USGS ScienceSearch

SEARCH · USGS Science

Results for “Historical Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 recordsLinked to original sources

Historical wetlands in Oregon's Willamette Valley: Implications for restoration of winter waterbird habitat

Before agricultural expansion in the 19th century, river valleys of North America supported expanses of wetland habitat. In restoring these landscapes, it is important to understand their historical condition and biological function. Synthesizing historical primary accounts (from explorers, travelers, settlers, and farmers) with contemporary knowledge of these wetland systems, we developed a profile of the wetlands and their use by nonbreeding waterbirds (e.g., waterfowl, wading birds, and shorebirds) within the Willamette Valley, Oregon, ca. 1840. We found evidence for three types of wetlands used by non-breeding waterbirds in fall, winter, and spring: emergent wetlands, riverine wetlands, and wetland prairie. The most extensive wetland type was wetland prairie, which functioned as fall/winter habitat for waterbirds, but only while native Kalapuyans managed the region with fire. Since the mid-1800s, four species, in particular, have decreased their use of the Willamette Valley: trumpeter swan (Cygnus buccinator), snow goose (Chen caerulescens), sandhill crane (Grus canadensis), and long-billed curlew (Numenius americanus). Information suggests that ca. 1840, waterbirds and their habitats were more abundant in the Willamette Valley than today. Restoration of the Willamette Valley landscape is warranted, and today's agricultural wetlandsa??former wetland prairiea??hold highest restoration potential.

Wetlands

Potential toxicity of complex mixtures in surface waters from a nationwide survey of United States streams: Identifying in vitro bioactivities and causative chemicals

While chemical analysis of contaminant mixtures remains an essential component of environmental monitoring, bioactivity-based assessments using in vitro systems increasingly play a role in the detection of biological effects. Historically, in vitro assessments focused on a few biological pathways, e.g., aryl hydrocarbon receptor (AhR) or estrogen receptor (ER) activities. High-throughput screening (HTS) technologies have greatly increased the number of biological targets and processes that can be rapidly assessed. Here we screened extracts of surface waters from nationwide survey of United States (US) streams for bioactivities associated with 69 different endpoints using two multiplexed HTS assays. Bioactivity of extracts from 38streams was evaluated and compared with concentrations of over 700 analytes to identify chemicals contributing to observed effects. Eleven primary biological endpoints were detected. Pregnane X receptor and AhR-mediated activities were the most commonly detected. Measured chemicals did not completely account for AhR and PXR responses. Surface waters with AhR and PXR effects were associated with low intensity, developed land-cover. Likewise, elevated bioactivities frequently associated with wastewater discharges included endocrine related endpoints— ER and glucocorticoid receptor (GR). These results underscore the value of bioassay-based monitoring of environmental mixtures for detecting biological effects that could not be ascertained solely through chemical analyses.

Environmental Science & Technology

Water-resources-related information for the Oneida Reservation and vicinity, Wisconsin

Water-resources information has been compiled from 82 studies in which data were collected from the Oneida Reservation and vicinity. Forty-seven studies addressed surface-water issues, 33 studies addressed ground-water issues, and 23 studies addressed aquatic-biology issues. Some multidisciplinary studies are included in more than one category. Most of the surface-water studies summarized in this report included both water-quality and flow information. Several surface-water studies provided detailed short-term descriptions of surface- water quality and flow for parts of the Reservation and vicinity. Surface-water and stream-sediment quality data from several data bases have been compiled for this report. Most of the compiled data come from two sites on Duck Creek. Data from Duck Creek were analyzed for trends in concentrations of suspended sediment, dissolved nitrite plus nitrate, and dissolved atrazine. No trends were detected for any of these constituents. Trends in concentration of most constituents in surface-water samples were not calculated because of the short period of data collection at nearly all of the sites. Most of the ground-water reports that were identified included both quality and quantity and flow information. None of the ground-water studies provided a detailed description of ground-water quality for the Reservation as a whole. Several reports provide varied and detailed information for ground-water models that are useful for understanding hydrogeology and ground-water flow for the Reservation and vicinity. Ground-water quality data from 180 wells, compiled from several data bases, provided an incomplete summary of the condition of the drinking- water resources of the Reservation. Only 12 constituents, from a small number of wells, exceeded a USEPA drinking-water limit. Most of the exceedences were for trace metals and organics. No exceedences for pesticides or nitrate were reported; however, pesticide data were collected from only a small number of wells. Most of the aquatic biology studies described in this report include fish data, habitat data, or calculations of biotic index values, most of which comes from Duck Creek. Historical aquatic biology data for the Reservation and vicinity are limited. Most of the 23 studies described here were done since 1992. Most of the biota-quality data compiled for this report come from several sites on Duck Creek and represent a small number of samples. Results of the community survey regarding the water resources of the Oneida Reservation indicate that water usage by Tribal members today has declined when compared to the past. The most common reason given for the decline in usage was pollution. Most of those surveyed perceived Duck Creek as being "polluted," but about 50 percent thought that water quality in the Reservation was improving.

Wisconsin

Water-quality assessment of the upper Snake River Basin, Idaho and western Wyoming — Summary of aquatic biological data for surface water through 1992

The 35,800-square-mile upper Snake River Basin in eastern Idaho and western Wyoming was one of 20 areas selected for water-quality study under the National Water-Quality Assessment Program. As part of the initial phase of the study, data were compiled to describe the current (1992) and historical aquatic biological conditions of surface water in the basin. This description of natural and human environmental factors that affect aquatic life provides the framework for evaluating the status and trends of aquatic biological conditions in streams of the basins. Water resource development and stream alterations, irrigated agriculture, grazing, aquaculture, and species introductions have affected stream biota in the upper Snake River Basin. Cumulative effects of these activities have greatly altered cold-water habitat and aquatic life in the middle Snake River reach (Milner Dam to King Hill). Most of the aquatic Species of Special Concern in the basin , consisting of eight native mollusks and three native fish species, are in this reach of the Snake River. Selected long-term studies, including comprehensive monitoring on Rock Creek, have shown reduced pollutant loadings as a result of implementing practice on cropland; however, aquatic life remains affected by agricultural land use. Community level biological data are lacking for most of the streams in the basin, especially for large river. Aquatic life used to assess water quality of the basin includes primarily macroinvertebrate and fish communities. At least 26 different macroinvertebrate and fish community metrics have been utilized to assess water quality of the basin. Eight species of macroinvertebrates and fish are recognized as Species of Special Concern. The native fish faunas of the basin are composed primarily of cold-water species representing 5 families and 26 species. An additional 13 fish species have been introduced to the basin. Concentrations of synthetic organic compounds and trace-element contaminants in whole fish collected in the basin during 1970-90 generally did not exceed National Academy of Sciences and National Academy of Engineering concentration guidelines or the 1980-81 geometric mean concentrations from samples collected as part of the U.S. Fish and Wildlife Service National Contaminant Biomonitoring Program. Currently, there are no State fish consumption advisories on any streams in the basin, The organochlorine compounds DDT and PCB's were the most frequently detected fish tissue contaminant. Selected long-term data on DDT, its metabolites, and PCB's indicate decreasing concentrations of these compounds. Arsenic, mercury, and selenium were slightly elevated compared with nationwide baseline concentrations and may indicate bioaccumularion in the food chain. Concentrations of most other trace elements in fish tissue were below levels of concerns for the protection of humans and wildlife.

Idaho, Wyoming

A census of marine life: Unknowable or just unknown?

As an introduction to the entire volume, this article outlines the relationships among the five elements of the Census of Marine Life (CoML) that create new knowledge: (1) The Ocean Biogeographic Information System (OBIS), a marine component of the Global Biodiversity Information Facility, links marine databases around the world to provide an Internet accessible, dynamic interface for comparing species-level, geo-referenced biodiversity data in relation to ocean habitats. The entire CoML field project data will be managed in and accessible through OBIS. (2) The History of Marine Animal Populations (HMAP) is a unique new synthesis of historical and biological research that will document marine biodiversity, globally, up to 500 years ago, before significant human impact, and store it in formats compatible with modern data in OBIS. (3) The Scientific Committee on Oceanic Research Working Group 118 monitors and recommends advanced marine technologies, ready to be routinely used in CoML field projects. (4) CoML Initial Field Projects develop and calibrate these technologies in selected regions to facilitate and accelerate global biodiversity research. As calibrated technologies and protocols are adopted in many regions, qualitative and quantitative biodiversity discoveries accumulate. (5) The Future of Marine Animal Populations (FMAP) program will insure that the data in OBIS are suitable for modeling and predicting changes in global biodiversity in response to fishing, pollution, and climate change challenges. It will make datasets available for hindcasting and forecasting analyses linked to physical ocean observations and assist in documenting the impacts of conservation efforts on sustainability.

Oceanologica Acta

Differing Eocene floral histories in southeastern North America and Western Europe: Influence of paleogeography

Pollen data show that in southeastern North America, the Eocene angiosperm flora attained its maximum relative diversity some 8 m.y. after the late early Eocene to earliest middle Eocene climatic maximum. Increasing diversity resulted in part from the flora's position on a large continent which allowed easy migration. In western Europe, the floral diversity began decreasing even before the climatic maximum. Paleogeography played large roles in this diversity decrease. In western Europe, terrestrial floras were on islands and peninsulas in the sea, so that the floras underwent increasing isolation and partial local extermination. Temperate plants generally did not migrate to western Europe, because of a lack of nearby uplands, lack of northern terrestrial source areas for these plants, and presence of the Turgai Straights barrier. The Eocene climate of western Europe cooled at least partly because of decreasing contact with the warm Tethys Seaway.

Historical Biology

Investigation of wind and water level for the Giacomini Wetland Restoration Project, Point Reyes National Seashore

Point Reyes National Seashore (PRNS), comprising unique elements of geological, biological, and historical interest, is located on the central California coast approximately 60 km northwest of San Francisco. The National Seashore contains nearly 130 km of exposed and protected shorelines, spectacular coastal cliffs and headlands, lagoons, open grasslands, bushy hillsides, and forested ridges. Approximately 30 km of the shoreline are coastal-dune habitat that supports 11 federally listed species, including the threatened western snowy plover and the endangered plants Tidestrom's lupine ( Lupinus tidestromii ) and beach layia ( Layia carnosa ). The San Andreas Fault, a right-lateral strike-slip fault, trends northwest along the northeastern side of the park. Tomales Bay, which is straight, long, narrow, and shallow, runs along the northeastern boundary of PRNS. The Bay, which fills the northwestern end of a rift valley at the intersection of the San Andreas Fault with the coastline, is approximately 20 km long, 2 km wide, and 6 m deep with mountainous terrain to the southwest and rolling hills to the northeast. Tomales Bay is one of the cleanest estuaries on the West Coast. In winter, approximately 17,000 to 20,000 shorebirds inhabit Tomales Bay and Bodega Bay, which lies directly to the north. At the head of Tomales Bay, the Giacomini Ranch comprises 563 acres of pastureland currently being used for grazing dairy cattle. After more than 50 years of operation as a dairy, the National Park Service acquired the Giacomini property with the intention to restore most of it and the nearby Olema Marsh to tidal wetland. Restoration will add approximately 4% to the existing coastal wetlands in California. The project will return the headwaters of Tomales Bay and two major stream intersections to an intertidal marsh environment, enhancing habitat for both wildlife and fish populations and contributing to the long-term health of Tomales Bay. Prior to the establishment of the ranch, the area was primarily salt marsh that formed as the delta of Lagunitas Creek expanded into Tomales Bay. In converting the salt marsh to dairy land, levees and tide gates were constructed to prevent tidal incursion and stream flooding. Those levees have significantly altered the patterns of estuarine circulation and sediment deposition. To restore natural hydrologic processes within the area and to promote the return of ecological functions and processes, the levees will have to be breached or removed. Developing a successful restoration strategy requires knowledge of elevations within the pastureland and the range of water depths that can be expected from tidal, river, and wind action. In support of the restoration program, the USGS provides technical assistance to PRNS in the form of a scientific study focusing on understanding the physical processes that could affect the Giacomini wetland restoration. The study will yield scientific products that NPS resource managers can use in designing and implementing the restoration project. Research elements include: - Develop a Geodetic Control Network (GCN) throughout PRNS that meets the standards specified National Geodetic Survey data base (the NGS "Bluebook"). The grid will allow this and future studies to be conducted to a precision commensurate with the expressed goals of PRNS. The survey will consist of three steps: (1) verify existing GPS control monuments in the area; (2) tie control monuments in the study areas to the GPS control monuments; and (3) establish NAVD88 elevations using a digital electronic level. - Conduct a detailed survey of the Giacomini site to produce an accurate topographic map of the property. The site survey can be coupled with on-site water-level measurements to produce an empirical flooding model. - Measure water level and wind regime at the Giacomini site. The water-level range is critical to determining the wetland types based on the elevation of the dairy land. Water level at Sacramento Landing, in central Tomales Bay, will also be measured for comparison. As of November 2005, we have created a GCN, produced a detailed topographic map of the Giacomini site, and collected approximately three years of water-level and wind data at the Giacomini site and over one year of usable water-level data at the Sacramento Landing pier.

California

Ecology and biology of paddlefish in North America: historical perspectives, management approaches, and research priorities

Paddlefish ( Polyodon spathula , Polyodontidae)are large, mostly-riverine fish that once were abundant in medium- to large-sized river systems throughout much of the central United States. Concern for paddlefish populations has grown from a regional fisheries issue to one of national importance for the United States. In 1989, the U.S. Fish and Wildlife Service (USFWS) was petitioned to list paddlefish as a federally threatened species under the Endangered Species Act. The petition was not granted, primarily because of a lack of empirical data on paddlefish population size, age structure, growth, or harvest rates across the present 22-state range. Nonetheless, concern for paddlefish populations prompted the USFWS to recommend that paddlefish be protected through the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). The addition of paddlefish to Appendix II of CITES, which was approved in March 1992, provides a mechanism to curtail illegal trade in paddlefish and their parts and supports a variety of conservation plans. Paddlefish populations have been negatively affected by overharvest, river modifications, and pollution, but the paddlefish still occupies much of its historic range and most extant populations seem to be stable. Although many facets of paddlefish biology and ecology are well understood, the lack of information on larval and juvenile ecology, mechanisms that determine recruitment, population size and vital rates, interjurisdictional movements, and the effects of anthropogenic activities present significant obstacles for managing paddlefish populations. Questions about the size and structure of local populations, and how such populations are affected by navigation traffic, dams, and pollution are regarded as medium priority areas for future research. The availability of suitable spawning habitat and overall reproductive success in impounded rivers are unknown and represent critical areas for future research. Research on reproductive and recruitment success in impounded rivers have significant implications for managing paddlefish, as rivers are modified further for human use.

Reviews in Fish Biology and Fisheries

Genetic signatures of historical dispersal of fish threatened by biological invasions: the case of galaxiids in South America

Aim The ecological effects of biological invasions are well documented, but little is known about the effects of invaders on the genetic structure of native species. We examined the phylogeography, genetic variation and population structuring of two galaxiid fishes, Aplochiton zebra and A. taeniatus , threatened by non-native salmonids, and whose conservation is complicated by misidentification and limited knowledge of their genetic diversity. Location Chile and the Falkland Islands. Methods We combined microsatellite and mitochondrial DNA (16S rDNA and COI) markers to compare genetic diversity, effective population size and gene flow of Aplochiton spp. populations differentially affected by salmonid presence. Results We identified two 16S rDNA haplotypes among A. zebra – one dominant in coastal populations and another dominant in inland populations. Populations living on the island of Chiloé displayed a mixture of coastal and inland haplotypes, as well as high microsatellite diversity, as one would expect if the island had been a refugium during the Last Glacial Maximum, or a contact zone among populations. Microsatellite data revealed strong population structuring, indicative of current isolation patterns, and a negative correlation between the genetic diversity of A. zebra and the relative abundance of invasive salmonids. Main conclusions Our study indicates that population structuring of A. zebra reflects the influence of historical patterns of migration, but also the current levels of reduced gene flow among watersheds. Invasive salmonids, known to compete with and prey on native galaxiids, may have had negative impacts on the genetic diversity of Aplochiton spp. The low genetic variation found in some populations, coupled with potential biases in abundance estimates due to species misidentification, highlight the urgent need for more research into the conservation status of the two species of Aplochiton .

Journal of Biogeography

Effects of postfire climate and seed availability on postfire conifer regeneration

Large, severe fires are becoming more frequent in many forest types across the western United States and have resulted in tree mortality across tens of thousands of hectares. Conifer regeneration in these areas is limited because seeds must travel long distances to reach the interior of large burned patches and establishment is jeopardized by increasingly hot and dry conditions. To better inform postfire management in low elevation forests of California, USA, we collected 5‐year postfire recovery data from 1,234 study plots in 19 wildfires that burned from 2004–2012 and 18 years of seed production data from 216 seed fall traps (1999–2017). We used this data in conjunction with spatially extensive estimates of climate, topography, forest composition, and burn severity to construct taxon‐specific, spatially explicit models of conifer regeneration that incorporate estimated climate conditions and seed availability during postfire recovery windows. We found that after accounting for other predictors both postfire and historical precipitation were strong predictors of regeneration, suggesting that both direct effects of postfire moisture conditions and biological inertia from historical climate may play a role in regeneration. Alternatively, postfire regeneration may simply be driven by postfire climate and apparent relationships with historical climate could be spurious. The estimated sensitivity of regeneration to postfire seed availability was strongest in firs and all conifers combined and weaker in pines. Seed production exhibited high temporal variability with seed production varying by over two orders of magnitude among years. Our models indicate that during droughts postfire conifer regeneration declines most substantially in low‐to‐moderate elevation forests. These findings enhance our mechanistic understanding of forecasted and historically documented shifts in the distribution of trees.

California

Galliform exclusion from the Migratory Bird Treaty Act has produced an alternate conservation path, but no evidence for differences in population status

The Migratory Bird Treaty Act (MBTA) is critical to avian conservation in the United States, both through its protection of migratory birds and as a catalyst for a century of coordinated avian conservation. While more than 1,000 species are protected by MBTA, of extant bird species native to the continental U.S., only 20 species belonging to the order Galliformes are explicitly excluded. Management of galliforms has occurred largely without direct federal oversight, placing this group on a fundamentally different conservation path during the century following MBTA passage. In this paper, we review the historical context and biological justification for exclusion of galliforms from MBTA and synthesize how their present-day conservation differs from that of migratory birds. We find the most prominent difference between the two groups involves the scope of coordination among stakeholders. The U.S. government, primarily via the Department of Interior, acts as de facto coordinating body for migratory bird conservation and plays the central role in oversight, funding, and administration of management in the United States. In contrast, galliform management falls primarily to individual state wildlife agencies, and coordinated conservation efforts have been more ad hoc and unevenly spread across species. Migratory birds benefit from an almost universally greater scope of research and monitoring, scale of habitat conservation, and sophistication of harvest management compared with galliforms. Galliform harvest management plans, in particular, are less likely to use measurable objectives, reporting of uncertainty in population parameters, and explanation of harvest management techniques. Based on a review of species status lists (e.g., the U.S. Endangered Species Act), we found no evidence that galliforms were more frequently listed than migratory species. Regional trend estimates from the North American Breeding Bird Survey (BBS) were more likely to be negative for galliforms over the period 1966–2015, but this was primarily driven by Northern Bobwhite ( Colinus virginianus ). Data to assess galliform population status are generally poor, which complicates assessment for roughly half of galliform species. Increased support for coordination among state agencies and other stakeholders, similar to that applied to migratory birds, could help to ensure that galliform conservation is poised to tackle forthcoming challenges associated with global change.

North America

Historical changes in the Columbia River estuary based on sediment cores: feasibility studies

The importance of the Columbia River estuary to salmon, other fishes, migratory birds, and other species is fairly well established. Relatively little is known, however, about long-term, historic variations in biological processes and conditions within the estuary. For example, have conditions varied greatly with climatic regime shifts and how has dam construction on the Columbia River influenced biological communities over time? We conducted a feasibility study to see if sediment cores from the estuary could be aged and whether biological or contaminant indicators could be identified. Such information could be useful in understanding long-term environmental variation and in restoration studies.

Oregon, Washington

Trends in nonindigenous aquatic species richness in the United States reveal shifting spatial and temporal patterns of species introductions

Understanding the spatial and temporal dynamics underlying the introduction and spread of nonindigenous aquatic species (NAS) can provide important insights into the historical drivers of biological invasions and aid in forecasting future patterns of nonindigenous species arrival and spread. Increasingly, public databases of species observation records are being used to quantify changes in NAS distributions across space and time, and are becoming an important resource for researchers, managers, and policy-makers. Here we use publicly available data to describe trends in NAS introduction and spread across the conterminous United States over more than two centuries of observation records. Available data on first records of NAS reveal significant shifts in dominance of particular introduction patterns over time, both in terms of recipient regions and likely sources. These spatiotemporal trends at the continental scale may be subject to biases associated with regional variation in sampling effort, reporting, and data curation. We therefore also examined two additional metrics, the number of individual records and the spatial coverage of those records, which are likely to be more closely associated with sampling effort. Our results suggest that broad-scale patterns may mask considerable variation across regions, time periods, and even entities contributing to NAS sampling. In some cases, observed temporal shifts in species discovery may be influenced by dramatic fluctuations in the number and spatial extent of individual observations, reflecting the possibility that shifts in sampling effort may obscure underlying rates of NAS introduction.

Aquatic Invasions

Vascular Plant and Vertebrate Inventory of Tumacacori National Historical Park

Executive Summary This report summarizes the results of the first comprehensive biological inventory of Tumacacori National Historical Park (NHP) in southern Arizona. These surveys were part of a larger effort to inventory vascular plants and vertebrates in eight National Park Service units in Arizona and New Mexico. From 2000 to 2003 we surveyed for vascular plants and vertebrates (fish, amphibians, reptiles, birds, and mammals) at Tumacacori NHP to document presence of species within the administrative boundaries of the park's three units. Because we used repeatable study designs and standardized field techniques, these inventories can serve as the first step in a long-term monitoring program. We recorded 591 species at Tumacacori NHP, significantly increasing the number of known species for the park (Table 1). Species of note in each taxonomic group include: * Plants: second record in Arizona of muster John Henry, a non-native species that is ranked a 'Class A noxious weed' in California; * Amphibian: Great Plains narrow-mouthed toad; * Reptiles: eastern fence lizard and Sonoran mud turtle; * Birds: yellow-billed cuckoo, green kingfisher, and one observation of the endangered southwestern willow flycatcher; * Fishes: four native species including an important population of the endangered Gila topminnow in the Tumacacori Channel; * Mammals: black bear and all four species of skunk known to occur in Arizona. We recorded 79 non-native species (Table E.S.1), many of which are of management concern, including: Bermudagrass, tamarisk, western mosquitofish, largemouth bass, bluegill, sunfish, American bullfrog, feral cats and dogs, and cattle. We also noted an abundance of crayfish (a non-native invertebrate). We review some of the important non-native species and make recommendations to remove them or to minimize their impacts on the native biota of the park. Based on the observed species richness, Tumacacori NHP possesses high biological diversity of plants, fish, and birds for a park of its size. This richness is due in part to the ecotone between ecological provinces (Madrean and Sonoran), the geographic distribution of the three units (23 km separates the most distant units), and their close proximity to the Santa Cruz River. The mesic life zone along the river, including rare cottonwood/willow forests and adjacent mesquite bosque at the Tumacacori unit, is representative of areas that have been destroyed or degraded in many other locations in the region. Additional elements such as the semi-desert grassland vegetation community are also related to high species richness for some taxonomic groups. This report includes lists of species recorded by us (or likely to be recorded with additional effort) and maps of study sites. We also suggest management implications and ways to maintain or enhance the unique biological resources of Tumacacori NHP: limit development adjacent to the park, exclude cattle and off-road vehicles, develop an eradication plan for non-native species, and hire a natural resource specialist. These recommendations are intended to assist park staff with addressing many of the goals set out in their most recent natural resources management plan. This study is the first step in a long-term process of compiling information on the biological resources of Tumacacori NHP and its surrounding areas, and our findings should not be viewed as the final authority on the plants and animals of the park. Therefore, we also recommend additional inventory and monitoring studies and identify components of our effort that could be improved upon, either through the application of new techniques (e.g., use of genetic markers) or by extending the temporal and/or spatial scope of our research.

Open-File Report

Stories in stone: The geoheritage significance of U.S. National Park Service stratotypes

The U.S. National Park Service stratotype inventory has systematically documented hundreds of published stratotypes across the country that represent a quintessential component of America’s geoheritage and possess significant scientific, educational, cultural, historic, and aesthetic values. As valuable geologic reference standards, stratotypes record intervals of Earth history relating to our nation’s unique geologic evolution, biological progression, cultural traditions, historical narratives, and stunning landforms. However, the general lack of awareness and knowledge regarding the scope, significance, distribution, and scale of stratotypes can result in these resources being overlooked. Consequently, stratotypes may inadvertently experience accidental alteration, damage, or destruction through both natural and anthropogenic processes. As with many American geoheritage sites, stratotypes lack specific recognition through legislation, policies, or other management strategies to ensure their preservation and protection. Through education and outreach, we hope to inform, increase awareness, and engage the public about these internationally and nationally significant geologic reference sites, unite various geoheritage communities, and promote their preservation for future generations.

Geoheritage

Predicting sea-level rise vulnerability of terrestrial habitat and wildlife of the Northwestern Hawaiian Islands

If current climate change trends continue, rising sea levels may inundate low-lying islands across the globe, placing island biodiversity at risk. Recent models predict a rise of approximately one meter (1 m) in global sea level by 2100, with larger increases possible in areas of the Pacific Ocean. Pacific Islands are unique ecosystems home to many endangered endemic plant and animal species. The Northwestern Hawaiian Islands (NWHI), which extend 1,930 kilometers (km) beyond the main Hawaiian Islands, are a World Heritage Site and part of the Papahanaumokuakea Marine National Monument. These NWHI support the largest tropical seabird rookery in the world, providing breeding habitat for 21 species of seabirds, 4 endemic land bird species and essential foraging, breeding, or haul-out habitat for other resident and migratory wildlife. In recent years, concern has grown about the increasing vulnerability of the NWHI and their wildlife populations to changing climatic patterns, particularly the uncertainty associated with potential impacts from global sea-level rise (SLR) and storms. In response to the need by managers to adapt future resource protection strategies to climate change variability and dynamic island ecosystems, we have synthesized and down scaled analyses for this important region. This report describes a 2-year study of a remote northwestern Pacific atoll ecosystem and identifies wildlife and habitat vulnerable to rising sea levels and changing climate conditions. A lack of high-resolution topographic data for low-lying islands of the NWHI had previously precluded an extensive quantitative model of the potential impacts of SLR on wildlife habitat. The first chapter (chapter 1) describes the vegetation and topography of 20 islands of Papahanaumokuakea Marine National Monument, the distribution and status of wildlife populations, and the predicted impacts for a range of SLR scenarios. Furthermore, this chapter explores the potential effects of SLR on wildlife breeding habitats for each island. The subsequent chapter (chapter 2) details a study of the Laysan Island ecosystem, describing a quantitative model that incorporates SLR, storm wave, and rising groundwater inundation. Wildlife, storm, and oceanographic data allowed for an assessment of the phenological and spatial vulnerability of Laysan Island's breeding bird species to SLR and storms. Using remote sensing and geospatial techniques, we estimated topography, classified vegetation, modeled SLR, and evaluated a range of climate change scenarios. On the basis of high-resolution airborne data collected during 2010-11 (root-mean-squared error = 0.05-0.18 m), we estimated the maximum elevation of 20 individual islands extending from Kure Atoll to French Frigate Shoals (range: 1.8-39.7 m) and computed the mean elevation (1.7 m, standard deviation 1.1 m) across all low-lying islands. We also analyzed general climate models to describe rainfall and temperature scenarios expected to influence adaptation of some plants and animals for this region. Outcomes for the NWHI predicted an increase in temperature of 1.8-2.6 degrees Celsius (°C) and an annual decrease in precipitation of 24.7-76.3 millimeters (mm) across the NWHI by 2100. Our models of passive SLR (excluding wave-driven effects, erosion, and accretion) showed that approximately 4 percent of the total land area in the NWHI will be lost with scenarios of +1.0 m of SLR and 26 percent will be lost with +2.0 m of SLR. Some atolls are especially vulnerable to SLR. For example, at Pearl and Hermes Atoll our analysis indicated substantial habitat losses with 43 percent of the land area inundated at +1.0 m SLR and 92 percent inundated at +2.0 m SLR. Across the NWHI, seven islands will be completely submerged with +2.0 m SLR. The limited global ranges of some tropical nesting birds make them particularly vulnerable to climate change impacts in the NWHI. Climate change scenarios and potential SLR impacts presented here emphasize the need for early climate change adaptation and mitigation planning, especially for species with limited breeding distributions and/or ranges restricted primarily to the low-lying NWHI: Cyperus pennatiformis var. bryanii , Black-footed Albatross ( Phoebastria nigripes ), Laysan Albatross ( P. immutabilis ), Bonin Petrel ( Pterodroma hypoleuca ), Gray-backed Tern ( Onychoprion lunatus ), Laysan Teal ( Anas laysanensis ), Laysan Finch ( Telespiza cantans ), and Hawaiian monk seal ( Monachus schauinslandi ). Furthermore, SLR scenarios that include the effects of wave dynamics and groundwater rise may indicate amplified vulnerability to climate change driven habitat loss on low-lying islands. In chapter 2, we incorporated the combined effects of SLR, dynamic wave-driven inundation, and rising groundwater in a quantitative study specifically for the Laysan Island ecosystem. This is the first hydrodynamic model to simulate the combined impacts of SLR and wave-driven inundation in the NWHI. We developed a high-resolution digital elevation model (mean vertical accuracy of 0.32 m) for the island. Then using recent satellite imagery, geospatial models, and historical oceanographic, storm, and biological data we estimated potential inundation extent, habitat loss, and wildlife population impacts for a range of potential SLR scenarios (0.00, +0.50, +1.00, +1.50, and +2.00 m) that may occur over the next century. Additionally, we estimated the carrying capacity of Laysan Island for five species based on the available population monitoring data and described how potential losses in nesting habitat could influence population dynamics for Black-footed Albatross, Laysan Albatross, Red-footed Booby (Sula sula), Laysan Teal, and Laysan Finch. For some other seabird populations (Masked Booby, S. dactylatra ; Brown Booby, S. leucogaster ; Great Frigatebird, Fregata minor ; and Sooty Tern, Onychoprion fuscata ), we used recent colony distribution data, land cover maps, and nesting behavior to estimate potential losses of nesting habitat from SLR and wave-driven inundation. We observed far greater potential impacts of SLR to wildlife with the dynamic wave-driven modeling approach than with the passive modeling approach. Depending on SLR scenario and coastal orientation, during storms under a +2.00 m SLR scenario, the wave-driven inundation model predicted three times more inundation than the passive model (17.2 percent of total terrestrial area versus 4.6 percent, respectively). Large-wave events generally added 1 m of water height to passive inundation surfaces, therefore our dynamic models (during storm events) forecasted comparable inundation extents earlier than passive models. Although wave-driven water levels were highest in the northwest quadrant of Laysan Island, the greatest extent of inundation occurred in the southeast where coastal dunes less than 3 m above mean sea level provide little protection from wave-driven inundation. When wave-driven inundation was included in the SLR model for Laysan Island greater nesting habitat loss and potential impacts on wildlife population dynamics were predicted. The consequences of habitat loss due to SLR may be worse for species with colonies in the wave-exposed coastal zones (for example, Black-footed Albatross) and for populations already near the island's carrying capacity (for example, Laysan Teal). Species whose peak incubation and chick-rearing periods coincide with seasonally high wave heights also will be increasingly vulnerable, especially those species nesting on the ground in areas vulnerable to inundation, such as Gray-backed Tern and Black-footed Albatross. Other species that have space for population growth, or are not restricted to a narrow range of habitat types on Laysan (for instance, Sooty Terns), may be less sensitive to habitat loss from SLR over the next century. Our assessments of inundation risk, habitat loss, and wildlife species vulnerability synthesize current knowledge about individual islands and contribute to a broader understanding of the impacts of inundation from SLR and storm-induced waves. Yet, most NWHI and their bird populations lack monitoring data to evaluate adaptations to and impacts of climate change. Exceptions include some data sets from long-term monitoring of wildlife populations, tides, or weather at French Frigate Shoals, Laysan Island, and Midway Atoll. These data sets are potentially valuable baselines, which could be informative for adaptive learning (integrating management and science) to predict, adapt, and mitigate the effects of climate change on NWHI wildlife in the future. This study provides the first quantitative vulnerability assessment for all of the low-lying NWHI, and results identify biological communities, locales, and resident endangered species of Papahanaumokuakea Marine National Monument expected to be at risk from SLR. This report is also intended as a reference for managers and conservation planners, a tool to identify and potentially reduce uncertainty, and a starting place for developing climate change monitoring priorities and future scientific studies.

Hawai'i

Sediment budgets, transport, and depositional trends in a large tidal delta

The Sacramento-San Joaquin Delta is the largest delta on the west coast of the United States. It is formed where the confluence of California’s two largest rivers (the Sacramento and San Joaquin) meet the ocean tides and has a significant physical gradient from fluvial to tidal. It is a semidiurnal system (two high and two low tides per day). Today, the Delta is one of the most manipulated in the United States. Once composed of many shallow, meandering and braided dendritic channels and dead-end sloughs and wetlands, it is now a network of leveed canals moving clear water around subsided islands. It historically has supported a biologically diverse tidal wetland complex, of which only 3% remains today (Whipple et al., 2012). It has also witnessed a collapse in the native fish populations. The Delta provides critical habitat for native species, however the hydrology and water quality are complicated by manipulations and diversions to satisfy multiple statewide objectives. Today water managers face co-equal goals of water supply to Californians and maintenance of ecosystem health and function. The Delta is a hub for both a multi-hundred-million dollar agricultural industry and a massive north-to-south water delivery system, supplying the primary source of freshwater to Central Valley farmers and drinking water for two-thirds of California’s population. Large pump facilities support the water demand and draw water from the Delta, further altering circulation patterns and redirecting the net flow toward the export facilities (Monsen et al., 2007). Fluvial sedimentation, along with organic accumulation, creates and sustains the Delta landscape. Hydraulic mining for gold in the watershed during the late 1800s delivered an especially large sediment pulse to the Delta. More recently, from 1955 to the present, a significant sediment decline has been observed that is thought to have been caused mostly by the construction of water storage reservoirs that trap the upstream sediment supply (Wright and Schoellhamer, 2004). Today, one concern is whether the volume of sediment supplied from the upper watershed is sufficient to support ecological function and sustain the Delta landscape and ecosystem in the face of climate change, sea level rise, and proposed restoration associated with the Bay Delta Conservation Plan (http://baydeltaconservationplan.com). Ecosystem health is a management focus and 150,000 acres of restoration is currently proposed, therefore it is of increasingly important to understand the quantity of sediment available for marsh and wetland restoration throughout the Bay Delta Estuary. It is also important to understand the pathways for sediment transport and the sediment budget into each of three Delta regions (figure 1) to guide restoration planning, modeling, and management.

California

Mapping biological soil crusts in a Hawaiian dryland

Historical and ongoing land use patterns in the Hawaiian Islands have degraded the Islands’ drylands, causing erosion and detrimentally affecting adjacent coastal marine ecosystems. Biological soil crust (biocrust) communities have been shown to increase soil stability in drylands worldwide, but their efficacy in mitigating soil erosion in Hawaiian drylands is largely unknown. Using a combination of field data and imagery collected by small unmanned aerial systems (sUAS), we mapped biocrusts and examined their influence on soil stability in the Kawaihae watershed, an erosion-prone dryland on leeward Hawai`i Island. We created classified maps of biocrust cover from imagery collected at three spatial resolutions (1.2, 2.1 and 2.8 cm/pixel) using the pixel-based Support Vector Machine (SVM) classifier and investigated the impacts of spatial resolution and biocrust level of development on classification accuracy. Our medium (2.1 cm) resolution image produced the highest overall classification accuracy when biocrust was treated as a single class (82.1%). We explored the spatial impacts of biocrusts on soil loss via sUAS-derived measurements of elevation change over a four-year time span. We found differences in soil loss among land cover types, but robustly quantifying these was a challenge, as much of the change fell below statistically significant limits of detection. We investigated the relationship between biocrust development and soil stability by conducting soil aggregate stability testing at the three biocrust levels of development (LODs) present at the study site. We found a significant increase in soil stability from soils without surface biocrusts (LOD score of 0) to those with biocrusts at any development level (LOD 1–3). Our research adds to the body of biocrust knowledge by presenting new information about biocrust distribution and soil stabilization capabilities in Hawaiian drylands. We also provide insights into the trade-offs between spatial resolution and classification accuracy for biocrust classification and land cover analysis.

Hawaii