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At least 19 recordsLinked to original sources
USGS2023

Facing our freshwater crisis via fluid and agile communication: A grand challenge

Earth has been labeled the blue planet because of its abundance of water that covers most of its surface, but the majority is salt water in our oceans. Oceans account for ~352 million km 2 or 69% of the planet's surface, land for 150 million km 2 or 29%, and fresh water for 9 million km 2 or 2% ( Shiklomanov, 2000 ). Most of the fresh water is locked away in glaciers and ice sheets on Greenland and Antarctica, with less than a third accessible to biota ( Shiklomanov, 2000 ). This miniscule fraction of fresh water is our most precious natural resource, the foundation for life in terrestrial environments, and humanity depends on it, but the resource faces enormous threats. My aim in this brief editorial is to define the freshwater resource, succinctly summarize the major threats it faces, and underscore recent calls for conservation. My review is cursory, but I call attention to various recent exhaustive reviews. I end with my views on how journals can help advance global freshwater conservation efforts.

Frontiers in Freshwater Science↗
USGS2023

Fish life-history traits predict abundance-occupancy patterns in artificial lakes

Life-history traits of a species have been postulated as a factor in abundance and occupancy patterns. Understanding how traits contribute to the ubiquity and rarity of taxa can facilitate the development of effective conservation policy by establishing a connection between species requirements and resource. The goal was to evaluate fish assemblages in artificial lakes for evidence of the abundance-occupancy patterns reported in natural environments and, if evident, to explore if observed patterns of abundance and occupancy could be attributed to species traits. Fish abundance and occupancy were estimated over 1990–2018 in 22 artificial lakes impounded within the Tennessee River basin, USA. Consistent with reports for many other taxonomic groups in natural environments, there was a positive association amidst 114 fish species between abundance and occupancy in artificial lakes ( R 2 = 0.78). This result indicates that the fish assemblages that develop in these anthropized environments follow the fundamental abundance-occupancy patterns uncovered in natural environments, despite assemblages having been disfigured by the dramatic rearrangement of habitats brought by impoundment. Moreover, a redundancy analysis focusing mostly on reproductive and habitat traits adequately predicted abundance-occupancy patterns of fish assemblages in artificial lakes ( R 2 = 0.69). Species abundance-occupancy is influenced by the interplay between life-history traits and habitat availability, even in artificial lakes, and by extension, possibly other artificial ecosystems.

Alabame, Georgia, Kentucky, Mississippi, North Car↗
USGS2024

Fish conservation in streams of the agrarian Mississippi Alluvial Valley: Conceptual model, management actions, and field verification

The effects of agriculture and flood control practices accrued over more than a century have impaired aquatic habitats and their fish communities in the Mississippi Alluvial Valley, the historic floodplain of the Lower Mississippi River prior to leveeing. As a first step to conservation planning and adaptive management, we developed and tested a conceptual model of how changes to this floodplain have affected stream environments and fish assemblages. The model is deliberately simple in structure because it needs to be understood by stakeholders ranging from engineers to farmers who must remain engaged to ensure effective conservation. Testing involved multivariate correlative analyses that included descriptors of land setting, water quality, and fish assemblages representing 376 stream samples taken over two decades and ranging in Strahler stream order from 1 to 8. The conceptual model was adequately corroborated by empirical data, but with unexplained variability that is not uncommon in field surveys where gear biases, temporal biases, and scale biases prevent accurate characterizations. Our conceptual model distinguishes three types of conservation actions relevant to large agricultural floodplains: reforestation of large parcels and riparian zone conservation, in-channel interventions and connectivity preservation, and flow augmentation. Complete restoration of the floodplain may not be an acceptable option to the agriculture community. However, in most cases the application of even the most basic measures can support the return of sensitive aquatic species. We suggest that together these types of conservation actions can bring improved water properties to impacted reaches, higher reach biodiversity, more intolerant species, and more rheophilic fishes.

Mississippi Alluvial Valle↗
USGS2024

An evaluation of fin ray microchemistry to describe movement of White Sturgeon in the Kootenai River basin: Insights and limitations

Introduction: White Sturgeon Acipenser transmontanus in the Kootenai River basin is listed as endangered in the United States and Canada. Declines have been mainly attributed to poor recruitment exacerbated by the environmental effects of Libby Dam in Montana. Reduced primary production downstream of Libby Dam has been identified as one factor limiting growth of White Sturgeon, thereby limiting natural reproduction through delayed sexual maturity. However, estimating changes in growth over time without knowledge of fish location (i.e., Kootenai River vs. Kootenay Lake) is difficult. The objective of this project was to use microchemistry analysis to describe the movement of White Sturgeon within the Kootenai River basin. Methods: Water samples ( n = 27) and White Sturgeon fin rays ( n = 162) collected in the Kootenai River basin were measured for strontium isotope ( 87 Sr: 86 Sr) ratios using laser ablation multicollector inductively coupled plasma mass spectrometry. All water samples and a subset of fin rays ( n = 8) were also analyzed for trace elements (e.g., Sr, Ba, Mg). Fin ray annuli were measured and tested using knowledge of known age; known locations from physical capture events were assigned to age at capture. Results: Strontium isotope analysis was unable to detect differences in the Kootenai River and Kootenay Lake using water or fin ray samples. The Kootenai River and Kootenay Lake were distinguishable using trace element data from water samples, but not fin rays. The discrepancy with trace elements appears to be associated with the physiology of fin ray growth. Discussion: Although this study did not meet its original objective of describing the movement of White Sturgeon in the Kootenai River basin from fin ray microchemistry, our results provide insight into the potential influence of physiology on microchemistry analysis. In particular, fin ray microchemistry of slow-growing fishes may be possible in freshwater systems with further investigation into the physiological processes associated with growth and the incorporation of elements into calcified structures.

British Columbia, Idaho, Montana↗
USGS2025

Genetics of wild, whirling disease resistant rainbow trout populations in Colorado

Introduction: Myxobolus cerebralis , the parasite responsible for salmonid whirling disease, was unintentionally introduced to and became established in Colorado in the 1990s. Mortality of young-of-year fish due to infection by M. cerebralis resulted in recruitment failure and subsequent significant declines in Rainbow Trout ( Oncorhynchus mykiss ) populations. The complex multistage lifecycle of M. cerebralis makes it difficult to eradicate and manage, and hatchery control strategies do not work in the wild. A viable method that has been utilized for wild populations is enhancing host resistance. Myxobolus cerebralis resistant Rainbow Trout were discovered at a hatchery in Germany and subsequently incorporated into Colorado's brood stock program. Since 2004, M. cerebralis resistant strains have been stocked into all major Colorado coldwater drainages to re-establish Rainbow Trout populations after whirling disease-related declines, with documented survival and reproduction of stocked disease resistant fish. Methods and results: Genetic population assignment tests (via putatively neutral microsatellite markers) were used to monitor the stocked populations and indicated that, after only a few years, many of the individuals in these populations unexpectedly assigned to genetic strains that were historically susceptible to M. cerebralis . To further investigate the genetic composition of these fish, a single nucleotide polymorphism (SNP) panel was used to determine the percent genetic composition of resistant strain in these individuals. Microsatellites and SNPs provided similar results, indicating a low percentage of ancestry from the resistant strain in these fish, but they continued to survive exposure to M. cerebralis , suggesting that these individuals possessed genetic loci necessary for resistance. Finally, a quantitative trait locus (QTL) region (termed WDRES-9) was used to identify individuals with alleles associated with disease resistance. Implementation of the WDRES-9 QTL test allowed for more accurate determination of M. cerebralis resistant individuals within wild populations and better described their variability in resistance.

Colorado↗
USGS2025

A framework tool that applies weight-of-evidence integration to the analysis of existing datasets to guide freshwater conservation

The overarching issue we address here is how to extract clear and actionable ecological and management insights from real-world field data that often do not satisfy traditional statistical assumptions. Toward this goal, we developed a general 12+6 step adaptive management framework tool. We applied this framework tool to existing biodiversity monitoring data to create a proof-of-concept result that addresses the overarching question of “ why might a specific native stream fish taxon be present or absent at specific locations? ” Our multi-step framework tool links established steps and steps that are unique to our framework through weight-of evidence (WOE) integration, an approach that combines quantitative results from multiple visualization and statistical procedures. The systematic use of all steps in our framework can provide improved conservation outcomes compared to a single analysis. Advantages accrue from our approach because our framework tool refines the overarching goal into related sub-questions, applies a specific quantitative procedure to each sub-step, combines results from all sub-questions using a WOE integration, identifies testable questions that elucidate ambiguities and gaps revealed through WOE integration, and proposes practical field methods for obtaining this clarifying information through future research and data collections. The process of considering multiple visualizations and analyses as individual pieces of a shared puzzle offers a new way to approach the use of existing data. Our team-based approach transforms the collection and analysis of existing data into a series of field tests that can guide future actions (e.g., data collection-analysis events, restoration initiatives, research). Habitat and impact regressors will vary with taxa and system, but our structured process tool has broad generality for a range of conservation issues in which freshwater systems are threatened by human impacts.

Kansas↗
USGS2025

Upriver migrating sea lamprey exhibit similar responses to hydrodynamic features as other up and downriver-moving species

Identifying commonalities in how fish navigate rivers near infrastructure will enhance water operations and design by improving our ability to predict engineering outcomes (e.g., barrier construction/removal, fish passage installation) in novel settings before the cost of real-world implementation. Evidence from intermediate-scale computer models (time scales of minutes to days and spatial scales <2 km) suggests that fish movement behavior in rivers is frequently governed by responses to one or more of the following hydrodynamic features: (1) flow direction (i.e., rheotaxis), (2) flow velocity magnitude, (3) turbulence, and (4) depth, plus (5) the integration of information over recent time periods (i.e., memory/experience). However, the lack of consistent modeling approaches, infrequent assessment of each response in isolation and combination, and a focus on a limited number of species means the generality of these responses is uncertain. We use a computer model, specifically a pattern-oriented modeling approach incorporating individual based models (IBMs), to apply responses to the four hydrodynamic features plus memory/experience in different combinations to study their value for reproducing the movement of an infrequently modeled species and lifestage, upriver migrating adult sea lamprey, Petromyzon marinus . The study site was the region downstream of the Sault Ste. Marie lock and dam complex located between Canada and the U.S.A on the St. Marys River joining Lake Superior and Lake Huron. Our analysis indicates that rheotaxis and a response to velocity magnitude as well as recent past experience improve sea lamprey spatio-temporal movement prediction compared to other, simpler forms of modeled behavior. Sea lamprey movement is also biased toward lower levels of turbulence (e.g., turbulent kinetic energy) or its precursor (i.e., the spatial gradient in water speed). A response to water depth was not found to be important, but the modeled domain was two-dimensional which limited our assessment. As similar responses to hydrodynamic features are found in very different fish, commonalities appear to underlie river navigation across a range of species and life stages that share the goal-oriented behavior of upriver and downriver movement. The systematic approach of our analysis highlights the accuracy trade-offs of each response, individually and in combination, that often accompany alternative behavioral formulations in a computer model of fish movement. The model structure provides a framework to which future findings from the analyses of additional species in different contexts can be added.

Sault Ste. Marie lock and dam complex in the St. M↗
USGS2025

Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California.

Introduction: The Sacramento-San Joaquin River system (SSJ) of California includes both riverine, delta, and estuarine habitats and is among the most modified aquatic ecosystems in the United States. Water development projects in the system are associated with declines of many native species, including White Sturgeon Acipenser transmontanus . Methods: We used White Sturgeon pectoral fin rays collected from 1983 to 2016 throughout the SSJ to assess long-term changes in growth and associations with thermal and hydrological conditions (i.e., temperature, discharge, salinity). Age and growth were estimated from 1,897 White Sturgeon varying in fork length from 25 to 210 cm and from age 0 to 33. Results: Age structure varied through time with the oldest fish generally sampled during the mid-1980s. Growth of White Sturgeon in 1951–1970 was slower than growth of fish in 1971–1990 and 1991–2012. Growth of White Sturgeon during 1991–2012 was ~10% higher than during other time periods. Discussion: Little variation in growth was explained by environmental covariates, suggesting that annual growth was likely influenced by factors not measured in our study. Alternatively, population structure and movement behavior of White Sturgeon in the SSJ may be such that the scale (i.e., spatial or temporal) of available habitat covariates was mismatched to the scale at which growth of White Sturgeon responds. Increased growth in recent times may be partly due to density-dependent processes in association with substantial declines in White Sturgeon population abundance over the last several decades. This research provides important information on long-term patterns in growth that contributes to the conservation and management of White Sturgeon in the SSJ and beyond.

California↗
USGS2025

Identifying novel Sea Lamprey (Petromyzon marinus) spawning areas in a large unimpounded river system

Introduction: Despite the success of the Sea Lamprey Control Program (SLCP) in reducing Sea Lamprey ( Petromyzon marinus ) abundance throughout the Laurentian Great Lakes, control remains a significant challenge in the Saint Clair-Detroit River System (SCDRS) due to the system's size, flow dynamics, and amount of potentially suitable spawning habitat. Methods: We used acoustic telemetry to identify repeated patterns in habitat use, presumed spawning areas, and migratory routes for 271 acoustic-tagged Sea Lamprey in the SCDRS during the 2016 and 2017 spawning seasons. Results: Sixty-nine percent of tagged Sea Lamprey appeared to spawn in the Saint Clair River with many individuals displaying commonly shared movement histories in terms of timing and channel use. Probable spawning locations were associated with the main river channel upstream of major bifurcations (e.g., Stag and Fawn Islands) in the Saint Clair River and overlapped with areas of high bottom flow. Discussion: Selection for low flow refugia during migration appears water temperature dependent. Traditional control methods are likely to be inefficient in the SCDRS, highlighting the need for novel supplemental strategies tailored to large river systems.

Michigan, Ontario↗
USGS2026

Invasive carps versus native fish: A first-pass trait-based index for assessing competition threats.

Introduction: Bigheaded carp ( Hypophthalmichthys spp.) are invasive fish in the Mississippi River basin. Their rapid proliferation has raised concerns about exploitative competition with native fishes, with consequences that remain incompletely understood. We aimed to identify native species most susceptible to competition based on overlap with bigheaded carp in dietary and habitat traits. Methods: We used an established fish traits database to quantify dietary and habitat overlap between bigheaded carp and 100 native fish species. We then integrated dietary and habitat overlap into a composite competition index. Results: Dietary similarity with the native assemblage exceeded habitat similarity, suggesting that while competition with some native species may occur, it may often be limited by spatial separation. Dietary and habitat similarity coefficients were not correlated, indicating that strong dietary overlap did not necessarily coincide with similar habitat use (and vice versa). Approximately 20% of species were classified as high competition risk. The highest-risk species included bigmouth buffalo ( Ictiobus cyprinellus ), threadfin shad ( Dorosoma petenense ), black redhorse ( Moxostoma duquesnii ), bluntnose minnow ( Pimephales notatus ), highfin carpsucker ( Carpiodes velifer ), and gizzard shad ( Dorosoma cepedianum ). Discussion: Although trait-based predictions have limitations, our results are consistent with empirically documented interactions and provide a rapid, first-pass assessment of potential competitive vulnerability. Dietary overlap, habitat overlap, and the derived competition index offer actionable decision-support for managing potential competition between bigheaded carp and native species. We included ten practical recommendations to translate predictions into conservation and management actions.

Alabama, Kentucky, Mississippi, North Carolina, So↗
USGS2020

Estimating late 19th century hydrology in the Greater Everglades Ecosystem: An integration of paleoecologic data and models

Determining hydrologic conditions prior to instrumental records is a challenge for restoration of freshwater ecosystems worldwide. Paleoecologic data provide this information on past conditions and when these data are used to adjust hydrologic models, allow conditions to be hindcast that may not be directly estimated from the paleo-data alone. In this context, the paleo-data provide real-world estimates as input to the models. Restoration of the Greater Everglades Ecosystem requires this understanding of the hydrology of the natural system prior to significant alterations due to water management and land use. Large scale models such as the Natural Systems Model (NSM 4.6.2) have been used by the South Florida Water Management District and other agencies responsible for restoration to estimate past hydrologic conditions; however, these models typically portray a drier natural system for the beginning of the 20th century than what is indicated by paleoecologic analyses and historical data. The purpose of this study is to estimate pre-20th century water levels, hydroperiods and flow in the freshwater wetlands of the Everglades by using pollen assemblage data in three sediment cores to adjust the Natural Systems Model. This study is designed to further test estimates of flow through the Everglades derived from analysis of sediment cores collected in Florida Bay. The results demonstrate that the NSM 4.6.2 underestimates water levels and hydroperiods in the Everglades compared to the paleo-adjusted NSM 4.6.2 model outputs. Flow models that use the paleo-adjusted water levels as input indicate flow through Shark River Slough in the late 19th century was approximately two times flow between 1990 and 2000, and flow through Taylor Slough was approximately three times flow between 1990 and 2000. The flow estimates derived from this study agree with the estimates derived from earlier studies using estuarine cores. This integration of paleoecologic information and hydrologic models provides resource managers with the best available estimates of past conditions and allows them to set realistic targets for restoration of freshwater ecosystems.

Florida↗
USGS2016

Seasonal flows of international British Columbia-Alaska rivers: The nonlinear influence of ocean-atmosphere circulation patterns

The northern portion of the Pacific coastal temperate rainforest (PCTR) is one of the least anthropogenically modified regions on earth and remains in many respects a frontier area to science. Rivers crossing the northern PCTR, which is also an international boundary region between British Columbia, Canada and Alaska, USA, deliver large freshwater and biogeochemical fluxes to the Gulf of Alaska and establish linkages between coastal and continental ecosystems. We evaluate interannual flow variability in three transboundary PCTR watersheds in response to El Ni&ntilde;o-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), Arctic Oscillation (AO), and North Pacific Gyre Oscillation (NPGO). Historical hydroclimatic datasets from both Canada and the USA are analyzed using an up-to-date methodological suite accommodating both seasonally transient and highly nonlinear teleconnections. We find that streamflow teleconnections occur over particular seasonal windows reflecting the intersection of specific atmospheric and terrestrial hydrologic processes. The strongest signal is a snowmelt-driven flow timing shift resulting from ENSO- and PDO-associated temperature anomalies. Autumn rainfall runoff is also modulated by these climate modes, and a glacier-mediated teleconnection contributes to a late-summer ENSO-flow association. Teleconnections between AO and freshet flows reflect corresponding temperature and precipitation anomalies. A coherent NPGO signal is not clearly evident in streamflow. Linear and monotonically nonlinear teleconnections were widely identified, with less evidence for the parabolic effects that can play an important role elsewhere. The streamflow teleconnections did not vary greatly between hydrometric stations, presumably reflecting broad similarities in watershed characteristics. These results establish a regional foundation for both transboundary water management and studies of long-term hydroclimatic and environmental change.

Alaska, British Columbia↗
USGS2026

Integrating habitat suitability and climate constraints to predict nonnative fish invasion risk for U.S. streams and inland lakes

Introduction: Nonnative fishes in streams and inland lakes can substantially alter aquatic ecosystems by degrading habitat conditions, competing with native species, and restructuring food webs. Identifying invasion hotspots can inform proactive management and prevention of nonnative species establishment. Methods: In this study, we identified streams and lakes across the conterminous United States that are vulnerable to invasion by 18 nonnative stream and 28 nonnative lake fish species. Habitat suitability models were developed separately for stream and lake species across nine ecoregions using natural and anthropogenic predictors, and species occurrences were predicted by integrating model results with climate match scores based on comparisons between environmental conditions in species’ native and potential nonnative ranges. We classified areas with both high habitat suitability and strong climate similarity as having high invasion potential and generated hotspot maps by stacking species-level predictions. Results: Florida exhibits the highest invasion risk for both habitat types. Stream hotspots were concentrated near major metropolitan areas, whereas lake hotspots were more widely distributed across the Great Lakes basin and the northeastern U.S. Twelve species were predicted to invade both habitat types, with goldfish ( Carassius auratus ) and pirapitinga ( Piaractus brachypomus ) showing particularly high invasion potential. Discussion: These findings provide a comprehensive assessment of nonnative freshwater fish invasion risk and support targeted monitoring and management strategies.

conterminous United States↗
USGS2018

Recent advances in environmental flows science and water management—Innovation in the Anthropocene

The implementation of environmental flow regimes offers a promising means to protect and restore riverine, wetland and estuarine ecosystems, their critical environmental services and cultural/societal values. This Special Issue expands the scope of environmental flows and water science in theory and practice, offering 20 papers from academics, agency researchers and non‐governmental organisations, each with fresh perspectives on the science and management of environmental water allocations. Contributions confront the grand challenge for environmental flows and water management in the Anthropocene—the urgent need for innovations that will help to sustain the innate resilience of social–ecological systems under dynamic and uncertain environmental and societal futures. Basin‐scale and regional assessments of flow requirements mark a necessary advance in environmental water science in the face of rapid changes in water‐resource management activities worldwide (e.g. increases in dams, diversions, retention and reuse). Techniques for regional‐scale hydrological and ecohydrological modelling support ecological risk assessment and identification of priority flow management and river restoration actions. Changing flood–drought cycles, long‐term climatic shifts and associated effects on hydrological, thermal and water quality regimes add enormous uncertainty to the prediction of future ecological outcomes, regardless of environmental water allocations. An improved capacity to predict the trajectories of ecological change in rivers degraded by legacies of past impact interacting with current conditions and future climate change is essential. Otherwise, we risk unrealistic expectations from restoration of river and estuarine flow regimes. A more robust, dynamic and predictive approach to environmental water science is emerging. It encourages the measurement of process rates (e.g. birth rate, colonisation rate) and species traits (e.g. physiological requirements, morphological adaptations) as well as ecosystem states (e.g. species richness, assemblage structure), as the variables representing ecological responses to flow variability and environmental water allocations. Another necessary development is the incorporation of other environmental variables such as water temperature and sedimentary processes in flow–ecological response models. Based on contributions to this Special Issue, several recent compilations and the wider literature, we identify six major scientific challenges for further exploration, and seven themes for advancing the management of environmental water. We see the emerging frontier of environmental flows and water science as urgent and challenging, with numerous opportunities for reinvigorated science and methodological innovation in the expanding enterprise of environmental water linked to ecological sustainability and social well‐being.

Freshwater Biology↗
USGS2020

Oases of the future? Evaluating springs as potential hydrologic refugia in drying climates

Springs in water-limited landscapes are biodiversity hotspots and keystone ecosystems, disproportionately influencing surrounding landscapes despite their often small areas. Some springs served as evolutionary refugia during previous climate drying, supporting relict species in isolated habitats. Understanding whether springs will provide hydrologic refugia from future climate change is important to biodiversity conservation but complicated by hydrologic variability among springs, data limitations, and multiple non-climate threats to groundwater-dependent ecosystems. Here, we present a conceptual framework for categorizing springs as potentially stable, relative, or transient hydrologic refugia in a drying climate. Clues about refugial capacity of springs can be assembled from diverse approaches, including citizen-science-powered ecohydrologic monitoring, remote sensing, landowner interviews, and environmental tracer analysis. Managers can integrate multiple lines of evidence to predict which springs may become future refugia for species of concern, strengthening the long-term effectiveness of springs conservation and restoration and informing climate adaptation for terrestrial and freshwater species.

Frontiers in Ecology and the Environment↗
USGS2021

Integrating high-resolution coastal acidification monitoring data across seven United States estuaries

Beginning in 2015, the United States Environmental Protection Agency’s (EPA’s) National Estuary Program (NEP) started a collaboration with partners in seven estuaries along the East Coast (Barnegat Bay; Casco Bay), West Coast (Santa Monica Bay; San Francisco Bay; Tillamook Bay), and the Gulf of Mexico (GOM) Coast (Tampa Bay; Mission-Aransas Estuary) of the United States to expand the use of autonomous monitoring of partial pressure of carbon dioxide ( p CO 2 ) and pH. Analysis of high-frequency (hourly to sub-hourly) coastal acidification data including p CO 2 , pH, temperature, salinity, and dissolved oxygen (DO) indicate that the sensors effectively captured key parameter measurements under challenging environmental conditions, allowing for an initial characterization of daily to seasonal trends in carbonate chemistry across a range of estuarine settings. Multi-year monitoring showed that across all water bodies temperature and p CO 2 covaried, suggesting that p CO 2 variability was governed, in part, by seasonal temperature changes with average p CO 2 being lower in cooler, winter months and higher in warmer, summer months. Furthermore, the timing of seasonal shifts towards increasing (or decreasing) p CO 2 varied by location and appears to be related to regional climate conditions. Specifically, p CO 2 increases began earlier in the year in warmer water, lower latitude water bodies in the GOM (Tampa Bay; Mission-Aransas Estuary) as compared with cooler water, higher latitude water bodies in the northeast (Barnegat Bay; Casco Bay), and upwelling-influenced West Coast water bodies (Tillamook Bay; Santa Monica Bay; San Francisco Bay). Results suggest that both thermal and non-thermal influences are important drivers of p CO 2 in Tampa Bay and Mission-Aransas Estuary. Conversely, non-thermal processes, most notably the biogeochemical structure of coastal upwelling, appear to be largely responsible for the observed p CO 2 values in West Coast water bodies. The co-occurrence of high salinity, high p CO 2 , low DO, and low temperature water in Santa Monica Bay and San Francisco Bay characterize the coastal upwelling paradigm that is also evident in Tillamook Bay when upwelling dominates freshwater runoff and local processes. These data demonstrate that high-quality carbonate chemistry observations can be recorded from estuarine environments using autonomous sensors originally designed for open-ocean settings.

California, Florida, Maine, New Jersey, Oregon, Te↗
USGS2024

Nutrient and carbonate chemistry patterns associated with Karenia brevis blooms in three West Florida Shelf estuaries 2020-2023

Ocean acidification (OA) driven by eutrophication, riverine discharge, and other threats from local population growth that affect the inorganic carbonate system is already affecting the eastern Gulf of Mexico. Long-term declines in pH of ~ -0.001 pH units yr -1 have been observed in many southwest Florida estuaries over the past few decades. Coastal and estuarine waters of southwest Florida experience high biomass harmful algal blooms (HABs) of the dinoflagellate Karenia brevis nearly every year; and these blooms have the potential to impact and be impacted by seasonal to interannual patterns of carbonate chemistry. Sampling was conducted seasonally along three estuarine transects (Tampa Bay, Charlotte Harbor, Caloosahatchee River) between May 2020 and May 2023 to obtain baseline measurements of carbonate chemistry prior to, during, and following K. brevis blooms. Conductivity, temperature and depth data and discrete water samples for K. brevis cell abundance, nutrients, and carbonate chemistry (total alkalinity, dissolved inorganic carbonate (DIC), p CO 2, and pH T were evaluated to identify seasonal patterns and linkages among carbonate system variables, nutrients, and K. brevis blooms. Karenia brevis blooms were observed during six samplings, and highest p CO 2 and lowest pH T was observed either during or after blooms in all three estuaries. Highest average pH and lowest p CO 2 were observed in Tampa Bay. In all three estuaries, average DIC and pH T were higher and p CO 2 was lower during dry seasons than wet seasons. There was strong influence of net community calcification (NCC) and net community production (NCP) on the carbonate system; and NCC : NCP ratios in Tampa Bay, Charlotte Harbor, and the Caloosahatchee River were 0.83, 0.93, and 1.02, respectively. Linear relationships between salinity and dissolved ammonium, phosphate, and nitrate indicate strong influence of freshwater inflow from river input and discharge events on nutrient concentrations. This study is a first step towards connecting observations of high biomass blooms like those caused by K. brevis and alterations of carbonate chemistry in Southwest Florida. Our study demonstrates the need for integrated monitoring to improve understanding of interactions among the carbonate system, HABs, water quality, and acidification over local to regional spatial scales and event to decadal time scales.

Florida↗
USGS2020

Emergence of a zoonotic pathogen in a coastal marine sentinel: Capillaria hepatica (syn. Calodium hepaticum)-associated hepatitis in southern sea otters (Enhydra lutris nereis)

Capillaria hepatica is a globally distributed zoonotic nematode parasite that most commonly infects feral and native rats. Soil contact, pica, and living in close proximity to rat populations are risk factors for human infection. Larval nematodes and eggs that were morphologically consistent with C. hepatica were observed microscopically in livers of stranded southern sea otters ( Enhydra lutris nereis ) from California. Large (90–100 × 45–55 μm), barrel-shaped non-embryonated parasite eggs with large polar prominences and a roughened or striated surface, or 105–120 μm diameter larval aphasmid nematode profiles with a prominent stichosome and hypodermal bands were observed in the livers of three otters. The liver of a fourth animal exhibited serpiginous tracts of necrosis, micro-cavitation and pleocellular inflammation, with intralesional linear eosinophilic material that resembled cuticle from degenerating metazoan parasites. Capillaria hepatica -associated hepatitis and capsular adhesions were the cause of death for one otter, and parasite-associated liver lesions were observed in all cases. All infected otters were adult females that stranded from 2006 through 2016 at multiple sites along the central California coast. All cases stranded from December through May; during and soon after peak seasonal precipitation and land-sea runoff in California. This same seasonal pattern has been reported for other land-based parasites infecting southern sea otters. Neither C. hepatica , nor any similar nematodes have been reported from marine mammals, and southern sea otters are not typical hosts for C. hepatica or any other nematode parasites. The most likely route of exposure was via freshwater runoff containing embryonated eggs liberated from predated or decomposing terrestrial hosts, especially rats. Similar to the land-based parasites Toxoplasma gondii and Sarcocystis neurona , C. hepatica eggs may be concentrated and transmitted through filter-feeding marine invertebrates that serve as southern sea otter prey, which may also pose an unrecognized public health risk for people who consume these species.

California↗