USGS ScienceSearch

Geology topics

Research about Queensland

Source-linked reports with geographic coverage including Queensland.

11 recordsLinked to original sources

A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong

Non-invasively collected faecal samples are an alternative source of DNA to tissue samples, that may be used in genetic studies of wildlife when direct sampling of animals is difficult. Although several faecal DNA extraction methods exist, their efficacy varies between species. Previous attempts to amplify mitochondrial DNA (mtDNA) markers from faeces of wild dugongs ( Dugong dugon ) have met with limited success and nuclear markers (microsatellites) have been unsuccessful. This study aimed to establish a tool for sampling both mtDNA and nuclear DNA (nDNA) from dugong faeces by modifying approaches used in studies of other large herbivores. First, a streamlined, cost-effective DNA extraction method that enabled the amplification of both mitochondrial and nuclear markers from large quantities of dugong faeces was developed. Faecal DNA extracted using a new ‘High Volume- Cetyltrimethyl Ammonium Bromide- Phenol-Chloroform-Isoamyl Alcohol’ (HV-CTAB-PCI) method was found to achieve comparable amplification results to extraction of DNA from dugong skin. As most prevailing practices advocate sampling from the outer surface of a stool to maximise capture of sloughed intestinal cells, this study compared amplification success of mtDNA between the outer and inner layers of faeces, but no difference in amplification was found. Assessment of the impacts of faecal age or degradation on extraction, however, demonstrated that fresher faeces with shorter duration of environmental (seawater) exposure amplified both markers better than eroded scats. Using the HV-CTAB-PCI method, nuclear markers were successfully amplified for the first time from dugong faeces. The successful amplification of single nucleotide polymorphism (SNP) markers represents a proof-of-concept showing that DNA from dugong faeces can potentially be utilised in population genetic studies. This novel DNA extraction protocol offers a new tool that will facilitate genetic studies of dugongs and other large and cryptic marine herbivores in remote locations.

Queensland

To what extent is drought-induced tree mortality a natural phenomenon?

Aim Catastrophic forest mortality due to more extreme rainfall deficits and higher temperatures under future climate scenarios has been predicted. The aim of this study is to explore the magnitude of historical drought-induced tree mortality under pre-warming conditions. Location North-eastern Australia. Time period 1845–2017. Major taxa studied Trees. Methods Field survey, historical analysis and climate analysis. Results We present evidence of 18%–30% tree mortality from recent droughts across three regions of north-eastern Australia with rainfall deficits less severe than earlier historical droughts. The corrected temperature record represents modest warming at the stations with long records in the vicinity of the study areas. In terms of rainfall deficit the most severe drought on record occurred in the early 20th century, and historical evidence confirms that this drought and earlier droughts before the advent of pastoralism coincided with substantial tree mortality. Main conclusions Dramatic declines in woody biomass in response to drought historically occurred more than once a century and are a natural phenomenon in semi-arid Australia. The magnitude of drought-induced tree mortality under natural climate fluctuations requires further investigation in other continents. Widespread drought-induced tree mortality is not just a recent global change phenomenon and has been underestimated as a natural ecological process. However, even more severe forest die-off events from more extreme hotter droughts are predicted if Earth’s warming proceeds as currently projected.

Queensland

Enhancement and integration of airborne gamma-ray spectrometric and Landsat imagery for regolith mapping — Cape York Peninsula

Airborne gamma-ray spectrometric data (400-m line spacing), gathered for the National Geoscience Mapping Accord North Queensland Project, has proved invaluable for differentiating regolith types based on their potassium, thorium and uranium signatures. The ability of the gamma-ray signal to penetrate the vegetation cover and as much as 40 cm below the surface was a considerable advantage in North Queensland, where traditional mapping techniques are hindered by the thick vegetation cover and where deeply weathered sandy soils frequently mask underlying geology. Two image-processing techniques were used to enhance the gamma-ray data and integrate them with Landsat Thematic Mapper (TM) data. Firstly, a sun-angle illuminated high-pass filtered component (hillshade) of the gamma-ray image was added to a three-band false-colour composite image of the corrected gamma-ray data. The hillshade component highlighted local changes in the gamma-ray signal which related to changes in regolith materials and lithology, and sharpened boundaries associated with geomorphic features. Secondly, the gamma-ray image was integrated (pixel by pixel) with the high-frequency component of the corresponding TM band 5 scene. This allowed the imagery to be interpreted in a geomorphological and structural context. Broad lithological divisions and structural domains were identified in the imagery, but most of the variation within these groups relates to the regolith cover and to geomorphic features in the landscape. Subtle variations in lithology were effectively interpreted only when the responses of the regolith cover are known. The gamma-ray imagery provided an insight into the weathering and geomorphic history of the region. In addition, the imagery can also be interpreted as a ‘geomorphic activity map’, separating stable landforms with deep weathering from younger landforms with active erosion and stripping of the surficial cover. This allows past and present geomorphic processes to be interpreted from the imagery, which in turn provides more informed extrapolation of field results and prediction of regolith types. The imagery was highly useful for basement and regolith mapping. There is considerable potential for assisting with interpretation of both stream-sediment geochemical data and environmental studies, since the resulting imagery effectively maps the distribution of sediments in the landscape, and identifies areas of erosion and land degradation.

Queensland

A new species of freshwater eel-tailed catfish of the genus Tandanus ( Teleostei: Plotosidae ) from the Wet Tropics Region of Eastern Australia

Tandanus tropicanus , new species, is described based on specimens from streams in the wet tropics region of northeast Queensland. Previously, two species were recognized in the genus Tandanus : T. tandanus of eastern Australia and T. bostocki of Western Australia. A combination of meristic and morphometric characters distinguishes the new species from all congeners. Further, taxonomic distinctness based on morphologic differences between the new species and all congeners is corroborated by genetic analyses.

Queensland

Probabilistic estimation of dune retreat on the Gold Coast, Australia

Sand dunes are an important natural buffer between storm impacts and development backing the beach on the Gold Coast of Queensland, Australia. The ability to forecast dune erosion at a prediction horizon of days to a week would allow efficient and timely response to dune erosion in this highly populated area. Towards this goal, we modified an existing probabilistic dune erosion model for use on the Gold Coast. The original model was trained using observations of dune response from Hurricane Ivan on Santa Rosa Island, Florida, USA (Plant and Stockdon 2012. Probabilistic prediction of barrier-island response to hurricanes, Journal of Geophysical Research, 117(F3), F03015). The model relates dune position change to pre-storm dune elevations, dune widths, and beach widths, along with storm surge and run-up using a Bayesian network. The Bayesian approach captures the uncertainty of inputs and predictions through the conditional probabilities between variables. Three versions of the barrier island response Bayesian network were tested for use on the Gold Coast. One network has the same structure as the original and was trained with the Santa Rosa Island data. The second network has a modified design and was trained using only pre- and post-storm data from 1988-2009 for the Gold Coast. The third version of the network has the same design as the second version of the network and was trained with the combined data from the Gold Coast and Santa Rosa Island. The two networks modified for use on the Gold Coast hindcast dune retreat with equal accuracy. Both networks explained 60% of the observed dune retreat variance, which is comparable to the skill observed by Plant and Stockdon (2012) in the initial Bayesian network application at Santa Rosa Island. The new networks improved predictions relative to application of the original network on the Gold Coast. Dune width was the most important morphologic variable in hindcasting dune retreat, while hydrodynamic variables, surge and run-up elevation, were also important

Queensland

Pulsing and circulation in rip current system

Current pulsations from a longshore bar and trough rip system located on the eastern coast of Moreton Island, Australia are presented. These pulsations occur over 10-20minute intervals through the rip system and are correlated to both water level gradients and wave energy variations. The field measurements suggest that rip current pulsations can be driven by fluctuating mass transport over the shore parallel inner bar.

Queensland

The role of surface and subsurface processes in keeping pace with sea level rise in intertidal wetlands of Moreton Bay, Queensland, Australia

Increases in the elevation of the soil surfaces of mangroves and salt marshes are key to the maintenance of these habitats with accelerating sea level rise. Understanding the processes that give rise to increases in soil surface elevation provides science for management of landscapes for sustainable coastal wetlands. Here, we tested whether the soil surface elevation of mangroves and salt marshes in Moreton Bay is keeping up with local rates of sea level rise (2.358 mm y -1 ) and whether accretion on the soil surface was the most important process for keeping up with sea level rise. We found variability in surface elevation gains, with sandy areas in the eastern bay having the highest surface elevation gains in both mangrove and salt marsh (5.9 and 1.9 mm y -1 ) whereas in the muddier western bay rates of surface elevation gain were lower (1.4 and -0.3 mm y -1 in mangrove and salt marsh, respectively). Both sides of the bay had similar rates of surface accretion (~7–9 mm y -1 in the mangrove and 1–3 mm y -1 in the salt marsh), but mangrove soils in the western bay were subsiding at a rate of approximately 8 mm y -1 , possibly due to compaction of organic sediments. Over the study surface elevation increments were sensitive to position in the intertidal zone (higher when lower in the intertidal) and also to variation in mean sea level (higher at high sea level). Although surface accretion was the most important process for keeping up with sea level rise in the eastern bay, subsidence largely negated gains made through surface accretion in the western bay indicating a high vulnerability to sea level rise in these forests.

Queensland

Physiological response of wild dugongs ( Dugong dugon ) to out-of-water sampling for health assessment

The dugong ( Dugong dugon ) is a vulnerable marine mammal with large populations living in urban Queensland waters. A mark-recapture program for wild dugongs has been ongoing in southern Queensland since 2001. This program has involved capture and in-water sampling of more than 700 dugongs where animals have been held at the water surface for 5 min to be gene-tagged, measured, and biopsied. In 2008, this program expanded to examine more comprehensively body condition, reproductive status, and the health of wild dugongs in Moreton Bay. Using Sea World's research vessel, captured dugongs were lifted onto a boat and sampled out-of-water to obtain accurate body weights and morphometrics, collect blood and urine samples for baseline health parameters and hormone profiles, and ultrasound females for pregnancy status. In all, 30 dugongs, including two pregnant females, were sampled over 10 d and restrained on deck for up to 55 min each while biological data were collected. Each of the dugongs had their basic temperature-heart rate-respiration (THR) monitored throughout their period of handling, following protocols developed for the West Indian manatee ( Trichechus manatus ). This paper reports on the physiological response of captured dugongs during this out-of-water operation as indicated by their vital signs and the suitability of the manatee monitoring protocols to this related sirenian species. A recommendation is made that the range of vital signs of these wild dugongs be used as benchmark criteria of normal parameters for other studies that intend to sample dugongs out-of-water.

Queensland

The occurrence of antibiotics in an urban watershed: From wastewater to drinking water

The presence of 28 antibiotics in three hospital effluents, five wastewater treatment plants (WWTPs), six rivers and a drinking water storage catchment were investigated within watersheds of South&ndash;East Queensland, Australia. All antibiotics were detected at least once, with the exception of the polypeptide bacitracin which was not detected at all. Antibiotics were found in hospital effluent ranging from 0.01&ndash;14.5 &mu;g L -1 , dominated by the &beta;-lactam, quinolone and sulphonamide groups. Antibiotics were found in WWTP influent up to 64 &mu;g L -1 , dominated by the &beta;-lactam, quinolone and sulphonamide groups. Investigated WWTPs were highly effective in removing antibiotics from the water phase, with an average removal rate of greater than 80% for all targeted antibiotics. However, antibiotics were still detected in WWTP effluents in the low ng L -1 range up to a maximum of 3.4 &mu;g L -1 , with the macrolide, quinolone and sulphonamide antibiotics most prevalent. Similarly, antibiotics were detected quite frequently in the low ng L -1 range, up to 2 &mu;g L -1 in the surface waters of six investigated rivers including freshwater, estuarine and marine samples. The total investigated antibiotic concentration (TIAC) within the Nerang River was significantly lower ( p < 0.05) than all other rivers sampled. The absence of WWTP discharge to this river is a likely explanation for the significantly lower TIAC and suggests that WWTP discharges are a dominant source of antibiotics to investigated surface waters. A significant difference ( p < 0.001) was identified between TIACs at surface water sites with WWTP discharge compared to sites with no WWTP discharge, providing further evidence that WWTPs are an important source of antibiotics to streams. Despite the presence of antibiotics in surface waters used for drinking water extraction, no targeted antibiotics were detected in any drinking water samples.

Queensland

Interpretation of a Landsat image of an unusual flood phenomenon in Australia

A Landsat image of part of the flooded area of Cooper Creek, Queensland, Australia, in February 1974, shows large dark areas within the flooded valley. The dark areas are believed to be wet, but unflooded, areas of dark alluvial soil. These striking features, which have not previously been identified on Landsat images, must be properly interpreted so as not to confuse them with clear water.

Queensland