USGS Science⌕ Search

SEARCH · USGS Science

Results for “Community Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 recordsLinked to original sources
USGS2015

Community ecology in a changing environment: Perspectives from the Quaternary

Community ecology and paleoecology are both concerned with the composition and structure of biotic assemblages but are largely disconnected. Community ecology focuses on existing species assemblages and recently has begun to integrate history (phylogeny and continental or intercontinental dispersal) to constrain community processes. This division has left a “missing middle”: Ecological and environmental processes occurring on timescales from decades to millennia are not yet fully incorporated into community ecology. Quaternary paleoecology has a wealth of data documenting ecological dynamics at these timescales, and both fields can benefit from greater interaction and articulation. We discuss ecological insights revealed by Quaternary terrestrial records, suggest foundations for bridging between the disciplines, and identify topics where the disciplines can engage to mutual benefit.

PNAS↗
USGS2008

Ecological community integration increases with added trophic complexity

The existence of functional biological organization at the level of multi-species communities has long been contested in ecology and evolutionary biology. I found that adding a trophic level to simulated ecological communities enhanced their ability to compete at the community level, increasing the likelihood of one community forcing all or most species in a second community to extinction. Community-level identity emerged within systems of interacting ecological networks, while competitive ability at the community level was enhanced by intense within-community selection pressure. These results suggest a reassessment of the nature of biological organization above the level of species, indicating that the drive toward biological integration, so prominent throughout the history of life, might extend to multi-species communities.

Ecological Complexity↗
USGS2017

Southern Great Plains Rapid Ecoregional assessment—Volume I. Ecological communities

The Southern Great Plains Rapid Ecoregional Assessment was conducted in partnership with the Bureau of Land Management (BLM) and the Great Plains Landscape Conservation Cooperative . The overall goal of the Rapid Ecoregional Assessments (REAs) is to compile and synthesize regional datasets to facilitate evaluation of the cumulative effects of change agents on priority ecological communities and species. In particular, the REAs identify and map the distribution of communities and wildlife habitats at broad spatial extents and provide assessments of ecological conditions. The REAs also identify where and to what degree ecological resources are currently at risk from change agents, such as development, fire, invasive species, and climate change. The REAs can help managers identify and prioritize potential areas for conservation or restoration, assess cumulative effects as required by the National Environmental Policy Act, and inform landscape-level planning and management decisions for multiple uses of public lands. Management questions form the basis for the REA framework and were developed in conjunction with the BLM and other stakeholders. Conservation elements are communities and species that are of regional management concern. Core management questions relate to the key ecological attributes and change agents associated with each conservation element. Integrated management questions synthesize the results of the primary core management questions into overall landscape-level ranks for each conservation element. The ecological communities evaluated as conservation elements are shortgrass, mixed-grass, and sand prairies; all grasslands; riparian and nonplaya wetlands; playa wetlands and saline lakes; and prairie streams and rivers. Species and species assemblages evaluated are the freshwater mussel assemblage, Arkansas River shiner ( Notropis girardi ), ferruginous hawk ( Buteo regalis ), lesser prairie chicken ( Tympanuchus pallidicinctus ), snowy plover ( Charadrius nivosus ), mountain plover ( Charadrius montanus ), long-billed curlew ( Numenius americanus ), interior least tern ( Sternula antillarum athalassos ), burrowing owl ( Athene cunicularia hypugaea ), black-tailed prairie dog ( Cynomys ludovicianus ), bat assemblage, swift fox ( Vulpes velox ), and mule deer ( Odocoileus hemionus ). The Southern Great Plains REA is summarized in a series of three reports and associated datasets. The pre-assessment report (available online at https://pubs.usgs.gov/of/2015/1003/ ) summarizes the process used by the REA stakeholders to select management questions, conservation elements, and change agents. It also provides background information for each conservation element. Volume I of the Southern Great Plains REA report (this volume) addresses the ecological communities. Volume II will address the species and species assemblages. All source and derived datasets used to produce the maps and graphs for REAs are available online at the BLM Landscape Approach Data Portal ( https://landscape.blm.gov/geoportal/catalog/REAs/REAs.page ).

Colorado, Kansas, Nebraska, New Mexico, Oklahoma, ↗
USGS2021

Pedigree accumulation analysis: Combining methods from community ecology and population genetics for breeding adult estimation

Estimates of the number of successfully breeding adults ( N S ) in a population can predict levels of recruitment. However, assessments of N S are often difficult to obtain because encounters with adults are limited due to life-history characteristics, low abundance or other constraints associated with access to critical habitats. Alternatively, efforts to sample individuals at earlier ontogenetic stages can be more tractable, resulting in more comprehensive samples. To estimate N S , we describe, evaluate and apply two nonparametric species richness estimators to information associated with genetic pedigree reconstruction. Simulations compared bias and precision associated with Chao and Jackknife methods when estimating N S . We also evaluated N S estimation sensitivity to two sources of variation associated with species reproductive ecology (variance in reproductive success and sex ratio skew) and genetic pedigree assignment error. Finally, the application of our novel method was demonstrated in two different species and systems (Chinook Salmon in Oregon, USA and Lake Sturgeon in Michigan, USA). We found unbiased N S estimates were generated across a broad range of offspring sample sizes using the Chao method. Empirical results corroborated simulation-based expectations and highlighted applications where parents and offspring are sampled, and when only offspring are sampled. When offspring sample sizes are adequate and pedigree reconstruction errors are low, the combination of established methods from community ecology and genetic pedigree reconstruction provides an accurate alternative method to estimate N S that can facilitate population assessments.

Methods in Ecology and Evolution↗
USGS2019

Phenology and species diversity in a Lake Huron ichthyoplankton community: Ecological implications of invasive species dominance

Ichthyoplankton communities are dynamic and vary spatiotemporally based on factors such as wind, water currents, and phenology. Nonetheless, ichthyoplankton are an indicator of spawning success in fish populations and examining their community diversity and composition can serve to provide information on ecosystem integrity. Although some ichthyoplankton species may be transient, understanding their distribution in space and time provides information on species composition, abundance, and habitat use during critical early life stages. We sampled the spring-summer ichthyoplankton community during 2008 and 2009 in northern Lake Huron to determine species succession, abundance, and species diversity along physical and environmental gradients. Seasonal succession of species was similar during both years, indicating well-defined patterns in spawning by local populations. Invasive alewife, rainbow smelt, and round goby were the dominant species during both years, with native stickleback species also abundant. Shannon Entropy (H’) increased with increasing water temperature until late summer when H’ declined. H’ decreased with increasing bottom depth and distance to tributary mouth indicating the important ecological role of these habitat features during early life stages. Although ichthyoplankton diversity was comparable to or higher than that reported for other areas of the Great Lakes, the prominence of invasive species in our study is reflective of the degraded state of the Lake Huron fish community, despite large reductions in invasive planktivorous fish since 2004. Continued monitoring of ichthyoplankton communities will be important for measuring the impacts of species invasions or other ecosystem stressors on fish community structure in the Great Lakes.

Lake Huron↗
USGS2017

Building translational ecology communities of practice: insights from the field

Translational ecology (TE) prioritizes the understanding of social systems and decision contexts in order to address complex natural resource management issues. Although many practitioners in applied fields employ translational tactics, the body of literature addressing such approaches is limited. We present several case studies illustrating the principles of TE and the diversity of its applications. We anticipate that these examples will help others develop scientific products that decision makers can use “off the shelf” when solving critical ecological and social challenges. Our collective experience suggests that research of such immediate utility is rare. Long‐term commitment to working directly with partners to develop and reach shared goals is central to successful translation. The examples discussed here highlight the benefits of translational processes, including actionable scientific results, more informed policy making, increased investment in science‐driven solutions, and inspiration for partnerships. We aim to facilitate future TE‐based projects and build momentum for growing this community of practice.

Frontiers in Ecology and the Environment↗
USGS2005

Phytoplankton community ecology: Principles applied in San Francisco Bay

In his seminal 1961 paper 'The paradox of the plankton' Am Nat 95:137-147, G. E. Hutchinson asked why many species of phytoplankton can coexist while competing for a small number of limiting resources in an unstructured habitat. Hutchinson anticipated the resolution of his paradox, recognizing that communities are organized by processes beyond resource competition including species interactions, habitat variability and dispersal. Since 1961 we have made fundamental discoveries that have revolutionized our conceptual understanding of pelagic ecology, including (1) habitat heterogeneity at all scales relevant to plankton population dynamics, (2) community shifts in response to global climate cycles, (3) fast and selective predation as a powerful top-down force to shape phytoplankton communities, (4) turbulent mixing as a physical process that selects species on the basis of their size and form, (5) mixotrophy that allows some algal species to tap organic nutrient pools and function at multiple trophic levels, (6) taxon-specific life cycles including alternating vegetative and resting stages, and (7) the pelagic as an open system where communities are continually reshaped by species immigration. Here we synthesize these discoveries to show how they validate and amplify Hutchinson's hypothesis that phytoplankton communities are assembled by many processes. Our synthesis is built around observations of phytoplankton species composition from a decade of study in San Francisco Bay, used as a case study to illustrate the contemporary principles of phytoplankton community ecology. We apply these principles to address 2 central questions: (1) What processes assemble phytoplankton communities? (2) How does phytoplankton community composition influence ecosystem functions such as production in pelagic and benthic food webs?

California↗
USGS2024

Biogeochemical and community ecology responses to the wetting of non-perennial streams

Transitions between dry and wet hydrologic states are the defining characteristic of non-perennial rivers and streams, which constitute the majority of the global river network. Although past work has focused on stream drying characteristics, there has been less focus on how hydrology, ecology and biogeochemistry respond and interact during stream wetting. Wetting mechanisms are highly variable and can range from dramatic floods and debris flows to gradual saturation by upwelling groundwater. This variation in wetting affects ecological and biogeochemical functions, including nutrient processing, sediment transport and the assembly of biotic communities. Here we synthesize evidence describing the hydrological mechanisms underpinning different types of wetting regimes, the associated biogeochemical and organismal responses, and the potential scientific and management implications for downstream ecosystems. This combined multidisciplinary understanding of wetting dynamics in non-perennial streams will be key to predicting and managing for the effects of climate change on non-perennial ecosystems.

Nature Water↗
USGS2011

The humpbacked species richness-curve: A contingent rule for community ecology

Functional relationships involving species richness may be unimodal, monotonically increasing, monotonically decreasing, bimodal, multimodal, U-shaped, or with no discernable pattern. The unimodal relationships are the most interesting because they suggest dynamic, nonequilibrium community processes. For that reason, they are also contentious. In this paper, we provide a wide-ranging review of the literature on unimodal (humpbacked) species richness-relationships. Though not as widespread as previously thought, unimodal patterns of species richness are often associated with disturbance, predation and herbivory, productivity, spatial heterogeneity, environmental gradients, time, and latitude. These unimodal patterns are contingent on organism and environment; we examine unimodal species richness-curves involving plants, invertebrates, vertebrates, plankton, and microbes in marine, lacustrine, and terrestrial habitats. A goal of future research is to understand the contingent patterns and the complex, interacting processes that generate them.

International Journal of Ecology↗
USGS2020

Biofilms provide new insight into pesticide occurrence in streams and links to aquatic ecological communities

Streambed sediment is commonly analyzed to assess occurrence of hydrophobic pesticides and risks to aquatic communities. However, stream biofilms also have the potential to accumulate pesticides and may be consumed by aquatic organisms. To better characterize risks to aquatic life, the U.S. Geological Survey Regional Stream Quality Assessment measured 93 current-use and 3 legacy pesticides in bed sediment and biofilm from 54 small streams in California across a range of land-use settings. On average, 4 times as many current-use pesticides were detected in biofilm at a site (median of 2) as in sediment (median of 0.5). Of 31 current-use pesticides detected, 20 were detected more frequently in biofilm than sediment and 10 equally frequently. Pyrethroids as a class were the most potentially toxic to benthic invertebrates, and of the nine pyrethroids detected, seven occurred more frequently in biofilm than sediment. We constructive General Additive Models to investigate relations between pesticides and six metrics of benthic community structure. Pesticides in biofilm improved fit in four of the six models, and pesticides in sediment improved fit in two. The results indicate that sampling of stream biofilms can complement bed-sediment sampling by identifying more current-use pesticides present and better estimating ecological risks.

California↗
USGS1995

Sea otters and kelp forests in Alaska: Generality and variation in a community ecological paradigm

Multiscale patterns of spatial and temporal variation in density and population structure were used to evaluate the generality of a three—trophic—level cascade among sea otters (Enhydra lutris), invertebrate herbivores, and macroalgae in Alaska. The paradigm holds that where sea otters occur herbivores are rare and plants are abundant, whereas when sea otters are absent herbivores are relatively common and plants are rare. Spatial patterns were based on 20 randomly placed quadrats at 153 randomly selected sites distributed among five locations with and four locations without sea otters. Both sea urchin and kelp abundance differed significantly among locations with vs. without sea otters in the Aleutian Islands and southeast Alaska. There was little (Aleutian Islands) or no (southeast Alaska) overlap between sites with and without sea otters, in plots of kelp density against urchin biomass. Despite intersite variation in the abundance of kelps and herbivores, these analyses demonstrate that sea otter predation has a predictable and broadly generalizable influence on the structure of Alaskan kelp forests. The percent cover of algal turf and suspension feeder assemblages also differed significantly (although less dramatically) between locations with and without sea otters. Temporal variation in community structure was assessed over periods of from 3 to 15 yr at sites in the Aleutian Islands and southeast Alaska where sea otters were 1) continuously present, 2) continuously absent, or 3) becoming reestablished because of natural range expansion. Kelp and sea urchin abundance remained largely unchanged at most sites where sea otters were continuously present or absent, the one exception being at Torch Bay (southeast Alaska), where kelp abundance varied significantly through time and urchin abundance varied significantly among sites because of episodic and patchy disturbances. In contrast, kelp and sea urchin abundances changed significantly, and in the expected directions, at sites that were being recolonized by sea otters. Sea urchin biomass declined by 50% in the Aleutian Islands and by nearly 100% in southeast Alaska following the spread of sea otters into previously unoccupied habitats. In response to these different rates and magnitudes of urchin reduction by sea otter predation, increases in kelp abundance were abrupt and highly significant in southeast Alaska but much smaller and slower over similar time periods in the Aleutian Islands. The different kelp colonization rates between southeast Alaska and the Aleutian Islands appear to be caused by large—scale differences in echinoid recruitment coupled with size—selective predation by sea otters for larger urchins. The length of urchin jaws (correlated with test diameter, r 2 = 0.968) in sea otter scats indicates that sea urchins <15—20 mm test diameter are rarely eaten by foraging sea otters. Sea urchin populations in the Aleutian Islands included high densities of small individuals (<20 mm test diameter) at all sites and during all years sampled, whereas in southeast Alaska similarly sized urchins were absent from most populations during most years. Small (<30—35 mm test diameter) tetracycline—marked urchins in the Aleutian Islands grew at a maximum rate of °10 mm/yr; thus the population must have significant recruitment annually, or at least every several years. In contrast, echinoid recruitment in southeast Alaska was more episodic, with many years to perhaps decades separating significant events. Our findings help explain regional differences in recovery rates of kelp forests following recolonization by sea otters.

Alaska↗
USGS2020

Soil water availability shapes species richness in mid-latitude shrub steppe plant communities

Questions Ecological communities are controlled by multiple, interacting abiotic and biotic factors that influence the distribution, abundance, and diversity of species. These processes jointly determine resource availability, resource competition, and ultimately species richness. For many terrestrial ecosystems in dryland climates, soil water availability is the most frequent limiting resource for plant species. We used field sampling coupled with process‐based soil water balance modeling to explore the relative importance of multiple macroclimatic, ecohydrological, and biotic variables on plant species and functional type richness at the landscape scale in dryland plant communities. Location Dryland plant communities dominated by big sagebrush ( Artemisia tridentata ) that span climatic and elevational gradients in Wyoming, USA. Methods We quantified species richness at 1,000 m 2 and used multiple regression to determine whether mean climatic conditions, multiple metrics of soil moisture from a soil water balance model (SOILWAT2), soil physical and chemical properties, and shrub stand structure (biotic) variables were related to species and functional type richness. Results Species richness varied between 16 and 54 across sites. We found that species and functional type richness were related to both macroclimate and ecohydrology, but ecohydrology explained slightly more variation than climate. Biotic variables were always secondary to macroclimate and ecohydrology in our models. Variance partitioning revealed that large portions of variability in species (~54%), forb (~47%), and grass (~40%) richness were explained by ecohydrological variables. Conclusions Our results highlight the importance of the spatial and temporal distribution of soil water for dryland plant species richness and suggest that documenting the ways in which climate, vegetation, and soil properties interact to determine soil water availability is critical for understanding biodiversity patterns in dryland plant communities. This work has relevance for other mid‐latitude, shrub‐dominated dryland plant communities where soil water availability strongly influences ecosystem structure and function.

Wyoming↗
USGS2010

Trait-based approaches in the analysis of stream fish communities

Species traits are used to study the functional organization of fish communities for a range of reasons, from simply reducing data dimensionality to providing mechanistic explanations for observed variation in communities. Ecological and life history traits have been used to understand the basic ecology of fishes and predict (1) species and community responses to habitat and climate alteration, and (2) species extinction, species invasion, and community homogenization. Many approaches in this arena have been developed during the past three decades, but they often have not been integrated with related ecological concepts or subdisciplines, which has led to confusion in terminology. We review 102 studies of species traits and then summarize patterns in traits being used and questions being addressed with trait-based approaches. Overall, studies of fish–habitat relationships that apply habitat templates and hierarchical filters dominate our sample; the most frequently used traits are related to feeding. We define and show the relationships among key terms such as fundamental and realized niches; functional traits, performance, and fitness; tactic, trait-state, syndromes, and strategies; and guilds and functional groups. We propose accelerating research to (1) quantify trait plasticity, (2) identify traits useful for testing ecological hypotheses, (3) model habitat and biotic interactions in communities while explicitly accounting for phylogenetic relationships, (4) explore how traits control community assembly, and (5) document the importance of traits in fish– community responses to anthropogenic change and in delivering ecosystem services. Further synthesis of these topics is still needed to develop concepts, models, and principles that can unify the disparate approaches taken in trait-based analysis of fish communities, link fish community ecology to general community ecology, and inform sustainable management of ecosystems.

Conference Paper↗
USGS2025

Assessing the Feasibility of Reintroducing San Francisco Gartersnakes ( Thamnophis sirtalis tetrataenia ) to La Honda Creek Open Space Preserve, San Mateo County, California

Reintroductions are used worldwide to increase the viability of species and restore native ecological communities. The success of reintroductions is usually judged by the establishment of self-sustaining populations, restoration of naturally occurring ecological communities, and the species resuming its ecological function. Recovery for the endangered San Francisco gartersnake (SFGS, Thamnophis sirtalis tetrataenia ), a subspecies with a small range in San Mateo and Santa Cruz counties in California, will likely require reintroduction and establishment of new populations within its historical range. La Honda Creek Open Space Preserve (LHC), managed by the Midpeninsula Regional Open Space District (MROSD), is one potential site for the reintroduction of SFGS. The La Honda Creek Open Space Preserve is a preserve managed for wildlife, recreation, grazing, and agriculture located near extant populations of SFGS inhabiting other open space preserves managed by MROSD (Cloverdale Ranch Open Space Preserve [CR]; Russian Ridge Open Space Preserve [RR]). We compared the habitat and prey communities at LHC to nearby open space preserves that support extant SFGS populations. Based on pond surveys done annually since 2008, the occurrence of California red-legged frogs ( Rana draytonii ), Sierran chorus frogs ( Pseudacris sierra ), and Pacific newts ( Taricha spp.) at LHC indicates a similar prey community at this preserve to those at CR and RR. Likewise, the landscape at LHC is a similar mosaic of wetlands, open grassland, shrub-dominated scrub, and coast redwood ( Sequoia sempervirens ) and Douglas fir ( Pseudotsuga menziesii ) forest that meets the habitat requirements for the life history of SFGS at CR and RR. One difference between LHC and preserves with SFGS populations is the lack of vegetative cover immediately adjacent to some wetlands at LHC, which could affect the ability of SFGS to disperse from wetlands and find terrestrial refuges. To evaluate alternative reintroduction strategies, we simulated population viability for a fixed number of SFGS released at LHC into one to six subpopulations (where each wetland represents a subpopulation) over a period from 5 to 20 years. Population simulations indicated that the highest average viability (in other words, the lowest probability of quasi-extinction) occurred when all SFGS were released into a single subpopulation and releases continued annually for 15 to 20 years. Our results indicate that LHC is a good candidate for reintroducing SFGS with suitable habitat, climate, and prey for this snake subspecies. Supporting SFGS populations at LHC could require habitat management to provide sufficient vegetative cover in the terrestrial environment near wetlands. Maintaining genetic diversity in the reintroduced population will also be paramount to ensure negative effects of inbreeding and homozygosity do not affect population viability.

California↗
USGS2020

Trait‐based variation in host contribution to pathogen transmission across species and resource supplies

Two key knowledge gaps currently limit the development of more predictive and general models of pathogen transmission: (1) the physiological basis of heterogeneity in host contribution to pathogen transmission (reservoir potential) remains poorly understood, and (2) a general means of integrating the ecological dynamics of host communities has yet to emerge. If the traits responsible for differences in reservoir potential also modulate host community dynamics, these traits could be used to predict pathogen transmission as host communities change. In two greenhouse experiments, across 23 host species and two levels of resource supply, the reservoir potential of plant hosts increased significantly along the Leaf Economic Spectrum, a global axis of plant physiological trait covariation that features prominently in models of plant community ecology. This indicates that the traits of the Leaf Economic Spectrum underlie broad differences in reservoir potential across host species and resource supplies. Therefore, host traits could be used to integrate epidemiological models of pathogen transmission with ecological models of host community change.

Ecology↗