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A survey of fungi associated with lesioned and chlorotic sago pondweed (Potamogeton pectinatus)

Isolations from 1000 Potamogeton pectinatus plants collected from six major stands in Back Bay, Virginia and 13 in Currituck Sound, North Carolina yielded Pythium spp. consistently and in relatively high frequency. Although specific determination of these isolates was unsuccessful, they were separated into three groups according to morphological and cultural characteristics. Rhizoctonia solani Kuehn was isolated in rare instances. In inoculation studies, isolates of R. solani were pathogenic to P. pectinatus , whereas inoculations with Pythium spp. proved inconclusive, even though one group of isolates exhibited pathogenic tendencies.

Plant Disease Reporter

LANDFIRE 2001 and 2008 refresh: geographic area report: Alaska

The LANDFIRE National Project (LF_1.0.0) was successfully completed in 2009. The goal of LANDFIRE National was to generate consistent 2001 vintage 30 meter spatial data sets for all 50 States for fire and other natural resource applications. This report highlights results from the continuation of LANDFIRE as a program to update the spatial data layers through 2008. The focus of this phase of the program was to improve the data products and account for vegetation change across the landscape caused by wildland fire, fuel and vegetation treatments, and management. In addition, changes caused by insects and disease, storms, invasive plants, and other natural or anthropogenic events were incorporated when data were available. This report describes the LANDFIRE 2001/2008 Refresh effort to update existing map layers to reflect more current conditions, focusing primarily on vegetation changes. The effort incorporated user feedback and new data, producing two comprehensive Refresh data product sets: 1. LANDFIRE 2001 Refresh (LF_1.0.5) enhanced LANDFIRE map layers by incorporating user feedback and additional data to provide a foundation to update data to 2008. It was also designed to provide users with a data set to help facilitate comparisons between 2001 and 2008 (i.e. Refresh LF_1.1.0) data sets. 2. LANDFIRE 2008 Refresh (LF_1.1.0) updated map layers to reflect vegetation changes and disturbances that occurred between 1999 and 2008. In this report, we (1) address the background and provide details pertaining to why there are two Refresh data sets, (2) explain the requirements, planning, and procedures behind the completion and delivery of the updated products for each of the data product sets, (3) show and describe results, and (4) provide case studies illustrating the performance of LANDFIRE National, LANDFIRE 2001 Refresh and LANDFIRE 2008 Refresh (LF_1.1.0) data products on some example wildland fires.

Report

LANDFIRE 2001 and 2008 Refresh Geographic Area Report--Pacific Southwest

The LANDFIRE National project (LF_1.0.0) was successfully completed in 2009. The goal of LANDFIRE National was to generate consistent 2001 vintage 30 meter spatial data sets for all 50 states for fire and other natural resource applications. This report highlights results from the continuation of LANDFIRE as a program to update the spatial data layers through 2008. The focus of this phase of the program was to improve the data products and account for vegetation change across the landscape caused by wildland fire, fuel and vegetation treatments, and (or) management. In addition, changes caused by insects and disease, storms, invasive plants, and other natural or anthropogenic events were incorporated when appropriate data were available. This report describes the LANDFIRE 2001/2008 Refresh effort to update existing map layers to reflect more current conditions, focusing primarily on vegetation changes. The effort incorporated user feedback and new data, producing two comprehensive Refresh data product sets: 1. LANDFIRE 2001 Refresh (LF_1.0.5) enhanced LANDFIRE map layers by incorporating user feedback and additional data to provide a foundation to update data to 2008. It was also designed to provide users with a data set to help facilitate comparisons between 2001 and 2008 (i.e. Refresh LF_1.1.0) data sets. 2. LANDFIRE 2008 Refresh (LF_1.1.0) updated map layers to reflect vegetation changes and disturbances that occurred between 1999 and 2008. In this report, we (1) address the background and provide details pertaining to why there are two Refresh data sets, (2) explain the requirements, planning, and procedures behind the completion and delivery of the updated products for each of the data product sets, (3) show and describe results, and (4) provide case studies illustrating the performance of LANDFIRE National, LANDFIRE 2001 Refresh and LANDFIRE 2008 Refresh (LF_1.1.0) data products on some example wildland fires.

Report

The elusive baseline of marine disease: Are diseases in ocean ecosystems increasing?

Disease outbreaks alter the structure and function of marine ecosystems, directly affecting vertebrates (mammals, turtles, fish), invertebrates (corals, crustaceans, echinoderms), and plants (seagrasses). Previous studies suggest a recent increase in marine disease. However, lack of baseline data in most communities prevents a direct test of this hypothesis. We developed a proxy to evaluate a prediction of the increasing disease hypothesis: the proportion of scientific publications reporting disease increased in recent decades. This represents, to our knowledge, the first quantitative use of normalized trends in the literature to investigate an ecological hypothesis. We searched a literature database for reports of parasites and disease (hereafter “disease”) in nine marine taxonomic groups from 1970 to 2001. Reports, normalized for research effort, increased in turtles, corals, mammals, urchins, and molluscs. No significant trends were detected for seagrasses, decapods, or sharks/rays (though disease occurred in these groups). Counter to the prediction, disease reports decreased in fishes. Formulating effective resource management policy requires understanding the basis and timing of marine disease events. Why disease outbreaks increased in some groups but not in others should be a priority for future investigation. The increase in several groups lends urgency to understanding disease dynamics, particularly since few viable options currently exist to mitigate disease in the oceans.

PLoS Biology

Multistage time-to-event models improve survival inference by partitioning mortality processes of tracked organisms

Advances in tagging technologies are expanding opportunities to estimate survival of fish and wildlife populations. Yet, capture and handling effects could impact survival outcomes and bias inference about natural mortality processes. We developed a multistage time-to-event model that can partition the survival process into sequential phases that reflect the tagged animal experience, including handling and release mortality, post-release recovery mortality, and subsequently, natural mortality. We demonstrate performance of multistage survival models through simulation testing and through fish and bird telemetry case studies. Models are implemented in a Bayesian framework and can accommodate left, right, and interval censorship events. Our results indicate that accurate survival estimates can be achieved with reasonable sample sizes ( n ≈ 100 + ) "> 𝑛≈100+) and that multimodel inference can inform hypotheses about the configuration and length of survival stages needed to adequately describe mortality processes for tracked specimens. While we focus on survival estimation for tagged fish and wildlife populations, multistage time-to-event models could be used to understand other phenomena of interest such as migration, reproduction, or disease events across a range of taxa including plants and insects.

Scientific Reports

Potash—A vital agricultural nutrient sourced from geologic deposits

This report summarizes the primary sources of potash in the United States. Potash is an essential nutrient that, along with phosphorus and nitrogen, is used as fertilizer for growing crops. Plants require sufficient potash to activate enzymes, which in turn catalyze chemical reactions important for water uptake and photosynthesis. When potassium is available in quantities necessary for healthy plant growth, disease resistance and physical quality are improved and crop yield and shelf life are increased. Potash is a water-soluble compound of potassium formed by geologic and hydrologic processes. The principal potash sources discussed are the large, stratiform deposits that formed during retreat and evaporation of intracontinental seas. The Paradox, Delaware, Holbrook, Michigan, and Williston sedimentary basins in the United States are examples where extensive potash beds were deposited. Ancient marine-type potash deposits that are close to the surface can be mined using conventional underground mining methods. In situ solution mining can be used where beds are too deep, making underground mining cost-prohibitive, or where underground mines are converted to in situ solution mines. Quaternary brine is another source of potash that is recovered by solar evaporation in manmade ponds. Groundwater from Pleistocene Lake Bonneville (Wendover, Utah) and the present-day Great Salt Lake in Utah are sources of potashbearing brine. Brine from these sources pumped to solar ponds is evaporated and potash concentrated for harvesting, processing, and refinement. Although there is sufficient potash to meet near-term demand, the large marine-type deposits are either geographically restricted to a few areas or are too deep to easily mine. Other regions lack sources of potash brine from groundwater or surface water. Thus, some areas of the world rely heavily on potash imports. Political, economic, and global population pressures may limit the ability of some countries from securing potash resources in the future. In this context, a historical perspective on U.S. potash production in a global framework is discussed.

Open-File Report

Sonoran Desert: Fragile Land of Extremes

'Sonoran Desert: Fragile Land of Extremes' shows how biologists with the U.S. Geological Survey work with other scientists in an effort to better understand native plants and animals such as desert tortoises, saguaro cacti, and Gila monsters. Much of the program was shot in and around Saguaro National Park near Tucson, Arizona. Genetic detective work, using DNA, focuses on understanding the lives of tortoises. Studies of saguaros over many decades clarify how these amazing plants reproduce and thrive in the desert. Threats from fire, diseases in tortoises, and a growing human population motivate the scientists. Their work to identify how these organisms live and survive is a crucial step for the sound management of biological resources on public lands. This 28-minute program, USGS Open-File Report 03-305, was shot entirely in high definition video and produced by the USGS Western Ecological Research Center and Southwest Biological Science Center; produced and directed by Stephen Wessells, Western Region Office of Communications.

Open-File Report

Screening and biosecurity for White-nose Fungus Pseudogymnoascus destructans (Ascomycota: Pseudeurotiaceae) in Hawai‘i

Introduced pathogens causing emerging infectious diseases (EIDs) are serious contemporary threats to animal, plant, and ecosystem health. The invasive fungus, Pseudogymnoascus destructans , has established populations of European origin in North America, resulting in mass mortality of several hibernating bat species. Extensive monitoring for this pathogen exists in Europe and North America, but limited screening is taking place elsewhere. We report results from cave surveys on Hawai‘i Island. Substrates in 10 lava-tube caves with elevations up to 3,045 m were swabbed providing samples for screening P. destructans . Interior cave air temperatures spanned temperatures suitable for the growth and survival of P. destructans . Using quantitative PCR, all 85 samples tested were negative for the presence of P. destructans . The biology of the Hawaiian hoary bat ( Lasiurus cinereus semotus ) in relation to its unusual use of high elevation caves is discussed because these bats could come into contact with P. destructans should it arrive in Hawai‘i. Large numbers of cave enthusiasts visit Hawaiian caves from across the world after having been inside caves elsewhere including areas with P. destructans . Thus, resource managers in Hawai‘i and other remote areas may want to consider the potential for P. destructans to arrive unintentionally via human activities. Biosecurity measures and periodic screening for P. destructans are especially important in Hawai‘i given the presence of high elevation caves with suitable temperatures for its growth. If P. destructans was introduced to Hawaiian caves, it could affect the local fauna but also act as a source population for colonisations elsewhere.

Hawaii

Climate change and wildlife health: direct and indirect effects

Climate change will have significant effects on the health of wildlife, domestic animals, and humans, according to scientists. The Intergovernmental Panel on Climate Change projects that unprecedented rates of climate change will result in increasing average global temperatures; rising sea levels; changing global precipitation patterns, including increasing amounts and variability; and increasing midcontinental summer drought (Intergovernmental Panel on Climate Change, 2007). Increasing temperatures, combined with changes in rainfall and humidity, may have significant impacts on wildlife, domestic animal, and human health and diseases. When combined with expanding human populations, these changes could increase demand on limited water resources, lead to more habitat destruction, and provide yet more opportunities for infectious diseases to cross from one species to another. Awareness has been growing in recent years about zoonotic diseases— that is, diseases that are transmissible between animals and humans, such as Lyme disease and West Nile virus. The rise of such diseases results from closer relationships among wildlife, domestic animals, and people, allowing more contact with diseased animals, organisms that carry and transmit a disease from one animal to another (vectors), and people. Disease vectors include insects, such as mosquitoes, and arachnids, such as ticks. Thus, it is impossible to separate the effects of global warming on wildlife from its effects on the health of domestic animals or people. Climate change, habitat destruction and urbanization, the introduction of exotic and invasive species, and pollution—all affect ecosystem and human health. Climate change can also be viewed within the context of other physical and climate cycles, such as the El Niño Southern Oscillation (El Niño), the North Atlantic Oscillation, and cycles in solar radiation that have profound effects on the Earth’s climate. The effects of climate change on wildlife disease are summarized in several areas of scientific study discussed briefly below: geographic range and distribution of wildlife diseases, plant and animal phenology (Walther and others, 2002), and patterns of wildlife disease, community and ecosystem composition, and habitat degradation.

Fact Sheet

A baseline analysis of the distribution, host-range, and severity of the rust Puccinia Psidii in the Hawaiian islands, 2005-2010

Puccinia psidii was first described by Winter (1884) on guava ( Psidium guajava L.) in Brazil. The rust is still a major pest of native guava in Brazil and is often referred to as “guava rust” internationally. It is unusual among rust fungi because of its broad and ever-expanding host-range within the Myrtaceae plant family (Simpson et al . 2006). The pathogen is regarded as a major threat to Eucalyptus plantations and other Myrtaceae worldwide (Coutinho et al . 1998, Grgurinovic et al . 2006, Glen et al . 2007). Infections of leaves and meristems are particularly severe on susceptible seedlings, cuttings, young trees, and coppice, causing plants to be stunted and multi-branched, inhibiting normal growth and development, and sometimes causing death to young seedlings (Booth et al . 2000, Rayachhetry et al . 2001). The fungus has expanded its host-range in Brazil, affecting both native and introduced Myrtaceae (Coutinho et al . 1998). Since its discovery in 1884, P. psidii has continually been discovered to have an expanding host-range within the Myrtaceae, affecting hosts throughout much of South and Central America and the Caribbean. Spreading out originally from Brazil in 1884, the fungus has been reported on hosts in the following countries (first record in parentheses): Paraguay (1884), Uruguay (1889), Ecuador (1891), Colombia (1913), Puerto Rico (1913), Cuba (1926), Dominican Republic (1933), Venezuela (1934), Jamaica (1936), Argentina (1946), Dominica (1948), Trinidad and Tobago (1951), Guatemala (1968), United States (Florida; 1977), Mexico (1981), El Salvador (1987), and Costa Rica (1998) (Simpson et al . 2006). It is possible that P. psidii was present in El Salvador and Costa Rica prior to 1980, but was not reported until 1987 and 1998, respectively. Until recently, Puccinia psidii was restricted to the Neotropics, Mexico, and the state of Florida in the United States. While the rust has been present in Florida for over 30 years, only recently has it spread westward. Although possibly present earlier, P. psidii was found in California in November 2005 in a nursery in San Diego County on Myrtus communis and documented by a report in a nursery newsletter (Mellano 2006). Puccinia psidii was first found in Hawai`i on a young plant of `ōhi`a ( Metrosideros polymorpha ) in April 2005, in a nursery on the island of O`ahu (Killgore and Heu 2005; Uchida et al . 2006). The fungus subsequently spread to most islands of the Hawaiian chain, infecting `ōhi`a and other myrtaceous hosts (Hauff 2006, Anderson et al . 2007). P. psidii was first found in Japan in May 2007 on cultivated `ōhi`a (Kawanishi et al . 2009). Most recently, a rust identified as Uredo rangelii was discovered in April 2010 in New South Wales, Australia (Carnegie et al . 2010). This rust is closely related to Puccinia psidii and is part of the guava rust complex described by Simpson et al . (2006). Although treated as a separate species by Simpson et al. (2006), many authors now consider U. rangelii a synonym for U. psidii , which is the anamorph (asexual stage) of P. psidii , and therefore, the same species (Glen et al . 2007, Carnegie et al . 2010). Because of the large diversity of native Myrtaceae present in Australia, the number of Myrtaceae hosts attacked by species of the guava rust complex will likely grow now that U. rangelii has arrived and is spreading in the country. As of this writing (June 2011), 94 species of Myrtaceae have been identified as hosts of U. rangelii in the states of New South Wales and Queensland. Damage is severe on nearly one-third of the species affected, and 16 of these species are threatened or endangered native species (Secretary of Australia, May 2011). The presence of Puccinia psidii in Hawai`i is particularly alarming for at least two reasons: (1) M. polymorpha is the dominant overstory tree of the native forest, and (2) P. psidii is now established in the Pacific region, where numerous Myrtaceae species are native. Native ecosystems in Hawai`i and the Pacific could be seriously affected by the spread of P. psidii , as both native and introduced Myrtaceae are significant components of many different plant communities throughout the region (Glen et al. 2007). Because the guava rust complex (i.e., P. psidii and U. rangelii ) now attacks well over 100 species of Myrtaceae worldwide, it is currently a priority for international quarantine and import restrictions in an effort to prevent further spread among Australasian and Pacific Myrtaceae. Several different studies have been done to determine what degree of genetic variation exists between isolates of Puccinia psidii from many different host plants and many different locations (Langrell et al . 2008, Kawanishi et al . 2009, Kadooka 2010, Graça et al . 2011). So far, all of these studies have shown that all of the Hawaiian samples tested so far have had the same genetic composition. Given that the P. psidii strain in Hawai`i has continually been shown for over five years to lack genetic variation at microsatellite marker sites (which are believed to undergo relatively rapid genetic change), a baseline evaluation of incidence and severity should be especially valuable to provide comparisons with future conditions. Worldwide, 23 Neotropical species in 11 genera and 59 Australasian and Pacific species in 13 genera had been recorded as hosts of Puccinia psidii before 2010 (Simpson et al . 2006, Anderson et al . 2007). Of those 82 species known to be hosts elsewhere, 42 are cultivated or naturalized in Hawai`i. Because of its wide host-range and aggressive pathogenicity, rust disease caused by P. psidii poses a considerable disease threat to many native and cultivated Myrtaceae throughout the world (Coutinho et al . 1998, Booth et al . 2000, Simpson et al . 2006). However, there are few reports comparing the severity of rust infection on native, introduced, and cultivated Myrtaceae (Rayachhetry et al . 2001, Perez et al . 2010). Since government agencies and the public are concerned about the extent of the rust movement within and to Hawai`i (Loope and La Rosa 2008, Loope 2010), there is a need to better understand the incidence, severity, and distribution of P. psidii in Hawai`i. To address that need, this research project was initiated to survey forests, surrounding plant communities, botanical gardens, and commercial nurseries to detect the presence and severity of P. psidii rust infections throughout Hawai`i on plants in the Myrtaceae family. This study provides a baseline on the host distribution and severity to compare current and future impacts of rust infections caused by P. psidii on native, naturalized, and cultivated Myrtaceae in Hawai`i.

Hawai'i

Aquatic invasive species in the Chesapeake Bay drainage—Research-based needs and priorities of U.S. Geological Survey partners and collaborators

Executive Summary The U.S. Geological Survey (USGS) is revising the Chesapeake Bay-based science plan to align it with recent U.S. Department of Interior and USGS science priorities that include, as stated in the plan, providing “an integrated understanding of the factors affecting fish habitat, fish health, and landscape conditions” in Chesapeake Bay and its watershed. A report of partner agencies’ needs and priorities related to aquatic invasive species (AIS) science was identified as an informational gap; a report would help to further development of the science program related to aquatic animal health and habitat. This objective was addressed through review of pertinent documentation and conversations with representatives of State, Federal, and regional agencies with vested interests in AIS management in Chesapeake Bay and the Chesapeake Bay drainage area, and this document was produced to summarize the related findings. All agencies and organizations (13) reported that AIS are of general concern, with most stakeholder groups reporting AIS-related issues to be of high priority, including invasive fishes and invertebrates, invasive plants, and microbes including aquatic animal pathogens. Invasive fishes are of great concern to all partner agencies. Channa argus (northern snakehead) and Ictalurus furcatus (blue catfish) are high priority and represent the two most named AIS of concern for these agencies. Nine of 10 stakeholder groups listed northern snakehead as a high priority species, and 6 listed blue catfish as a high priority species as well. Pylodictis olivaris (flathead catfish), invasive crayfish species , and dressenid mussels were also prioritized by multiple partner groups, each receiving specific mention by at least 3 of the 10 stakeholder groups in discussions or documents. Invasive carp, such as Hypophthalmichthys molatrix (silver carp), also received mention by multiple agencies (3 of the 10 stakeholder groups) because these fish represent priority AIS in nearby watersheds and a threat for introduction and dissemination within the Chesapeake Bay watershed from these neighboring regions. Invasive plants are among priority species, and Hydrilla verticillata (hydrilla) topped the list. Hydrilla was reported as a priority species by 5 of the stakeholder groups queried. Trapa natans and T. bispinosa (water chestnut), Phragmites australis (common reed), and Lythrum salicaria (purple loosestrife) were also among the aquatic invasive plants that were prioritized by multiple partner agencies. Multiple stakeholder groups (5 of the 10 groups) also considered Didymosphenia geminata (didymo) and various aquatic animal pathogens among their priority AIS for management considerations. Science needs that were recurrently indicated by stakeholders to support management of invasive species include Technology to enhance biosurveillance capability, such as reliable environmental DNA based detection methodology; Risk assessment modeling to forewarn of and prioritize AIS-related threats; Increased information and intervention methods related to vectors and pathways of AIS introductions; Increased information about the biology and life history of AIS, including information related to trophic interactions, health and disease, and distribution and abundance; and Potential applications of mitigation strategies, including genetically based biocontrol mechanisms. Potential next steps to address the science needs include Development of biosurveillance and risk assessment tools for identification of AIS in proactive management; Development of proactive management techniques to prevent AIS introductions through recognized vectors and pathways; Development of interagency biosurveillance programs to best utilize personnel, funds, and other resources among interested agencies and organizations; Investigations to address life history, consequences, and movement/dissemination of top priority invasive species in the region; Investigations to determine the potential for novel mitigation technologies, such as the application of synthetic biological (genetic) control methods; and Investigations with focus on emerging and high priority AIS in the region, including fishes (blue catfish, flathead catfish, northern snakehead), invertebrates (invasive crayfish and mollusks) and plants (hydrilla, water chestnut, phragmites).

Virginia, Maryland, Delaware, West Virginia, Penns

Threats posed by the Fungal Kingdom to humans, wildlife, and agriculture

The Fungal Kingdom includes at least six million eukaryotic species and is remarkable with respect to its profound impact on global health, biodiversity, ecology, agriculture, manufacturing, and biomedical research. Approximately 625 fungal species have been reported to infect vertebrates, 200 of which can be human-associated, either as commensals and members of our microbiome or as pathogens that cause infectious diseases. These organisms pose a growing threat to human health with the global increase in the incidence of invasive fungal infections, prevalence of fungal allergy, and the evolution of fungal pathogens resistant to some or all current classes of antifungals. More broadly, there has been an unprecedented and worldwide emergence of fungal pathogens impacting animal and plant biodiversity. Approximately 8,000 species of fungi and Oomycetes are associated with plant disease. Indeed, across agriculture, such fungal diseases of plants include new devastating epidemics of trees and jeopardize food security worldwide by causing epidemics in staple and commodity crops that feed billions. Further, ingestion of mycotoxins contributes to ill health and causes cancer. Coordinated international research efforts, enhanced technology translation, and greater policy outreach by scientists are needed to more fully understand the biology and drivers that underlie the emergence of fungal diseases and to mitigate against their impacts. Here, we focus on poignant examples of emerging fungal threats in each of three areas: human health, wildlife biodiversity, and food security.

mBio

The future of fungi: Threats and opportunities

The fungal kingdom represents an extraordinary diversity of organisms with profound impacts across animal, plant, and ecosystem health. Fungi simultaneously support life, by forming beneficial symbioses with plants and producing life-saving medicines, and bring death, by causing devastating diseases in humans, plants, and animals. With climate change, increased antimicrobial resistance, global trade, environmental degradation, and novel viruses altering the impact of fungi on health and disease, developing new approaches is now more crucial than ever to combat the threats posed by fungi and to harness their extraordinary potential for applications in human health, food supply, and environmental remediation. To address this aim, the Canadian Institute for Advanced Research (CIFAR) and the Burroughs Wellcome Fund convened a workshop to unite leading experts on fungal biology from academia and industry to strategize innovative solutions to global challenges and fungal threats. This report provides recommendations to accelerate fungal research and highlights the major research advances and ideas discussed at the meeting pertaining to 5 major topics: (1) Connections between fungi and climate change and ways to avert climate catastrophe; (2) Fungal threats to humans and ways to mitigate them; (3) Fungal threats to agriculture and food security and approaches to ensure a robust global food supply; (4) Fungal threats to animals and approaches to avoid species collapse and extinction; and (5) Opportunities presented by the fungal kingdom, including novel medicines and enzymes.

G3 Genes, Genomes, Genetics

Mycoplasmosis

Mycoplasmosis is caused by infection with a unique group of bacteria that lack cell walls but possess distinctive plasma membranes. Mycoplasma are also the smallest self-replicating life-forms, and they are responsible for a variety of diseases in humans, animals, insects, and plants. These bacteria can cause acute and chronic diseases in hosts that they infect, and they are also implicated with other microbes as causes of disease when the immune system of the host has become impaired through concurrent infection by other disease agents or through other processes. This chapter focuses on mycoplasmal infections of birds, the most significant of which are caused by Mycoplasma gallisepticum (MG), M. meleagridis (MM), and M. synoviae (MS). Only MG is of known importance for wild birds.

Information and Technology Report

Population densities and trends of landbirds in the National Park of American Samoa

The National Park of American Samoa (NPSA), which protects some of the most intact tropical rainforest in the South Pacific, is exposed to recurring, intense tropical cyclones, including Tropical Cyclone Gita in 2018. In combination with other anthropogenic pressures, cyclones represent a potential source of disturbance to landbird populations, particularly native frugivorous and seed-dispersing species. Long-term monitoring provides a means to evaluate population trajectories following disturbance events and to identify potential management gaps. Landbird surveys were conducted in the Tutuila and Taʻū units of NPSA in 2011, 2018, and 2023 using point-transect distance sampling, with vegetation composition and structure quantified at each sampling station. Species-specific detection functions were fitted to count data to estimate densities by unit, with variance estimated using bootstrap procedures. Comparisons of 2018 and 2023 density estimates using two-sample z-tests indicated that changes in most landbird populations were inconclusive. Since 2018, increases in density were observed for the Pacific Imperial Pigeon ( Ducula pacifica ) and Crimson-crowned Fruit Dove ( Ptilinopus porphyraceus ) on Tutuila, while decreases were observed for the Pacific Kingfisher ( Todiramphus sacer ) on Tutuila, and for the Polynesian Wattled Honeyeater ( Foulehaio carunculatus ), Polynesian Starling ( Aplonis tabuensis ), and Samoan Starling ( Aplonis atrifusca ) on Taʻū. The Many-colored Fruit Dove ( Ptilinopus perousii ) remained rare in both units, and the Manuʻa Shrikebill (Clytorhynchus vitiensis powelli) was narrowly distributed on Taʻū, with insufficient detections of either species to estimate density. The cryptic Spotless Crake ( Zapornia tabuensis ) was detected only in 2018. Changes in tree canopy cover and height did not exhibit patterns clearly associated with a major disturbance event and likely reflected differences in sampling frames among surveys. Invasive non-native plants, most notably Miconia crenata , were widespread in both units. Although many landbird populations in NPSA remain abundant, inference from current monitoring is constrained by limited information on vital rates and species-specific responses to invasive species, disease, habitat change, and extreme weather. As climate change is projected to increase tropical cyclone intensity in the South Pacific, sustained monitoring and targeted management will be important for understanding and conserving landbird populations in American Samoa.

National Park of American Samoa, Ta'u, Tutuila

Hyperspectral remote sensing of vegetation and agricultural crops: Knowledge gain and knowledge gap after 40 years of research

The focus of this chapter was to summarize the advances made over last 40+ years, as reported in various chapters of this book, in understanding, modeling, and mapping terrestrial vegetation using hyperspectral remote sensing (or imaging spectroscopy) using sensors that are ground-based, truck-mounted, airborne, and spaceborne. As we have seen in various chapters of this book and synthesized in this chapter, the advances made include: (a) significantly improved characterization and modeling of a wide array of biophysical and biochemical properties of vegetation, (b) ability to discriminate plant species and vegetation types with high degree of accuracies (c) reducing uncertainties in determining net primary productivity or carbon assessments from terrestrial vegetation, (d) improved crop productivity and water productivity models, (b), (e) ability to access stress resulting from causes such as management practices, pests and disease, water deficit or excess; , and (f) establishing more sensitive wavebands and indices to detect plant water\moisture content. The advent of spaceborne hyperspectral sensors (e.g., NASA’s Hyperion, ESA’s PROBA, and upcoming NASA’s HyspIRI) and numerous methods and techniques espoused in this book to overcome Hughes phenomenon or data redundancy when handling large volumes of hyperspectral data have generated tremendous interest in advancing our hyperspectral applications knowledge base over larger spatial extent such as region, nation, continent, and globe.

Book chapter

Juvenile i`iwi detected in lower elevations of Hawaii Volcanoes National Park

The Hawaiian islands are home to a diverse array of plants and animals found nowhere else on Earth. Among the most famous of these are the spectacular Hawaiian honeycreepers, a group that evolved from a single flock of ancestral finches into at least 54 unique species. Unfortunately, the same isolation that fostered such dramatic adaptive radiation left Hawaiian species vulnerable. Under the onslaught of alien species predation and competition, habitat degradation, and introduced infectious diseases and parasites, most of the surviving honeycreepers have become largely confined to higher elevations. Intact habitat exists above the warm-weather range of deadly introduced avian malaria ( Plasmodium relictum ), and its mosquito vector ( Culex quinquefasciatus ).

Hawai'i

Response to comment on “Persistence of pharmaceutical compounds and other organic wastewater contaminants in a conventional drinking-water-treatment plant”

The U.S. Geological Survey (USGS) and the Centers for Disease Control thank Dr. Till for her comments concerning our research ( Till, 2005 ) and welcome the opportunity to respond. The primary objective of our study was to evaluate the potential for organic wastewater-related contaminants (OWCs), including pharmaceuticals, to survive a conventional drinking-water-treatment process and persist in potable-water supplies ( Stackelberg et al., 2004 ). Our study was supported by two USGS laboratories: the National Water Quality Laboratory (NWQL), which provided the HPLC/ESI-MS and CLLE GC/MS data and the Ocala Water Quality and Research Laboratory (OWQRL), which provided the LC/MS data ( Stackelberg et al., 2004 ). Although discussed as distinct techniques by Dr. Till and indicated by differing acronyms to distinguish the laboratories producing the data, as described in our paper, the two LC/MS methods are very similar; they consist of a solid-phase extraction method with analysis of the extract produced using high-performance liquid chromatography coupled to an electrospray ionization mass spectrometer operated in the positive mode. The NWQL and OWQRL report ‘trace’ and ‘ultratrace’ determinations of analytes that provide significant benefit for describing the presence and fate of low-level contaminants. For mass spectral methods, an analyte is qualitatively identified by its retention time on the chromatographic column as well as the presence of two or more confirming ions with area ratios that match that of the reference standard compounds. Because of a recognized increased risk of false positives, these qualitative identification criteria are used in conjunction with abundant quality-control samples (detailed below) to confirm detection prior to making an estimate of the concentration. These qualitative identification criteria must be met before a compound is considered present (or detected) in a sample ( Oblinger Childress et al., 1999 ). When a compound has been qualitatively identified in an environmental sample (whether above or below its reporting level [RL]), it is assessed in context with associated field and laboratory blanks, field and laboratory replicates, and other data, such as appropriate laboratory reagent spikes. An environmental concentration is calculated only after determining that field and laboratory procedures did not contaminate the samples. The concentrations are then calculated from 5- to 8-point calibration curves using internal standard quantitation. Our lowest calibration standard is intentionally much lower than the RL, typically 10 times lower. The most abundant molecular or fragment ion is used for quantitation, and, for the two LC/MS methods, at least one, and where possible two, qualifier ions are used for confirmation. For the GC/MS method, with its greater degree of fragmentation, one quantitation and two qualifier ions are used. When any of the abovementioned qualitative identification criteria are not met, the analyte is considered not present and is reported as “less than” the RL.

Science of the Total Environment