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Geology topics

R.J. Cooper

Publications and source records attributed to R.J. Cooper.

At least 19 recordsLinked to original sources
USGS2021

Early successional riparian vegetation is important for western Yellow-billed Cuckoo nesting habitat

Western Yellow-billed Cuckoo (Cuckoo; Coccyzus americanus ) populations continue to decline in the western United States despite efforts to increase availability of riparian forest. Cuckoos have unique breeding habitat requirements such as large contiguous tracts of riparian forest (>80 ha), large estimated home ranges (20–90 ha), and dense vertical structure around the nest. However, local habitat-scale features may be missing in landscapes of predominantly mature riparian forest that may need to be specifically managed for nesting. We used historical nest data ( n = 95) from the South Fork Kern River Valley, California, from 1985 to 1996 to identify important nest site features that may be missing in current riparian forests. We found that increased canopy cover and vertical structure at all levels in the canopy greatly increased the probability of Cuckoo nesting. With smaller estimated effect sizes, the probability of Cuckoo nesting increased with increasing willows and forbs and smaller mean tree dbh. Cuckoos selected plots with disproportionately high percent willow cover relative to availability plots regardless of whether sites had low or high percent willow available. Counts of fledged young were positively related to willow percentage. No vegetation variable influenced daily survival rate which was 0.991 (LCI = 0.980, UCI = 0.996). Overall 17-day nest success was likely high (0.86, LCI = 0.71, UCI = 0.93). In the absence of natural processes that create early successional stage forest, specific management for early successional stage forest is needed to increase the probability of Cuckoo nesting and nest productivity.

California↗
USGS2021

Challenging our understanding of western Yellow-billed Cuckoo habitat needs and accepted management practices

Riparian restoration in the southwestern United States frequently involves planting cottonwood ( Populus spp.) and willow ( Salix spp.). In the absence of flooding and gap-forming disturbance, planted forests often senesce without further young tree recruitment. This has largely been the case in California riparian systems that historically supported state-endangered western Yellow-billed Cuckoo ( Coccyzus americanus ; Cuckoo). A decline in Cuckoo population numbers in the past 30 years has been associated with forest maturation. Other riparian species of concern show a concomitant decline, indicating the problem is not specific to Cuckoos. Although varying hypotheses exist for recent decline, alternative management practices have not been sufficiently explored to rule out breeding ground habitat quality as a major contributing factor. Few intensive Cuckoo datasets exist to test hypotheses about breeding habitat quality due to extremely low populations in the remaining occupied sites. We used a historical (1986–1996) spot mapping dataset from the South Fork Kern River Valley, CA to identify vegetation characteristics related to Cuckoo and five other sensitive riparian bird territory densities. We found Cuckoo densities were positively associated with increased vertical vegetative structure 1–5 m above ground with a threshold for mean tree height. Sensitive species densities were also related to vertical structure and started to decline with stand height greater than 6–8 m. Naturally regenerated sites had higher densities of most sensitive bird species than planted sites. We provide ideas for restoring mature forest with little vertical structure.

California↗
USGS2011

Latitudinal variation in reproductive strategies by the migratory Louisiana Waterthrush

We evaluated hypotheses that seek to explain breeding strategies of the Louisiana Waterthrush (Parkesia motacilla) that vary across a latitudinal gradient. On the basis of data from 418 nests of color-banded individuals in southwestern Pennsylvania and 700 km south in the Georgia Piedmont, we found that clutch size in replacement nests and probability of renesting were significantly greater in Pennsylvania (clutch size 4.4; renesting probability 0.66) than in Georgia (clutch size 3.8; renesting probability 0.54). Contrasts of the remaining measures of breeding were not statistically significant, and, in particular, mean daily nest survival in the two study areas was nearly identical (0.974 in Pennsylvania; 0.975 in Georgia). An individual-based model of fecundity (i.e., number of fledged young per adult female), predicted that approximately half of the females in both Pennsylvania and Georgia fledge at least one young, and mean values for fecundity in Pennsylvania and Georgia were 2.28 and 1.91, respectively. On the basis of greater support for the food-limitation hypothesis than for the season-length hypothesis, the trade-off between breeding in a region with more food but making a longer migration may be greater for waterthrushes breeding farther north than for those breeding farther south. ?? The Cooper Ornithological Society 2011.

Condor↗
USGS2009

Conservation of northern bobwhite on private lands in Georgia, USA under uncertainty about landscape-level habitat effects

Large-scale habitat enhancement programs for birds are becoming more widespread, however, most lack monitoring to resolve uncertainties and enhance program impact over time. Georgia?s Bobwhite Quail Initiative (BQI) is a competitive, proposal-based system that provides incentives to landowners to establish habitat for northern bobwhites (Colinus virginianus). Using data from monitoring conducted in the program?s first years (1999?2001), we developed alternative hierarchical models to predict bobwhite abundance in response to program habitat modifications on local and regional scales. Effects of habitat and habitat management on bobwhite population response varied among geographical scales, but high measurement variability rendered the specific nature of these scaled effects equivocal. Under some models, BQI had positive impact at both local farm scales (1, 9 km2), particularly when practice acres were clustered, whereas other credible models indicated that bird response did not depend on spatial arrangement of practices. Thus, uncertainty about landscape-level effects of management presents a challenge to program managers who must decide which proposals to accept. We demonstrate that optimal selection decisions can be made despite this uncertainty and that uncertainty can be reduced over time, with consequent improvement in management efficacy. However, such an adaptive approach to BQI program implementation would require the reestablishment of monitoring of bobwhite abundance, an effort for which funding was discontinued in 2002. For landscape-level conservation programs generally, our approach demonstrates the value in assessing multiple scales of impact of habitat modification programs, and it reveals the utility of addressing management uncertainty through multiple decision models and system monitoring.

Landscape Ecology↗
USGS2009

Survival of radio-implanted drymarchon couperi (Eastern Indigo Snake) in relation to body size and sex

Drymarchon couperi (eastern indigo snake) has experienced population declines across its range primarily as a result of extensive habitat loss, fragmentation, and degradation. Conservation efforts for D. couperi have been hindered, in part, because of informational gaps regarding the species, including a lack of data on population ecology and estimates of demographic parameters such as survival. We conducted a 2- year radiotelemetry study of D. couperi on Fort Stewart Military Reservation and adjacent private lands located in southeastern Georgia to assess individual characteristics associated with probability of survival. We used known-fate modeling to estimate survival, and an information-theoretic approach, based on a priori hypotheses, to examine intraspecific differences in survival probabilities relative to individual covariates (sex, size, size standardized by sex, and overwintering location). Annual survival in 2003 and 2004 was 0.89 (95% CI = 0.73-0.97, n = 25) and 0.72 (95% CI = 0.52-0.86; n = 27), respectively. Results indicated that body size, standardized by sex, was the most important covariate determining survival of adult D. couperi, suggesting lower survival for larger individuals within each sex. We are uncertain of the mechanisms underlying this result, but possibilities may include greater resource needs for larger individuals within each sex, necessitating larger or more frequent movements, or a population with older individuals. Our results may also have been influenced by analysis limitations because of sample size, other sources of individual variation, or environmental conditions. ?? 2009 by The Herpetologists' League, Inc.

Herpetologica↗
USGS2009

Indigo snake capture methods: effectiveness of two survey techniques for Drymarchon couperi in Georgia

Drymarchon couperi (Eastern Indigo Snake), a federally threatened species of the southeastern Coastal Plain, has presented challenges for surveyors, with few reliable methods developed for its detection or monitoring. Surveys for D. couperi at potential underground shelters conducted in late fall through early spring have been relatively successful when conducted by experienced surveyors, especially in the northern portions of the range. However, trapping efforts for D. couperi conducted throughout the range have met with limited success. To further evaluate detection methods, we conducted trapping and surveying from December 2002 to April 2004 in areas known to support D. couperi in southeastern Georgia. We captured 18 D. couperi through surveys of potential underground shelters from December 2002 to March 2003 (14 person-hours per capture) and six individuals through trapping (141 trap days or 27 in-field person-hours per capture). Trapping was most successful during early fall, a period when surveys are often less effective compared to those conducted in late fall through early spring. We recommend a combination of surveys from mid-fall through March in conjunction with trapping, especially from late-summer through fall in the northern portions of the snake?s range. We also recommend further experimentation with alternative trap designs and survey methods for D. couperi.

Florida Scientist↗
USGS2008

Design for a region-wide adaptive search for the ivorybilled woodpecker with the objective of estimating occupancy and related parameters

We describe a survey design and field protocol for the Ivory-billed Woodpecker (Campephilus principalis) search effort that will: (1) allow estimation of occupancy, use, and detection probability for habitats at two spatial scales within the bird?s former range, (2) assess relationships between occupancy, use, and habitat characteristics at those scales, (3) eventually allow the development of a population viability model that depends on patch occupancy instead of difficult-to-measure demographic parameters, and (4) be adaptive, allowing newly collected information to update the above models and search locations. The approach features random selection of patches to be searched from a sampling frame stratified and weighted by patch quality, and requires multiple visits per patch. It is adaptive within a season in that increased search activity is allowed in and around locations of strong visual and/or aural evidence, and adaptive among seasons in that habitat associations allow modification of stratum weights. This statistically rigorous approach is an improvement over simply visiting the ?best? habitat in an ad hoc fashion because we can learn from prior effort and modify the search accordingly. Results from the 2006-07 search season indicate weak relationships between occupancy and habitat (although we suggest modifications of habitat measurement protocols), and a very low detection probability, suggesting more visits per patch are required. Sample size requirements will be discussed.

Book chapter↗
USGS2006

Cumulative uncertainty in measured streamflow and water quality data for small watersheds

The scientific community has not established an adequate understanding of the uncertainty inherent in measured water quality data, which is introduced by four procedural categories: streamflow measurement, sample collection, sample preservation/storage, and laboratory analysis. Although previous research has produced valuable information on relative differences in procedures within these categories, little information is available that compares the procedural categories or presents the cumulative uncertainty in resulting water quality data. As a result, quality control emphasis is often misdirected, and data uncertainty is typically either ignored or accounted for with an arbitrary margin of safety. Faced with the need for scientifically defensible estimates of data uncertainty to support water resource management, the objectives of this research were to: (1) compile selected published information on uncertainty related to measured streamflow and water quality data for small watersheds, (2) use a root mean square error propagation method to compare the uncertainty introduced by each procedural category, and (3) use the error propagation method to determine the cumulative probable uncertainty in measured streamflow, sediment, and nutrient data. Best case, typical, and worst case data quality scenarios were examined. Averaged across all constituents, the calculated cumulative probable uncertainty (%) contributed under typical scenarios ranged from 6% to 19% for streamflow measurement, from 4% to 48% for sample collection, from 2% to 16% for sample preservation/storage, and from 5% to 21% for laboratory analysis. Under typical conditions, errors in storm loads ranged from 8% to 104% for dissolved nutrients, from 8% to 110% for total N and P, and from 7% to 53% for TSS. Results indicated that uncertainty can increase substantially under poor measurement conditions and limited quality control effort. This research provides introductory scientific estimates of uncertainty in measured water quality data. The results and procedures presented should also assist modelers in quantifying the quality of calibration and evaluation data sets, determining model accuracy goals, and evaluating model performance.

Transactions of the ASABE↗
USGS2006

Risky business: Site selection by Acadian Flycatchers under threat of nest predation and brood parasitism

Habitat quality is determined not only by habitat structure and the availability of resources, but also by competitors, cooperators, predators, and parasites. We hypothesized that, for passerines, minimizing risk from avian nest predators and brood parasites is an important factor in selecting a breeding site. Through the early part of two breeding seasons, we spot-mapped locations of Acadian Flycatchers (Empidonax virescens, territory selectors), Red-bellied Woodpeckers (Melanerpes carolinus, nest predators) and Brown-headed Cowbirds (Molothrus ater, brood parasites) in a 56-ha study area within an extensive bottomland hardwood forest. We were thereby able to determine the order of flycatcher territory settlement and nest initiation in relation to risk of predation and parasitism, while accounting for habitat structure. Male settlement was influenced by both habitat structure and risk avoidance. However, risk trom woodpeckers was relatively more important in the first season and risk from cowbirds in the second, evidently due to differences in the relative abundance of predator and brood-parasite in each year. For male flycatchers, settlement choices appear to be flexible in the face of changing 'risk landscapes.' For females, habitat structure was the most important predictor of nest site selection. Even so, there was evidence that females avoided cowbirds. Surprisingly, nest site selection was positively associated with woodpecker abundance in the first season when woodpeckers were present in greater numbers. Possible explanations for this contradictory result are discussed.

Book chapter↗
USGS2006

Detrimental impacts of radiotransmitters on juvenile Louisiana Waterthrushes

The Louisiana Waterthrush (waterthrush: Seiurus motacilla) is a forest-dwelling, Nearctic-Neotropical migratory passerine that nests along streams. We attached radiotransmitters (0.6-0.8 g) to 12 nestling waterthrushes using snug, elastic loops. At three nests, adult waterthrushes were videotaped removing radio-tagged young from the nest. In addition, we recovered nine radio-backpacks (with two still attached to the carcasses of nestlings) near nests within a few days after attaching transmitters. Only one of 12 radio-tagged young was relocated more than 24 h after attaching the transmitter. Thus, the method of transmitter attachment we used was not effective. Using snug, nonelastic loops (e.g., nylon) for the harness may reduce the loss of transmitters, but may injure the skin as fledglings grow. Other possible alternatives include (1) gluing the transmitter to skin on the back of nestlings, (2) capturing fledglings in mist nets and attaching transmitters a week or more after fledging by which time contour feathers have grown and the likelihood of a parent removing the transmitter may be reduced, or (3) attempting to monitor fledglings without attaching transmitters. The success of the latter two alternatives would likely be enhanced by attaching transmitters to adults and then tracking them to locate their still-dependent fledglings.

Journal of Field Ornithology↗
USGS2000

Estimating forest crown area removed by selection cutting: a linked regression-GIS approach based on stump diameters

The purpose of this research was to develop a model that could be used to provide a spatial representation of uneven-aged silvicultural treatments on forest crown area. We began by developing species-specific linear regression equations relating tree DBH to crown area for eight bottomland tree species at White River National Wildlife Refuge, Arkansas, USA. The relationships were highly significant for all species, with coefficients of determination (r(2)) ranging from 0.37 for Ulmus crassifolia to nearly 0.80 for Quercus nuttalliii and Taxodium distichum. We next located and measured the diameters of more than 4000 stumps from a single tree-group selection timber harvest. Stump locations were recorded with respect to an established gl id point system and entered into a Geographic Information System (ARC/INFO). The area occupied by the crown of each logged individual was then estimated by using the stump dimensions (adjusted to DBHs) and the regression equations relating tree DBH to crown area. Our model projected that the selection cuts removed roughly 300 m(2) of basal area from the logged sites resulting in the loss of approximate to 55 000 m(2) of crown area. The model developed in this research represents a tool that can be used in conjunction with remote sensing applications to assist in forest inventory and management, as well as to estimate the impacts of selective timber harvest on wildlife.

Forest Ecology and Management↗
USGS2000

An evaluation strategy for conservation goals of the Mississippi Alluvial Valley

The population goals and habitat objectives established by the Mississippi Alluvial Valley Migratory Bird Initiative are based on several unverified assumptions. We have developed an evaluation strategy that identifies research needed to verify these assumptions. We also have outlined a monitoring strategy designed to track progress toward achieving habitat objectives and population goals.

Book chapter↗
USGS2000

Estimating survival of neotropical-nearctic migratory birds: Are they dead or just dispersed?

The most common method for estimating adult survival in site specific demographic studies of Neotropical-Nearctic migratory bird populations is by measuring the return rate of marked individuals. Return rate historically has been defined as the ratio of resighted birds to the total number banded (i.e., with bands on) the prior year, and has been used as a 'minimum number known alive' estimate of survival. Return rates potentially underestimate true survival (the complement of mortality) for two reasons. First, not every bird that returns to the study plot is actually encountered by the field researcher, and second, not every bird that survives to the next breeding season returns to the study plot. We use a branching-tree diagram to illustrate that the essential problem with return rate methodology is that the fate of birds that are not resighted is unknown. It is widely recognized that Cormack-Jolly-Seber based analyses greatly improve 'survival' estimates by incorporating the probability of resighting a bird given that it is alive and present on the study plot. However, these estimates will underestimate true survival if birds disperse beyond the range of the resighting effort. Because long-distance dispersal events are an important component of migratory bird ecology, we cannot estimate true survival from return rate data until better information on dispersal distances and probabilities are collected. We discuss several conservation implications of underestimating survival,.and suggest terminology that is potentially less confusing.

Book chapter↗
USGS2000

Population and habitat assessment: Monitoring bird populations over large areas: Introduction

Monitoring provides essential information about status and change in bird populations. For Neotropical Migrant Birds (NTMBs), the North American Breeding Bird Survey (BBS) has been particularly influential in documenting regional population change and often is cited as justification for management actions. However, as with most bird surveys, the design of the BBS, and the geographic scale of the information, often limits its use either in evaluating the response of bird populations to management, or in identifying causes of population change.

Book chapter↗
USGS1999

Does nonrandom nest placement imply nonrandom nest predation?: A reply

In response to the critique by Schmidt and Whelan (Condor 101(4):916-920, 1999), we find that the relationship between nest success and tree selectivity is dependent upon inclusion or exclusion of particular tree species, whether or not years are pooled, and the selectivity index used. We question their use of point estimates of nest success with extremely high variances, defend our index, question the application of the Chesson (1983) index to our data, and explain the need to analyze years separately. Bottomland hardwood forest systems are extremely variable; hydroperiods alter the suitability of nesting substrates, availability of alternative food, and behavior of predators and their prey. Given these features, actively searching for Acadian Flycatcher (Empidonax virescens) nests is seldom an efficient predator foraging strategy. Therefore, these predation events are best described as random; nests are principally encountered opportunistically by generalist predators while searching for other prey.

Condor↗
USGS1998

Acadian flycatcher nest placement: Does placement influence reproductive success?

We located 511 Acadian Flycatcher (Empidonax virescens) nests in bottomland hardwood forest of eastern Arkansas. Microhabitat characteristics were measured and their relationship with nest success evaluated. Fifty-two percent of all nesting attempts resulted in predation. Attributes of nest placement were similar between successful and unsuccessful nests, although successful nests were placed higher. Similarly, nonparasitized nests were typically higher than parasitized nests. Nests initiated late in the breeding season were placed in larger trees with higher canopy bases resulting in increased vegetation around the nest. Fifteen different tree species were used for nesting. Acadian Flycatchers chose nest trees in a nonrandom fashion, selecting Nuttall oak (Quercus nuttallii) and possumhaw (Ilex decidua) in greater proportions than their availability. However, there was no relationship between tree species used for nesting and nest success. Nest height was positively correlated with concealment at the nest site, supporting the predator-avoidance theory. No other attribute of nest placement differentiated successful nest sites, suggesting that nest predation is likely a function of random events in space and time.

Condor↗
USGS1998

The seventy-second Christmas bird count. 302. Southern Dorchester County, Md

We located 511 Acadian Flycatcher (Empidonax virescens) nests in bottomland hardwood forest of eastern Arkansas. Microhabitat characteristics were measured and their relationship with nest success evaluated. Fifty-two percent of all nesting attempts resulted in predation. Attributes of nest placement were similar between successful and unsuccessful nests, although successful nests were placed higher. Similarly, nonparasitized nests were typically higher than parasitized nests. Nests initiated late in the breeding season were placed in larger trees with higher canopy bases resulting in increased vegetation around the nest. Fifteen different tree species were used for nesting. Acadian Flycatchers chose nest trees in a nonrandom fashion, selecting Nuttall oak (Quercus nuttallii) and possumhaw (Ilex decidua) in greater proportions than their availability. However, there was no relationship between tree species used for nesting and nest success. Nest height was positively correlated with concealment at the nest site, supporting the predator-avoidance theory. No other attribute of nest placement differentiated successful nest sites, suggesting that nest predation is likely a function of random events in space and time.

Condor↗