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Field and laboratory procedures used in a soil chronosequence study
In 1978, the late Denis Marchand initiated a research project entitled "Soil Correlation and Dating at the U.S. Geological Survey" to determine the usefulness of soils in solving geologic problems. Marchand proposed to establish soil chronosequences that could be dated independently of soil development by using radiometric and other numeric dating methods. In addition, by comparing dated chronosequences in different environments, rates of soil development could be studied and compared among varying climates and mineralogical conditions. The project was fundamental in documenting the value of soils in studies of mapping, correlating, and dating late Cenozoic deposits and in studying soil genesis. All published reports by members of the project are included in the bibliography. The project demanded that methods be adapted or developed to ensure comparability over a wide variation in soil types. Emphasis was placed on obtaining professional expertise and on establishing consistent techniques, especially for the field, laboratory, and data-compilation methods. Since 1978, twelve chronosequences have been sampled and analyzed by members of this project, and methods have been established and used consistently for analysis of the samples. The goals of this report are to: Document the methods used for the study on soil chronosequences, Present the results of tests that were run for precision, accuracy, and effectiveness, and Discuss our modifications to standard procedures. Many of the methods presented herein are standard and have been reported elsewhere. However, we assume less prior analytical knowledge in our descriptions; thus, the manual should be easy to follow for the inexperienced analyst. Each chapter presents one or more references of the basic principle, an equipment and reagents list, and the detailed procedure. In some chapters this is followed by additional remarks or example calculations. The flow diagram in figure 1 outlines the step-by-step procedures used to obtain and analyze soil samples for this study. The soils analyzed had a wide range of characteristics (such as clay content, mineralogy, salinity, and acidity). Initially, a major task was to test and select methods that could be applied and interpreted similarly for the various types of soils. Tests were conducted to establish the effectiveness and comparability of analytical techniques, and the data for such tests are included in figures, tables, and discussions. In addition, many replicate analyses of samples have established a "standard error" or "coefficient of variance" which indicates the average reproducibility of each laboratory procedure. These averaged errors are reported as percentage of a given value. For example, in particle-size determination, 3 percent error for 10 percent clay content equals 10 ± 0.3 percent clay. The error sources were examined to determine, for example, if the error in particle-size determination was dependent on clay content. No such biases were found, and data are reported as percent error in the text and in tables of reproducibility.
Identifying the origin of waterbird carcasses in Lake Michigan using a neural network source tracking model
Avian botulism type E is responsible for extensive waterbird mortality on the Great Lakes, yet the actual site of toxin exposure remains unclear. Beached carcasses are often used to describe the spatial aspects of botulism mortality outbreaks, but lack specificity of offshore toxin source locations. We detail methodology for developing a neural network model used for predicting waterbird carcass motions in response to wind, wave, and current forcing, in lieu of a complex analytical relationship. This empirically trained model uses current velocity, wind velocity, significant wave height, and wave peak period in Lake Michigan simulated by the Great Lakes Coastal Forecasting System. A detailed procedure is further developed to use the model for back-tracing waterbird carcasses found on beaches in various parts of Lake Michigan, which was validated using drift data for radiomarked common loon ( Gavia immer ) carcasses deployed at a variety of locations in northern Lake Michigan during September and October of 2013. The back-tracing model was further used on 22 non-radiomarked common loon carcasses found along the shoreline of northern Lake Michigan in October and November of 2012. The model-estimated origins of those cases pointed to some common source locations offshore that coincide with concentrations of common loons observed during aerial surveys. The neural network source tracking model provides a promising approach for identifying locations of botulinum neurotoxin type E intoxication and, in turn, contributes to developing an understanding of the dynamics of toxin production and possible trophic transfer pathways.
Protocol for monitoring and analyzing pheromone-mediated behavioral response of sea lamprey in a natural system
Olfactory-mediated behaviors in fish are often examined in artificial microcosms that enable well-controlled treatments but fail to replicate environmental and social contexts. However, observing these behaviors in nature poses challenges. Here, we describe a protocol for recording sea lamprey (Petromyzon marinus) behaviors in a natural system. We describe steps for administering and verifying accurate odorant concentrations, surveying sea lamprey abundance, and tracking sea lamprey movements. We also detail procedures to analyze treatment effects on pheromone-mediated spawning in a high-density population.
How to overcome inter-electrode variability and instability to quantify dissolved oxygen, Fe(II), mn(II), and S(−II) in undisturbed soils and sediments using voltammetry
Background - Although uniquely capable of measuring multiple redox constituents nearly simultaneously with no or minimal sample pretreatment, voltammetry is currently underutilized in characterizing redox conditions in aquatic and terrestrial systems. Investigation of undisturbed media such as pore water requires a solid-state electrode, and such electrodes can be difficult to fabricate reproducibly. An approach to determine the concentrations of electroactive constituents using indirectly calibrated electrodes has been developed, but the protocol for and accuracy of this approach—the pilot ion method—has not been documented in detail. Results - A detailed procedure for testing electrode quality is provided, and the application and limitations of the pilot ion method have been documented. To quantify Fe(II) and Mn(II), subtraction of non-linear baseline functions from voltammetric signals produced better calibration curves than did linear baselines, enabled lower detection limits and reliable deconvolution of overlapping signals, and was successfully applied to sediment pore water signals. We observed that electrode sensitivities often vary by tens of percent, and that the sensitivity declines over time. The ratio of calibration slopes of Mn(II) to Fe(II) varied by no more than 11% from one Hg/Au electrode to another and Fe(II) concentrations predicted by the Mn(II) pilot ion were, on average, 13% different from their actual values. However, concentration predictions by the pilot ion method were worse for less than 15 μM Fe(II) (46% different on average). The ratio of calibration slopes of Mn(II) to S(−II) varied by almost 20% from one Hg/Au electrode to another, and S(−II) predicted concentrations were as much as 58% different from their actual values. These predictions of Fe(II) and S(−II) concentrations indicate that the accuracy of the pilot ion method depends on how independent calibration slope ratios are from the electrode used. At medium-to-high concentration for the ocean, naturally derived dissolved organic carbon did not significantly affect the baseline-corrected electrode response of Mn(II) and Fe(II), but did significantly affect the response of S(−II). Conclusions - Despite their intrinsic variability, Hg/Au electrodes fabricated by hand can be used to quantify O2, S(−II), Fe(II), and Mn(II) without calibrating every electrode for every constituent of interest. The pilot ion method can achieve accuracies to within 20% or less, provided that the underlying principle—the independence of slope ratios—is demonstrated for all voltammetric techniques used, and effects of the physicochemical properties of the system on voltammetric signals are addressed through baseline subtraction.
The U.S.G.S. phosphate-fluoride-iodate method for the determination of very small amounts of thorium in naturally occurring materials
Detailed procedures are presented for the determination of very small percentages of thorium. The methods are designed to determine 0.001% of thorium oxide as the lower limit and are applicable to nearly all types of rocks. For quantities below a milligram of ThO 2 , the thorium is determined nephelometrically as the iodate or photemetrically with p-dimethylamineasephenylarsonic acid. For quantities of thorium above one milligram of ThO 2 , the thorium is determined gravimetrically. A discussion of the important feature of the methods and a summary of the more important experimental work that lead to the adoption of the procedures.
U.S. Geological Survey Library classification system
The U.S. Geological Survey library classification system has been designed for an earth science library. It is a tool for assigning classification numbers to earth science and allied pure science library materials in order to collect these materials into related subject groups on the library shelves and arrange them alphabetically by author and title. It can also be used as a retrieval system to access these materials through the subject and visible geographic classification numbers. The classification scheme has been developed over the years since 1904 to meet the ever-changing needs of increased specialization and new areas of study in the earth sciences. This system contains seven schedules: Subject schedule Geological survey schedule Earth science periodical schedule Government documents periodical schedule General science periodical schedule Earth science maps schedule Geographic schedule A geographic number, from the geographic schedule, is distinguished from other numbers in the system in that it is always enclosed in parentheses; for example, (200) is the geographic number for the United States. The geographic number is used in conjunction with the six other previously listed schedules, and it represents slightly different nuances of meanings, in respect to geographic locale, for each schedule. When used with a subject number, the geographic number indicates the country, state, province, or region in which the research was made. The subject number, 203, geology, when combined with the geographic number, (200), for example 203(200), is the classification number for library materials on the geology of the United States. The geographic number, combined with the capital letter G, for example, G(211), is the classification number for an earth science periodical issued by a geological association or university geology department in the State of Maine. When the letter S is combined with a geographic number, for example, S(276), it represents a general science periodical for a university or association in California. When the letter P is combined with a geographic number, for example, P(200), it represents a governmental periodical issued by the United States Federal Government. Geographic numbers standing alone represent classification numbers for the publications of geological surveys; for example, (200) represents publications of the U.S. Geological Survey. Map call numbers have a geographic number preceded by the capital letter M, followed by an abbreviated subject number. For example: M(200)2 where: M = Map (200) = Geographic region of the United States 2 = Abbreviation for the subject number 203— geology. The introduction, which follows this abstract, provides detailed procedures on the construction of complete call numbers for works falling into the framework of the aforesaid classification schedules. The tables following the introduction can be quickly accessed through the use of the newly expanded subject index. The purpose of this publication is to provide the earth science community with a classification and retrieval system for earth science materials, to provide sufficient explanation of its structure and use, and to enable library staff and clientele to classify or access research materials in a library collection.
Users guide for the Water Resources Division bibliographic retrieval and report generation system
The WRDBIB Retrieval and Report-generation system has been developed by applying Multitrieve (CSD 1980, Reston) software to bibliographic data files. The WRDBIB data base includes some 9 ,000 records containing bibliographic citations and descriptors of WRD reports released for publication during 1968-1982. The data base is resident in the Reston Multics computer and may be accessed by registered Multics users in the field. The WRDBIB Users Guide provides detailed procedures on how to run retrieval programs using WRDBIB library files, and how to prepare custom bibliographic reports and author indexes. Users may search the WRDBIB data base on the following variable fields as described in the Data Dictionary: Authors, organizational source, title, citation, publication year, descriptors, and the WRSIC (accession) number. The Users Guide provides ample examples of program runs illustrating various retrieval and report generation aspects. Appendices include Multics access and file manipulation procedures; a ' Glossary of Selected Terms'; and a complete ' Retrieval Session ' with step-by-step outlines. (USGS)
The microgravimetric determination of acid-insoluble impurities in the complete analysis of small samples of acid-soluble minerals
The acid-insoluble impurities of small samples of minerals are determined by a microgravimetric procedure. A Schwarz von Bergkampf glass filter stick with paper filter medium is used to separate the insoluble material. The filtration apparatus and procedural details are described.
Method and importance of obtaining humic and fulvic acids of high purity
A detailed procedure incorporating centrifugation, pressure filtration, dialysis, resin exchange, and freeze drying is given for the extraction and purification of fulvic and humic acids from soils and sediments. By use of the procedure humic acids have been prepared which have less than 0.22 percent ash. The isolation of relatively ash-free natural organic matter preparations is an essential prerequisite to the characterization of organic reactivity in natural systems. Inorganic impurities of amorphous and crystalline clay minerals and various inorganic metal ions often lead to numerous complications and errors during experimentation with organic matter because the inorganic substances associated with the organic phase cause variable reactivity of the organic substances.
Guidelines on preparedness before, during, and after an ashfall
This document has been prepared by the International Volcanic Health Hazard Network (IVHHN), Cities and Volcanoes Commission, GNS Science and the United States Geological Survey (USGS) to promote the safety of those who experience volcanic ashfall. It details procedures to follow if warning of a volcanic ashfall is given, recommends what to do during ashfall, and what methods are most effective for cleaning up volcanic ash after the event.
Standard operating procedures for collection of soil and sediment samples for the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study
An understanding of the effects on human and ecological health brought by major coastal storms or flooding events is typically limited because of a lack of regionally consistent baseline and trends data in locations proximal to potential contaminant sources and mitigation activities, sensitive ecosystems, and recreational facilities where exposures are probable. In an attempt to close this gap, the U.S. Geological Survey (USGS) has implemented the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study to collect regional sediment-quality data prior to and in response to future coastal storms. The standard operating procedure (SOP) detailed in this document serves as the sample-collection protocol for the SCoRR strategy by providing step-by-step instructions for site preparation, sample collection and processing, and shipping of soil and surficial sediment (for example, bed sediment, marsh sediment, or beach material). The objectives of the SCoRR strategy pilot study are (1) to create a baseline of soil-, sand-, marsh sediment-, and bed-sediment-quality data from sites located in the coastal counties from Maine to Virginia based on their potential risk of being contaminated in the event of a major coastal storm or flooding (defined as Resiliency mode); and (2) respond to major coastal storms and flooding by reoccupying select baseline sites and sampling within days of the event (defined as Response mode). For both modes, samples are collected in a consistent manner to minimize bias and maximize quality control by ensuring that all sampling personnel across the region collect, document, and process soil and sediment samples following the procedures outlined in this SOP. Samples are analyzed using four USGS-developed screening methods—inorganic geochemistry, organic geochemistry, pathogens, and biological assays—which are also outlined in this SOP. Because the SCoRR strategy employs a multi-metric approach for sample analyses, this protocol expands upon and reconciles differences in the sample collection protocols outlined in the USGS “National Field Manual for the Collection of Water-Quality Data,” which should be used in conjunction with this SOP. A new data entry and sample tracking system also is presented to ensure all relevant data and metadata are gathered at the sample locations and in the laboratories.
A standard operating procedure for the surgical implantation of transmitters in juvenile salmonids
Biotelemetry is a useful tool to monitor the movements of animals and is widely applied in fisheries research. Radio or acoustic technology can be used, depending on the study design and the environmental conditions in the study area. A broad definition of telemetry also includes the use of Passive Integrated Transponder (PIT) tags, either separately or with a radio or acoustic transmitter. To use telemetry, fish must be equipped with a transmitter. Although there are several attachment procedures available, surgical implantation of transmitters in the abdominal cavity is recognized as the best technique for long-term telemetry studies in general (Stasko and Pincock, 1977; Winter, 1996; Jepsen, 2003), and specifically for juvenile salmonids, Oncorhynchus spp. (Adams and others, 1998a, 1998b; Martinelli and others, 1998; Hall and others, 2009). Studies that use telemetry assume that the processes by which the animals are captured, handled, and tagged, as well as the act of carrying the transmitter, will have minimal effect on their behavior and performance. This assumption, commonly stated as a lack of transmitter effects, must be valid if telemetry studies are to describe accurately the movements and behavior of an entire population of interest, rather than the subset of that population that carries transmitters. This document describes a standard operating procedure (SOP) for surgical implantation of radio or acoustic transmitters in juvenile salmonids. The procedures were developed from a broad base of published information, laboratory experiments, and practical experience in tagging thousands of fish for numerous studies of juvenile salmon movements near Columbia River and Snake River hydroelectric dams. Staff from the Western Fisheries Research Center's Columbia River Research Laboratory (CRRL) frequently have used telemetry studies to evaluate new structures or operations at hydroelectric dams in the Columbia River Basin, and these evaluations typically require large numbers of tagged fish. For example, a study conducted at the dams on the Columbia River and funded by the U.S. Army Corps of Engineers required tagging and monitoring of 40,000 juvenile salmon during a 3-month migration period (Counihan and others, 2006a, 2006b; Perry and others, 2006). To meet the demands of such a large study, the authors and CRRL staff refined the SOP to increase efficiency in the tagging process while maintaining high standards of fish care. The SOP has been used in laboratory and field settings for more than 15 years, and consistently has produced low mortality rates (<1 percent) and transmitter loss rates (<0.01 percent) in the 24-36 hours after tagging. In addition to describing the detailed surgical procedures required for transmitter implantation, this document provides guidance on fish collection, handling and holding, and the release of tagged fish. Although often overlooked, or at least underemphasized, these processes can have a large impact on the outcome of the tagging procedure. Stress associated with the individual steps in handling and tagging can be cumulative and lethal (Maule and others, 1988; Wedemeyer and others, 1990; Portz and others, 2006), so the goal is to provide the best possible fish care at every step in order to manage the overall effect on study fish.
Developing consistent Landsat data sets for large area applications: the MRLC 2001 protocol
One of the major efforts in large area land cover mapping over the last two decades was the completion of two U.S. National Land Cover Data sets (NLCD), developed with nominal 1992 and 2001 Landsat imagery under the auspices of the MultiResolution Land Characteristics (MRLC) Consortium. Following the successful generation of NLCD 1992, a second generation MRLC initiative was launched with two primary goals: (1) to develop a consistent Landsat imagery data set for the U.S. and (2) to develop a second generation National Land Cover Database (NLCD 2001). One of the key enhancements was the formulation of an image preprocessing protocol and implementation of a consistent image processing method. The core data set of the NLCD 2001 database consists of Landsat 7 Enhanced Thematic Mapper Plus (ETM+) images. This letter details the procedures for processing the original ETM+ images and more recent scenes added to the database. NLCD 2001 products include Anderson Level II land cover classes, percent tree canopy, and percent urban imperviousness at 30-m resolution derived from Landsat imagery. The products are freely available for download to the general public from the MRLC Consortium Web site at http://www.mrlc.gov.
Outer Continental Shelf Oil and Gas Information Program: Atlantic index (December 1980 - June 1981)
In an effort to develop the oil and gas resources of the Outer Continental Shelf (OCS), the United States currently conducts a leasing program for these resources. The Secretary of the Department of the Interior has been designated by the Outer Continental Shelf Lands Act of 1953 (43 U.S.C. 1331-1343), as amended by the Outer Continental Shelf Lands Acts of 1978, to manage and regulate many of the activities that relate to the leasing, exploration, development, and production of the OCS mineral resources. Many of the Secretary's responsibilities have been delegated to the Bureau of Land Management (BLM) and the U.S. Geological Survey (USGS). Under OCS Lands Act an Outer Continental Shelf Oil and Gas Information Program was created and is managed by the BLM and the USGS. Authorities and operating procedures are detailed in the Code of Federal Regulations at 30 CFR 252 and 43 CFR 3300. Under this program regional indexes are prepared by the U.S. Geological Survey in conjunction with the Bureau of Land Management, and they list all relevant, actual, or proposed programs, plans, reports, environmental impact statements, and other lease sale information. The indexes are provided on a regular basis to affected States and, upon request, to local governments.
Reflections on writing hydrologic reports
Reporting of scientific work should be characterized by a logical argument that is developed through presentation of the problem, tabulation and display of data pertinent to the problem , and testing and interpretation of the data to prove hypotheses that address the problem. Organization of the report is vital to developing this logical argument: it provides structure, continuity, logic, and emphasis to the presentation. Each part of the report serves a specific function and each is linked by a connecting logic, the logical argument of the report. Each scientific report normally has a title, table of contents, abstract, introduction, body (of the report), and summary and/or conclusions. Organization of sections within the body of the report is exactly parallel to overall organization; subjects presented in the section title are developed by logical subdivisions and pertinent discussion. The summary and/or conclusions section culminates the logical argument of the report by drawing together and quantitatively reiterating the principal conclusions developed in the discussion. Supplemental information on report content, background of the study, additional data or details on procedures, and other information of interest to the reader is presented in the foreward or preface, list of illustrations or tables, glossaries, and appendixes. (Lantz-PTT)