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Research about San Francisco Bay

Source-linked reports with geographic coverage including San Francisco Bay.

At least 271 records · Page 15Linked to original sources
USGS1996

Toxic phytoplankton in San Francisco Bay

The Regional Monitoring Program (RMP) was conceived and designed to document the changing distribution and effects of trace substances in San Francisco Bay, with focus on toxic contaminants that have become enriched by human inputs. However, coastal ecosystems like San Francisco Bay also have potential sources of naturally-produced toxic substances that can disrupt food webs and, under extreme circumstances, become threats to public health. The most prevalent source of natural toxins is from blooms of algal species that can synthesize metabolites that are toxic to invertebrates or vertebrates. Although San Francisco Bay is nutrient-rich, it has so far apparently been immune from the epidemic of harmful algal blooms in the world’s nutrient-enriched coastal waters. This absence of acute harmful blooms does not imply that San Francisco Bay has unique features that preclude toxic blooms. No sampling program has been implemented to document the occurrence of toxin-producing algae in San Francisco Bay, so it is difficult to judge the likelihood of such events in the future. This issue is directly relevant to the goals of RMP because harmful species of phytoplankton have the potential to disrupt ecosystem processes that support animal populations, cause severe illness or death in humans, and confound the outcomes of toxicity bioassays such as those included in the RMP. Our purpose here is to utilize existing data on the phytoplankton community of San Francisco Bay to provide a provisional statement about the occurrence, distribution, and potential threats of harmful algae in this Estuary.

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USGS1996

Central San Francisco Bay suspended-sediment transport processes and comparison of continuous and discrete measurements of suspended-solids concentrations

Sediments are an important component of the San Francisco Bay estuarine system. Potentially toxic substances, such as metals and pesticides, adsorb to sediment particles (Kuwabara and others, 1989; Domagalski and Kuivila, 1993). Sediments on the bottom of the bay provide the habitat for benthic communities that can ingest these substances and introduce them into the food web (Luoma and others, 1985). Nutrients, metals, and other substances are stored in bottom sediments and pore water in which chemical reactions occur and which provide an important source and/or sink to the water column (Hammond and others, 1985; Flegal and others, 1991). The transport and fate of suspended sediment is an important factor in determining the transport and fate of the constituents adsorbed on the sediment. Seasonal changes in sediment erosion and deposition patterns contribute to seasonal changes in the abundance of benthic macroinvertebrates (Nichols and Thompson, 1985). Tidal marshes are an ecologically important habitat that were created and are maintained by sedimentation processes (Atwater and others, 1979). In Suisun Bay, the maximum suspended-sediment concentration marks the position of the turbidity maximum, which is a crucial ecological region in which suspended sediment, nutrients, phytoplankton, zooplankton, larvae, and juvenile fish accumulate (Peterson and others, 1975; Arthur and Ball, 1979; Kimmerer, 1992; Jassby and Powell, 1994). Suspended sediments confine the photic zone to the upper part of the water column, and this limitation on light availability is a major control on phytoplankton production in San Francisco Bay (Cloern, 1987; Cole and Cloern, 1987). Suspended sediments also deposit in ports and shipping channels, which must be dredged to maintain navigation (U.S. Environmental Protection Agency, 1992).

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USGS1996

Choosing optimum station configurations for summarizing water quality characteristics, in 1994 Annual Report, San Francisco Estuary Regional Monitoring Program for Trace Substances: San Francisco Estuary Institute

One of the central problems in regional monitoring is choosing a station array that accurately reflects the distribution of values for the entire region of interest. For time-consuming or expensive measurements, an additional goal is to make the number of sampling locations and times as small as possible. These problems are probably most difficult in estuaries because of the relatively large variability on many different spatial and temporal scales. This high variability often means that comprehensive historical data are not available for accurately assessing sparser sampling efforts. It also implies that a higher frequency of sampling in space and time is required compared to other water bodies. In this report, we focus on selection of an “optimum” station configuration for the channel of San Francisco Bay for vertical profiling of water quality. Our analysis is based on the monthly cruises conducted by the USGS under the auspices of the Regional Monitoring Program for Trace Substances (Caffrey et al. 1994; SFEI 1994). The underlying rationale for undertaking the analysis is that the distribution of trace substances is structured, at least in part, by the same forces acting on water quality parameters. This must be true to some extent, as trace substance concentrations are partially dependent on water quality characteristics such as salinity. On the other hand, the quantitative importance of these parameters in accounting for overall variability in individual trace substances is unknown. Furthermore, trace substances have their own unique sources, and these sources may dominate their distribution.

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USGS1996

Origins and philosophy of building a temporal database to examine human transformation processes

The U.S. Geological Survey (USGS), in partnership with the University of Maryland Baltimore County, is using historical maps and satellite images to map human-induced land transformations for the Baltimore-Washington metropolitan area. This work builds on an earlier effort that documented the historical urban development for the San Francisco Bay area. That effort used a geographic information system to compile a database that provided a visual and historical perspective of the urban growth experienced in the Bay area between 1850 and 1990. Historical overviews of urban development can be used to provide insights into the future. The Bay area work was inspired by the desire to draw upon the USGS's rich 100-year topographic map, and 20-year Landsat satellite data archives. A methodology was developed to combine the information from a variety of sources into an integrated, multi-scale, and multi-resolution dataset. Temporal urban mapping is used to examine past landscapes by incorporating historic maps, census statistics, and commerce records to generate a progressive geo-referenced representation of the past changes in the region. Contemporary analysis focuses on the use of remotely sensed data, existing digital land use data, digital census information, and a variety of Earth science infrastructure data, such as Digital Line Graphs, Digital Elevation Models, and key ancillary demographic information. The resulting database of temporal urban demographic changes provides an ideal source of test data and information for both urban geographers and global change research scientists.

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USGS1995

A computer model of long-term salinity in San Francisco Bay: Sensitivity to mixing and inflows

A two-level model of the residual circulation and tidally-averaged salinity in San Francisco Bay has been developed in order to interpret long-term (days to decades) salinity variability in the Bay. Applications of the model to biogeochemical studies are also envisaged. The model has been used to simulate daily-averaged salinity in the upper and lower levels of a 51-segment discretization of the Bay over the 22-y period 1967–1988. Observed, monthly-averaged surface salinity data and monthly averages of the daily-simulated salinity are in reasonable agreement, both near the Golden Gate and in the upper reaches, close to the delta. Agreement is less satisfactory in the central reaches of North Bay, in the vicinity of Carquinez Strait. Comparison of daily-averaged data at Station 5 (Pittsburg, in the upper North Bay) with modeled data indicates close agreement with a correlation coefficient of 0.97 for the 4110 daily values. The model successfully simulates the marked seasonal variability in salinity as well as the effects of rapidly changing freshwater inflows. Salinity variability is driven primarily by freshwater inflow. The sensitivity of the modeled salinity to variations in the longitudinal mixing coefficients is investigated. The modeled salinity is relatively insensitive to the calibration factor for vertical mixing and relatively sensitive to the calibration factor for longitudinal mixing. The optimum value of the longitudinal calibration factor is 1.1, compared with the physically-based value of 1.0. Linear time-series analysis indicates that the observed and dynamically-modeled salinity-inflow responses are in good agreement in the lower reaches of the Bay.

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USGS1995

Seasonal/yearly salinity variations in San Francisco Bay

The ability of resource agencies to manage fish, wildlife and freshwater supplies of San Francisco Bay estuary requires an integrated knowledge of the relations between the biota and their physical environment. A key factor in these relations is the role of salinity in determining both the physical and the biological character of the estuary. The saltiness of the water, and particularly its seasonal and interannual patterns of variability, affects which aquatic species live where within the estuary. Salinity also determines where water can and cannot be diverted for human consumption and irrigated agriculture, and plays a role in determining the capacity of the estuary to cleanse itself of wastes. In short, salinity is a fundamental property of estuarine physics and chemistry that, in turn, determines the biological characteristics of each estuary. Freshwater is a major control on estuarine salinity. Most freshwater supplied to the Bay is from river flow through the Delta, which is primarily runoff from the Sierra Nevada. Most contaminants in San Francisco Bay are from the Sacramento/San Joaquin Valley and the local watershed around the Bay rather than the sea or atmosphere. Land is the primary source of freshwater and freshwater serves as a tracer of land-derived substances such as the trace metals (copper, lead and selenium), pesticides and plant nutrients (nitrate and phosphate). The U.S. Geological Survey is collaborating with other agencies and institutions in studying San Francisco Bay salinity using field observations and numerical simulations to define the physical processes that control salinity. The issues that arise from salinity fluctuations, however, differ in the northern and southern parts of the bay. In North Bay we need to know how salinity responds to freshwater flow through the Sacramento/San Joaquin Delta; this knowledge will benefit water managers who determine how much delta flow is needed a) to protect freshwater supplies for municipal water use and b) modulate salinity for a healthy estuary. In South Bay we need to know where the freshwater comes from (the distant Delta or local streams) to sort out the sources of a) contamination or b) dilution.

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USGS1995

Benthic macrofauna data for San Francisco Bay, California, September 1986

Benthic macrofauna were collected during September 1986 to evaluate locations for long-term monitoring stations as part of the U.S. Geological Survey Regional Effects Monitoring Program in San Francisco Bay, California. Three to ten replicate samples were collected with a modified Van Veen sampler (0.05 m 2 area) at ten locations. One box core sample (0.06 m 2 area) was collected at seven to the ten locations. Six of the box core samples were split into an upper 10 cm sample and a deeper sample before analysis. Macrofauna specimens were identified to the lowest possible taxon, usually genus and species, then counted. An average of 88 percent of the benthic macrofauna specimens were identified to the species level. The fraction identified varied among stations from 54 to 98 percent. Nematodes and oligochaetes accounted for most of the unidentified specimens. Relative to the total number of species identified in five replicates at each location, an average of 90 percent of the species were collected with three replicates. In general, species with high to moderate abundances were present in all replicates, and species collected only after three or more replicates averaged less than one specimen per replicate. Results from the box cores showed that the dominant species were most abundant in the upper 10 cm, the depth of sediment that can be adequately sampled with a modified Van Veen sampler. On the basis of the number of species and their abundances at each location, seven of the ten locations were selected for sampling in the regular program, which began in March 1987.

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USGS1995

Measurements of salinity, temperature, and tides in south San Francisco Bay, California, at Dumbarton Bridge: 1990-93 water years

The U.S. Geological Survey measures salinity, temperature, and water levels (tides) in southern San Francisco Bay at Dumbarton Bridge as part of a cooperative program with the California State Department of Water Resources. During water years 1990-93, measurements were made at 15-minute intervals with electonic sensors located approximately one meter above the substrate in approximately six meters of water (at mean water level). During March and April of 1991 and 1992, salinity and temperature also were measured with a self-contained system floating one meter below the surface of the water. Sections of the data set were selected to illustrate influences of tidal currents, weather events, and seasonal and interannual variations in climate on salinity, temperature, and water levels at this location. The edited data are provided on high-density disks in comma-delimited, ASCII text files.

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USGS1995

Supporting data for hydrologic studies in San Francisco Bay, California: Meteorological measurements at the Port of Redwood City during 1992-1994

Meteorological data were collected during 1992-94 at the Port of Redwood City, California, to support hydrologic studies in southern San Francisco Bay. The meteorological variables that were measured were air temperature, atmospheric pressure, quantum flux (insolation), and four parameters of wind speed and direction: scalar mean horizontal wind speed, (vector) resultant horizontal wind speed, resultant wind direction, and standard deviation of the wind direction. Hourly mean values based on measurements at five-minute intervals were logged at the site, then transferred to a portable computer monthly. Daily mean values were computed for temperature, insolation, pressure, and scalar wind speed. Hourly- mean and daily-mean values are presented in time- series plots and daily variability and seasonal and annual cycles are described. All data are provided in ASCII files on an IBM-formatted disk. Observations of temperature and wind speed at the Port of Redwood City were compared with measurements made at the San Francisco International Airport. Most daily mean values for temperature agreed within one- to two-tenths of a degree Celsius between the two locations. Daily mean wind speeds at the Port of Redwood City were typically half the values at the San Francisco International Airport. During summers, the differences resulted from stronger wind speeds at the San Francisco International Airport occurring over longer periods of each day. A comparison of hourly wind speeds at the Palo Alto Municipal Airport with those at the Port of Redwood City showed that values were similar in magnitude.

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