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Appendix C: Central sands lakes study technical report: Modeling documentation

This report provides the necessary documentation of the numerical models developed for the Central Sands Lake study in central Wisconsin and will be included as a technical appendix in the report to the Wisconsin State Legislature by the Wisconsin Department of Natural Resources (WDNR) in response to 2017 Wisconsin Act 10. This legislation directed WDNR to determine whether existing and potential groundwater withdrawals are causing or are likely to cause significant reduction of mean seasonal water levels at Pleasant Lake, Long Lake, and Plainfield Lake (s. 281.34(7m)(2)(b), Wis. Stats.) in Waushara County, Wisconsin. To evaluate the potential hydrologic connection between groundwater withdrawals and the nearby study lakes, hydrologic models were created that focused on the lakes of interest and yet were large enough to cover a broad enough region to extend to the major hydrologic boundaries of the natural flow system. The areas near the lakes require finer-scale grid discretization (or spacing) to better represent the lakes and streams in the model, but also need to cover a large enough area to include the groundwater withdrawal locations that have the potential to cause reduction in water levels in the lakes. To accomplish these goals, three groundwater models were created: a regional model extending to major hydrologic boundaries; and two inset models, inheriting boundaries from the regional model but focused near the lakes. Each of the inset models, in turn, included a detailed area close to the lakes surrounded by an area at the same spatial scale as the regional model (Figure 1). To support WDNR in evaluating the connection between groundwater withdrawals and lake levels, a representative time period was required over which to compare land use with and without irrigated agriculture and for WDNR to evaluate potential lake stage and flux changes related to irrigated agriculture. WDNR chose the climate period of 1981-2018 to be representative of a typical period and provided two land use scenarios—one with no irrigated agriculture and one with assumed crop rotations similar to current conditions—to simulate with groundwater models to, then, compare lake responses with. As a result, simulations over this climate record are not intended to recreate the history of 1981-2018 because land use changed over that time. These runs are, instead, intended to provide a basis on which to compare land use with and without irrigation-related groundwater withdrawals based on the current arrangement of land use and a varied climatic record. Groundwater withdrawals focused on irrigated-agriculture-related water use because greater than 95% of groundwater withdrawal in the two inset models around the study lakes is for irrigated agriculture water use. The period of 2012-2018 was used for parameter estimation (synonymously referred to as “history matching”) for the groundwater models. This time period was chosen because it includes the most complete water use records to simulate groundwater withdrawals. History matching was performed using groundwater elevations, lake stages, and streamflow observations over the 2012-2018 time period and processed observations derived from those raw data. Climatic data were incorporated into the model using a soil-water balance approach. A soil water balance model was constructed at the scale of the regional groundwater model to both calculate recharge based on land use and climate, and in the long-term climate-period runs, to estimate water use required by irrigated agriculture to apply as well boundary conditions in the groundwater model in the absence of reported water use values over that period.

Wisconsin

Central Beaufort Sea Wave and Hydrodynamic Modeling Study; Report 2: Modeled waves, hydrodynamics, and sediment transport within Foggy Island Bay

Renewed interest in nearshore oil exploration and production in the shallow waters of the Central Beaufort Sea Shelf has created a need to advance our understanding of the past, current, and future atmospheric and oceanographic conditions that affect existing and planned infrastructure and nearshore ecosystems. At the time of writing this report, Hilcorp Alaska LLC has received BOEM approval for an oil and gas Development and Production Plan (DPP) that includes the construction of the Liberty Drilling Island (LDI) in Foggy Island Bay, situated within Stefansson Sound circa 30 km east of Prudhoe Bay (Figure 1.1). The aim of this study is to investigate how longer periods of open water (defined as < 15% ice cover), decreased sea ice cover, and changes in ocean and atmospheric conditions might affect wave and storm surge conditions, sediment transport patterns, and coastal erosion rates within Foggy Island Bay as well as the modeled influence of the offshore artificial island on sediment transport patterns.

Alaska

Central Beaufort Sea Wave and Hydrodynamic Modeling Study--Report 1: Field measurements and model development

Renewed interest in nearshore oil exploration and production in the shallow waters of the Central Beaufort Sea Shelf has created a need to advance our understanding of the past, current, and future atmospheric and oceanographic conditions that affect existing and planned infrastructure and nearshore ecosystems. At the time of writing this report, Hilcorp Alaska, LLC, has received BOEM approval for an oil and gas Development and Production Plan (DPP) that includes the construction of the Liberty Drilling Island (LDI) in Foggy Island Bay, situated within Stefansson Sound circa 30 km east of Prudhoe Bay (Figure 1.1). The aim of this study is to investigate how longer periods of open water (defined as < 15% ice cover), decreased sea ice cover, and changes in ocean and atmospheric conditions might affect wave and storm surge conditions, sediment transport patterns, and coastal erosion rates within Foggy Island Bay as well as the modeled influence of the offshore artificial island on sediment transport patterns.

Foggy Island Bay

Vegetation model technical report

The vegetation model (LAVegMod) described in this appendix is the next generation of a similar model (habitat switching module) initially developed as part of the Louisiana Coastal Area study. LAVegMod divides the original 5-habitat model for the Louisiana coast into 19 vegetation types. LAVegMod provides longer estimates of interannual variation in aboveground biomass; however, biomass varies with vegetation type. The model is intended as a tool for protection and restoration planning that provides repeatable estimates of the changes in species composition based on changes in hydrology and wetland area. This tool is dependent on other models that forecast changes in hydrology and wetland area.

Louisiana

Hydrologic, water operations, reservoir temperature, river temperature, sediment transport, habitat, and fish population modeling for the Trinity River Water Management Plan

Humboldt County is developing a Water Management Plan that will describe a range of proposed annual releases from Trinity Reservoir consistent with the 1959 water delivery contract between Humboldt County and the U.S. Bureau of Reclamation (Reclamation). The 1959 contract states that Reclamation shall release not less than an annual quantity of 50,000 acre-feet into the Trinity River for the beneficial use of Humboldt County and other downstream users (Contract Water). The Water Management Plan will outline how Contract Water should be released for the benefit of fisheries in the Trinity River and lower Klamath River, with the primary goal of expanding a harvestable surplus of Tribal, recreational, and commercial fisheries. A set of annual Contract Water release scenarios were developed during five workshops conducted in 2022 and 2023 with interested parties including Humboldt County, state and federal resource agencies, tribal representatives, Reclamation, and the U.S. Department of the Interior Solicitor’s office. A suite of modeling and technical tools was used to analyze annual conditions with and without Contract Water releases. This Modeling Report describes the modeling tools used to assess Contract Water release scenarios, including CalSim II, HEC-5Q, RBM10, sediment transport models, Chinook Salmon habitat models, and the Stream Salmonid Simulator. Results from all models are summarized to provide a comparative overview of modeled release scenarios to modeled baseline conditions. Mean annual Contract Water release scenarios ranged from 50,000 acre-feet to 170,000 acre-feet, and varied in timing, magnitude, and duration, though all releases were made between October and April. As shown in Table ES-1, a key finding of this modeling report is Contract Water releases that had the greatest modeled increase in Chinook Salmon abundance relative to baseline conditions included those that released 50,000 acre-feet in the fall period from October through December as pulse flows or baseflows, and those that released 170,000 acre-feet from October through April as a combination of pulse flows and baseflows. Modeled beneficial effects on populations were primarily due to either (1) increases in habitat area during the spawning life stage in October through December, which decreased redd superimposition (e.g., the process of a later arriving spawner building a redd on top of an existing redd) and improved egg survival, or (2) increases in flow during the fry emergence and juvenile rearing life stage in March through April, which increased the fry and parr carrying capacity (e.g., the upper limit for the number of fry or parr that a habitat unit can support) of individual habitat units. Another key finding of this report is all Contract Water scenarios that released at least 50,000 acre-feet annually from Trinity Reservoir had similar effects on Trinity Reservoir storage, Central Valley Project (CVP) storage, CVP contract water deliveries, and Sacramento River water temperatures. Whether these scenarios were released annually as a fall baseflow, fall pulse flow, spring pulse flow, or spring baseflow, they all resulted in similar storage patterns in Trinity Reservoir – an annual reduction in storage relative to the baseline that was relatively small in wetter years and larger in drier years. As a result of lower Trinity Storage levels, Trinity River Division (TRD) exports to the CVP were reduced. Because the timing of exports is similar each year, reaching a peak in July through September, the reduction to exports occurred at the same time each year, independent of Contract Water release timing, resulting in similar storage, CVP delivery, and water temperature effects in the Sacramento River basin portion of the CVP. The water temperature effects on the Sacramento River were limited to the months of July and August, relatively minor, and were primarily attributed to changes in storage, release magnitude, and release temperature from Lake Shasta, and not due explicitly to inflows from the TRD.

California

2022 Crustal Deformation Modeling Workshop Report

The 2022 Crustal Deformation Modeling Workshop was held June 20–24 at the Colorado School of Mines in Golden, Colorado. The workshop included two days of tutorials on the use of the open-source software PyLith for crustal deformation modeling followed by three days of science talks and discussions. The workshop focused on three primary themes: (1) Earthquake cycle modeling; (2) Inversions for fault slip; and (3) Faulting, fluids, and surface loading. The talks highlighted how computational models provide insight into intriguing observations of Earth and planetary behavior. These included (1) earthquake synchronization of rupture patches due to their close proximity to each other, (2) the influence of fault geometry and damage zones on hypocenter depth and rupture propagation, (3) a lack of steady-state faulting behavior due to long time scales for grain size evolution in the mid-crust, (4) crustal deformation due to tidal, hydrological, and atmospheric loads, and (5) plumes of gas and icy particles due to tidal driven faulting on Enceladus (one of Saturn’s moons). The talks also described new computational modeling capabilities for incorporating complex geologic structure into Bayesian inversions for fault slip and efficient implementation of earthquake cycle models using a symmetric interior discontinuous Galerkin method. The complete agenda is available on the Computational Infrastructure for Geodynamic (CIG) website.

Report

2024 Crustal Deformation Modeling Workshop report

The 2024 Crustal Deformation Modeling Workshop was held June 10–14 at the Colorado School of Mines. The workshop included two days of tutorials on using PyLith for crustal deformation modeling, followed by three days of science talks and discussions. The workshop focused on four primary themes: ● Constraining long-term fault slip rates and their uncertainties using geodetic and geologic data; ● Earthquake cycle modeling with a focus on constraining models using seismic and geodetic data; ● Interaction of fluids and faulting; and ● Separating contributions of surface loading and tectonic loading in crustal deformation. The complete agenda is available on the CIG website.

Conference Paper

Digital data sets that describe aquifer characteristics of the alluvial and terrace deposits along the Beaver-North Canadian River from the panhandle to Canton Lake in northwestern Oklahoma

ARC/INFO export and nonproprietary format files This diskette contains digitized aquifer boundaries and maps of of hydraulic conductivity, recharge, and ground-water level elevation contours for the alluvial and terrace deposits along the alluvial and terrace deposits along the Beaver-North Canadian River from the panhandle to Canton Lake in northwestern Oklahoma. Ground water in 830 square miles of the Quaternary-age alluvial and terrace aquifer is an important source of water for irrigation, industrial, municipal, stock, and domestic supplies. The aquifer consists of poorly sorted, fine to coarse, unconsolidated quartz sand with minor amounts of clay, silt, and basal gravel. The hydraulically connected alluvial and terrace deposits unconformably overlie the Tertiary-age Ogallala Formation and Permian-age formations. Most of the lines in the aquifer boundary and recharge data sets and some of the lines in the hydraulic conductivity data set were extracted from a published digital surficial geology data set based on a scale of 1:250,000. The ground-water elevation contours and some of the lines for the aquifer boundary, hydraulic conductivity, and recharge data sets were digitized from a ground-water modeling report about the aquifer published at a scale of 1:250,000. The hydraulic conductivity values and recharge rates also are from the ground-water modeling report. The data sets are provided in both nonproprietary and ARC/INFO export file formats. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Oklahoma

Digital data sets that describe aquifer characteristics of the alluvial and terrace deposits along the Cimarron River from Freedom to Guthrie in northwestern Oklahoma

ARC/INFO export and nonproprietary format files This diskette contains digitized aquifer boundaries, maps of hydraulic conductivity, recharge, and ground-water level elevation contours for the alluvial and terrace deposits along the Cimarron River from Freedom to Guthrie in northwestern Oklahoma. Ground water in 1,305 square miles of Quaternary-age alluvial and terrace deposits along the the Cimarron River from Freedom to Guthrie is an important source of water for irrigation, industrial, municipal, stock, and domestic supplies. Alluvial and terrace deposits are composed of interfingering lenses of clay, sandy clay, and cross-bedded poorly sorted sand and gravel. The aquifer is composed of hydraulically connected alluvial and terrace deposits that unconformably overlie the Permian-age Formations. The aquifer boundaries are from a ground-water modeling report on the alluvial and terrace aquifer along the Cimarron River from Freedom to Guthrie in northwestern Oklahoma and published digital surficial geology data sets. The aquifer boundary data set was created from digital geologic data sets from maps published at a scale of 1:250,000. The hydraulic conductivity values, recharge rates, and ground-water level elevation contours are from the ground-water modeling report. Water-level elevation contours were digitized from a map at a scale of 1:250,000. The maps were published at a scale of 1:900,000. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Oklahoma

Application of a Weighted Regression Model for Reporting Nutrient and Sediment Concentrations, Fluxes, and Trends in Concentration and Flux for the Chesapeake Bay Nontidal Water-Quality Monitoring Network, Results Through Water Year 2012

In the Chesapeake Bay watershed, estimated fluxes of nutrients and sediment from the bay&rsquo;s nontidal tributaries into the estuary are the foundation of decision making to meet reductions prescribed by the Chesapeake Bay Total Maximum Daily Load (TMDL) and are often the basis for refining scientific understanding of the watershed-scale processes that influence the delivery of these constituents to the bay. Two regression-based flux and trend estimation models, ESTIMATOR and Weighted Regressions on Time, Discharge, and Season (WRTDS), were compared using data from 80 watersheds in the Chesapeake Bay Nontidal Water-Quality Monitoring Network (CBNTN). The watersheds range in size from 62 to 70,189 square kilometers and record lengths range from 6 to 28 years. ESTIMATOR is a constant-parameter model that estimates trends only in concentration; WRTDS uses variable parameters estimated with weighted regression, and estimates trends in both concentration and flux. WRTDS had greater explanatory power than ESTIMATOR, with the greatest degree of improvement evident for records longer than 25 years (30 stations; improvement in median model R 2 = 0.06 for total nitrogen, 0.08 for total phosphorus, and 0.05 for sediment) and the least degree of improvement for records of less than 10 years, for which the two models performed nearly equally. Flux bias statistics were comparable or lower (more favorable) for WRTDS for any record length; for 30 stations with records longer than 25 years, the greatest degree of improvement was evident for sediment (decrease of 0.17 in median statistic) and total phosphorus (decrease of 0.05). The overall between-station pattern in concentration trend direction and magnitude for all constituents was roughly similar for both models. A detailed case study revealed that trends in concentration estimated by WRTDS can operationally be viewed as a less-constrained equivalent to trends in concentration estimated by ESTIMATOR. Estimates of annual mean flow-adjusted (ESTIMATOR) and flow-normalized (WRTDS) concentration for years initially constituting the end of a water-quality record showed a similar degree of variability as data for additional years were incrementally added and the initial estimates &ldquo;aged.&rdquo; On the basis of the results of this broad comparison of the two models, the U.S. Geological Survey is adopting WRTDS as the primary model for estimating constituent fluxes and trends throughout the CBNTN. Nutrient and sediment flux and trend estimates, based on WRTDS, are summarized narratively and tabulated in appendixes for all stations for which fluxes or trends were reported through water year 2012. WRTDS also was used to explore the sensitivity of flux and trend estimates to three data-quality issues common in many large-scale monitoring networks and evident in some of the CBNTN records. The potential effects of inconsistency in annual sampling effort and inconsistency in storm sampling effort were explored by way of a subsampling experiment using eight of the most densely sampled long-term (1985&ndash;2012) stations in the CBNTN as baseline datasets. From each dataset, a set of 10 &ldquo;design guideline&rdquo; subsamples was selected, consisting of 12 monthly samples and 8 targeted storm samples per year. The selection was conducted in a manner that preserved the overall intensity of storm sampling in the baseline data. These 10 subsamples were further manipulated to create &ldquo;heterogeneous&rdquo; subsamples by removing storm samples prior to 2003. The maximum relative difference between flow-normalized flux estimated in a single year from any of the 10 design guideline subsamples and values estimated in the corresponding year from baseline data was smallest for dissolved inorganic nitrogen (median of 8 stations = 6 percent of baseline estimate), but more appreciable for total phosphorus and sediment (medians of 22 and 32 percent, respectively). The maximum relative difference between flow-normalized flux estimated from from the 10 heterogeneous subsamples and values estimated in the corresponding year from baseline data was more pronounced, with medians for 8 stations of 15, 30, and 53 percent of the corresponding baseline estimates for dissolved inorganic nitrogen, total phosphorus, and sediment, respectively. The worst-case maximum relative differences between flow-normalize flux estimated in a single year from the 10 heterogeneous subsamples and values estimated in the corresponding year from baseline data were 25 percent for dissolved inorganic nitrogen, 37 percent for total phosphorus, and 250 percent for sediment. The results for the heterogeneous subsamples indicate that changes in storm sampling frequency can result in appreciable distortion of estimated trends in flow-normalized flux, especially for total phosphorus and sediment. Trend lines estimated from heterogeneous subsamples tended to converge with the trend lines estimated from baseline data after 2003. In contrast, 2003&ndash;12 trends based on subsamples truncated by discarding all data prior to the induced heterogeneity in 2003 showed appreciable biases and differences in slope, relative to the corresponding 2003&ndash;12 segment of the trend computed from the design guideline subsamples. Overall, the results indicate that for particulate constituents, load and trend estimates computed using long-term records recently converted to CBNTN design guideline sampling protocols will be most reliable if the trend is computed using the entire record, but reported only for the period that design guideline sampling protocols were followed. Inconsistencies related to changing laboratory methods were also examined via two manipulative experiments. In the first experiment, increasing and decreasing &ldquo;stair-step&rdquo; patterns of changes in censoring level, overall representing a factor-of-five change in the laboratory reporting limit, were artificially imposed on a 27-year record with no censoring and a period-of-record concentration trend of &ndash;68.4 percent. Trends estimated on the basis of the manipulated records were broadly similar to the original trend (&ndash;63.6 percent for decreasing censoring levels and &ndash;70.3 percent for increasing censoring levels), lending a degree of confidence that the survival regression routines upon which WRTDS is based are generally robust to data censoring. The second experiment considered an abrupt disappearance of low-concentration observations of total phosphorus, associated with a laboratory method change and not reflected through censoring, near the middle of a 28-year record. By process of elimination, an upward shift in the estimated flow-normalize concentration trend line around the same time was identified as a likely artifact resulting from the laboratory method change, although a contemporaneous change in watershed processes cannot be ruled out. Decisions as to how to treat records with potential sampling protocol or laboratory methods-related artifacts should be made on a case-by-case basis, and trend results should be appropriately qualified.

Maryland, New York, Pennsylvania, Virginia

A preliminary report on model studies of magnetic anomalies of three-dimensional bodies

Model experiments were made to devise a rapid method for calculating magnetic anomalies of three-dimensional structures. The magnetic fields of the models were determined using the equipment at the Naval Ordnance Laboratory, White Oaks, Md. An irregularly shaped mass was approximated by an array of prismatic rectangular slabs of constant thickness and varying horizontal dimensions. Contoured maps are being prepared for these magnetic models at different depths and for several magnetic inclinations. The fields of these three-dimensional structures are obtained by superimposing the appropriate contoured maps and adding numerically the effects at each point. The equipment and laboratory methods are described. Theoretical and practical examples are given.

Geophysics

Mass and body-dimension relationships of polar bears in northern Alaska

Models developed from morphometric parameters are useful for estimating body mass (M) of captured wild ursids. The accuracy of those models, however, may depend on sex, season, and geographic location of the population. We tested the suitability of reported models to predict mass of polar bears ( Ursus maritimus ) captured in northern Alaska, but found that models developed for other populations performed poorly. Hence, we derived new models from field measurements of axillary girth (AG), straight-line body length (SLBL), condylobasal length (CL), and zygomatic width (ZW). Our equations accurately predicted body mass for polar bears captured during spring and autumn. The equation for spring-captured polar bears was M = 0.000078 * AG 1.6026 * SLBL 1.3579 (R 2 =0.97), while the equation for autumn-captured polar bears was M = 0.000250 * AG 1.4967 * SLBL 1.2468 (R 2 =0.97). Our results suggest that investigators should verify the accuracy of reported equations when applied to each situation and if necessary, develop models specific for the population in question.

Alaska

Digital data sets that describe aquifer characteristics of the alluvial and terrace deposits along the North Canadian River from Oklahoma City to Eufaula Lake in east-central Oklahoma

ARC/INFO export and nonproprietary format files This diskette contains digitized aquifer boundaries and maps of of hydraulic conductivity, recharge, and ground-water level elevation contours for the alluvial and terrace deposits along the North Canadian River from Oklahoma City to Eufaula Lake in east-central Oklahoma. Ground water in 710 square miles of Quaternary-age alluvial and terrace deposits along the North Canadian River is an important source of water for irrigation, industrial, municipal, stock, and domestic supplies. The aquifer, composed of alluvial and terrace deposits, consists of sand, silt, clay, and gravel. The aquifer is underlain and in hydraulic connection with the upper zone of the Permian-age Garber-Wellington aquifer and the Pennsylvanian-age Ada-Vamoosa aquifer. Most of the lines in the four digital data sets were digitized from a published ground-water modeling report but portions of the aquifer boundary data set was extracted from published digital geologic data sets. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Oklahoma

Connecticut Highlands technical report— Documentation of the regional rainfall-runoff model

This report provides the supporting data and describes the data sources, methodologies, and assumptions used in the assessment of existing and potential water resources of the Highlands of Connecticut and Pennsylvania (referred to herein as the &ldquo;Highlands&rdquo;). Included in this report are Highlands groundwater and surface-water use data and the methods of data compilation. Annual mean streamflow and annual mean base-flow estimates from selected U.S. Geological Survey (USGS) gaging stations were computed using data for the period of record through water year 2005. The methods of watershed modeling are discussed and regional and sub-regional water budgets are provided. Information on Highlands surface-water-quality trends is presented. USGS web sites are provided as sources for additional information on groundwater levels, streamflow records, and ground- and surface-water-quality data. Interpretation of these data and the findings are summarized in the Highlands study report.

Connecticut

Evaluation of effects of changes in canal management and precipitation patterns on salinity in Biscayne Bay, Florida, using an integrated surface-water/groundwater model

Biscayne National Park, located in Biscayne Bay in southeast Florida, is one of the largest marine parks in the country and sustains a large natural marine fishery where numerous threatened and endangered species reproduce. In recent years, the bay has experienced hypersaline conditions (salinity greater than 35 practical salinity units) of increasing magnitude and duration. Hypersalinity events were particularly pronounced during April to August 2004 in nearshore areas along the southern and middle parts of the bay. Prolonged hypersaline conditions can cause degradation of water quality and permanent damage to, or loss of, brackish nursery habitats for multiple species of fish and crustaceans as well as damage to certain types of seagrasses that are not tolerant of extreme changes in salinity. To evaluate the factors that contribute to hypersalinity events and to test the effects of possible changes in precipitation patterns and canal flows into Biscayne Bay on salinity in the bay, the U.S. Geological Survey constructed a coupled surface-water/groundwater numerical flow model. The model is designed to account for freshwater flows into Biscayne Bay through the canal system, leakage of salty bay water into the underlying Biscayne aquifer, discharge of fresh and salty groundwater from the Biscayne aquifer into the bay, direct effects of precipitation on bay salinity, indirect effects of precipitation on recharge to the Biscayne aquifer, direct effects of evapotranspiration (ET) on bay salinity, indirect effects of ET on recharge to the Biscayne aquifer, and maintenance of mass balance of both water and solute. The model was constructed using the Flow and Transport in a Linked Overland/Aquifer Density Dependent System (FTLOADDS) simulator, version 3.3, which couples the two-dimensional, surface-water flow and solute-transport simulator SWIFT2D with the density-dependent, groundwater flow an solute-transport simulator SEAWAT. The model was calibrated by a trial-and-error method to fit observed groundwater heads, estimated base flow, and measured bay salinity and temperatures from 1996 to 2004, as well as the location of the freshwater-saltwater interface in the aquifer, by adjusting ET rate limiters, canal vertical hydraulic conductance, leakage rate coefficients (transition-layer thickness and hydraulic conductivity), Manning's n value, and delineation of rainfall zones. Although flow budget calculations indicate that precipitation, ET, and groundwater flux into the bay represent a small portion of the overall budget, these factors may be important in controlling salinity in some parts of the bay, for example the southern parts of the bay where the canal system is not extensively developed or controlled. The balance of precipitation and ET during the wet season generally results in a reduction of bay salinity, whereas the balance of precipitation and ET during the dry season generally results in an increase in bay salinity. During years when wet season precipitation is lower than average, for example less than 70 percent total precipitation for an average year, ET could outweigh precipitation over the bay for essentially the entire year. Hypersaline conditions are prone to occur near the end of the dry season because precipitation rates are generally lower, canal discharge rates (which are strongly correlated to precipitation rates) are also generally lower, and ET rates are higher than during the rest of the year. The hypersalinity event of 2004 followed several years of relatively low precipitation and correspondingly reduced canal structure releases and was unusually extensive, continuing into July. Thus, hypersalinity is ultimately the result of a cumulative deficit of precipitation. The model was used to test the effects of possible changes in canal flux and precipitation. Simulation results showed that by increasing, reducing, or modifying canal discharge rates, the effects on salinity in the bay were more pronounced in the northern part of the bay where there are more canals and canal-control structures. By doubling and halving precipitation, the effects on bay salinity were more pronounced in the southern part of the bay than in the northern part of the bay where there are fewer canals and canal-control structures. The model is designed to quantify factors that contribute to hypersaline conditions in Biscayne Bay and may be less appropriate for addressing other issues or examining conditions substantially different from those described in this report. Model results must be interpreted in light of model limitations, which include representation of the system and conceptual model, uncertainty in physical properties used to describe the system or processes, the scale and discretization of the system, and representation of the boundary conditions.

Florida

Documentation for the MODFLOW 6 Groundwater Flow Model

This report documents the Groundwater Flow (GWF) Model for a new version of MODFLOW called MODFLOW 6. The GWF Model for MODFLOW 6 is based on a generalized control-volume finite-difference approach in which a cell can be hydraulically connected to any number of surrounding cells. Users can define the model grid using one of three discretization packages, including (1) a structured discretization package for defining regular MODFLOW grids consisting of layers, rows, and columns, (2) a discretization by ver­tices package for defining layered unstructured grids consisting of layers and cells, and (3) a general unstruc­tured discretization package for defining flexible grids comprised of cells and their connection properties. For layered grids, a new capability is available for removing thin cells and vertically connecting cells overlying and underlying the thin cells. For complex problems involving water-table conditions, an optional Newton-Raphson formulation, based on the formulations in MODFLOW-NWT and MODFLOW-USG, can be acti­vated. Use of the Newton-Raphson formulation will often improve model convergence and allow solutions to be obtained for difficult problems that cannot be solved using the traditional wetting and drying approach. The GWF Model is divided into “packages,” as was done in previous MODFLOW versions. A package is the part of the model that deals with a single aspect of simulation. Packages included with the GWF Model include those related to internal calculations of groundwater flow (discretization, initial conditions, hydraulic conduc­tance, and storage), stress packages (constant heads, wells, recharge, rivers, general head boundaries, drains, and evapotranspiration), and advanced stress packages (streamflow routing, lakes, multi-aquifer wells, and unsaturated zone flow). An additional package is also available for moving water available in one package into the individual features of the advanced stress packages. The GWF Model also has packages for obtaining and controlling output from the model. This report includes detailed explanations of physical and mathematical concepts on which the GWF Model and its packages are based. Like its predecessors, MODFLOW 6 is based on a highly modular structure; however, this structure has been extended into an object-oriented framework. The framework includes a robust and generalized numeri­cal solution object, which can be used to solve many different types of models. The numerical solution object has several different matrix preconditioning options as well as several methods for solving the linear system of equations. In this new framework, the GWF Model itself is an object as are each of the GWF Model packages. A benefit of the object-oriented structure is that multiple objects of the same type can be used in a single sim­ulation. Thus, a single forward run with MODFLOW 6 may contain multiple GWF Models. GWF Models can be hydraulically connected using GWF-GWF Exchange objects. Connecting GWF models in different ways permits the user to utilize a local grid refinement strategy consisting of parent and child models or to couple adjacent GWF Models. An advantage of the approach implemented in MODFLOW 6 is that multiple models and their exchanges can be incorporated into a single numerical solution object. With this design, models can be tightly coupled at the matrix level.

Techniques and Methods