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Double-crested Cormorant studies at Little Galloo Island, Lake Ontario in 2013: Diet composition, fish consumption and the efficacy of management activities in reducing fish predation

For almost two decades Little Galloo Island (LGI) has supported a large colony of Double-crested Cormorants ( Phalacrocorax auritus ) in the eastern basin of Lake Ontario. Cormorant nest counts on the island since the early 1990's have averaged 4,297 per year. However, less than 2,000 pairs have nested on the island in three of the past five years. The highest count was reached in 1996 with 8,410 nesting pairs on the island. Johnson et al. (2013) estimated that cormorants from LGI alone have consumed 504 million fish since 1992. The proliferation of cormorants in the eastern basin of Lake Ontario coincided with declines in two important recreational fish species, smallmouth bass ( Micropterus dolemieu ) and yellow perch ( Perca falvescens ). Lantry et al. (2002) and Burnett et al. (2002) provide convincing evidence linking cormorant population increases to declining eastern basin smallmouth bass and yellow perch stocks. Decline of these fish stocks was evident only in the eastern basin, suggesting a localized problem, which is consistent with the halo effect where large piscivorous waterbird colonies may deplete local fish stocks (Birt et al. 1987). The year 2013 marked the twenty second consecutive year of study of the food habits and fish consumption of LGI cormorants and the fifteenth consecutive year evaluating the efficacy of management activities to control the reproductive success of cormorants nesting at LGI. The program consists mainly of spraying cormorant eggs with food grade vegetable oil as well as the culling of adult and immature birds. This paper reports the findings of work carried out in 2013 at LGI.

New York

Double-crested cormorant studies at Little Galloo Island, Lake Ontario in 2008: Diet composition, fish consumption and the efficacy of management activities in reducing fish predation

For almost two decades Little Galloo Island (LGI)has supported the largest colony of double-crested cormorants ( Phalacrocorax auritus ) in the eastern basin of Lake Ontario. Cormorant nest counts on the island since the early 1990's have averaged about 5,000 per year reaching a high of 8,400 in 1996. Johnson et al. (2008) estimate that cormorants from LGI alone have consumed 400 million fish since 1992. The proliferation of cormorants in the eastern basin of Lake Ontario has coincided with declines in two important recreational fish species, smallmouth bass and yellow perch. Lantry et al. (2002) and Burnett et al. (2002) provide convincing evidence linking cormorant population increases to declining eastern basin smallmouth bass and yellow perch stocks. Decline of these fish stocks is evident only in the eastern basin, suggesting a localized problem which is consistent with the halo effect where large piscivorous waterbird colonies may deplete local fish stocks (Birt et al. 1987). The year 2008 marked the seventeenth consecutive year of study of the food habits and fish consumption of LGI cormorants, and represented the tenth consecutive year evaluating the efficacy of management activities to control the reproductive success of cormorants nesting at LGI. The program consists mainly of spraying cormorant eggs with oil as well as the culling of adult and immature birds.This paper reports the findings of work carried outin 2008 at LGI.

Lake Ontario

Lake trout rehabilitation in Lake Ontario, 2013

Each year we report on the progress toward rehabilitation of the Lake Ontario lake trout ( Salvelinus namaycush ) population, including the results of stocking, annual assessment surveys, creel surveys, and evidence of natural reproduction observed from all standard surveys performed by USGS and NYSDEC. No lake trout from the 2011 year class were stocked into Lake Ontario during October 2011 or May 2012; therefore, no stocked age-2 lake trout were available to bottom trawls during 2013. The catch per unit effort of adult lake trout in gill nets increased each year from 2008-2013, recovering from historic lows recorded during 2005-2007. Adult abundance in 2013 exceeded the level of the 1999-2004 mean which at the time appeared to be the new stable abundance following from the 1993 stocking cuts. The 2013 rate of wounding by sea lamprey ( Petromyzon marinus ) on lake trout caught in gill nets was 2.26 fresh (A1) wounds per 100 lake trout and was slightly above target (2 wounds per 100 lake trout). Estimates from the NYSDEC fishing boat survey indicated 2013 angler catch and harvest rates were the highest estimated in more than 10 years. Adult lake trout condition (indexed from annual length–weight regressions) increased in 2007-2009 from relatively low values observed during 2000-2006, remained nearly constant during 2010-2012 at the highest values observed for the 30 year time-series, but declined in 2013. The low condition values observed for juvenile lake trout during 2010-2012 continued during 2013. Reproductive potential for the adult stock, determined from the annual egg deposition index, rebounded from the 2007-2008 values that were the lowest observed since 1985 and stabilized during 2009-2013 at a mean value of 20.7. In 2013, five age-1 and three age-2 naturally produced lake trout were collected from trawl survey catches providing first evidence of a 2012 year class and continued evidence of a 2011 year class.

Lake Ontario

Lake trout (Salvelinus namaycush) rehabilitation in Lake Ontario, 2021

Each year we report on the progress toward rehabilitation of the Lake Ontario lake trout ( Salvelinus namaycush ) population, including the results of stocking, annual assessment surveys, creel surveys, and evidence of natural reproduction observed from standard surveys performed by U.S. Geological Survey (USGS) and New York State Department of Environmental Conservation (NYSDEC). The catch per unit effort (CPUE) of adult lake trout in gill nets increased each year from 2008-2014, recovering from historic lows recorded during 2005-2007. Adult abundances declined each year from 2015 to 2017; and in 2017 were about 35% below the 2014 peak and 17% below the 1999-2004 mean. Adult abundance increased in 2018 by 51% over the 2017 value and remained nearly stable between 2018 and 2021. The 2020 rate of wounding by sea lamprey ( Petromyzon marinus ) on lake trout caught in gill nets was 1.68 A1 wounds (fresh wound) per 100 lake trout and was near target (2 wounds per 100 lake trout). Condition values for adult lake trout, indexed in September from the predicted weight for a 700 mm lake trout from annual length-weight regressions and Fulton’s K for age-6 males, were among the highest levels observed for the 1983-2021 time series. Reproductive potential for the adult stock indexed from the CPUE of mature females ≥ 4000 g was again above the target in 2021 continuing a trend observed in ten of the last eleven years. The 2021 catch of young wild lake trout marked the 27th observation in the last 28 years, however only two sites off the mouth of the Niagara River were surveyed.

Lake Ontario

Bottom trawl assessment of benthic preyfish community in Lake Ontario

Since 1978, the Lake Ontario benthic preyfish survey has provided information on the status and trends of the benthic preyfish community related to Lake Ontario Fish Community Objectives that include understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate lake-wide sampling sites which drastically increased the survey’s spatial coverage. In 2020, the collaborative benthic preyfish survey completed 82 bottom trawl tows across main lake and embayment sites at depths from 6 to 226 m. Compared to previous years, the survey was largely confined to ports east of Rochester on the US side, and east of Wesleyville on the Canadian side due to COVID-19 travel constraints. In total, the survey sampled 109,315 fish from 32 species in 2020. Round goby was the most numerically abundant species comprising 59% of total catch, followed by alewife (27%), and deepwater sculpin (7%). Despite being a common species represented in historical catches, slimy sculpin comprised only 0.05% of the total catch, with only 53 fish sampled in 2020. Annual biomass indices were among the lowest reported for slimy sculpin across the entire time series, whereas deepwater sculpin biomass remained high but showed a decrease from values observed in 2019. Deepwater sculpin condition in 2020 was lower than in 2019 but similar to values observed in 2017-2018. Community diversity remained high relative to historically lower values when round goby and deepwater sculpin were not captured in trawl catches. Round goby biomass in 2020 was the highest on the US time series, but not on the lake-wide series, highlighting the need to resume lake-wide sampling to further understand how regional vs lake-wide sampling affects benthic preyfish population estimates.

Lake Ontario

Status of important prey fishes in the U.S. waters of Lake Ontario, 2013: Introduction and methods

Lake Ontario has a mean depth of 86 m (282 ft) and a maximum depth of 244 m (801 ft) (Herdendorf 1982). The southern, New York portion of the lake has the deepest water (Figure 1). In New York waters, about 67% of the lake is <160 m (525 ft) deep and about 82% of the lake is <180 m (591 ft) deep. The U.S. Geological Survey (USGS) and New York State Department of Environmental Conservation (NYSDEC) have cooperatively assessed Lake Ontario prey fishes each year since 1978. Bottom trawl assessments were initially focused on Alewife Alosa pseudoharengus (April), Rainbow Smelt Osmerus mordax (June), and Slimy Sculpin Cottus cognatus (October). Seasonal survey timing corresponded to the peak catches in 1972 when collections were made every month May to October (Owens et al. 2003). Twelve transects were established at approximately 25-km intervals along the U.S. shoreline (Figure 2). Alewife assessment was conducted at all transects, Rainbow Smelt assessment at all transects except Fair Haven, and six transects representing eastern, southern, and western lake areas were sampled for Slimy Sculpin (Figure 2). Changes in the Lake Ontario ecosystem (species invasion, oligotrophication, native species rebound) require ongoing evaluation of current methods which sometimes necessitate redistribution of trawl effort, or changes in sampling designs and/or gear. For instance, the spring Alewife assessment is now used also to assess invasive Round Goby Neogobius melanostomus population dynamics. Likewise, the fall benthic fish assessment (formerly sculpin assessment) now also tracks dynamics of the rebounding native Deepwater Sculpin Myoxocephalus thompsonii population, the apparent declining population of Slimy Sculpin, and fall distribution of Round Goby.

Lake Ontario

Status of rainbow smelt in the U.S. waters of Lake Ontario, 2013

Rainbow Smelt Osmerus mordax are the second most abundant pelagic prey fish in Lake Ontario after Alewife Alosa psuedoharengus . The 2013, USGS/NYSDEC bottom trawl assessment indicated the abundance of Lake Ontario age-1 and older Rainbow Smelt decreased by 69% relative to 2012. Length frequency-based age analysis indicated that age-1 Rainbow Smelt constituted approximately 50% of the population, which is similar to recent trends where the proportion of age-1 has ranged from 95% to 42% of the population. While they constituted approximately half of the catch, the overall abundance index for age 1 was one of the lowest observed in the time series, potentially a result of cannibalism from the previous year class. Combined data from all bottom trawl assessments along the southern shore and eastern basin indicate the proportion of the fish community that is Rainbow Smelt has declined over the past 30 years. In 2013 the proportion of the pelagic fish catch (only pelagic species) that was Rainbow Smelt was the second lowest in the time series at 3.1%. Community diversity indices, based on bottom trawl catches, indicate that Lake Ontario fish community diversity, as assessed by bottom trawls, has sharply declined over the past 36 years and in 2013 the index was the lowest value in the time series. Much of this community diversity decline is driven by changes in the pelagic fish community and dominance of Alewife.

Lake Ontario

Comparison of fishes in nearshore areas of the St. Lawrence River, New York over 35 years

Fishes of the nearshore waters of the St. Lawrence River provide forage for valuable sport fisheries and are important biological indicators of condition and change. This fish community differs slightly among various reaches of the St. Lawrence River from New York to Quebec (Carlson et al. 2006, Eckert and Hanlon 1977, Kapuscinski 2011, LaViolette et al. 2003, Mandrak et al. 2006, McKenna et al. 2005). Nearshore habitat has been described by McKenna et al. (2012), and others have suggested that there were changes over the last few decades (Clapsadl 1993, Kapuscinski and Farrell 2013). More definitive work needs to be completed on submerged aquatic vegetation habitats. In this paper, changes in the nearshore fish species composition for the New York reach from Cape Vincent to Moses-Saunders Dam are examined through comparison of results from 2009-2010 (McKenna et al. 2012) and 1976 surveys (Eckert and Hanlon 1977).

New York

Diet composition and fish consumption of double-crested cormorants from three St. Lawrence River colonies in 2013

Double-crested Cormorants ( Phalacrocorax auritus ) were first observed nesting in the upper St. Lawrence River at Strachan Island in 1992. Cormorants now nest at a number of islands in the Thousand Islands section of the river. Griswold, McNair, and Strachan islands are among the largest colonies in the upper river. Until 2011, nest counts had remained relatively stable, ranging from 200 to 603 nests per colony. However, since 2011 the number of nests at McNair Island have exceeded 700 each year. Although the size of cormorant colonies in the upper St. Lawrence River is smaller than those in the eastern basin of Lake Ontario, the close proximity of islands in the upper river that have colonies may cause a cumulative fish consumption effect similar to a larger colony. Because of increasing numbers of Double-crested Cormorants in the upper St. Lawrence River and the possible effects on fish populations, studies were initiated in 1999 to quantify cormorant diet and fish consumption at the three largest colonies. From 1999 to 2012, these studies have shown that cormorants consumed about 128.6 million fish including 37.5 million yellow perch ( Perca flavescens ), 17.4 million rock bass ( Ambloplites rupestris ) and 1.0 million smallmouth bass ( Micropterus dolemieu ) (Johnson et al. 2012). During this same time period fish assessment studies near some of these islands have shown a major decrease in yellow perch populations (Klindt 2007). This occurrence is known as the halo effect and happens when piscivorous birds deplete local fish populations in areas immediately surrounding the colony (Ashmole 1963). This paper describes the diet and fish consumption of cormorants in the upper St. Lawrence River in 2013.

New York

Benthic prey fish assessment, Lake Ontario 2013

The 2013 benthic fish assessment was delayed and shortened as a result of the U.S. Government shutdown, however the assessment collected 51 of the 62 planned bottom trawls. Over the past 34 years, Slimy Sculpin abundance in Lake Ontario has fluctuated, but ultimately decreased by two orders of magnitude, with a substantial decline occurring in the past 10 years. The 2013 Slimy Sculpin mean bottom trawl catch density (0.001 ind.·m-2, s.d.= 0.0017, n = 52) and mean biomass density (0.015 g·m-2 , s.d.= 0.038, n = 52) were the lowest recorded in the 27 years of sampling using the original bottom trawl design. From 2011-2013, the Slimy Sculpin density and biomass density has decreased by approximately 50% each year. Spring bottom trawl catches illustrate Slimy Sculpin and Round Goby Neogobius melanostoma winter habitat overlaps for as much as 7 months out of a year, providing opportunities for competition and predation. Invasive species, salmonid piscivory, and declines in native benthic invertebrates are likely all important drivers of Slimy Sculpin population dynamics in Lake Ontario. Deepwater Sculpin Myoxocephalus thompsonii, considered rare or absent from Lake Ontario for 30 years, have generally increased over the past eight years. For the first time since they were caught in this assessment, Deepwater Sculpin density and biomass density estimates declined from the previous year. The 2013 abundance and density estimates for trawls covering the standard depths from 60m to 150m was 0.0001 fish per square meter and 0.0028 grams per square meter. In 2013, very few small (< 80 mm) Deepwater Sculpin were caught and most sculpin were at sites of 150 meters or greater, which is in contrast to previous years when juvenile fish were caught around 80-100 meters. The reduced effort and late seasonal timing of the 2013 assessment make it difficult to have high confidence in declines observed in 2013, however observed Alewife Alosa psuedoharengus abundance increases and reduced juvenile Deepwater Sculpin catches are consistent with the hypothesis that Alewife negatively influence Deepwater Sculpin recruitment. Nonnative Round Gobies were first detected in the USGS/NYSDEC Lake Ontario spring Alewife assessment in 2002. Since that assessment, observations indicate their population has expanded and they are now found along the entire south shore of Lake Ontario, with the highest densities in U.S. waters just east of the Niagara River confluence. In the 2013 spring-based assessment, both the abundance and weight indices increased slightly as compared to 2012. The number index value of 16.6 was 30% of the maximum number observed in 2008 when the number index was 95.2. Round Goby density estimates from the 2013 fall benthic prey fish survey were 33 times greater than fall Slimy Sculpin density, indicating Round Goby are now the dominant Lake Ontario benthic prey fish.

Lake Ontario

Status of alewife and rainbow smelt in U.S. waters of Lake Ontario, 2015

In 2015 the joint USGS and NYSDEC surveys for Alewife and Rainbow Smelt were combined for the first time into a comprehensive spring pelagic prey fish survey. The adult Alewife abundance and weight indices in 2015 increased slightly from 2014 levels, and adult Alewife abundance has remained relatively stable for the past five years. Adult Alewife condition in both spring and fall increased from 2014 values and was above long-term means. Yearling Alewife abundance was the lowest observed in the 38-year time series. Alewife year class strength at age 1 is related to the number of spawning adults and summer temperatures and winter duration in the first year after hatching. Moderate year classes were produced during 2009-2011, and 2012 was the largest year class in the time series. However, severe winters in 2013-2014 and 2014-2015 contributed to two successive very small year classes for the first time in the time series. We expect adult Alewife abundance and biomass to decline in 2016 as older and larger fish decline in the population. The number of spawning adults increased in 2015, summer temperatures were slightly below average, and the anticipated winter duration is below average (i.e., milder winter) for 2015-2016, so these conditions will likely produce a low to moderate year class. A third successive weak year class could be problematic for the Lake Ontario Alewife population and may be of concern to binational lake managers. Rainbow Smelt were also assessed and the population continues to persist at a low and stable level.

Lake Ontario

Lake Ontario benthic prey fish assessment, 2015

Benthic prey fishes are a critical component of the Lake Ontario food web, serving as energy vectors from benthic invertebrates to native and introduced piscivores. Since the late 1970’s, Lake Ontario benthic prey fish status was primarily assessed using bottom trawl observations confined to the lake’s south shore, in waters from 8 – 150 m (26 – 492 ft). In 2015, the Benthic Prey Fish Survey was cooperatively adjusted and expanded to address resource management information needs including lake-wide benthic prey fish population dynamics. Effort increased from 55 bottom trawl sites to 135 trawl sites collected in depths from 8 - 225m (26 – 738 ft). The spatial coverage of sampling was also expanded and occurred in all major lake basins. The resulting distribution of tow depths more closely matched the available lake depth distribution. The additional effort illustrated how previous surveys were underestimating lake-wide Deepwater Sculpin, Myoxocephalus thompsonii , abundance by not sampling in areas of highest density. We also found species richness was greater in the new sampling sites relative to the historic sites with 11 new fish species caught in the new sites including juvenile Round Whitefish, P rosopium cylindraceum , and Mottled sculpin, Cottus bairdii . Species-specific assessments found Slimy Sculpin, Cottus cognatus abundance increased slightly in 2015 relative to 2014, while Deepwater Sculpin and Round Goby, Neogobius melanostomus, dramatically increased in 2015, relative to 2014. The cooperative, lake-wide Benthic Prey Fish Survey expanded our understanding of benthic fish population dynamics and habitat use in Lake Ontario. This survey’s data and interpretations influence international resource management decision making, such as informing the Deepwater Sculpin conservation status and assessing the balance between sport fish consumption and prey fish populations. Additionally a significant Lake Ontario event occurred in May 2015 when a single juvenile Bloater Coregonus hoyi , was captured during the spring bottom trawl survey at 95m (312 ft) near Oswego, NY. This native, deep-water prey fish, last captured in Lake Ontario survey trawls in 1983, is part of an international, collaborative coregonid restoration effort in the Great Lakes.

Lake Ontario

Lake Ontario benthic prey fish assessment, 2016

Benthic prey fishes are a critical component of the Lake Ontario food web, serving as energy vectors from benthic invertebrates to native and introduced piscivores. Beginning in 1978, Lake Ontario benthic prey fishes were assessed using bottom trawls collected from the lake’s south shore (depth range: 8 – 150 m). Historically, the survey targeted the then dominant species, Slimy Sculpin, however in 2015, the Benthic Prey Fish Survey was cooperatively expanded to a whole-lake survey, to address resource management information needs related to Round Goby, Deepwater Sculpin, and nearshore native fishes. In 2016, 142 trawls were collected at 18 transects, and spanned depths from 6 – 225 m. Trawl catches indicated the benthic and demersal prey fish community was dominated by Round Goby, however the proportional importance of native Deepwater Sculpin is increasing. Species-specific assessments found lake-wide Round Goby density (~600 fish per hectare) was slightly lower in 2016 relative to 2015. Deepwater Sculpin density has generally increased since 2004. In 2016 their estimated density was greater than 100 fish per hectare. Slimy Sculpin density (15 fish/ha) was similar to the past 3 years. Catches of juvenile Slimy Sculpin continue to be low relative to historic catches and the timing of their decline coincides with the proliferation of Round Goby. Additionally, we found a strong negative relationship between trawl catches of Round Goby and near-shore native benthic and demersal fishes such as Trout-perch, Johnny Darter and Spottail Shiner. The introduction of Round Goby and the reappearance of native Deepwater Sculpin have shaped the Lake Ontario benthic prey fish community.

Lake Ontario

Acoustic assessment of pelagic planktivores, 2016

Alewife ( Alosa pseudoharengus ) and Rainbow Smelt ( Osmerus mordax ) are the most abundant pelagic planktivores in Lake Ontario (Weidel et al 2017), and the most important prey for salmon and trout, making up greater than 90% of the diet of the top predator, Chinook salmon (Lantry 2001, Brandt 1986), and supporting a multimillion dollar sportfishery. Alewife are also important prey for warm water predators, notably Walleye ( Sander vitreus ). Abundance of Alewife and smelt has declined since the 1980s, likely due to reduced nutrient loading, proliferation of invasive dreissenid mussels, and predation by stocked salmon and trout. Cisco ( Coregonus artedi ), a native planktivore, historically dominated the offshore pelagic prey fish of Lake Ontario, but their populations were severely reduced in the mid-20th century due to overfishing and competition with Alewife and smelt. Remnant populations of Cisco still exist, mostly in the eastern basin, and Cisco produce periodic strong year classes once or twice per decade (Owens et al 2003, most recently in 2012 and 2014 (OMNRF, 2017). Alewife ( Alosa pseudoharengus ) and Rainbow Smelt ( Osmerus mordax ) are the most abundant pelagic planktivores in Lake Ontario (Weidel et al 2017), and the most important prey for salmon and trout, making up greater than 90% of the diet of the top predator, Chinook salmon (Lantry 2001, Brandt 1986), and supporting a multimillion dollar sportfishery. Alewife are also important prey for warm water predators, notably Walleye ( Sander vitreus ). Abundance of Alewife and smelt has declined since the 1980s, likely due to reduced nutrient loading, proliferation of invasive dreissenid mussels, and predation by stocked salmon and trout. Cisco ( Coregonus artedi ), a native planktivore, historically dominated the offshore pelagic prey fish of Lake Ontario, but their populations were severely reduced in the mid-20th century due to overfishing and competition with Alewife and smelt. Remnant populations of Cisco still exist, mostly in the eastern basin, and Cisco produce periodic strong year classes once or twice per decade (Owens et al 2003, most recently in 2012 and 2014 (OMNRF, 2017).

Lake Ontario

2014 status of the Lake Ontario lower trophic levels

Soluble reactive phosphorus (SRP) concentrations have been stable in nearshore and offshore habitats since 1998 (0.4 – 3.3 μg/L). SRP concentrations were low in 2014; Apr/May – Oct mean values were <1 μg/L at most sites. Spring TP concentrations at individual sites exceeded 10 μg/L on occasion, but spring means were below the 10 μg/L target set by the Great Lakes Water Quality Agreement of 1978 for offshore waters of Lake Ontario. TP concentrations were low at both nearshore and offshore locations; Apr/May – Oct mean values from individual sites ranged from 4.6 – 9.1 μg/L. Spring TP has declined significantly in the longer data series (since 1981), but not since 1995 indicating stable nutrient loading into Lake Ontario for nearly two decades. It averaged 7.8 μg/L in the nearshore and 5.6 μg/L in the offshore in 2014. Chlorophyll-a and secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll-a declined significantly in both the short- (2000-2014) and long-term (1981-2014) time series at a rate of 4-6% per year. Nearshore chlorophyll-a increased after 2003 but then declined again after 2009. Epilimnetic chlorophyll-a averaged between 0.6 and 1.6 μg/L across sites with no difference between nearshore and offshore habitats. Apr/May – Oct Secchi depth ranged from 4.0 m to 10.8 m at individual sites and was higher in the offshore (average 9.1 m) than nearshore (5.9 m). In 2014, Apr/May – Oct epilimnetic zooplankton density, size, and biomass were not different between the offshore and the nearshore, and there were no differences in epilimnetic biomass between offshore and nearshore areas for any of the zooplankton groups. Zooplankton density and biomass peaked in September, an atypical pattern. This coincided with peaks in calanoid copepod, daphnid, and Holopedium biomass. Holopedium biomass in the nearshore increased significantly since 1995. The predatory cladoceran Cercopagis continued to be abundant in the summer, peaking at ~10 mg/m3in the offshore. Bythotrephes biomass was at its lowest level since 2005 in both offshore and nearshore habitats. Summer nearshore zooplankton density and biomass have declined significantly since 1995 at rates of 9-10% per year but have remained stable since 2005. However, bosminids and daphnids increased in 2013 and 2014. Summer offshore zooplankton density and biomass declined significantly in the long-term (since 1981), but remained at a lower stable level 2000 – 2014. A positive change point in 2013 is due to increases in bosminids, cyclopoid copepods, and daphnids. The observed decline in zooplankton biomass may be due in part to redistribution of zooplankton throughout the water column. Most of the zooplankton biomass was in the metalimnion and hypolimnion during the stratified period in 2014. By October, the bulk of the biomass was in the epilimnion.

Lake Ontario

2015 status of the Lake Ontario lower trophic levels

Offshore spring total phosphorus (TP) in 2015 was 4.2 μ g/L, the same as in 2014; this is lower than 2001 - 2013, but there is no significant time trend 2001 - 2015. Offshore soluble reactive phosphorus (SRP) was very low in 2015; Apr/May - Oct mean values were <1 μ g/L at most sites. SRP has been stable in nearshore and offshore habitats since 1998 (range, 0.4 – 3.3 μ g/L). TP concentrations were low at both nearshore and offshore locations (range 4.2 - 8.1 μ g/L), and TP and SRP concentrations were significantly higher in the nearshore as compared to the offshore (6.8 μ g/L vs 4.8 μ g/L, TP; 1.1 μ g/L vs 0.7 μ g/L, SRP). Chlorophyll- a and Secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll- a declined significantly 2000 - 2015. Nearshore chlorophyll- a increased 1995 - 2004 but then declined 2005 - 2015. Epilimnetic chlorophyll- a averaged between 0.9 and 1.9 1 μg/L across sites, and offshore concentrations (1.4 1 μg/L) were significantly higher than nearshore (1.1 μg/L). Summer Secchi depth increased significantly in the offshore 2000 -2015 and showed no trend in the nearshore, 1995 - 2015. Apr/May - Oct Secchi depth ranged from 5.0 m to 13.0 m at individual sites and was higher in the offshore (9.5 m) than nearshore (6.2 m). In 2015, Apr/May - Oct epilimnetic zooplankton density, size, and biomass were not different between the offshore and the nearshore, but cyclopoid biomass was higher in the offshore (8.3 mg/m 3 vs 2.0 mg/m 3 ) and Bythotrephes biomass was higher in the nearshore (0.17 mg/m 3 vs 0.04 mg/m 3 ). Zooplankton density and biomass peaked in September, an atypical pattern. This coincided with peaks in calanoid copepod, daphnid, and Holopedium Holopedium biomass in the nearshore has increased significantly since 1995. The predatory cladoceran Cercopagis continued to be abundant in summer in the nearshore (3.4 μ g/L) but not in the offshore (0.8 μ g/L). Bythotrephes biomass was very low (<0.3 μ g/L) in both nearshore and offshore habitats. Combined biomass of these predatory cladocerans in the offshore was the lowest recorded since 2001. Summer nearshore zooplankton density and biomass declined significantly 1995 - 2004 and then increased significantly 2005 – 2015. The decline was due to reductions in bosminids and cyclopoids and the increase was due mostly to a rebound in bosminids. Summer offshore zooplankton density and biomass increased significantly 2005 - 2015. The increase was due to an increase in bosminids and cyclopoids. In 2015, offshore summer epilimnetic zooplankton biomass was 52 mg/m 3 (2005 - 2014 mean=18 mg/m 3 ). Most zooplankton biomass was found in the metalimnion in July and in the hypolimnion in September. Cyclopoids and Limnocalanus dominated the metalimnion and Limnocalanus dominated the hypolimnion. Whole water column samples taken show a stable zooplankton biomass but changing community composition since 2010. Cyclopoids increased 2013 - 2015 and daphnids declined 2014 - 2015.

Lake Ontario

Bottom trawl assessment of Lake Ontario prey fishes

Managing Lake Ontario fisheries in an ecosystem-context requires prey fish community and population data. Since 1978, multiple annual bottom trawl surveys have quantified prey fish dynamics to inform management relative to published Fish Community Objectives. In 2017, two whole-lake surveys collected 341 bottom trawls (spring: 204, fall: 137), at depths from 8-225m, and captured 751,350 fish from 29 species. Alewife were 90% of the total fish catch while Deepwater Sculpin, Round Goby, and Rainbow Smelt comprised the majority of the remaining total catch (3.8, 3.1, and 1.1% respectively). The adult Alewife abundance index for US waters increased in 2017 relative to 2016, however the index for Canadian waters declined. Adult Alewife condition, assessed by the predicted weight of a 165 mm fish (6.5 inches), declined in 2017 from record high values observed in spring 2016. Spring 2017 Alewife condition was slightly less than the 10-year average, but the fall value was well below the 10-year average, likely due to increased Age-1 Alewife abundance. The Age-1 Alewife abundance index was the highest observed in 40 years, and 8-times higher than the previous year. The Age-1 index estimates Alewife reproductive success the preceding year. The warm summer and winter of 2016 likely contributed to the large year class. In contrast the relatively cool 2017 spring and cold winter may result in a lower than average 2017 year class. Abundance indices for Rainbow Smelt, Cisco, and Emerald Shiner either declined or remained at low levels in 2017. Pelagic prey fish diversity continues to be low since a single species, Alewife, dominates the catch. Deepwater Sculpin were the most abundant benthic prey fish in 2017 because Round Goby abundance declined sharply from 2016. Slimy Sculpin density continued to decline and the 2017 biomass index for US waters was the lowest ever observed. Prior to Round Goby proliferation, juvenile Slimy Sculpin comprised ~10% of the Slimy Sculpin catch, but since 2004, the percent of juveniles within the total catch is less than 0.5%, suggesting Round Goby are limiting Slimy Sculpin reproduction. Despite Slimy Sculpin declines, benthic prey fish community diversity has increased as Deepwater Sculpin and Round Goby comprise more of the community.

Lake Ontario

2017 Status of the Lake Ontario Lower Trophic Levels

Significant Findings for Year 2017: 1) Offshore spring total phosphorus (TP) in 2017 was 4.4 µg/L; values remained stable since 2001. Offshore soluble reactive phosphorus (SRP) remained low (1.1 µg/L) in 2017; Apr/May – Oct mean values have been stable in nearshore and offshore habitats since 1998 (range, 0.4 – 3.3 µg/L). Apr/May – Oct mean TP concentrations were low at both nearshore and offshore locations (range, 3.7 – 9.0 µg/L). TP and SRP concentrations were significantly higher in nearshore compared to offshore habitats (7.9 µg/L vs 5.3 µg/L, TP; 1.7 µg/L vs 1.0 µg/L, SRP). 2) Chlorophyll-a and Secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll-a was stable 2000 – 2017. Nearshore chlorophyll-a increased 1995 - 2004 but then declined 2005 – 2015; values were above the long-term mean for 2016 and 2017. In 2017, epilimnetic chlorophyll-a averaged between 1.2 and 2.6 μg/L across sites, and offshore and nearshore Apr/May – Oct concentrations were not significantly different. Summer Secchi depth increased significantly in the offshore 2005 – 2017 and in the nearshore 1995 – 2004. There was no trend in either habitat 1995 – 2017. Apr/May – Oct Secchi depth ranged from 4.4 m to 12.5 m at individual sites and was not significantly different between offshore (8.9 m) and nearshore (5.7 m) locations. 3) In 2017, nearshore summer zooplankton biomass was at an all-time low (10.3 mg/m3). Apr/May – Oct epilimnetic zooplankton density was not different between the offshore and the nearshore, but zooplankton size and biomass were significantly higher in the offshore. (0.7 mm vs 0.52 mm and 14.2 mg/m3 vs 7.7 mg/m3). Daphnid, calanoid copepod, and cyclopoid biomass were all higher in the offshore. 4) Peak (July) epilimnetic biomass of Cercopagis was 2.5 mg/m3 in the nearshore and 1.6 mg/m3 in the offshore. Peak (September/October) epilimnetic biomass of Bythotrephes was 0.9 mg/m3 in the nearshore and 0.5 mg/m3 in the offshore. Bythotrephes biomass has increased significantly in the nearshore, 1995 – 2017. 5) Summer nearshore zooplankton density and biomass declined significantly 1995 – 2004 and then remained stable 2005 – 2017. The decline was due mainly to reductions cyclopoids. 6) Summer epilimnetic offshore zooplankton density and biomass increased significantly 2005 – 2017, due mainly to increases in cyclopoids and daphnids. In 2017, offshore summer epilimnetic zooplankton biomass was 14 mg/m3—well below the mean from 2005 – 2016 (21 mg/m3). 7) Most offshore zooplankton biomass was found in the metalimnion in July and September, and in the hypolimnion in October. Limnocalanus and cyclopoids dominated the metalimnion in July while daphnids and cyclopoids comprised most of the biomass in September. Daphnids dominated the October hypolimnion. Whole water column samples show a declining zooplankton biomass 2015 – 2017. Bythotrephes biomass in whole water column tows is the highest it has been, 2010 – 2017.

Lake Ontario