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At least 19 recordsLinked to original sources

Rapid expansion of genotype D1.1 A(H5N1) influenza viruses in wild birds across North America during the 2024 migratory season

In late 2021, high pathogenicity avian influenza A(H5N1) clade 2.3.4.4b viruses entered North America and reassorted rapidly with local avian influenza viruses. In September 2024, we detected a new reassortant later classified as genotype D1.1. Using active and passive avian influenza surveillance across Canada and the USA, we tracked the emergence and rapid spread of D1.1 viruses in wild birds during the 2024 fall migration. Phylodynamic analysis showed that D1.1 viruses formed a monophyletic group and displaced earlier A(H5) genotypes across several flyways. Their expansion coincided with detections in other hosts, including 17 human cases, 4 of which were severe or fatal. None of the mammalian-adaptive markers detected in human cases were found in wild bird viruses, and candidate vaccine viruses retained antigenic cross-reactivity with D1.1 strains.

Nature medicine↗

Killer clays! Natural antibacterial clay minerals

The clay chemical properties that may be important in medicine were investigated. It was found that natural clay minerals can have striking and very specific effects on microbial populations. The effects can range from potentially enhanced microbial growth to complete sterilization. This paper presents evidence that natural clay minerals can be effective antimicrobial agents.

Mineralogical Society Bulletin↗

Stream sediment sources in Medicine Creek, northern Missouri and southern Iowa

This report presents the results of a cooperative study by the U.S. Geological Survey and Missouri Department of Natural Resources to quantify sediment transport source contributions in the Medicine Creek drainage basin. Understanding relative source contributions provides valuable information for selecting the conservation practices that may be most effective in reducing sediment and sediment-associated nutrient transport in the Medicine Creek drainage basin and similar areas of the Lower Grand River drainage basin. Sediment samples were collected from potential contributing areas (source samples) and from fluvial-transported samples (target samples). Source sample types included streambanks, row crop fields, and a combined pastures and forests category. Samples were analyzed for particle size and quantity of carbon, nitrogen, stable isotopes of carbon and nitrogen, and 49 mineral elements as potential tracers. Results for the carbon stable isotope ratio of carbon-13/carbon-12 (δ 13 C) and concentrations of total carbon, total nitrogen, calcium, potassium, and copper were selected by discriminant function analysis as the best combination of multiple tracers to differentiate each source type. The discriminant function analysis poorly differentiated pastures and forests, so these source types were combined. The sources defined by the discriminant function analysis were then used in an unmixing model to apportion sources for each target sample. In the study area, transported sediment was predominantly bank sediment, with an overall average of 86.9 percent of suspended-sediment samples and depositional streambed samples attributed to bank material. Suspended-sediment samples from the mainstem of Medicine Creek were dominated by bank sediments (average of 95.8 percent), and depositional streambed samples from throughout the drainage basin had more variable source contributions with an average of 71.1 percent attributed to bank material. The relative importance of upland sources (row crop fields and the combined pastures and forests category) varied seasonally and with streamflow but was not related to land use or drainage basin size. Relative contributions from upland sources were greater in the summer through winter rather than spring and during lower streamflow, though this may be driven by the seasonality of streamflow. These results indicate management practices that reduce bank erosion could be effective strategies for managing the dominant source of sediment and sediment-associated phosphorus.

Iowa, Missouri↗

Native peoples’ relationship to the California chaparral

Ethnographic interviews and historical literature reviews provide evidence that for many tribes of California, chaparral plant communities were a rich source of food, medicines, and technologies and that they supplemented natural fires with deliberate burning of chaparral to maximize its ability to produce useful products. Many of the most important chaparral plant species used in the food and material culture have strong adaptations to fire. Particularly useful were many annual and perennial herbs, which proliferate after fire from seed and bulb banks, shrub resprouts that made superb cordage and basketry material, as well as animals that were more readily caught in postfire environments. The reasons for burning in chaparral are grouped into seven ecological categories, each relying on a known response to fire of the chaparral community. The authors posit that tribes employed intentional burning to maintain chaparral in different ages and size classes to meet diverse food and material needs, tracking the change in plant and animal abundance and diversity, and shifts in shrub architecture and habitat structure during the recovery of the chaparral community. Areas were burned in ways designed to create a mosaic of open grassland and recently burned, young and mature stands of chaparral with different combinations of species and densities. This management conferred on chaparral plant communities a degree of spatial, structural, successional, and biotic diversity that exceeded what would have been the case in the absence of human intervention. These impacts are still evident on contemporary landscapes.

California↗

What makes a natural clay antibacterial?

Natural clays have been used in ancient and modern medicine, but the mechanism(s) that make certain clays lethal against bacterial pathogens has not been identified. We have compared the depositional environments, mineralogies, and chemistries of clays that exhibit antibacterial effects on a broad spectrum of human pathogens including antibiotic resistant strains. Natural antibacterial clays contain nanoscale (<200 nm), illite-smectite and reduced iron phases. The role of clay minerals in the bactericidal process is to buffer the aqueous pH and oxidation state to conditions that promote Fe 2+ solubility. Chemical analyses of E. coli killed by aqueous leachates of an antibacterial clay show that intracellular concentrations of Fe and P are elevated relative to controls. Phosphorus uptake by the cells supports a regulatory role of polyphosphate or phospholipids in controlling Fe 2+ . Fenton reaction products can degrade critical cell components, but we deduce that extracellular processes do not cause cell death. Rather, Fe 2+ overwhelms outer membrane regulatory proteins and is oxidized when it enters the cell, precipitating Fe 3+ and producing lethal hydroxyl radicals.

Environmental Science & Technology↗

Annual emissions of mercury to the atmosphere from natural sources in Nevada and California

The impact of natural source emissions on atmospheric mercury concentrations and the biogeochemical cycle of mercury is not known. To begin to assess this impact, mercury emissions to the atmosphere were scaled up for three areas naturally enriched in mercury: the Steamboat Springs geothermal area, Nevada, the New Idria mercury mining district, California, and the Medicine Lake volcano, California. Data used to scale up area emissions included mercury fluxes, measured in-situ using field flux chambers, from undisturbed and disturbed geologic substrates, and relationships between mercury emissions and geologic rock types, soil mercury concentrations, and surface heat flux. At select locations mercury fluxes were measured for 24 h and the data were used to adjust fluxes measured at different times of the day to give an average daily flux. This adjustment minimized daily temporal variability, which is observed for mercury flux because of light and temperature effects. Area emissions were scaled spatially and temporally with GIS software. Measured fluxes ranged from 0.3 to approximately 50 ng m-2 h-1 at undisturbed sites devoid of mercury mineralization, and to greater than 10,000 ng m-2 h-1 from substrates that were in areas of mercury mining. Area-averaged fluxes calculated for bare soil at Steamboat Springs, New Idria, and Medicine Lake of 181, 9.2, and 2 ng m-2 h-1, respectively, are greater than fluxes previously ascribed to natural non-point sources, indicating that these sources may be more significant contributors of mercury to the atmosphere than previously realized.

Environmental Geology↗

Geochemical processes related to mined, milled, or natural metal deposits in a rapidly changing global environment

The demand for metals and raw materials, such as nickel and copper, has been projected to expand in the coming decades, driven by the global energy transition, the need for green technologies, and expanding infrastructure. Consequently, the increasing extraction and production of mining waste can have adverse impacts on surrounding environments and human health. The aim of this thematic collection is to fill critical knowledge gaps in the present-day cycles of metal(loid)s from source to larger sinks, and the effect of environmental management, anthropogenic development, and climate change. Altogether, the studies have been conducted in different natural settings around the world and comprise investigations in laterites, a soil-medicinal plant system, watersheds, and banded iron formations, among others. The geochemical applications in tracing mineralization, its secondary products, and/or potential impact on the immediate environment are highly diverse with applied tools ranging from isotope tracers to major and trace element systematics. Particularly the use of rare earth elements, their patterns and anomalies are methods employed by several studies in this collection. We summarize the findings to offer a potential future direction for the use of geochemical tracing techniques in resource exploration in the context of climate change and environmental challenges.

Geochemistry: Exploration, Environment, Analysis↗

Experimental infectious pancreatic necrosis infections: propagative or point-source epidemic?

Experimentally initiated epidemics of infectious pancreatic necrosis in rainbow-trout fry were analyzed using a modification of the standard mathematical model for a simple propagative epidemic. Contrary to expectations, the value of the transmission parameter ( β ) was inversely related to initial density of susceptible hosts. This anomaly can be explained if we assume that the experimental epidemics were point-source rather than propagative epidemics. The implications of this conclusion for modeling experimental and natural epidemics are discussed.

Preventive Veterinary Medicine↗

Platinum and associated elements at the New Rambler mine and vicinity, Albany and Carbon Counties, Wyoming

Platinum-group metals in the Medicine Bow Mountains were first identified by W. C. Knight in 1901. In the Medicine Bow Mountains, these metals are commonly associated with copper, silver, or gold in shear zones that cut a series of mafic igneous and metamorphic rocks. At the New Rambler mine, where the initial discovery was made, about 50,000 tons of mine and mill waste contain an average of 0.3 percent copper, 7 ppm (parts per million) silver, 1 ppm platinum plus palladium, and 0.7 ppm gold. This material is believed to be from a low-grade envelope around the high-grade pod of complex ore that was mined selectively in the old workings. Soil samples in the vicinity of the New Rambler mine exhibit a wide range of content of several elements associated with the ore. Most of the variation can be attributed to contamination, from the mine workings. Even though soil samples identify a low-level copper anomaly that persists to the limit of the area sampled, soils do not offer a promising medium for tracing mineralization owing to the blanket of transported overburden. Stream sediments, if preconcentrated for analysis, do reveal anomalies not only in the contaminated stream below the New Rambler mine, but in adjacent drainage and on Dave Creek. Examination of a spectrum of elements in heavy-mineral concentrates from stream sediment may contribute to knowledge of the nature of the mineralization and of the basic geology of the environment. The sampling of bedrock exposures is not particularly fruitful because outcrops are sparse and the exposed rocks are the least altered and mineralized. Bedrock sampling does, however, provide information on the large size and provincial nature of the platinum-rich area. We feel that a properly integrated program of geological, geophysical, and geochemical exploration in the Medicine Bow Mountains and probably in the Sierra Madre to the west has a reasonable probability of successfully locating a complex ore body.

Circular↗

Susceptibility of zebrafish (Danio rerio) to a model pathogen, spring viremia of carp virus

To improve our understanding of the genetic basis of fish disease, we developed a pathogen model, using zebrafish ( Danio rerio ) and spring virema of carp virus (SVCV). Replicate groups of 10 fish were acclimated to 20 or 24&deg;C, then were exposed to SVCV concentrations of 10 3 to 10 5 plaque-forming units per milliliter (PFU/ml) of water and observed daily. In a second trial, fish were acclimated to 15&deg;C, and replicate groups of 10 fish were exposed to SVCV at a concentration of 10 5 PFU/ml; however, the temperature was raised 1&deg;C/wk. Moribund fish were collected for histologic examination, and dead fish were assayed for virus by use of cell culture and reverse transcriptase-polymerase chain reaction (RT-PCR) analysis. Mortality exceeded 50% in fish exposed to 10 5 PFU of SVCV/ml at the lower temperatures. Clinical signs of disease became evident seven days after viral exposure and were observed most consistently in fish of the 10 5 PFU/ml groups. Affected zebrafish were anorectic and listless, with epidermal petechial hemorrhages followed by death. Use of plaque assays and RT-PCR analysis confirmed presence of SVCV at titers &ge; 10 4 PFU/g of tissue. Histologic lesions included multifocal brachial necrosis and melanomacrophage proliferation in gills, liver, and kidneys. These results indicate that zebrafish are susceptible to infection by SVCV under conditions that mimic a natural route of exposure.

Comparative Medicine↗

Indiana and Landsat

Natural resources have always been a strength for Indiana. Once largely covered by forest, the State now includes a mix of forest, farmland, wetlands, and small lakes. In fact, farms and forested areas make up more than 80 percent of the land. The Ohio River forms the southern border, and the south shore of Lake Michigan contrasts with urban development in the northwestern corner. Indiana Dunes National and State Parks reside just east of the Chicago metropolitan area. Agriculture adds more than $30 billion to the economy in Indiana, which placed eighth in the country for agricultural exports at $4.6 billion in 2017. Indiana ranks in the top five States nationally for the production of corn and soybeans. The “Hoosier State” also grows sizable crops of popcorn, spearmint, peppermint, pumpkins, tomatoes, and watermelon. Additionally, hogs, cattle, dairy, and poultry contribute to the agricultural economy. Other industries important to Indiana include manufacturing, medicine, energy, and mining. Mineral sources vary from coal, building stone, and gypsum to sand, gravel, and shale. Landsat can help monitor the condition of natural resources and the effects of extreme weather events. Here are several ways Landsat has benefited Indiana.

Indiana↗

A probabilistic assessment methodology for the evaluation of geologic energy storage capacity—Natural gas storage in depleted hydrocarbon reservoirs

The need for energy storage, particularly underground, where capacity and duration may far exceed battery storage technologies, is especially relevant given the increasing demands for reliable power alongside the development of intermittent renewable electricity sources. Geologic energy storage facilities already exist, and expanded use would enable storing gases such as methane and hydrogen. In 2018, a National Academies of Sciences, Engineering, and Medicine report, “Future Directions for the U.S. Geological Survey's Energy Resources Program,” recommended that the U.S. Geological Survey (USGS) prioritize assessing underground energy storage in geologic formations in the United States. The U.S. Geological Survey has since developed a methodology for assessing natural gas storage capacities in depleted hydrocarbon reservoirs on a national scale. The methodology introduced in this report prescribes three approaches for calculating gas storage capacity. This methodology relies on the availability of input data, including cumulative hydrocarbon production records, reservoir petrophysical properties, and reservoir pressure data. Assessment inputs can be obtained from public, State-level databases and propriety national-scale databases, although the use of analogs could be warranted for estimating input parameters. Probabilistic assessment results are aggregated to play, petroleum province, regional, and national scales. The steps defined in this report are demonstrated on the Michigan Basin Province, which includes the Mississippian Sandstone Gas Play and the Clinton Structural Play. This methodology could be used to systematically and consistently assess hydrocarbon plays and provinces for natural gas storage capacity across the United States.

Michigan↗

Hydrology of area 54, northern Great Plains, and Rocky Mountain coal provinces, Colorado and Wyoming

A nationwide need for information characterizing hydrologic conditions in mined and potential mine areas has become paramount with the enactment of the Surface Mining Control and Reclamation Act of 1977. This report, one in a series covering the coal provinces nationwide, presents information thematically by describing single hydrologic topics through the use of brief texts and accompanying maps, graphs, or other illustrations. The summation of the topical discussions provides a description of the hydrology of the area. Area 54, in north-central Colorado and south-central Wyoming, is 1 of 20 hydrologic reporting areas of the Northern Great Plains and Rocky Mountain coal provinces. Part of the Southern Rocky Mountains and Wyoming Basin physiographic provinces, the 8,380-square-mile area is one of contrasting geology, topography, and climate. This results in contrasting hydrologic characteristics. The major streams, the North Platte, Laramie, and Medicine Bow Rivers, and their principal tributaries, all head in granitic mountains and flow into and through sedimentary basins between the mountain ranges. Relief averages 2,000 to 3,000 feet. Precipitation in the mountains may exceed 40 inches annually, much of it during the winter, which produces deep snowpacks. Snowmelt in spring and summer provides most streamflow. Precipitation in the basins averages 10 to 16 inches annually, insufficient for sustained streamflow; thus, streams originating in the basins are ephemeral. Streamflow quality is best in the mountains where dissolved-solids concentrations generally are least. These concentrations increase as streams flow through sedimentary basins. The increases are mainly natural, but some may be due to irrigation in and adjacent to the flood plains. In the North Platte River, dissolved-solids concentrations are usually less than 300 milligrams per liter; in the Laramie and the Medicine Bow Rivers, the concentrations may average 500 to 850 milligrams per liter. However, water-quality stations on the Laramie and the Medicine Bow Rivers are farther removed from the mountain sources than the stations in the North Platte drainage. Because of the semiarid climate of the basins, soils are not adequately leached. Consequently, flow in ephemeral streams usually has a larger concentration of dissolved solids than that in perennial streams, averaging 1,000 to 1,600 milligrams per liter. Aquifers containing usable ground water are combined into three groups: (1) consolidated and unconsolidated non-coal-bearing Quaternary and Upper Tertiary deposits, (2) Mesozoic and Paleozoic sedimentary rocks, and (3) Lower Tertiary and Upper Cretaceous sedimentary rocks containing coal. These aquifers are used for municipal, domestic, irrigation, and stock supplies. Well yields range from about 5 to 1,000 gallons per minute, and depend on type of aquifer, saturated thickness, and degree of fracturing. The best quality ground water usually comes from the non-coal-bearing Quaternary and Upper Tertiary rocks or the Mesozoic and Paleozoic rocks; often it is dominated by calcium and bicarbonate ions. The coal-bearing formations have a large variability in water chemistry; dominant ions may be bicarbonate or sulfate and sodium, calcium, or magnesium. Dissolved-solids concentrations are generally larger than in the former two groups. The U.S. Geological Survey operates a network of hydrologic stations to observe the streamflow and groundwater conditions. This network currently includes 31 surface-water stations and 35 observation wells; information is available for many other sites observed in the past. Data available include rate of flow, water levels, and water quality; much of the data are available in published reports or from computer storage through the National Water Data Exchange (NAWDEX) or the National Water Data Storage and Retrieval System (WATSTORE). Five formations of Late Cretaceous and early Tertiary age contain coal.

Colorado, Wyoming↗

Northern Great Plains

In the Northern Great Plains, the timing and quantity of both precipitation and runoff have important consequences for water supplies, agricultural activities, and energy production. Overall, climate projections suggest that the number of heavy precipitation events (events with greater than 1 inch per day of rainfall) is projected to increase. Moving forward, the magnitude of year-to-year variability overshadows the small projected average decrease in streamflow. Changes in extreme events are likely to overwhelm average changes in both the eastern and western regions of the Northern Great Plains. Major flooding across the basin in 2011 was followed by severe drought in 2012, representing new and unprecedented variability that is likely to become more common in a warmer world. The Northern Great Plains region plays a critical role in national food security. Among other anticipated changes, projected warmer and generally wetter conditions with elevated atmospheric carbon dioxide concentrations are expected to increase the abundance and competitive ability of weeds and invasive species, increase livestock production and efficiency of production, and result in longer growing seasons at mid- and high latitudes. Net primary productivity, including crop yields and forage production, is also likely to increase, although an increasing number of extreme temperature events during critical pollination and grain fill periods is likely to reduce crop yields. Ecosystems across the Northern Great Plains provide recreational opportunities and other valuable goods and services that are ingrained in the region’s cultures. Higher temperatures, reduced snow cover, and more variable precipitation will make it increasingly challenging to manage the region’s valuable wetlands, rivers, and snow-dependent ecosystems. In the mountains of western Wyoming and western Montana, the fraction of total water in precipitation that falls as snow is expected to decline by 25% to 40% by 2100 under a higher scenario (RCP8.5), which would negatively affect the region’s winter recreation industry. At lower-elevation areas of the Northern Great Plains, climate-induced land-use changes in agriculture can have cascading effects on closely entwined natural ecosystems, such as wetlands, and the diverse species and recreational opportunities they support. Energy resources in the Northern Great Plains include abundant crude oil, natural gas, coal, wind, and stored water, and to a lesser extent, corn-based ethanol, solar energy, and uranium. The infrastructure associated with the extraction, distribution, and energy produced from these resources is vulnerable to the impacts of climate change. Railroads and pipelines are vulnerable to damage or disruption from increasing heavy precipitation events and associated flooding and erosion. Declining water availability in the summer would likely increase costs for oil production operations, which require freshwater resources. These cost increases will either lead to lower production or be passed on to consumers. Finally, higher maximum temperatures, longer and more severe heat waves, and higher overnight lows are expected to increase electricity demand for cooling in the summer, further stressing the power grid. Indigenous peoples in the region are observing changes to climate, many of which are impacting livelihoods as well as traditional subsistence and wild foods, wildlife, plants and water for ceremonies, medicines, and health and well-being. Because some tribes and Indigenous peoples are among those in the region with the highest rates of poverty and unemployment, and because many are still directly reliant on natural resources, they are among the most at risk to climate change (e.g., Gamble et al. 2016, Cozzetto et al. 2013, Espey et al. 2014, Wong et al. 2014, Kornfeld 2016, Paul and Caplins 2016, Maynard 2014, USGCRP 2017)

Report↗

Selected anthropogenic contaminants in groundwater, Papio-Missouri River Natural Resources District, eastern Nebraska, 1992–2020

A study in cooperation with the Papio-Missouri River Natural Resources District was completed in 2019 to determine the concentration of contaminants of emerging concern (CEC) in groundwater in the Papio-Missouri River Natural Resources District, eastern Nebraska. Each well was sampled twice (in June and October or November) in 2019, totaling 34 samples. Samples were analyzed for 132 CECs, which include pharmaceutical, steroid hormone, and other organic chemicals. Seven of the 132 CEC analytes were detected in samples collected during this study. The most commonly detected CEC in this study was the antibiotic sulfamethoxazole. Other CECs detected in this study were nicotine, methyl-1 H -benzotiazole (industrial product), acetaminophen (analgesic), caffeine, and metformin (diabetes medicine). None of the detected CECs have health-based water-quality standards. The agricultural herbicide atrazine was also sampled for and was detected in 15 of 26 samples from 8 wells, but all samples were below the established water-quality standard. Nitrate, dissolved oxygen, and iron sampling results for 2010–19 and 1992–2020 were also assessed to determine the extent and trend of anthropogenic contamination in the Papio-Missouri River Natural Resources District. Nitrate as nitrogen was detected at a concentration greater than 4 milligrams per liter in 92 samples (19 percent), and detections in 36 samples (7.6 percent) exceeded 10 milligrams per liter, which is the U.S. Environmental Protection Agency’s maximum contaminant level for drinking water and Nebraska’s Title 118 maximum contaminant level for groundwater. Time series analysis showed that nitrate concentrations are not increasing or decreasing in any of the aquifers except for in three specific well nests, which are in phase 2 management areas. Dissolved oxygen results indicate potential denitrification throughout the Elkhorn alluvial aquifer; iron concentrations indicate potential denitrification in parts of the Missouri River alluvial aquifer.

Nebraska↗

A snapshot of women of the U.S. Geological Survey in STEM and related careers

Introduction The term “STEM” has been used to group together the fields of science, technology, engineering, and mathematics and to describe education and professions related to these fields. The professional fields connected to STEM education are thought of as engineering, medicine, and computer technology. Yet these professional fields are merely the tip of the iceberg. Numerous opportunities in these fields encompass environmental research. The possibilities range from predicting the next earthquake to saving polar bears from extinction to developing a vaccine for salmon measles. The science of natural systems is complex and often requires people from a variety of fields of expertise to make headway with a solution. To that end, the U.S. Geological Survey (USGS) has long recognized the need for a diversity of STEM expertise to address the Nation’s environmental research needs and the vision to facilitate integration of these fields. We are team builders! In this book, we point out the many facets of research carried out by USGS STEM scientists in an effort to show career options and pathways not typically pursued. The women portrayed were selected by USGS associate and regional directors as representative of particular fields and to inspire future generations.

Circular↗

Ills in the pipeline: Emerging infectious diseases and wildlife

In the recent film Contagion, a medical thriller released in fall 2011, the fictitious MEV-1 virus&mdash;passed from bat to pig to humans&mdash;spreads across the globe as easily as the common cold, killing millions of humans and causing mass hysteria as medical researchers race to find a cure. Though it's Hollywood hyperbole, the film holds a kernel of truth: Researchers believe that the close proximity of Malaysian hog farms to forested areas&mdash;the natural habitat for fruit bats&mdash;allowed the previously unknown Nipah virus to spill from bats into pigs and subsequently into people, resulting in more than 100 human deaths (Epstein et al. 2006). There is no doubt that in recent times we have seen an unprecedented number of emerging infectious diseases, defined by the Institute for Medicine as new, reemerging, or drug-resistant infections whose incidence has increased or whose incidence threatens to increase in the near future. Many of these have a wildlife origin (Taylor et al. 2001). While this jump may be due, in part, to increased vigilance and reporting, there is a general consensus that current global conditions are creating a situation that is very favorable to the transmission of microbes that cause diseases. (For reviews, see Daszak et al. 2001 and Keesing et al. 2010). Likewise, it's increasingly important that wildlife professionals become aware of how and why new infectious diseases spread and what, if anything, can be done to minimize impacts on wildlife.

The Wildlife Professional↗