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At least 19 recordsLinked to original sources
USGS2025

Monitoring cyanobacteria temporal trends in a hypereutrophic lake using remote sensing: From multispectral to hyperspectral

Cyanobacterial harmful algal blooms (cyanoHABs) and associated cyanotoxins are a concern for inland waters. Due to the extensive spatial coverage and frequent availability of satellite images, multispectral remote sensing tools demonstrate utility for monitoring these blooms. The next frontier for remote sensing of cyanoHABs in inland waters is hyperspectral data. Recent and upcoming hyperspectral satellite missions using narrow wavelength imaging spectrometers could have a major impact on advancing our ability to detect, quantify, and characterize cyanobacterial blooms. This study compares multispectral and hyperspectral remote sensing capabilities and processing tools for monitoring cyanoHAB dynamics. We evaluated the temporal trends of cyanoHABs in Clear Lake, California, a hypereutrophic lake with diverse cyanobacteria genera based on 38 sampling events over a five-year monitoring period (2019–2023). We validated the Sentinel-3 Ocean and Land Color Instrument (multispectral) Cyanobacteria Index algorithm for Clear Lake using in situ cyanobacteria measurements, which complemented our field-based evaluation of cyanobacteria trends in Clear Lake. We then demonstrate the advantages of hyperspectral data from both in situ spectroradiometer measurements and full-lake hyperspectral satellite images. We apply the Spectral Mixture Analysis for Surveillance of HABs (SMASH) workflow, a Multiple Endmember Spectral Mixture Analysis (MESMA) algorithm, to the hyperspectral images to assess the potential of satellite imaging spectrometer data to identify cyanobacteria genera – the first study to test this tool outside its original study sites. We developed a Clear Lake-specific cyanobacteria spectral library using our field spectroradiometer measurements to improve SMASH performance in Clear Lake, which supports the continued development of this tool.

California↗
USGS2024

Evaluating the potential for efficient, UAS-based reach-scale mapping of river channel bathymetry from multispectral images

Introduction: Information on spatial patterns of water depth in river channels is valuable for numerous applications, but such data can be difficult to obtain via traditional field methods. Ongoing developments in remote sensing technology have enabled various image-based approaches for mapping river bathymetry; this study evaluated the potential to retrieve depth from multispectral images acquired by an uncrewed aircraft system (UAS). Methods: More specifically, we produced depth maps for a 4 km reach of a clear-flowing, relatively shallow river using an established spectrally based algorithm, Optimal Band Ratio Analysis. To assess accuracy, we compared image-derived estimates to direct measurements of water depth. The field data were collected by wading and from a boat equipped with an echo sounder and used to survey cross sections and a longitudinal profile. We partitioned our study area along the Sacramento River, California, USA, into three distinct sub-reaches and acquired a separate image for each one. In addition to the typical, self-contained, per-image depth retrieval workflow, we also explored the possibility of exporting a relationship between depth and reflectance calibrated using data from one site to the other two sub-reaches. Moreover, we evaluated whether sampling configurations progressively more sparse than our full field survey could still provide sufficient calibration data for developing robust depth retrieval models. Results: Our results indicate that under favorable environmental conditions like those observed on the Sacramento River during low flow, accurate, precise depth maps can be derived from images acquired by UAS, not only within a sub-reach but also across multiple, adjacent sub-reaches of the same river. Discussion: Moreover, our findings imply that the level of effort invested in obtaining field data for calibration could be significantly reduced. In aggregate, this investigation suggests that UAS-based remote sensing could facilitate highly efficient, cost-effective, operational mapping of river bathymetry at the reach scale in clear-flowing streams.

California↗
USGS2025

Resiliency of land change monitoring efforts to input data resampling

The geometric transformation of remotely sensed imagery from one map projection to another necessitates a data resampling operation which alters the recorded values. The global Landsat archive is made available in the Universal Transverse Mercator (UTM) projection system which preserves geographic shape across small area but introduces small errors in distance and area. As remote sensing-based studies develop from local scales to regional and global, they need to adopt more appropriate map projections from which accurate area measurements can be made. While effects of resampling on recorded values have been studied in the past, the impacts on higher-level results such as land cover have not been widely reported. This study investigates an approach for monitoring land cover and land change using two input datasets derived from identical source Landsat data, where one input dataset is transformed to an equal-area map projection and thereby resampled. Recorded surface reflectance values are changed through the reprojection/resampling process, and our study highlights observed differences in derived land cover from these two different input datasets throughout the various stages of deriving land cover and related characteristics. Our findings suggest that large-scale analyses of land cover will not be substantially impacted by reprojection of input data, but small-scale analyses should exercise caution when interpreting timing and magnitude of pixel-level change and classification dynamics.

Georgia↗
USGS2023

Leveraging multimission satellite data for spatiotemporally coherent cyanoHAB monitoring

Cyanobacteria harmful algal blooms (cyanoHABs) present a critical public health challenge for aquatic resource and public health managers. Satellite remote sensing is well-positioned to aid in the identification and mapping of cyanoHABs and their dynamics, giving freshwater resource managers a tool for both rapid and long-term protection of public health. Monitoring cyanoHABs in lakes and reservoirs with remote sensing requires robust processing techniques for generating accurate and consistent products across local and global scales at high revisit rates. We leveraged the high spatial and temporal resolution chlorophyll-a (Chl a ) and phycocyanin (PC) maps from two multispectral satellite sensors, the Sentinel-2 (S2) MultiSpectral Instrument (MSI) and the Sentinel-3 (S3) Ocean Land Colour Instrument (OLCI) respectively, to study bloom dynamics in Utah Lake, United States, for 2018. We used established Mixture Density Networks (MDNs) to map Chl a from MSI and train new MDNs for PC retrieval from OLCI, using the same architecture and training dataset previously proven for PC retrieval from hyperspectral imagery. Our assessment suggests lower median uncertainties and biases (i.e., 42% and -4%, respectively) than that of existing top-performing PC algorithms. Additionally, we compared bloom trends in MDN-based PC and Chl a products to those from a satellite-derived cyanobacteria cell density estimator, the cyanobacteria index (CI-cyano), to evaluate their utility in the context of public health risk management. Our comprehensive analyses indicate increased spatiotemporal coherence of bloom magnitude, frequency, occurrence, and extent of MDN-based maps compared to CI-cyano and potential for use in cyanoHAB monitoring for public health and aquatic resource managers.

Utah↗
USGS2024

Fine-scale surficial soil moisture mapping using UAS-based L-band remote sensing in a mixed oak-grassland landscape

Soil moisture maps provide quantitative information that, along with climate and energy balance, is critical to integrate with hydrologic processes for characterizing landscape conditions. However, soil moisture maps are difficult to produce for natural landscapes because of vegetation cover and complex topography. Satellite-based L-band microwave sensors are commonly used to develop spatial soil moisture data products, but most existing L-band satellites provide only coarse scale (one to tens of kilometers grid size), information that is unsuitable for measuring soil moisture variation at hillslope or watershed-scales. L-band sensors are typically deployed on satellite platforms and aircraft but have been too large to deploy on small uncrewed aircraft systems (UAS). There is a need for greater spatial resolution and development of effective measures of soil moisture across a variety of natural vegetation types. To address these challenges, a novel UAS-based L-band radiometer system was evaluated that has recently been tested in agricultural settings. In this study, L-band UAS was used to map soil moisture at 3–50-m (m) resolution in a 13 square kilometer (km 2 ) mixed grassland-forested landscape in Sonoma County, California. The results represent the first application of this technology in a natural landscape with complex topography and vegetation. The L-band inversion of the radiative transfer model produced soil moisture maps with an average unbiased root mean squared error (ubRMSE) of 0.07 m 3 /m 3 and a bias of 0.02 m 3 /m 3 . Improved fine-scale soil moisture maps developed using UAS-based systems may be used to help inform wildfire risk, improve hydrologic models, streamflow forecasting, and early detection of landslides.

California↗
USGS2022

Medium spatial resolution mapping of global land cover and land cover change across multiple decades from Landsat

Land cover maps are essential for characterizing the biophysical properties of the Earth’s land areas. Because land cover information synthesizes a rich array of information related to both the ecological condition of land areas and their exploitation by humans, they are widely used for basic and applied research that requires information related to land surface properties (e.g., terrestrial carbon models, water balance models, weather, and climate models) and are core inputs to models and analyses used by natural resource scientists and land managers. As the Earth’s global population has grown over the last several decades rates of land cover change have increased dramatically, with enormous impacts on ecosystem services (e.g., biodiversity, water supply, carbon sequestration, etc.). Hence, accurate information related to land cover is essential for both managing natural resources and for understanding society’s ecological, biophysical, and resource management footprint. To address the need for high-quality land cover information we are using the global record of Landsat observations to compile annual maps of global land cover from 2001 to 2020 at 30 m spatial resolution. To create these maps we use features derived from time series of Landsat imagery in combination with ancillary geospatial data and a large database of training sites to classify land cover at annual time step. The algorithm that we apply uses temporal segmentation to identify periods with stable land cover that are separated by breakpoints in the time series. Here we provide an overview of the methods and data sets we are using to create global maps of land cover. We describe the algorithms used to create these maps and the core land cover data sets that we are creating through this effort, and we summarize our approach to accuracy assessment. We also present a synthesis of early results and discuss the strengths and weaknesses of our early map products and the challenges that we have encountered in creating global land cover data sets from Landsat. Initial accuracy assessment for North America shows good overall accuracy (77.0 ± 2.0% correctly classified) and 79.8% agreement with the European Space Agency (ESA) WorldCover product. The land cover mapping results we report provide the foundation for robust, repeatable, and accurate mapping of global land cover and land cover change across multiple decades at 30 m spatial resolution from Landsat.

Frontiers in Remote Sensing↗
USGS2022

GSPy: A new toolbox and data standard for Geophysical Datasets

The diversity of geophysical methods and datatypes, as well as the isolated nature of various specialties (e.g., electromagnetic, seismic, potential fields) leads to a profusion of separate data file formats and documentation conventions. This can hinder cooperation and reduce the impact of datasets researchers have invested in heavily to collect and prepare. An open, portable, and well-supported community data standard could greatly improve the interoperability, transferability, and long-term archival of geophysical data. Airborne geophysical methods particularly need an open and accessible data standard, and they exemplify the complexity that is common in geophysical datasets where critical auxiliary information on the survey and system parameters are required to fully utilize and understand the data. Here, we propose a new Geophysical Standard, termed the GS convention, that leverages the well-established and widely used NetCDF file format and builds on the Climate and Forecasts (CF) metadata convention. We also present an accompanying open-source Python package, GSPy, to provide methods and workflows for building the GS-standardized NetCDF files, importing and exporting between common data formats, preparing input files for geophysical inversion software, and visualizing data and inverted models. By using the NetCDF format, handled through the Xarray Python package, and following the CF conventions, we standardize how metadata is recorded and directly stored with the data, from general survey and system information down to specific variable attributes. Utilizing the hierarchical nature of NetCDF, GS-formatted files are organized with a root Survey group that contains global metadata about the geophysical survey. Data are then organized into subgroups beneath Survey and are categorized as Tabular or Raster depending on the geometry and point of origin for the data. Lastly, the standard ensures consistency in constructing and tracking coordinate reference systems, which is vital for accurate portability and analysis. Development and adoption of a NetCDF-based data standard for geophysical surveys can greatly improve how these complex datasets are shared and utilized, making the data more accessible to a broader science community. The architecture of GSPy can be easily transferred to additional geophysical datatypes and methods in future releases.

Frontiers in Earth Science - Environmental Informa↗
USGS2011

LiDAR: Providing structure

Since the days of MacArthur, three-dimensional (3-D) structural information on the environment has fundamentally transformed scientific understanding of ecological phenomena (MacArthur and MacArthur 1961). Early data on ecosystem structure were painstakingly laborious to collect. However, as reviewed and reported in recent volumes of Frontiers(eg Vierling et al. 2008; Asner et al.2011), advances in light detection and ranging (LiDAR) remote-sensing technology provide quantitative and repeatable measurements of 3-D ecosystem structure that enable novel ecological insights at scales ranging from the plot, to the landscape, to the globe. Indeed, annual publication of studies using LiDAR to interpret ecological phenomena increased 17-fold during the past decade, with over 180 new studies appearing in 2010 (ISI Web of Science search conducted on 23 Mar 2011: [{lidar AND ecol*} OR {lidar AND fores*} OR {lidar AND plant*}]).

Frontiers in Ecology and the Environment↗
USGS2021

Detecting resource limitation in a large herbivore population is enhanced with measures of nutritional condition

Resource limitation at the population level is a function of forage quality and its abundance relative to its per capita availability, which in turn, determines nutritional condition of individuals. Effects of resource limitation on population dynamics in ungulates often occur through predictable and sequential changes in vital rates, which can enable assessments of how resource limitation influences population growth. We tested theoretical predictions of bottom-up (i.e., resource limitation) forcing on moose ( Alces alces ) through the lens of vital rates by quantifying the relative influence of intrinsic measures of nutritional condition and extrinsic measures of remotely sensed environmental data on demographic rates. We measured rates of pregnancy, parturition, juvenile, and adult survival for 82 adult females in a population where predators largely were absent. Life stage simulation analyses (LSAs) indicated that interannual fluctuations in adult survival contributed to most of the variability in λ. We then extended the LSA to estimate vital rates as a function of bottom-up covariates to evaluate their influence on λ. We detected weak signatures of effects from environmental covariates that were remotely sensed and spatially explicit to each seasonal range. Instead, nutritional condition strongly influenced rates of pregnancy, parturition, and overwinter survival of adults, clearly implicating resource limitation on λ. Our findings depart from the classic life-history paradigm of population dynamics in ungulates in that adult survival was highly variable and generated most of the variability in population growth rates. At the surface, lack of variation explained by environmental covariates may suggest weak evidence of resource limitation in the population, when nutritional condition actually underpinned most demographics. We suggest that variability in vital rates and effects of resource limitation may depend on context more than previously appreciated, and density dependence can obfuscate the relationships between remotely sensed data and demographic rates.

Wyoming↗
USGS2018

Science at the frontier: Multimethod research to evaluate ecosystem change across multiple scales

Changes in the Earth system occur across the full spectrum of spatial and temporal scales, yet our research approaches to understanding and predicting those changes are typically restricted to a pre-defined window of space and time. For this reason, there is substantial power in integrating different approaches, particularly for research associated with the multifaceted nature of ecosystem responses to global change. Within a given research approach – for example, remote sensing, field experimentation, modeling – science promotes the continued advancement of tools and techniques. As technical advancements continue at an unprecedented rate, new opportunities for integrated, multi-approach research emerge, which could more effectively capture the mechanisms and patterns that drive ecosystem structure and function. A capacity to move beyond comparison and into the realm of integration shows promise for promoting significant advances in Earth system science, as evidenced by the Organized Session Science at the Frontier: Using Multimethod Research to Create New Knowledge and Assess Tools Across Spatial and Temporal Scales on December 12, 2017 at the Fall meeting of the American Geophysical Union in New Orleans, Louisiana.

New Phytologist↗
USGS2025

Predicting aquatic habitat connectivity across watershed boundaries: Implications for interbasin spread of nonindigenous aquatic species.

Understanding habitat connectivity is critical for managing nonindigenous aquatic species (NAS) spread. Dams and watershed boundaries can be impassable to NAS during typical conditions but may become temporarily passable during flooding. The goal of our project was to develop an approach for identifying locations of aquatic connectivity at a fine spatial scale along watershed boundaries using readily available data. To develop this approach, we focused on the potential for range expansion of invasive fish in the United States via possible cross-boundary habitat connections. First, we developed an index using metrics of elevation, watershed size, and geology at regular points along a watershed boundary to stratify points by likelihood of connectivity during high precipitation (>20 mm of precipitation in a 3-day period). We then used a subset of points across a gradient of connectivity likelihoods to gather Landsat-derived observed surface water data and developed a statistical model to predict surface water presence from landscape characteristics. We applied the model throughout the entire watershed boundary to identify locations of hydrologic connectivity during high-water events. The presence of surface water on watershed boundaries was predicted by the interactions between watershed boundary point elevation relative to the minimum adjacent HUC-12 elevations and watershed boundary point elevation relative to neighboring point elevations (marginal R 2 = 0.94). Our approach can be used to identify potential areas of surface water connectivity between watersheds quickly and easily at a fine spatial scale using readily available, remotely sensed data that can inform conservation and management actions across disciplines.

North Dakota, South Dakota↗
USGS2017

Biological soil crusts: Diminutive communities of potential global importance

Biological soil crusts (biocrusts) are widespread, diverse communities of cyanobacteria, fungi, lichens, and mosses living on soil surfaces, primarily in drylands. Biocrusts can locally govern primary production, soil fertility, hydrology, and surface energy balance, with considerable variation in these functions across alternate community states. Further, these communities have been implicated in Earth system functioning via potential influences on global biogeochemistry and climate. Biocrusts are easily destroyed by disturbances and appear to be exceptionally vulnerable to warming temperatures and altered precipitation inputs, signaling possible losses of dryland functions with global change. Despite these concerns, we lack sufficient spatiotemporal data on biocrust function, cover, and community structure to confidently assess their ecological roles across the extensive dryland biome. Here, we present the case for cross-scale research and restoration efforts coupled with remote-sensing and modeling approaches that improve our collective understanding of biocrust responses to global change and the ecological roles of these diminutive communities at global scales.

Frontiers in Ecology and the Environment↗
USGS2022

Keeping an eye on water quality from the sky

You can learn a lot about rivers, lakes, estuaries, and oceans by looking down at them from the sky. Scientists use a technique called remote sensing to measure the amount of light or heat energy reflected and emitted from the Earth. Sensors can be on satellites or mounted on airplanes, helicopters, or drones. Scientists use this information to map the quality of water in the San Francisco Bay-Delta estuary. Remote sensing helps scientists see where and when there might be problems for human health or for the plants and animals living in the estuary.

California↗
USGS2023

Editorial: Remote sensing of volcanic gas emissions from the ground, air, and space

When magma rises in volcanic systems, volatile species exsolve from the melt and are outgassed to the atmosphere. The melt composition and temperature, depth at which degassing occurs, extent of gas-water-rock interactions, and volume of ascending magma are all factors that determine the composition and rate of gas emissions at the surface. Interpreted in a petrological framework, gas measurements thus provide information on these fundamental parameters of volcanic systems. Volcanic gases have traditionally been sampled in the field and later analyzed with standard laboratory methods, but remote sensing measurements are playing an increasingly central role in characterizing emissions and the volcanoes from which they originate. The 17 contributions in this Research Topic summarize the state-of-the-art in volcanic gas remote sensing and identify key areas in which the field could further improve our understanding of global volcanism and its impact on Earth’s environment in the next decade.

Frontiers in Earth Science↗
USGS2020

A newly emerging thermal area in Yellowstone

Yellowstone is a large restless caldera that contains many dynamic thermal areas that are the surface expression of the deeper magmatic system. In 2018, using a Landsat 8 nighttime thermal infrared image, we discovered the emergence of a new thermal area located near Tern Lake on the northeast margin of the Sour Creek dome. A high-spatial-resolution airborne visible image from August 2017 revealed a large (~33,000 m2) area of recently fallen trees, mostly devoid of vegetation, with bright soil, similar to other nearby thermal areas. Field observations in August 2019 confirmed that this was a steam-heated acid-sulfate thermal area, with an arc-shaped zone of hydrothermally altered soil and heated ground, with surface temperatures of 60-80 °C, several steaming fumaroles, and boiling temperatures (93 °C) just beneath the surface. Fallen trees in contact with warm ground were being carbonized, yet there were some cooler areas with new trees growing. Observations of stressed or dying vegetation from archived satellite and airborne remote sensing data going back to 1994 indicated that this thermal area started emerging around 2000. It increased in size slowly until around 2005, when the radiative heat output started measurably increasing. From 2005 to 2012 it grew more rapidly; and from 2012 through 2019 the growth rate slowed and the heat output stabilized. We predict that this stabilizing trend will continue in the coming years. The initial formation of this new thermal area was not clearly linked to any distinct seismic or geodetic events, although the period of rapid growth partly coincided with a period of rapid local uplift, possibly suggesting a causative relationship. The identification of this emerging thermal area illustrates the importance of satellite thermal infrared imaging combined with high-spatial-resolution remote sensing data and field observations for mapping, measuring, and monitoring Yellowstone's thermal areas. It is also an example of the dynamics we expect to observe within large caldera systems like Yellowstone, where changes in the size and distribution of thermal areas are normal and do not indicate an impending eruption nor any significant changes in the broader magmatic system.

Wyoming↗
USGS2020

Oases of the future? Evaluating springs as potential hydrologic refugia in drying climates

Springs in water-limited landscapes are biodiversity hotspots and keystone ecosystems, disproportionately influencing surrounding landscapes despite their often small areas. Some springs served as evolutionary refugia during previous climate drying, supporting relict species in isolated habitats. Understanding whether springs will provide hydrologic refugia from future climate change is important to biodiversity conservation but complicated by hydrologic variability among springs, data limitations, and multiple non-climate threats to groundwater-dependent ecosystems. Here, we present a conceptual framework for categorizing springs as potentially stable, relative, or transient hydrologic refugia in a drying climate. Clues about refugial capacity of springs can be assembled from diverse approaches, including citizen-science-powered ecohydrologic monitoring, remote sensing, landowner interviews, and environmental tracer analysis. Managers can integrate multiple lines of evidence to predict which springs may become future refugia for species of concern, strengthening the long-term effectiveness of springs conservation and restoration and informing climate adaptation for terrestrial and freshwater species.

Frontiers in Ecology and the Environment↗
USGS2021

Surface flow velocities from space: Particle image velocimetry of satellite video of a large, sediment-laden river

Conventional, field-based streamflow monitoring in remote, inaccessible locations such as Alaska poses logistical challenges. Safety concerns, financial considerations, and a desire to expand water-observing networks make remote sensing an appealing alternative means of collecting hydrologic data. In an ongoing effort to develop non-contact methods for measuring river discharge, we evaluated the potential to estimate surface flow velocities from satellite video of a large, sediment-laden river in Alaska via particle image velocimetry (PIV). In this setting, naturally occurring sediment boil vortices produced distinct water surface features that could be tracked from frame to frame as they were advected by the flow, obviating the need to introduce artificial tracer particles. In this study, we refined an end-to-end workflow that involved stabilization and geo-referencing, image preprocessing, PIV analysis with an ensemble correlation algorithm, and post-processing of PIV output to filter outliers and scale and geo-reference velocity vectors. Applying these procedures to image sequences extracted from satellite video allowed us to produce high resolution surface velocity fields; field measurements of depth-averaged flow velocity were used to assess accuracy. Our results confirmed the importance of preprocessing images to enhance contrast and indicated that lower frame rates (e.g., 0.25 Hz) lead to more reliable velocity estimates because longer capture intervals allow more time for water surface features to translate several pixels between frames, given the relatively coarse spatial resolution of the satellite data. Although agreement between PIV-derived velocity estimates and field measurements was weak ( R 2 = 0.39) on a point-by-point basis, correspondence improved when the PIV output was aggregated to the cross-sectional scale. For example, the correspondence between cross-sectional maximum velocities inferred via remote sensing and measured in the field was much stronger ( R 2 = 0.76), suggesting that satellite video could play a role in measuring river discharge. Examining correlation matrices produced as an intermediate output of the PIV algorithm yielded insight on the interactions between image frame rate and sensor spatial resolution, which must be considered in tandem. Although further research and technological development are needed, measuring surface flow velocities from satellite video could become a viable tool for streamflow monitoring in certain fluvial environments.

Alaska↗