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Results for “Journal of General Microbiology”

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5 recordsLinked to original sources
USGS1965

Characteristics and identification of oxidative Pseudomonads isolated from diseased fish

Several characteristics of 20 strains of oxidative pseudomonads, all but one of which were isolated from freshwater fish, were determined. All strains oxidized glucose and gluconate, produced NH 3 from 1 % peptone, grew at 6, 12, 20 and 30° and produced cytochrome oxidase. Lipase was produced by 17 of the strains, while 15 produced gelatinase, and 16 produced fluorescent pigment. These and other characteristics used to identify fish-spoilage pseudomonads are also useful for identification of fish-pathogenic pseudomonads. Species determinations from the present data were not attempted. However, from previously published data on speciation of Pseudomonas , most of the 20 strains appeared to be closely related to or identical with P. fluorescens .

Journal of General Microbiology↗
USGS2010

Arsenic Geochemistry and Hydrostratigraphy in Midwestern U.S. Glacial Deposits

Arsenic concentrations exceeding the U.S. EPA's 10 ??g/L standard are common in glacial aquifers in the midwestern United States. Previous studies have indicated that arsenic occurs naturally in these aquifers in association with metal-(hydr)oxides and is released to groundwater under reducing conditions generated by microbial oxidation of organic matter. Despite this delineation of the arsenic source and mechanism of arsenic mobilization, identification of arsenic-impacted aquifers is hindered by the heterogeneous and discontinuous nature of glacial sediments. In much of the Midwest, the hydrostratigraphy of glacial deposits is not sufficiently characterized to predict where elevated arsenic concentrations are likely to occur. This case study from southeast Wisconsin presents a detailed characterization of local stratigraphy, hydrostratigraphy, and geochemistry of the Pleistocene glacial deposits and underlying Silurian dolomite. Analyses of a single core, water chemistry data, and well construction reports enabled identification of two aquifers separated by an organic-rich aquitard. The upper, unconfined aquifer provides potable water, whereas arsenic generally exceeds 10 ??g/L in the deeper aquifer. Although coring and detailed hydrostratigraphic characterization are often considered impractical, our results demonstrate that a single core improved interpretation of the complex lithology and hydrostratigraphy. This detailed characterization of hydrostratigraphy facilitated development of well construction guidelines and lays the ground work for further studies of the complex interactions among aquifer sediments, hydrogeology, water chemistry, and microbiology that lead to elevated arsenic in groundwater. Copyright ?? 2009 The Author(s). Journal compilation ?? 2009 National Ground Water Association.

Ground Water↗
USGS2000

Defining anural malformations in the context of a developmental problem

This paper summarizes terminology and general concepts involved in animal development for the purpose of providing background for the study and understanding of frog malformations. The results of our radiographic investigation of rear limb malformations in Rana pipiens provide evidence that frog malformations are the product of early developmental errors. Although bacteria, parasites and viruses were identified in these metamorphosed frogs, the relevant window to look for the teratogenic effect of these agents is in the early tadpole stage during limb development. As a result, our microbiological findings must be regarded as inconclusive relative to determining their contribution to malformations because we conducted our examinations on metamorphosed frogs not tadpoles. Future studies need to look at teratogenic agents (chemical, microbial, physical or mechanical) that are present in the embryo, tadpole, and their environments at the stages of development that are relevant for the malformation type. The impact of these teratogenic agents then needs to be assessed in appropriate animal models using studies that are designed to mimic field conditions. The results of these laboratory tests should then be analyzed in such a way that will allow comparison with the findings in the wild-caught tadpoles and frogs.

Journal of the Iowa Academy of Science↗
USGS2008

Methanogenic pathways of coal-bed gas in the Powder River Basin, United States: The geologic factor

Coal-bed gas of the Tertiary Fort Union and Wasatch Formations in the Powder River Basin in Wyoming and Montana, U.S. was interpreted as microbial in origin by previous studies based on limited data on the gas and water composition and isotopes associated with the coal beds. To fully evaluate the microbial origin of the gas and mechanisms of methane generation, additional data for 165 gas and water samples from 7 different coal-bed methane-bearing coal-bed reservoirs were collected basinwide and correlated to the coal geology and stratigraphy. The C1/(C2 + C3) ratio and vitrinite reflectance of coal and organic shale permitted differentiation between microbial gas and transitional thermogenic gas in the central part of the basin. Analyses of methane ??13C and ??D, carbon dioxide ??13C, and water ??D values indicate gas was generated primarily from microbial CO2 reduction, but with significant gas generated by microbial methyl-type fermentation (aceticlastic) in some areas of the basin. Microbial CO2 reduction occurs basinwide, but is generally dominant in Paleocene Fort Union Formation coals in the central part of the basin, whereas microbial methyl-type fermentation is common along the northwest and east margins. Isotopically light methane ??13C is distributed along the basin margins where ??D is also depleted, indicating that both CO2-reduction and methyl-type fermentation pathways played major roles in gas generation, but gas from the latter pathway overprinted gas from the former pathway. More specifically, along the northwest basin margin gas generation by methyl-type fermentation may have been stimulated by late-stage infiltration of groundwater recharge from clinker areas, which flowed through highly fractured and faulted coal aquifers. Also, groundwater recharge controlled a change in gas composition in the shallow Eocene Wasatch Formation with the increase of nitrogen and decrease of methane composition of the coal-bed gas. Other geologic factors, such as burial, thermal and maturation history, lateral and vertical continuity, and coalification of the coal beds, also played a significant role in controlling methanogenic pathways and provided new perspectives on gas evolution and emplacement. The early-stage gas produced by CO2 reduction has mixed with transitional thermogenic gas in the deeper, central parts of the Powder River Basin to form 'old' gas, whereas along the basin margins the overprint of gas from methyl-type fermentation represents 'new' gas. Thus, a clear understanding of these geologic factors is necessary to relate the microbiological, biogeochemical, and hydrological processes involved in the generation of coal-bed gas.

International Journal of Coal Geology↗