USGS ScienceSearch

Geology topics

Michael R. Miller

Publications and source records attributed to Michael R. Miller.

At least 19 recordsLinked to original sources

Wildfire reveals transient changes to individual traits and population responses of a native bumble bee ( Bombus vosnesenskii )

1. Fire-induced changes in the abundance and distribution of organisms, especially plants, can alter resource landscapes for mobile consumers driving bottom-up effects on their population sizes, morphologies, and reproductive potential. We expect these impacts to be most striking for obligate visitors of plants, like bees and other pollinators, but these impacts can be difficult to interpret due to the limited information provided by forager counts in the absence of survival or fitness proxies. 2. Increased bumble bee worker abundance is often coincident with the pulses of flowers that follow recent fire. However, it is unknown if observed postfire activity is due to underlying population growth or a stable pool of colonies recruiting more foragers to abundant resource patches. This distinction is necessary for determining the net impact of disturbance on bumble bees: are there population-wide responses or do just a few colonies reap the rewards? 3. We estimated colony abundance before and after fire in burned and unburned areas using a genetic mark-recapture framework. We paired colony abundance estimates with measures of body size, counts of queens, and estimates of foraging and dispersal to assess changes in worker size, reproductive output, and landscape-scale movements. 4. Higher floral abundance following fire not only increased forager abundance, but also the number of colonies from which those foragers came. Importantly, despite a larger population size we also observed increased mean worker size. Two years following fire, queen abundance was higher in both burned and unburned sites, potentially due to the dispersal of queens from burned into unburned areas. The effects of fire were transient; within two growing seasons, worker abundance was substantially reduced across the entire sampling area and body sizes were similar between burned and unburned sites. 5. Our results reveal how disturbance can temporarily release populations from resource limitation, boosting the genetic diversity, body size, and reproductive output of populations. Given that the effects of fire on bumble bees acted indirectly through pulsed resource availability, it is likely our results are generalizable to other situations, such as habitat restorations, where resource density is enhanced within the landscape.

California

Forests do not limit bumble bee foraging movements in a montane meadow complex

1. Understanding the roles of habitat fragmentation and resource availability in shaping animal movement are integral for promoting species persistence and conservation. For insects like bumble bees, their movement patterns affect the survival and reproductive potential of their colonies as well as the pollen flow of plant species. However, our understanding of their mobility or the impact of putative barriers in natural environments is limited due to the technical difficulties of studying wild populations. 2. We used genetic mark-recapture to estimate the foraging distance, resource use, and site connectivity of two bumble bee species in a montane meadow complex composed of open meadows within a matrix of forest. 3. There was no evidence that forests or changes in landcover function as barriers to the fine‐scale movement for either species. Substantially greater colony‐specific foraging distances were found for Bombus vosnesenskii (maximum: 1867 m) compared to Bombus bifarius (maximum: 362 m). Despite this difference in absolute range, both species were detected across putative forest barriers at frequencies expected by uninhibited movement. Siblings separated by greater distances were more likely to be foraging on different floral species, potentially suggesting a resource‐based motivation for movement. 4. These results suggest that bumble bee foraging patterns are influenced by species-specific differences in movement capacity, with little influence of matrix composition between resource patches. They also support the perspective that habitat conservation for bumble bees should prioritize providing abundant and diverse patches of resources within species-specific movement radii with less emphasis on matrix composition.

Ecological Entomology

Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape

Aim Climate warming is causing extensive loss of glaciers in mountainous regions, yet our understanding of how glacial recession influences evolutionary processes and genetic diversity is limited. Linking genetic structure with the influences shaping it can improve understanding of how species respond to environmental change. Here, we used genome-scale data and demographic modelling to resolve the evolutionary history of Lednia tumana , a rare, aquatic insect endemic to alpine streams. We also employed a range of widely used data filtering approaches to quantify how they influenced population structure results. Location Alpine streams in the Rocky Mountains of Glacier National Park, Montana, USA. Taxon Lednia tumana , a stonefly (Order Plecoptera) in the family Nemouridae. Methods We generated single nucleotide polymorphism data through restriction-site associated DNA sequencing to assess contemporary patterns of genetic structure for 11 L. tumana populations. Using identified clusters, we assessed demographic history through model selection and parameter estimation in a coalescent framework. During population structure analyses, we filtered our data to assess the influence of singletons, missing data and total number of markers on results. Results Contemporary patterns of population structure indicate that L. tumana exhibits a pattern of isolation-by-distance among populations within three genetic clusters that align with geography. Mean pairwise genetic differentiation ( F ST ) among populations was 0.033. Coalescent-based demographic modelling supported divergence with gene flow among genetic clusters since the end of the Pleistocene (~13-17 kya), likely reflecting the south-to-north recession of ice sheets that accumulated during the Wisconsin glaciation. Main conclusions We identified a link between glacial retreat, evolutionary history and patterns of genetic diversity for a range-restricted stonefly imperiled by climate change. This finding included a history of divergence with gene flow, an unexpected conclusion for a mountaintop species. Beyond L. tumana , this study demonstrates the complexity of assessing genetic structure for weakly differentiated species, shows the degree to which rare alleles and missing data may influence results, and highlights the usefulness of genome-scale data to extend population genetic inquiry in non-model species.

Montana

Northern Pintail

This medium-sized dabbling duck of slender, elegant lines and conservative plumage coloration is circumpolar in distribution and abundant in North America, with core nesting habitat in Alaska and the Prairie Pothole Region of southern Canada and the northern Great Plains. Breeders favor shallow wetlands interspersed throughout prairie grasslands or arctic tundra. An early fall migrant, the species arrives on wintering areas beginning in August, after wing molt, often forming large roosting and feeding flocks on open, shallow wetlands and flooded agricultural fields. The birds consume grains, marsh plant seeds, and aquatic invertebrates throughout fall and winter. Northern Pintails are among the earliest nesting ducks in North America, beginning shortly after ice-out in many northern areas. Individuals form new pair bonds each winter but are highly promiscuous during the nesting season, with mated and unmated males often involved in vigorous, acrobatic Pursuit Flights. Annual nest success and productivity vary with water conditions, predation, and weather. Females build nests on the ground, often far from water. Only the female incubates; her mate leaves shortly after incubation begins. Ducklings hatch together in one day, follow the female to water after a day in the nest, and fledge by July or August. Adults and ducklings consume mainly aquatic invertebrates during the breeding season. Predators and farming operations destroy many thousands of Northern Pintail nests annually; farming has also greatly reduced the amount of quality nesting cover available. Winter habitats are threatened by water shortages, agricultural development, contamination, and urbanization. Periods of extended drought in prairie nesting regions have caused dramatic population declines, usually followed by periods of recovery. Over the long term, however, the continental population of Northern Pintails has declined significantly from 6 million birds in the early 1970s to less than 3 million in the late 1980s and early 1990s. Since then, the population appears to have stabilized; in 2013, the estimate was 3.3 million birds, a large number but below conservation goals despite favorable wetland conditions in much of the prairie breeding region. Ongoing conservation measures, however, such as habitat restoration and enhancement of agricultural lands, as well as prudent harvest management, suggest that Northern Pintails should have a secure future in North America.

The Birds of North America

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

Rapid and inexpensive methods for genomewide single nucleotide polymorphism (SNP) discovery and genotyping are urgently needed for population management and conservation. In hybridized populations, genomic techniques that can identify and genotype thousands of species-diagnostic markers would allow precise estimates of population- and individual-level admixture as well as identification of 'super invasive' alleles, which show elevated rates of introgression above the genomewide background (likely due to natural selection). Techniques like restriction-site-associated DNA (RAD) sequencing can discover and genotype large numbers of SNPs, but they have been limited by the length of continuous sequence data they produce with Illumina short-read sequencing. We present a novel approach, overlapping paired-end RAD sequencing, to generate RAD contigs of >300–400 bp. These contigs provide sufficient flanking sequence for design of high-throughput SNP genotyping arrays and strict filtering to identify duplicate paralogous loci. We applied this approach in five populations of native westslope cutthroat trout that previously showed varying (low) levels of admixture from introduced rainbow trout (RBT). We produced 77 141 RAD contigs and used these data to filter and genotype 3180 previously identified species-diagnostic SNP loci. Our population-level and individual-level estimates of admixture were generally consistent with previous microsatellite-based estimates from the same individuals. However, we observed slightly lower admixture estimates from genomewide markers, which might result from natural selection against certain genome regions, different genomic locations for microsatellites vs. RAD-derived SNPs and/or sampling error from the small number of microsatellite loci (n = 7). We also identified candidate adaptive super invasive alleles from RBT that had excessively high admixture proportions in hybridized cutthroat trout populations.

Molecular Ecology

Hunting influences the diel patterns in habitat selection by northern pintails Anas acuta

Northern pintail Anas acuta (hereafter pintail) populations wintering within Suisun Marsh, a large estuarine managed wetland near San Francisco Bay, California,USA, have declined markedly over the last four decades. The reasons for this decline are unclear. Information on how hunting and other factors influence the selection of vegetation types and sanctuaries would be beneficial to manage pintail populations in SuisunMarsh. During 1991-1993, we radio-marked and relocated female pintails (individuals: N = 203, relocations: N = 7,688) within Suisun Marsh to investigate habitat selection during the non-breeding months (winter). We calculated selection ratios for different vegetation types and for sanctuaries, and examined differences in those ratios between hunting season (i.e. hunting and non-hunting), age (hatchyear and after-hatch-year), and time of day (daylight or night hours). We found that diel patterns in selection were influenced by hunting disturbance. For example, prior to the hunting season and during daylight hours, pintails selected areas dominated by brass buttons Cotula coronopifolia, a potentially important food source, usually outside of sanctuary boundaries. However, during the hunting season, pintails did not select brass buttons during daylight hours, but instead highly selected permanent pools, mostly within sanctuaries. Also, during the hunting season, pintails showed strong selection for brass buttons at night. Sanctuaries provided more area of permanent water pools than within hunting areas and appeared to function as important refugia during daylight hours of the hunting season. Wildlife managers should encourage large protected permanent pools adjacent to hunted wetlands to increase pintail numbers within wetland environments and responsibly benefit hunting opportunities while improving pintail conservation.

California

Spring migration and summer destinations of northern pintails from the coast of southern California

To examine pathways, timing, and destinations during migration in spring, we attached satellite-monitored transmitters (platform transmitting terminals) to 10 northern pintails ( Anas acuta ) during February 2001, at Point Mugu, Ventura County, California. This is a wintering area on the southern coast of California. We obtained locations from five adult males and three adult females every 3rd day through August. Average date of departure from the wintering area was 15 March ( SE = 3 days). We documented extended stopovers of ≥30 days for several northern pintails that could have accommodated nesting attempts (San Joaquin Valley, southwestern Montana, southern Alberta, north-central Nevada) or post-nesting molt (eastern Oregon, south-central Saskatchewan, northern Alaska, central Alberta). Wintering northern pintails from the southern coast of California used a wide range of routes, nesting areas, and schedules during migration in spring, which was consistent with the larger, wintering population in the Central Valley of California. Therefore, conservation of habitat that is targeted at stopover, nesting, and molting areas will benefit survival and management of both wintering populations.

California

Changes in the status of harvested rice fields in the Sacramento Valley, California: Implications for wintering waterfowl.

Harvested rice fields provide critical foraging habitat for wintering waterfowl in North America, but their value depends upon post-harvest treatments. We visited harvested ricefields in the Sacramento Valley, California, during the winters of 2007 and 2008 (recent period) and recorded their observed status as harvested (standing or mechanically modified stubble), burned, plowed, or flooded. We compared these data with those from identical studies conducted during the 1980s (early period). We documented substantial changes in field status between periods. First, the area of flooded rice increased 4-5-fold, from about 15% to >40% of fields, because of a 3-4-fold increase in the percentage of fields flooded coupled with a 37-41% increase in the area of rice produced. Concurrently, the area of plowed fields increased from <22% to >35% of fields, burned fields declined from about 40% to 1%, and fields categorized as harvested declined from 22-54% to <15%. The increased flooding has likely increased access to food resources for wintering waterfowl, but this benefit may not be available to some goose species, and may be at least partially countered by the increase of plowed fields, especially those left dry, and the decrease of fields left as harvested.We encourage waterfowl managers to implement a rice field status survey in the Sacramento Valley and other North American rice growing regions as appropriate to support long-term monitoring programs and wetland habitat conservation planning for wintering waterfowl.

California

Ecology of Greater Sage-Grouse in the Bi-State Planning Area Final Report, September 2007

Conservation efforts for greater sage-grouse (Centrocercus urophasianus), hereafter sage-grouse, are underway across the range of this species. Over 70 local working groups have been established and are implementing on-the-ground sage-grouse oriented conservation projects. Early on in this process, the California Department of Fish and Game (CDFG) recognized the need to join in these efforts and received funding from the U.S. Fish and Wildlife Service (USFWS) under the Candidate Species Conservation Program to help develop a species conservation plan for sage-grouse in the Mono County area. This conservation plan covers portions of Alpine, Mono, and Inyo counties in California and Douglas, Esmeralda, Lyon, and Mineral counties in Nevada. A concurrent effort underway through the Nevada Governor's Sage-grouse Conservation Team established Local Area Working Groups across Nevada and eastern California. The Mono County populations of sage-grouse were encompassed by the Bi-State Local Planning Area, which was comprised of six population management units (PMUs). The state agencies from California (CDFG) and Nevada (Nevada Department of Wildlife; NDOW) responsible for the management of sage-grouse agreed to utilize the process that had begun with the Nevada Governor's Team in order to develop local plans for conservation planning and implementation. Resources from the USFWS were applied to several objectives in support of the development of the Bi-State Local Area Sage-grouse Conservation Plan through a grant to the U.S. Geological Survey (USGS). Objectives included: (1) participate in the development of the Bi-State Conservation Plan, (2) compile and synthesize existing sage-grouse data, (3) document seasonal movements of sage-grouse, (4) identify habitats critical to sage-grouse, (5) determine survival rates and identify causal factors of mortality, (6) determine nest success and brood success of sage-grouse, and (7) identify sage-grouse lek sites. Progress reports completed in 2004 and 2005 addressed each of the specific objectives and this final report focuses on the biological information gathered in support of local conservation efforts. Participation in the development of the Bi-State Local Area Conservation Plan was accomplished on multiple scales. Beginning in the fall of 2002, USGS personnel began participating in meetings of local stakeholders involved in the development of a sage-grouse conservation plan for the Bi-State planning area. This included attendance at numerous local PMU group meetings and field trips as well as participating on the technical advisory committee (TAC) for the Bi-State group. Whenever appropriate, ongoing results and findings regarding sage-grouse ecology in the local area were incorporated into these working group meetings. In addition, the USGS partnered with CDFG to help reorganize one of the local PMU groups (South Mono) and edited that portion of the Bi-State plan. The USGS also worked closely with CDFG to draft a description of the state of knowledge for sage-grouse genetic information for inclusion in the Bi-State Conservation Plan. The first edition of the Bi-State Conservation Plan for Greater Sage-Grouse was completed in June 2004 (Bi-State Sage-grouse Conservation Team 2004). This report is organized primarily by PMU to facilitate the incorporation of these research findings into the individual PMU plans that compose the Bi-State plan. Information presented in this report was derived from over 7,000 radio-telemetry locations obtained on 145 individual sage-grouse during a three year period (2003-2005). In addition, we collected detailed vegetation measurements at over 590 habitat sampling plots within the study area including canopy cover, shrubs, forbs, and grasses diversity. Vegetation data collection focused on sage-grouse nests, and brood-use areas. Additionally we collected data at random sites to examine sage-grouse habitat relationships within the study area. The majori

Open-File Report

Evaluation of current population indices for band-tailed pigeons

There is no formal population survey specifically designed to index population abundance of band-tailed pigeons ( Patagioenas fasciata ) throughout their range. Data from the Breeding Bird Survey (BBS), Washington and Oregon Mineral-Site (WAORMS) surveys, and Washington Call Count (WACC) survey offer evidence of long-term population decline. We investigated the potential to augment BBS, WACC, and WAORMS surveys to provide more precise population indices for the Pacific Coast band-tailed pigeon ( P. f. monilis ) and augment the BBS to index the Interior or “Four Corners” population ( P. f. fasciata ). We calculated statistical power, the probability of detecting population change given that a change exists, and analyzed survey data to investigate the effect of route length, survey repetition, and sample size. Sample sizes of 50 sites or routes yielded corresponding powers of 99% for WAORMS, 54% for WACC, and 30% for Pacific BBS, to detect a 10% annual change over a 5-year period (a = 0.10). Route length and repetition of surveys had little impact on power. Mineral-site surveys provide the greatest potential to monitor breeding populations and detect short-term trends in the Pacific Coast population. New survey techniques are needed for the Interior band-tailed pigeon.

Wildlife Society Bulletin

Science support for managing migratory waterfowl.

Migratory birds in North America are an international resource shared by Canada, the United States, and Mexico. Ultimate population management authority in the U.S. lies with the U.S. Fish and Wildlife Service (FWS), but states participate in development of management decisions through the Flyway system. The FWS, state wildlife agencies, and nongovernmental organizations participate through independent actions and cooperative Joint Ventures under the North American Waterfowl Management Plan (NAWMP) to acquire, protect, restore, and enhance wetlands and other habitats critical to the long-term conservation of breeding, migrating, and wintering waterfowl. A thorough base of scientific information is required to support and evaluate waterfowl populations and habitat management in North America.

WERC Fact Sheet

The northern pintail in North America: status and conservation needs of a struggling population

The number of northern pintails (Anas acuta) in North America continues to be low despite sub- stantially improved wetland habitat conditions as recorded by the May Breeding Population and Habitat Survey (May Survey, United States Fish and Wildlife Service [USFWS] 1998; Figure 1). In 1993-97, following extended drought during the 1980s and early 1990s, favorable precipitation pat- terns returned to the critical waterfowl nesting areas of the northern Great Plains of the United States (U.S.) and Canada (USFWS 1997), the area known as the Prairie Pothole Region (PPR, Bellrose 1980). Historically, when the number of wetlands (May ponds) counted on the May Survey increased in the PPR, pintail breeding populations (BPOP) also increased (e.g., Smith 1970). However, even though May ponds attained record high levels 1996 and 1997, the expected increase in pintail populations did not occur (Figure 1). Even after a 30% increase in the BPOP between 1996 and 1997, pintails remained 19% below the long-term average and 36% below the North American Waterfowl Management Plan (NAWMP) goal of 5.6 million (USFWS et al. 1994); additionally, peaks and lows in pintail BPOP have been successively lower since 1955-56 (Figure 1). In contrast, all other PPR-nest- ing dabbling ducks (tribe Anatini) rebounded in the 1990s to levels that exceeded objectives set by NAWMP (USFWS 1997). The minimal recovery of pintails is perplexing, given the very large popula- tions attained during previous periods of abundant May ponds (Figure 1).

Wildlife Society Bulletin

Survival of adult female northern pintails in the Sacramento Valley, California

North American populations of northern pintails (Anas acuta) declined between 1979 and the early 1990s. To determine if low survival during winter contributed to declines, we estimated winter (last week of Aug-Feb 1987-90) survival for 190 adult (after hatching yr [AHY]) female radio-tagged pintails in late summer in Sacramento Valley (SACV), California. Survival rates did not vary by winter ( P = 0.808), among preseason, hunting season, or postseason intervals ( P = 0.579), or by body mass at time of capture ( P = 0.127). Premolt (wing) pintails ( n = 10) tended to survive at a lower rate (0.622, SE = 0.178) than pintails that had already replaced flight feathers (0.887, SE = 0.030) ( P = 0.091). The pooled survival (all years) estimate for the 180-day winter was 0.874 (SE = 0.031). Hunting mortality rate (0.041-0.087) and nonhunting mortality rate (0.013-0.076) did not differ among years ( P = 0.332) or within years (all P > 0.149). Legal hunting ( n = 7), predation ( n = 4), cholera ( n = 2), illegal shooting ( n = 2), botulism ( n = 1), and unknown cause ( n = 1) accounted for all mortality. Nonwintering survival (annu. survival/winter survival = 0.748) was lower than winter survival; thus, if gains in annual survival are desired for this population, managers should first examine the breeding-migration period for opportunities to achieve increases.

California

An evaluation of techniques to measure contour feather molt in ducks

We evaluated 3 techniques (air jet, flat skin, grab sample) to assess molt in dead waterfowl (green- winged teal [ Anas crecca ] and king eider [ Somateria spectabilis ]). The air jet technique was fast and required no specimen preparation. The flat skin technique required lengthy preparation time after which molt was assessed quickly. Both techniques underestimated the extent of molt (P < 0.01). The grab sample technique needed no preparation but involved time-consuming counting to obtain the molt assessment. The grab sample was preferred when study skins did not need to be preserved because it was easy to conduct, and it was repeatable and more accurate than the other techniques.

California

Estimating carcass fat and protein in northern pintails during the nonbreeding season

I used northern pintails ( Anas acuta ) collected from August through March 1979-82 in the Sacramento Valley, California to derive equations to predict ether-extracted carcass fat, carcass protein, and skeletal lean dry weight. Ether-extracted carcass fat was best predicted by total fat depot weight (wet skin, abdominal fat, and intestinal fat) (r 2 = 0.94) and estimates based on carcass water content (r 2 = 0.93-0.98). Measured carcass protein was best predicted by a multiple regression including total protein depot weight (breast muscles, leg muscles, and gizzard) and tarsus length (R 2 = 0.79). I predicted skeletal lean dry weight by a multiple regression incorporating culmen, tarsus, and wing length (R 2 = 0.77). Predicted carcass fat agreed well with measured carcass fat in an independent data set of 30 pintails using total fat depot (r 2 = 0.92-0.96) and carcass water (r 2 = 0.97-0.99), but predicted carcass protein agreed less well with measured protein.

California

Fall and winter foods of northern pintails in the Sacramento Valley, California

Food habits of northern pintails ( Anas acuta ) were investigated on 3 national wildlife refuges in the western portion of the Sacramento Valley, California, from August to March 1979-82. Pintails consumed >97% (aggregate % dry wt) plant food during diurnal foraging on national wildlife refuge rice, summer- irrigated, and summer-dry habitats from August through January. Invertebrate use increased to 28.9-65.6% of the diet in these habitats during February and March. Rice, swamp timothy ( Heleochloa schoenoides ), flatsedges ( Cyperus spp.), common barnyardgrass ( Echinochloa crusgalli ), southern naiad ( Najas guadalupensis ), and smartweed ( Polygonum spp.) seeds, miscellaneous vegetation, snails (Gastropoda), and midge (Diptera) and water beetle (Coleoptera) larvae were most important. These foods usually were taken proportional to or greater than availability. Rice was the most important food of pintails feeding nocturnally off the refuges in harvested rice fields from October through January (99.7%) and February and March (63%; barnyardgrass formed 31% of the diet). In August and October, some pintails consumed invertebrates or bulrush ( Scirpus spp.) seedlings in marshes soon after feeding in refuge rice (Aug) or harvested commercial rice fields (Oct), thereby increasing dietary protein. In late winter, females and males obtained similar (P > 0.05) percentages of invertebrates from refuge habitats. Important dietary seeds and invertebrates contained high protein or metabolizable energy content. Management should maintain adequate seed production in fall and mid-winter and invertebrate biomass in late winter.

California

Molt chronology of northern pintails in California

Intensity and chronology of molt in 10 feather groups (head, neck, breast, belly, back, rump, side, scapular, tertial, and tail) were measured using percentages of developing feathers (pinfeathers) converted to molt scores (0-100) in samples plucked monthly from northern pintails ( Anas acuta ) collected by shooting from August through March 1980-82 in the Sacramento Valley, California. Data to supplement sample size of immatures were obtained from October 1982 through January 1983. Molt scores of the prealternate molt peaked (30-40% pinfeathers) in immature and adult females and adult males in October when nearly all feather groups were molting. The prealternate molt in immature males did not peak until November. Adult males nearly completed this molt by December; no new feather growth occurred after January. Immature males were still growing new neck, side, rump, scapular, and tertial feathers in December. Molt scores of the prebasic molt among adult and immature females peaked (30-40% new growth) in February in both years. The prealternate molt of breast and belly feathers (both sexes) peaked earlier (Sep) than molt of most other feathers (Oct). Increased molt scores in peak months were a function of a disproportionate increase of molt activity within each feather group and the number of feather groups with molt. Molt scores of the prebasic molt in adult females were less during December and January of the dry (1980-81) than the wet (1981-82) winter. Restriction or delay of molt may conserve energy or other nutrients during poor habitat conditions.

California