Valley Habitats: A technical guidance series for private land managers in California's Central Valley
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Valley Habitats↗
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Sprague’s Pipits (Anthus spragueii) occupying high-elevation intermontane valley habitat throughout the breeding season in southwest Montana
Sprague's Pipit ( Anthus spragueii ) is an imperiled bird species that breeds in grasslands of the northern Great Plains of North America. While conducting avian surveys in the Centennial Valley, Beaverhead County, southwest Montana, during spring and summer 2023, we detected approximately 10 male Sprague's Pipits performing aerial displays. These represent the first detailed observations of Sprague's Pipits in Beaverhead County, Montana, and the first confirmed observations of territorial displays therein. Subsequent detections included multiple adults, one of which was seen flying with food in its bill. We hypothesize that these observations represent a small but previously undescribed breeding population occurring above 2000 m elevation, which is higher than elevations at which this species is generally thought to breed. Our discovery also expands the known breeding habitat of this species to include intermontane valley bottoms, raising questions of whether the historical range included this habitat prior to its large-scale modifications across western North America and contemporary global change. These additions to our understanding of Sprague's Pipit ecology may be important for both land managers in the region and conservation efforts for this species. The evidence described here, of a breeding population of Sprague's Pipits in the Centennial Valley, Montana, may warrant further investigations in intermontane valleys throughout the region to better understand the breeding extent and the management actions needed to conserve this species and its habitat.
Montana↗
Long-term Monitoring of Valley Oak Habitats in the Santa Monica Mountains. Report to the Superintendent, Santa Monica Mountains National Recreation Area
No abstract available at this time
Report↗
Establishing an Agassiz’s Desert Tortoise monitoring program within the Coachella Valley multiple species habitat conservation plan area: Final report to the Coachella Valley conservation commission on work performed near the Orocopia Mountains
In support of the goals of the Coachella Valley Multiple Species Habitat Conservation Plan and Natural Community Conservation Plan (CVMSHCP/NCCP), a population of Agassiz’s desert tortoises ( Gopherus agassizii ) was marked and studied to establish a desert tortoise monitoring program near the Orocopia Mountains beginning in early 2017 and ending in the summer of 2018, following the epic drought of 2012‒2016. This effort compliments a similar effort in the nearby mouth of Cottonwood Canyon in 2015‒2016. Surveys were performed to locate tortoises, tortoise burrows, and tortoise remains at the eastern end of the CVMSHCP area north of the Orocopia Mountains and south of Interstate 10 in Riverside County, California. Although the area is considered Critical Habitat for the recovery of tortoise populations, it was heavily impacted by military training activities in the early 1940s and continues to be impacted by off-highway vehicle use. Data were collected from all live and dead tortoise specimens encountered. Only 22 live tortoises were found during transects covering approximately 21 km 2 of habitat surveyed. The sex ratio of live adult tortoises was strongly biased toward males and the sex ratio of recently (4‒5 years) dead carcasses during the long drought was strongly biased toward females. High female mortality may have resulted from the interaction of drought (including increased predation) and the reproductive strategy of tortoises. We located only one new live tortoise in the drought year of 2018 when there was no germination of winter annual food plants. A subsample of nine tortoises was outfitted with radio transmitters, and females (n = 4) were X-radiographed at approximately 10-day intervals from April–July. Mean clutch size was about 4 eggs as is typical for tortoises in this region. Additional tortoises were located opportunistically in and around the Santa Rosa Mountains (located in the southern end of the CVMSHCP area), and these tortoises were also marked for future identification. Blood samples were taken from adult tortoises and scute clips were taken from a subset of juveniles for ongoing studies to determine genetic diversity and relationships of desert tortoises within the CVMSHCP/NCCP area and beyond. The low tortoise density and high adult female mortality observed by us and others in the area may compromise the long-term viability of the population, especially given published predictions of the negative effects of future droughts on tortoises in the region.
California↗
Population trends of birds wintering in the Central Valley of California
Since the 1970s, the Central Valley of California has seen a large investment in preservation and restoration of wetlands and riparian areas. At the same time, grasslands have been lost to vineyards, orchards, and residential development at an accelerating rate. We analyzed data from 17 Christmas Bird Count circles that were surveyed regularly between winter 1978–79 and winter 2013–14 to document population trends for birds wintering in this region. We selected 112 taxa (species or species groups) that were relatively abundant and widespread in the Central Valley during winter and used a hierarchical model to estimate annual rates of population change from the count data while accounting for varying survey effort. A much larger proportion of taxa showed positive (46%) than negative (18%) trends; about a third (36%) showed no detectable change. Central Valley habitats that showed the highest proportion of taxa with increasing vs. decreasing trends were riparian (59% vs. 9%; n = 32), wetlands (49% vs. 11%; n = 47), and open water (44% vs. 0%; n = 9), likely reflecting the conservation efforts in these habitats in recent decades. In contrast, a greater proportion of the taxa associated with grasslands and other open habitats (n = 25) showed decreases (48%) than increases (28%). As expected, species that adapt well to areas of human habitation showed stable or increasing trends. Examples of such species with strong positive trends include Anna's Hummingbird ( Calypte anna ), Black Phoebe ( Sayornis nigricans ) and recent Central Valley arrivals, Eurasian Collared-Dove ( Streptopelia decaocto ) and Great-tailed Grackle ( Quiscalus mexicanus ). Scavenging, opportunistic species such as Turkey Vulture ( Cathartes aura ) and Common Raven ( Corvus corax ) also showed strong positive trends. Trends in wintering populations were largely concordant with estimated trends available from breeding areas in California and western North America. Overall, these abundance data suggest that recent efforts to preserve and restore wetland and riparian habitats may be benefiting birds. However, a similar focus on conservation of the Central Valley's remaining grasslands may be needed to maintain populations of grassland-associated birds.
Book chapter↗
Body mass, wing length, and condition of wintering ducks relative to hematozoa infection
Waterfowl managers lack information regarding factors that may be reducing the positive response of waterfowl body condition to habitat improvements. Protozoan blood parasites (i.e., hematozoa) are commonly found in birds and have been related to reduced body mass, wing length, and body condition. We studied relationships between 12 measures of hematozoa infection and body mass, wing length, and body mass divided by wing length (i.e., body condition index [BCI]) of the five most common duck species (northern pintail [ Anas acuta ], mallard [ A. platyrhynchos ], green-winged teal [ A. crecca ], American wigeon [ A. Americana ], northern shoveler [ A. clypeata ]) wintering in the Central Valley of California during October 2006-January 2007. After accounting for variation due to species, age-sex cohort, Central Valley region, and month; wing length, body mass, and BCI were found to be negatively related to infection by Leucocytozoon and by "any hematozoa" but not related to infection by only Plasmodium or Haemoproteus , or coinfections of greater than one genera or parasite haplotype (albeit, few ducks had Plasmodium or Haemoproteus infection or coinfections). Evidence of a negative relationship with infection was stronger for body mass and BCI than for wing length and indicated that the relationships varied among species, age-sex cohorts, regions, and months. Compared to uninfected ducks, hematozoa-infected duck body mass, wing length, and BCI was -1.63% (85% CI = -2.79%- -0.47%), -0.12% (-0.41%- +0.17%), and -1.38% (-2.49%- -0.26%), respectively. Although, seemingly small, the -1.63% difference in body mass represents a large percentage (e.g., 38% for northern pintail) of the observed increase in wintering duck body mass associated with Central Valley habitat improvements. Because infection prevalence and relationship to body condition might change over time due to climate or other factors, tracking hematozoa infection prevalence might be important to inform and accurately assess the effect of conservation programs designed to improve waterfowl body condition.
California↗
Long-term sand supply to Coachella Valley Fringe-toed Lizard Habitat in the Northern Coachella Valley, California
The Coachella Valley fringe-toed lizard ( Uma inornata ) is a federally listed threatened species that inhabits active sand dunes in the vicinity of Palm Springs, California. The Whitewater Floodplain and Willow Hole Reserves provide some of the primary remaining habitat for this species. The sediment-delivery system that creates these active sand dunes consists of fluvial depositional areas fed episodically by ephemeral streams. Finer fluvial sediments (typically sand size and finer) are mobilized in a largely unidirectional wind field associated with strong westerly winds through San Gorgonio Pass. The fluvial depositional areas are primarily associated with floodplains of the Whitewater—San Gorgonio Rivers and Mission Creek—Morongo Wash; other small drainages also contribute fluvial sediment to the eolian system. The eolian dunes are transitory as a result of unidirectional sand movement from the depositional areas, which are recharged with fine-grained sediment only during episodic floods that typically occur during El Niño years. Eolian sand moves primarily from west to east through the study area; the period of maximum eolian activity is April through June. Wind speed varies diurnally, with maximum velocities typically occurring during the afternoon. Development of alluvial fans, alteration of stream channels by channelization, in-stream gravel mining, and construction of infiltration galleries were thought to reduce the amount of fluvial sediment reaching the depositional areas upwind of Uma habitat. Also, the presence of roadways, railroads, and housing developments was thought to disrupt or redirect eolian sand movement. Most of the sediment yield to the fluvial system is generated in higher elevation areas with little or no development, and sediment yield is affected primarily by climatic fluctuations and rural land use, particularly livestock grazing and wildfire. Channelization benefits sediment delivery to the depositional plains upwind of the reserves by minimizing in-channel sediment storage on the alluvial fans. The post-development annual sediment yield to the Whitewater and Mission Creek—Morongo Wash depositional areas are 3.5 and 1.5 million ft 3 /yr, respectively, covering each depositional area to a depth of 0.2 to 0.4 in. Given existing sand-transport rates, this material could be depleted by eolian processes in 8 to 16 months, a rate consistent with the presence of persistent sand dunes. However, these depletion times are likely minimum estimates, as some eolian sand is seen to persist in the immediate vicinity of depositional areas for longer time periods. Transport rates may be reduced by the presence of vegetation and other windbreaks. Because they are perpendicular to prevailing winds, the infiltration galleries on Whitewater River trap fluvial and eolian sediment, reducing sediment availability. Also, the presence of the railroad and Interstate 10 redirect eolian sand movement to the southeast along their corridors,potentially eliminating the Whitewater depositional area as a sand source for the Willow Hole Reserve. Using directional wind data, we discuss the potential for eolian sand transport from the Mission Creek—Morongo Wash depositional area to Willow Hole.
California↗
Habitat Suitability Index Models: Mallard (winter habitat, Lower Mississippi Valley)
A review and synthesis of existing information were used to develop a Habitat Suitability Index (HSI) model for the mallard (Anas platyrhynchos). The model consolidates habitat use information into a framework appropriate for field application, and is scaled to produce an index between 0.0 (unsuitable habitat) to 1.0 (optimum habitat). HSI models are designed to be used with Habitat Evaluation Procedures previously developed by the U.S. Fish and Wildlife Service.
FWS/OBS↗
Depletion of rice as food of waterfowl wintering in the Mississippi Alluvial Valley
Waterfowl habitat conservation strategies in the Mississippi Alluvial Valley (MAV) and several other wintering areas assume carrying capacity is limited by available food, and increasing food resources is an effective conservation goal. Because existing research on winter food abundance and depletion is insufficient to test this hypothesis, we used harvested rice fields as model foraging habitats to determine if waste rice seed is depleted before spring migration. We sampled rice fields ( n = 39 [winter 2000–2001], n = 69 [2001–2002]) to estimate seed mass when waterfowl arrived in late autumn and departed in late winter. We also placed exclosures in subsets of fields in autumn ( n = 8 [2000–2001], n = 20 [2001–2002]) and compared seed mass inside and outside exclosures in late winter to estimate rice depletion attributable to waterfowl and other processes. Finally, we used an experiment to determine if the extent of rice depletion differed among fields of varying initial abundance and if the seed mass at which waterfowl ceased foraging or abandoned fields differed from a hypothesized giving-up value of 50 kg/ha. Mean seed mass was greater in late autumn 2000 than 2001 (127.0 vs. 83.9 kg/ha; P = 0.018) but decreased more during winter 2000–2001 than 2001–2002 (91.3 vs. 55.7 kg/ha) and did not differ at the end of winter (35.8 vs. 28.3 kg/ha; P = 0.651). Assuming equal loss to deterioration inside and outside exclosures, we estimated waterfowl consumed 61.3 kg/ha (48.3%) of rice present in late autumn 2000 and 21.1 kg/ha (25.1%) in 2001. When we manipulated late-autumn rice abundance, mean giving-up mass of rice seed was similar among treatments (48.7 kg/ha; P = 0.205) and did not differ from 50 kg/ha ( P = 0.726). We integrated results by constructing scenarios in which waterfowl consumed rice at different times in winter, consumption and deterioration were competing risks, and consumption occurred only above 50 kg/ha. Results indicated waterfowl likely consumed available rice soon after fields were flooded and the amount consumed exceeded our empirical estimates but was ≤48% (winters pooled) of rice initially present. We suggest 1) using 50 kg/ha as a threshold below which profitability limits waterfowl feeding in MAV rice fields; 2) reducing the current estimate (130 kg/ha) of rice consumed in harvested fields to 47.2 kg/ha; and 3) increasing available rice by increasing total area of fields managed, altering management practices (e.g., staggered flooding), and exploring the potential for producing second or ratoon rice crops for waterfowl.
Arkansas;Illinois;Kentucky;Louisiana;Mississippi;M↗
Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios
California's Central Valley provides critical, but threatened habitat and food resources for migrating and wintering waterfowl, shorebirds, and other waterbirds. The Central Valley is comprised of nine basins that were defined by the Central Valley Joint Venture (CVJV) to assist in conservation planning. Basins vary in composition and extent of habitats, which primarily include croplands and wetlands that rely on water supplies shared with other competing human and environmental uses. Changes in climate, urban development, and water supply management are uncertain and could reduce future availability of water supplies supporting waterbird habitats and limit effectiveness of wetland restoration planned by the CVJV to support wintering waterbirds. We modeled 17 plausible scenarios including combinations of three climate projections, three urbanization rates, and five water supply management options to promote agricultural and urban water uses, with and without wetland restoration. Our research examines the reduction in quantity and quality of habitats during the fall migration-wintering period by basin under each scenario, and the efficacy of planned wetland restoration to compensate reductions in flooded areas of wetland habitats. Scenario combinations of projected climate, urbanization, and water supply management options reduced availability of flooded cropland and wetland habitats during fall-winter and degraded the quality of seasonal wetlands (i.e., summer-irrigation for improved forage production), though the extent and frequency of impacts varied by basin. Planned wetland restoration may substantially compensate for scenario-related effects on wetland habitats in each basin. However, results indicate that Colusa, Butte, Sutter, San Joaquin, and Tulare Basins may require additional conservation to support summer-irrigation of seasonal wetlands and winter-flooding of cropland habitats. Still further conservation may be required to provide sufficient areas of flooded seasonal and semi-permanent wetlands in San Joaquin and Tulare Basins during fall-winter. The main objective of this research is to provide decision-support for achieving waterbird conservation goals in the valley and to inform CVJV's regional conservation planning.
California↗
Projected impacts of climate, urbanization, water management, and wetland restoration on waterbird habitat in California’s Central Valley
The Central Valley of California is one of the most important regions for wintering waterbirds in North America despite extensive anthropogenic landscape modification and decline of historical wetlands there. Like many other mediterranean-climate ecosystems across the globe, the Central Valley has been subject to a burgeoning human population and expansion and intensification of agricultural and urban development that have impacted wildlife habitats. Future effects of urban development, changes in water supply management, and precipitation and air temperature related to global climate change on area of waterbird habitat in the Central Valley are uncertain, yet potentially substantial. Therefore, we modeled area of waterbird habitats for 17 climate, urbanization, water supply management, and wetland restoration scenarios for years 2006–2099 using a water resources and scenario modeling framework. Planned wetland restoration largely compensated for adverse effects of climate, urbanization, and water supply management changes on habitat areas through 2065, but fell short thereafter for all except one scenario. Projected habitat reductions due to climate models were more frequent and greater than under the recent historical climate and their magnitude increased through time. After 2065, area of waterbird habitat in all scenarios that included severe warmer, drier climate was projected to be >15% less than in the “existing” landscape most years. The greatest reduction in waterbird habitat occurred in scenarios that combined warmer, drier climate and plausible water supply management options affecting priority and delivery of water available for waterbird habitats. This scenario modeling addresses the complexity and uncertainties in the Central Valley landscape, use and management of related water supplies, and climate to inform waterbird habitat conservation and other resource management planning. Results indicate that increased wetland restoration and additional conservation and climate change adaptation strategies may be warranted to maintain habitat adequate to support waterbirds in the Central Valley.
California↗
Climate and land change impacts on future managed wetland habitat: A case study from California’s Central Valley
Concept California’s Central Valley provides critical habitat for migratory waterbirds, yet only 10% of naturally occurring wetlands remain. Competition for limited water supplies and climate change will impact the long-term viability of these intensively managed habitats. Objectives Forecast the distribution, abundance, and connectivity of surface water and managed wetland habitats, using 5 spatially explicit (270 m 2 ) climate/land use/water prioritization scenarios. Mapping potential future dynamic flooded habitat used by waterbirds and other wetland-dependent wildlife to inform management decisions. Methods We integrated a climate-driven hydrologic water use model with a spatially explicit land change model, to examine stakeholder-driven scenarios of future land change, climate, and water use and their impacts on future habitat availability. Results Declining water availability is the dominant driver of habitat loss across scenarios. The hot/dry scenarios showed the greatest declines in January flooded area by 2101—an important month for overwintering waterbirds. In contrast, higher water supplies in wet climates drive perennial cropland conversion and loss of potential habitat. Potential flooded cropland declined (25 and 33%) under warmer/wetter climate conditions due to this conversion to perennial crops, exposing habitat vulnerability. Conclusion Climate-driven loss of water availability had a greater impact on flooded habitat availability than land-use change. When combined, climate change and the conversion of potentially flooded cropland to perennial cropland will threaten future waterbird habitat particularly in January, the peak of the migratory bird season, even when habitat restoration goals are met. Stakeholder-informed scenario analysis can identify target areas for potential habitat change, vulnerability, and conservation.
California↗
Mississippi Alluvial Valley Forest-breeding landbird population & quantitative habitat objectives
The Mississippi Alluvial Valley (MAV) is a 9 million ha (22-million-acre) floodplain that supports a diverse and ecologically rich bottomland hardwood forest ecosystem – one of the most productive in North America. It extends from roughly Cape Girardeau, Missouri, to the Gulf of Mexico and features a mosaic of ridges, swales, meander belts, and backswamps. Small changes in elevation (<1 foot) in the MAV are associated with large shifts in hydrology, which in turn, strongly affect plant and animal community composition and structure. The resultant diversity contributes to a fertile and productive floodplain. General forest types in the MAV include: Oak-gum-cypress (41%), elm-ash-cottonwood (29%), oakhickory (17%), and the remainder is other forest types (Oswalt 2013). Within the oak-gum-cypress and elm-ash-cottonwood categories, sugarberry-hackberry-elm-green ash and sweetgum-Nuttall oak-willow oak forest types account for close to one-half of MAV bottomland forest acreage, while baldcypress-tupelo forests are about 16 percent (Oswalt 2013). Although we emphasize bottomland hardwood habitat and associated bird species, this planning effort includes analyses based upon all forest types within the MAV. Hence, the term ‘forest’ refers to all forest types in the MAV.
Arkansas, Kentucky, Louisiana, Mississippi, Missou↗
Dynamics of wintering waterfowl habitats in the Sacramento Valley and Sacramento-San Joaquin river delta, 1989-1990. Progress report
No abstract available at this time
Report↗
Sampling across 20 years (1996–2017) reveals loss of diversity and genetic connectivity in the Coachella Valley fringe-toed lizard ( Uma inornata )
The Coachella Valley fringe-toed lizard ( Uma inornata ) is a federally threatened, aeolian sand dune obligate, endemic to the Coachella Valley, California. Historically, U. inornata is thought to have formed a large interconnected metapopulation across the valley, with local dune habitat and population size fluctuations linked to stochastic droughts and flooding. Since the 1950s, aeolian habitat in Coachella Valley has declined by 91–95 percent. What remains is highly fragmented by highways and development in the urban communities of the Coachella Valley, raising concerns that fringe-toed lizard movement and gene flow among remaining habitat fragments is limited or nonexistent. We examined population genetic structure across three sample periods (1996, 2008, and 2017). Over that time, this species has shifted from a panmictic condition (1996) with little or no genetic structure between sites to the current (2017) condition where there are now genetically distinct populations. Two severe droughts (2000–04 and 2012–16) may have accelerated this shift through drought-related population declines and subsequent genetic bottlenecks. Using a combination of microsatellite loci and single nucleotide polymorphisms, we found patterns of decreasing genetic connectivity and diversity over time. These patterns are consistent with reduced fringe-toed lizard movement and gene flow among isolated sand dune systems. Low effective population sizes were recovered in some sites, suggesting genetic drift in smaller and fluctuating populations is likely responsible for loss of genetic diversity. A U.S. Fish and Wildlife Service recovery objective for this species is to maintain genetic diversity; however, evidence of fragmentation suggests that genetic cohesiveness has been altered and that the diversity maintained in individual fragments is lower than in the total metapopulation. Management actions that increase genetic diversity could be implemented, including translocation. We modeled increasing gene flow between 1–10 percent, which showed that allelic richness could increase rapidly if translocated individuals can survive and reproduce. Establishing translocation protocols could help to avoid the high mortality that has occurred with other reptile translocations. Successful translocations could be a useful strategy to replenish lost genetic diversity after bottlenecks and could mitigate the loss of natural gene flow among populations.
California↗
Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada
Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedace were known to exist only within this drainage and were known to have been extirpated from a portion of their former habitat located downstream of Condor Canyon. Because of this extirpation and the limited distribution of Big Spring spinedace, the U.S. Fish and Wildlife Service listed this species as threatened under the Endangered Species Act in 1985. Prior to our effort, little was known about Big Spring spinedace populations or life histories and habitat associations. In 2008, personnel from the U.S. Geological Survey's Columbia River Research Laboratory began surveys of Meadow Valley Wash in Condor Canyon. Habitat surveys characterized numerous variables within 13 reaches, thermologgers were deployed at 9 locations to record water temperatures, and fish populations were surveyed at 22 individual sites. Additionally, fish were tagged with Passive Integrated Transponder (PIT) tags, which allowed movement and growth information to be collected on individual fish. The movements of tagged fish were monitored with a combination of recapture events and stationary in-stream antennas, which detected tagged fish. Meadow Valley Wash within Condor Canyon was divided by a 12-meter (m) waterfall known as Delmue Falls. About 6,100 m of stream were surveyed downstream of the falls and about 2,200 m of stream were surveyed upstream of the falls. Although about three-quarters of the surveyed stream length was downstream of Delmue Falls, the highest densities and abundance of native fish were upstream of the falls. Big Spring spinedace and desert sucker populations were highest near the upper end of Condor Canyon, where a tributary known as Kill Wash, and several springs, contribute flow and moderate high and low water temperature. Kill Wash and the area around its confluence with Meadow Valley Wash appeared important for spawning of all three native species. Detections of PIT-tagged fish indicated that there were substantial movements to this area during the spring. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. A population of non-native rainbow trout (Oncorhynchus mykiss) was found within the 2,000 m of stream immediately downstream of Delmue Falls. Non-native crayfish were very common both upstream and downstream of Delmue Falls. We were not able to quantify crayfish populations, but they compose a significant portion of the biomass of aquatic species in Condor Canyon. There were some distinctive habitat features that may have favored native fish upstream of Delmue Falls. Upstream of the falls, water temperatures were moderated by inputs from springs, turbidity was lower, pool habitat was more prevalent, substrate heterogeneity was higher, and there was less fine sediment than
Open-File Report↗
Modeling waterfowl habitat selection in the Central Valley of California to better understand the spatial relationship between commercial poultry and waterfowl
Wildlife researchers frequently study resource and habitat selection of wildlife to understand their potential habitat requirements and to conserve their populations. Understanding wildlife spatial-temporal distributions related to habitat have other applications such as to model interfaces between wildlife and domestic food animals in order to mitigate disease transmission to food animals. The highly pathogenic avian influenza (HPAI) virus represents a significant risk to the poultry industry. The Central Valley of California offers a unique geographical confluence of commercial poultry and wild waterfowl, which are thought to be a key reservoir of avian influenza (AI). Therefore, understanding spatio-temporal distributions of waterfowl could improve our understanding of potential risk of HPAI exposure from a commercial poultry perspective. Using existing radio-telemetry data on waterfowl (U.S. Geological Survey) in combination with habitat and vegetation data based on Geographic Information Systems (GIS), we are developing GIS-based statistical models that predict the probability of waterfowl presence (Habitat Suitability Mapping). Near-real-time application can be developed using recent habitat data derived from Landsat imagery (acquired by satellites and publicly available through the U.S. Geological Survey) to predict temporally- and spatially-varying distributions of waterfowl in the Central Valley. These results could be used to provide decision support for the poultry industry in addressing potential risk of HPAI exposure related to waterfowl proximity.
California↗
Digital Map of Surficial Geology, Wetlands, and Deepwater Habitats, Coeur d'Alene River Valley, Idaho
The Coeur d'Alene (CdA) River channel and its floodplain in north Idaho are mostly covered by metal-enriched sediments, partially derived from upstream mining, milling and smelting wastes. Relative to uncontaminated sediments of the region, metal-enriched sediments are highly enriched in silver, lead, zinc, arsenic, antimony and mercury, copper, cadmium, manganese, and iron. Widespread distribution of metal-enriched sediments has resulted from over a century of mining in the CdA mining district (upstream), poor mine-waste containment practices during the first 80 years of mining, and an ongoing series of over-bank floods. Previously deposited metal-enriched sediments continue to be eroded and transported down-valley and onto the floodplain during floods. The centerpiece of this report is a Digital Map Surficial Geology, Wetlands and Deepwater Habitats of the Coeur d'Alene (CdA) River valley (sheets 1 and 2). The map covers the river, its floodplain, and adjacent hills, from the confluence of the North and South Forks of the CdA River to its mouth and delta front on CdA Lake, 43 linear km (26 mi) to the southwest (river distance 58 km or 36 mi). Also included are the following derivative theme maps: 1. Wetland System Map; 2. Wetland Class Map; 3. Wetland Subclass Map; 4. Floodplain Map; 5. Water Regime Map; 6. Sediment-Type Map; 7. Redox Map; 8. pH Map; and 9. Agricultural Land Map. The CdA River is braided and has a cobble-gravel bottom from the confluence to Cataldo Flats, 8 linear km (5 mi) down-valley. Erosional remnants of up to four alluvial terraces are present locally, and all are within the floodplain, as defined by the area flooded in February of 1996. High-water (overflow) channels and partly filled channel scars braid across some alluvial terraces, toward down-valley marshes and (or) oxbow ponds, which drain back to the river. Near Cataldo Flats, the river gradient flattens, and the river coalesces into a single channel with a large friction-dominated central sand bar at Cataldo Landing. Metal-enriched sediments that were dredged from the central sand bar were deposited on Cataldo Flats, to form extensive dredge-spoil deposits. From the central sand bar to CdA Lake, thick deposits of metal-enriched sand partially fill the middle of the pre-mining-era channel along straight reaches, and form point-bars along the inside margins of meander bends. Metal-enriched sand and silt form oxidized bank-wedge deposits along riverside margins of pre-mining-era levees of gray silty mud. Metal-enriched levee sand deposits extend across bank wedges and natural levees, generally thinning and fining away from the river, toward lateral marshes and lakes, where dark gray metal-enriched silt and mud overlie silty peat, deposited before the mining era. Distributary streams and man-made canals locally diverge from the river, connecting it to lateral marshes and lakes, and metal-enriched sand splays locally fan out across the floodplain. At the mouth of the river, a bouyancy-dominated river-mouth bar crests beyond the ends of the emergent levees. Thick delta-front deposits of metal-enriched sand slope from the river-mouth bar to the bottom of CdA Lake.
Open-File Report↗