues identified by the Comprehensive Conservation and Management Plan and central to the Regional Monitoring Strategy. It also bears on at least two of the other management issues - pollutants and water use. A regional monitoring program must cover many types of resources, including pelagic and benthic channel habitat, shoal habitat, wetlands, river channels, sloughs, and small bays and harbors. This particular program centers on the pelagic channel habitat. However, because of the intimate connection between channel habitat and many or most of these other habitats, channel measurements reflect to some extent the status of and trends in other resource types as well. A primary aim of this program is to provide a high-resolution description of critical aspects of habitat quality, which can be used along with other information (1) to determine the suitability of habitat for aquatic resources; (2) to monitor responsiveness of the habitat to freshwater flow variability; and (3) to provide a context for understanding pollutant distributions. In a single transect, measurements are made throughout the water column at up to 37 stations to define physical (salinity, temperature, suspended particulate matter, and light penetration), chemical (dissolved oxygen) and biological (chlorophyll a ) characteristics that influence both chemical and biological reactions. A second aim of the program is to investigate planktonic indicators of ecosystem structure and function. Phytoplankton production is the major single source of energy for the San Francisco Bay food web. Our measurements of chlorophyll and light penetration can be used to provide an estimate of this production, and therefore the availability of food for organisms at higher trophic levels. Phytoplankton community composition at the species level, which can be a sensitive indicator of habitat change, is also a standard component of this program. Community composition data enable detection of species known to be responsible for harmful or nuisance algal blooms. In 1993, two other indicators were also evaluated, photosynthetic parameters and water column respiration . Photosynthetic parameters partially characterize the physiological state of the phytoplankton and may provide indirect evidence of nutrient deficiency or the effects of pollutants. Water column respiration serves as a simple integrated measure of organic matter metabolism by the plankton, including bacteria, phytoplankton, and microzooplankton. It therefore reflects the total supply of organic matter, whether from photosynthesis, tidal marsh efflux, point sources, or upstream in the Delta. These biological indicators therefore contain much information about the flow of energy into the food web.

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USGS1993

Tidal, Residual, Intertidal Mudflat (TRIM) Model and its Applications to San Francisco Bay, California

A numerical model using a semi-implicit finite-difference method for solving the two-dimensional shallow-water equations is presented. The gradient of the water surface elevation in the momentum equations and the velocity divergence in the continuity equation are finite-differenced implicitly, the remaining terms are finite-differenced explicitly. The convective terms are treated using an Eulerian-Lagrangian method. The combination of the semi-implicit finite-difference solution for the gravity wave propagation, and the Eulerian-Lagrangian treatment of the convective terms renders the numerical model unconditionally stable. When the baroclinic forcing is included, a salt transport equation is coupled to the momentum equations, and the numerical method is subject to a weak stability condition. The method of solution and the properties of the numerical model are given. This numerical model is particularly suitable for applications to coastal plain estuaries and tidal embayments in which tidal currents are dominant, and tidally generated residual currents are important. The model is applied to San Francisco Bay, California where extensive historical tides and current-meter data are available. The model calibration is considered by comparing time-series of the field data and of the model results. Alternatively, and perhaps more meaningfully, the model is calibrated by comparing the harmonic constants of tides and tidal currents derived from field data with those derived from the model. The model is further verified by comparing the model results with an independent data set representing the wet season. The strengths and the weaknesses of the model are assessed based on the results of model calibration and verification. Using the model results, the properties of tides and tidal currents in San Francisco Bay are characterized and discussed. Furthermore, using the numerical model, estimates of San Francisco Bay's volume, surface area, mean water depth, tidal prisms, and tidal excursions at spring and neap tides are computed. Additional applications of the model reveal, qualitatively the spatial distribution of residual variables.

Califoronia↗
USGS1993

Distributions of pesticides and organic contaminants between water and suspended sediment, San Francisco Bay, California

Suspended-sediment and water samples were collected from San Francisco Bay in 1991 during low river discharge and after spring rains. All samples were analyzed for organophosphate, carbamate, and organochlorine pesticides; petroleum hydrocarbons; biomarkers; and polynuclear aromatic hydrocarbons. The objectives were to determine the concentrations of these contaminants in water and suspended sediment during two different hydrologic conditions and to determine partition coefficients of the contaminants between water and sediment. Concentrations of hydrophobic contaminants, such as polynuclear aromatic hydrocarbons, varied with location of sample collection, riverine discharge, and tidal cycle. Concentrations of hydrophobic contaminants in suspended sediments were highest during low river discharge but became diluted as agricultural soils entered the bay after spring rains. Polynuclear aromatic hydrocarbons defined as dissolved in the water column were not detected. The concentrations sorbed on suspended sediments were variable and were dependent on sediment transport patterns in the bay. In contrast, the relatively hydrophilic organophosphate pesticides, such as chlorpyrifos and diazinon, has a more uniform concentration in suspended sediment. These pesticides were detected only after spring rains. Most of the measured diazinon, at least 98% for all samples, was in the dissolved phase. Measured partition coefficients for diazinon generally were uniform, which suggests that suspended-sediment concentrations were close to equilibrium with dissolved concentrations. The concentration of diazinon sorbed to suspended sediments, at any given sampling site, was driven primarily by the more abundant solution concentration. The concentrations of diazinon sorbed to suspended sediments, therefore, were independent of the patterns of sediment movement.

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USGS1993

Dissolved nutrient and suspended particulate matter data for the San Francisco Bay estuary, California, October 1988 through September 1991

The U.S. Geological Survey conducted hydrologic investigations in San Francisco Bay during Water Years 1988, 1989, 1990 and 1991. Dissolved inorganic plant nutrients, nitrate, nitrite, ammonium, silica, and reactive phosphorus were measured in surface and in near-bottom waters at previously established locations in both northern and southern reaches of the bay. Salinity, turbidity, and concentrations of suspended particulate matter also were measured. Additionally, in Water Year 1991, concentrations of dissolved organic nitrogen and phosphorus were measured. From November 1990 through April 1991, surface waters were sampled near the end of the old Dumbarton Bridge (east span). Salinity, dissolved inorganic nutrients, and alkalinity were measured for these samples. This report presents the sampling and analytical methods, and the data for these studies.

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