A one-pot procedure for the quantitative conversion of glycosides into acetylated glycosyl fluorides
[No abstract available]
Carbohydrate Research↗
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Plants in alpine environments
Alpine and subalpine plant species are of special interest in ecology and ecophysiology because they represent life at the climate limit and changes in their relative abundances can be a bellwether for climate-change impacts. Perennial life forms dominate alpine plant communities, and their form and function reflect various avoidance, tolerance, or resistance strategies to interactions of cold temperature, radiation, wind, and desiccation stresses that prevail in the short growing seasons common (but not ubiquitous) in alpine areas. Plant microclimate is typically uncoupled from the harsh climate of the alpine, often leading to substantially warmer plant temperatures than air temperatures recorded by weather stations. Low atmospheric pressure is the most pervasive, fundamental, and unifying factor for alpine environments, but the resulting decrease in partial pressure of CO 2 does not significantly limit carbon gain by alpine plants. Factors such as tree islands and topographic features create strong heterogeneous mosaics of microclimate and snow cover that are reflected in plant community composition. Factors affecting tree establishment and growth and formation of treeline are key to understanding alpine ecology. Carbohydrate and other carbon storage, rapid development in a short growing season, and physiological function at low temperature are prevailing attributes of alpine plants. A major contemporary research theme asks whether chilling at alpine-treeline affects the ability of trees to assimilate the growth resources and particularly carbon needed for growth or whether the growth itself is limited by the alpine environment. Alpine areas tend to be among the best conserved, globally, yet they are increasingly showing response to a range of anthropogenic impacts, such as atmospheric deposition.
Book chapter↗
Spring migration of waterfowl in the Northern Hemisphere: a management and conservation perspective
Spring migration is a key part of the annual cycle for waterfowl populations in the northern hemisphere, due to its temporal proximity to the breeding season and because resources may be limited at one or more staging sites. Research based on field observations during spring lags behind other periods of the year, despite the potential for fitness consequences through diminished survival or cross-seasonal effects of conditions experienced during migration. Consequently, conservation strategies for waterfowl on spring migration are often only refined versions of practices used during autumn and winter. Here we discuss the current state of knowledge of habitat requirements for waterfowl at their spring migratory sites and the intrinsic and extrinsic factors that lead to variability in those requirements. The provision of plant foods has become the main conservation strategy during spring because of the birds’ energy requirements at this time, not only to fuel migration but to facilitate early clutch formation on arrival at the breeding grounds. Although energy sources are important to migrants, there is little evidence on the extent to which the availability of carbohydrate-based food is limiting for many migratory waterfowl populations. Such limitation is relatively unlikely among populations that exploit agricultural grain during migration (e.g. arctic-nesting geese), suggesting that conservation strategies for these populations may be misplaced. In general, however, we found few cases in which an ecological understanding of spring-migrating waterfowl was sufficient to indicate true resource limitation during migration, and still fewer cases where conservation efforts ameliorated these limitations. We propose a framework that aims to address knowledge gaps and apply empirical research results to conservation strategies based on documented limitations and associated fitness impacts on migrating waterfowl. Such a strategy would improve allocation of scarce conservation resources during spring migration and greatly improve ecological understanding of migratory waterfowl and their habitats in the northern hemisphere.
Wildfowl↗
Carbon chemistry of intact versus chronically drained peatlands in the southeastern USA
The Great Dismal Swamp (GDS) is a large temperate swamp in Virginia/North Carolina with peat soils historically resistant to microbial decomposition. However, this peatland has been subject to ~200 years of disturbance during which extensive drainage, fire suppression, and wide-spread logging have increased decomposition and dramatically decreased the distribution of Atlantic white cedar (AWC). The purpose of this study was to determine the impact of long-term drainage and AWC loss on the carbon chemistry of GDS peats. Peat cores were collected from three drained GDS vegetation communities (pocosin, AWC, and red maple-black gum) and compared to cores collected from an intact, undrained AWC peatland at the Alligator River National Wildlife Refuge (AR) in North Carolina, USA. The AR peats had higher lignin content in the deeper peat intervals, and lignin content and % organic carbon were largely invariant with depth compared to the GDS peats. The concentrations of syringyl group phenols were greater in the surface layers of GDS peats, likely reflecting the selective removal of AWC and transition from gymnosperms to angiosperms. Acid to aldehyde ratios for vanillyl and syringyl group phenols indicated that the GDS peats were more decomposed, particularly at depth, and that this occurred under aerobic conditions. Moreover, solid state 13C NMR confirmed a coincident loss of carbohydrates and increase in recalcitrant byproducts of carbohydrate degradation with depth. These data indicate that long-term drainage has accelerated the decomposition of peat at the GDS, reducing the capacity and stability of the carbon sink.
Virginia, North Carolina↗
Phragmites management in high water: Cutting plants under water limits biomass production, carbohydrate storage, and rhizome viability
Invasion of Phragmites australis (common reed) in wetlands throughout North America, and particularly the Laurentian Great Lakes Basin, poses significant ecological problems. The extended period of low Great Lakes water levels from 2000 to 2013 created conditions for large expansions of Phragmites in the Great Lakes coastal zone. The following extended period of high water in the Great Lakes during late 2010’s, culminating in record high lake levels in 2020 allowed managers to take advantage of high water by using a cut-to-drown management strategy (i.e., cutting plants below the water surface to stop the flow of atmospheric gases) to control Phragmites populations. To examine the efficacy of a cut-to-drown control strategy, we conducted a controlled-greenhouse study that tested the effect of submergence and timing of cutting (early or late in growing season) on Phragmites growth and viability post treatment. To evaluate Phragmites growth and viability, we measured belowground biomass, rhizome non-structural carbohydrate content (NSC), and rhizome viability following a cut-to-drown treatment. Applying a cut-to-drown treatment reduced average belowground biomass production up to 99%, limited rhizome NSC content up to 83%, and inhibited rhizome viability, regardless of timing of cutting treatments. These results suggest that under high-water conditions, utilizing a cut-to-drown strategy has potential for being a useful control mechanism for Phragmites . However, further research is needed to determine to what extent these results will lead to sustained reductions in growth and viability under field conditions, where rhizome belowground biomass and storage capacity are much larger.
Wetlands Ecology and Management↗
The nutrition of salmonid fishes. II. Studies on production diets
In 69 production diets fed to hatchery salmonids, there was a wide variation in the ingredients of the diets and in their content of protein, fat, carbohydrate and ash. There was a close correlation between the body composition of hatchery-raised fish and the composition of the diets fed. The data indicated, however, that differences in hatchery management, such as level of feeding, were also important contributing factors in producing the observed body composition of hatchery fish. Wild fish had a markedly different body composition characterized by a much lower level of fat and relatively higher protein and mineral content The effect on survival of differences in body composition between wild and hatchery fish is discussed. There is a clearly defined need for additional research on the nutritional requirements of salmonids, the relationship between body composition and ability to survive, and for quality control in hatchery nutrition.
Journal of Nutrition↗
Cultured fungal associates from the deep-sea coral Lophelia pertusa
The cold-water coral Lophelia pertusa provides important habitat to many deep-sea fishes and invertebrates. Studies of the microbial taxa associated with L. pertusa thus far have focused on bacteria, neglecting the microeukaryotic members. This is the first study to culture fungi from living L. pertusa and to investigate carbon source utilization by the fungal associates. Twenty-seven fungal isolates from seven families, including both filamentous and yeast morphotypes, were cultured from healthy L. pertusa colonies collected from the northern Gulf of Mexico, the West Florida Slope, and the western Atlantic Ocean off the Florida coast. Isolates from different sites were phylogenetically closely related, indicating these genera are widely distributed in association with L. pertusa. Biolog™ Filamentous Fungi microtiter plates were employed to determine the functional capacity of a subset of isolates to grow on varied carbon sources. While four of the isolates exhibited no growth on any provided carbon source, the rest ( n =10) grew on 8.3–66.7% of carbon sources available. Carbohydrates, carboxylic acids, and amino acids were the most commonly metabolized carbon sources, with overlap between the carbon sources used and amino acids found in L. pertusa mucus. This study represents the first attempt to characterize a microeukaryotic group associated with L. pertusa. However, the functional role of fungi within the coral holobiont remains unclear.
Florida↗
Nutritional factors in the biochemical pathology of Corynebacterial kidney disease in the coho salmon (Oncorhynchus kisutch)
The influence of diet ingredient on the morbidity and biochemical pathogenesis of corynebacterial kidney disease was investigated using juvenile coho salmon ( Oncorhynchus kisutch ) fed the Abernathy dry ration made up with either corn gluten or cottonseed meal (isoprotein, isocaloric substitution). Evaluation of incidence of infection, pituitary activation and aspects of carbohydrate metabolism, acid-base balance, renal function, and hematopoietic activity showed that the actual disease incidence was about the same for both diets but the nonspecific stress of infection was more severe in fish fed the corn gluten.Discriminant function calculations combining four physiological parameters gave a probability of 0.86 for successfully diagnosing infected fish on the basis of these blood chemistry tests.
Journal of the Fisheries Research Board of Canada↗
Distributions of uronic acids and O-methyl sugars in sinking and sedimentary particles in two coastal marine environments
Although recent research has indicated that bacteria may contribute an important fraction of biochemical residues in terrestrial and marine environments, it is difficult for geochemists to identify contributions from these ubiquitous and biochemically diverse organisms. Previous studies have suggested uronic acids and O -methyl sugars may be useful indicators of microbial abundance and activity, but have been limited primarily to analyses of a small number of isolated samples. We report here comparative distributions of O -methyl sugars, uronic acids, and aldoses in sediment trap material and sediments from Dabob Bay, WA and nearby Saanich Inlet, BC, where temporal and spatial trends may be used together with well-established patterns in other biochemicals to identify bacterial contributions against the background of other carbohydrate sources. O -methyl sugars and uronic acids were important contributors to the overall flux and burial of polysaccharide material in Dabob Bay and Saanich Inlet, composing ≤12 wt% of the total carbohydrate yields from sediment trap and sediment samples. O -methyl sugars accounted for an average of 5% of the carbohydrate yields from sediment trap materials and sediments, but were found rarely and only in low abundance in vascular plant tissues, phytoplankton, and kelp. In contrast, uronic acids were abundant products of sediment trap material and sediments, as well as vascular plant tissues, where in some cases they predominated among all carbohydrates. Uronic acid abundance in sediment trap material averaged 3% and ranged to >6% of total carbohydrate yields. The persistence of total minor sugar yields in water column collections from Dabob Bay throughout the seasonal cycle indicated they had a primary source that was not directly related to plankton bloom cycles nor pulsed inputs of vascular plant remains. Subsurface maxima in total minor sugar yields (and several individual components) within sediment cores from both sites indicate in situ sedimentary sources. Taken together, the observed environmental distributions strongly suggest that the minor sugar abundances in Dabob Bay and Saanich Inlet were controlled by in situ microbial production.
British Columbia, Washington↗
Near infrared spectroscopic examination of charred pine wood, bark, cellulose and lignin: Implications for the quantitative determination of charcoal in soils
The objective of this research was to investigate the effect of charring on near infrared spectra of materials likely to be present in forest fires in order to determine the feasibility of determining charred carbon in soils. Four materials (cellulose, lignin, pine bark and pine wood) and char from these materials created by charring for various durations (1 to 168 h) and at various temperatures (200 to 450??C) were studied. Near infrared spectra and measures of acidity (total acids, carboxylic acids, lactones and phenols as determined by titration) were available for 56 different samples (Not all samples charred at all temperatures/durations). Results showed spectral changes that varied with the material, temperature and duration of charring. Examination of spectra and correlation plots indicated that changes in the constituents of the materials in question, such as loss of OH groups in carbohydrates, rather than direct determination of typical products produced by charring, such as carboxylic acids, lactones and phenols, were the basis for the spectral changes. Finally, while the spectral changes resulting from charring appeared to be relatively unique to each material, PLS calibrations for total acids, carboxylic acids, lactones and phenols were successfully created (with R2 of 0.991, 0.943, 0.931 and 0.944, respectively) indicating that there is a sufficient commonality in the changes to develop calibrations without the need for unique calibrations for each specific set of charring conditions (i.e. material, temperature and time of heating).
Journal of Near Infrared Spectroscopy↗
Histochemical evidence for nitrogen‐transfer Endosymbiosis in non‐photosynthetic cells of leaves and inflorescence bracts of angiosperms
We used light and confocal microscopy to visualize bacteria in leaf and bract cells of more than 30 species in 18 families of seed plants. Through histochemical analysis, we detected hormones (including ethylene and nitric oxide), superoxide, and nitrogenous chemicals (including nitric oxide and nitrate) around bacteria within plant cells. Bacteria were observed in epidermal cells, various filamentous and glandular trichomes, and other non-photosynthetic cells. Most notably, bacteria showing nitrate formation based on histochemical staining were present in glandular trichomes of some dicots (e.g., Humulus lupulus and Cannabis sativa ). Glandular trichome chemistry is hypothesized to function to scavenge oxygen around bacteria and reduce oxidative damage to intracellular bacterial cells. Experiments to assess the differential absorption of isotopic nitrogen into plants suggest the assimilation of nitrogen into actively growing tissues of plants, where bacteria are most active and carbohydrates are more available. The leaf and bract cell endosymbiosis types outlined in this paper have not been previously reported and may be important in facilitating plant growth, development, oxidative stress resistance, and nutrient absorption into plants. It is unknown whether leaf and bract cell endosymbioses are significant in increasing the nitrogen content of plants. From the experiments that we conducted, it is impossible to know whether plant trichomes evolved specifically as organs for nitrogen fixation or if, instead, trichomes are structures in which bacteria easily colonize and where some casual nitrogen transfer may occur between bacteria and plant cells. It is likely that the endosymbioses seen in leaves and bracts are less efficient than those of root nodules of legumes in similar plants. However, the presence of endosymbioses that yield nitrate in plants could confer a reduced need for soil nitrogen and constitute increased nitrogen-use efficiency, even if the actual amount of nitrogen transferred to plant cells is small. More research is needed to evaluate the importance of nitrogen transfer within leaf and bract cells of plants
Biology↗
Multi-year cut-to-drown management limits Phragmites australis growth, belowground resources, and rhizome viability in Great Lakes wetlands
The distribution and abundance of Phragmites in the Great Lakes coastal zone has expanded in part due to its unique ventilation physiology and its ability to take advantage of changes in lake levels over the past several decades. During an extended period of low lake levels in the early 2000s, Phragmites expanded into vast shallow water areas as lake bottoms were exposed. Many of those populations were able to persist when lake levels rose several years later. Here, we investigate a management strategy, known as cut-to-drown, that takes advantage of elevated water levels to effectively control Phragmites by cutting stems underwater, thereby drowning the plant and depleting its stored resources. We tested the impacts of cut timing and frequency on the effectiveness of the cut-to-drown strategy through a multi-year manipulative field study. After two seasons of treatments, we found a 92–99 % reduction in stem density, depending on cut timing. Carbohydrate reserves in rhizomes declined 75–92 %, such that rhizome viability was reduced by 73–100 %, depending on cut timing. We found that cutting continuously (every 2–3 weeks) throughout two growing seasons was the most effective way to implement cut-to-drown but provide evidence that less frequent cutting could produce similar results. Our study provides important evidence to inform best management practices for cut-to-drown. Particularly as lake level fluctuations become more frequent and extreme in the future, cut-to-drown could serve as a useful tool for limiting Phragmites’ ability to persist in high water environments.
Michigan, Ohio↗
Comparison of humic substances isolated from peatbog water by sorption on DEAE-cellulose and amberlite XAD-2
Aquatic humic substances (AHS) were isolated from peatbog water by adsorption (1) on diethylaminoethyl cellulose (DEAE-C) and (2) on Amberlite XAD-2 (XAD) to compare yields of the methods and the composition of the isolated AHS. To provide a detailed comparison, the isolates were fractionated using size-exclusion and hydrophobic-interaction chromatography on Sephadex G-50. The fractions were characterized by ultraviolet-visible, infrared and 13C-nuclear magnetic spectroscopies and analyzed for elemental, functional-group, carbohydrate and amino acid compositions. More AHS adsorbed onto DEAE-C than onto XAD-2 (94 and 74%, respectively). However, only 76% of the AHS adsorbed onto DEAE-C was recovered using 0.1 M NaOH, whereas 98% of the AHS adsorbed onto XAD was released by consecutive elution with 1 M NH4OH (91%) and methanol (7%). Four main fractions of different composition were obtained from each of the alkali-desorbed AHS samples by Sephadex-gel chromatography. General agreement was found in relative amounts, spectroscopic characteristics and composition of corresponding fractions of both isolates except nitrogen content, which was significantly higher in AHS isolated with XAD, apparently due to the reaction of AHS with NH4OH used for the desorption from the resin.Aquatic humic substances (AHS) were isolated from peatbog water by adsorption (1) on diethylaminoethyl cellulose (DEAE-C) and (2) on Amberlite XAD-2 (XAD) to compare yields of the methods and the composition of the isolated AHS. To provide a detailed comparison, the isolates were fractionated using size-exclusion and hydrophobic-interaction chromatography on Sephadex G-50. The fractions were characterized by ultraviolet-visible, infrared and 13C-nuclear magnetic spectroscopies and analyzed for elemental, functional-group, carbohydrate and amino acid compositions. More AHS adsorbed onto DEAE-C than onto XAD-2 (94 and 74%, respectively). However, only 76% of the AHS adsorbed onto DEAE-C was recovered using 0.1 M NaOH, whereas 98% of the AHS adsorbed onto XAD was released by consecutive elution with 1 M NH4OH (91%) and methanol (7%). Four main fractions of different composition were obtained from each of the alkali-desorbed AHS samples by Sephadex-gel chromatography. General agreement was found in relative amounts, spectroscopic characteristics and composition of corresponding fractions of both isolates except nitrogen content, which was significantly higher in AHS isolated with XAD, apparently due to the reaction of AHS with NH4OH used for the desorption from the resin.
Water Research↗
Sago pondweed (Potamogeton pectinatus L.): A literature review
Sago pondweed ( Potamogeton pectinatus L.) is a submersed macrophyte of nearly cosmopolitan distribution. The plant is of worldwide importance as a waterfowl food but also can be a nuisance in irrigation canals and recreational areas. The plant reproduces by many different means, depending on habitat and environmental stress. Several genetic ecotypes have evolved. Most important as waterfowl food are the turions (tubers), vegetative propagules rich in carbohydrates that are mostly buried in bottom sediments. In temperate wetlands, most turions sprout in spring, making sago behave as an annual. Drupelets (seeds) are the sexual propagules of sago and provide a mechanism for sago to survive periods of drought and excessive water salinity. Drupelets can be washed ashore or carried by birds for long distances. Sago decomposes rapidly at senescence, annually in temperate wetlands. Sago is mostly found in semipermanently or permanently flooded mixosaline lacustrine, palustrine, and riverine wetlands < 2.5 m deep, where fetches are not large or currents are < 1 m/s. Sago seems to prefer stable water levels but can tolerate significant water level fluctuations. Among the Potamogetons, only sago tolerates high salinity, pH, and alkalinity, but it fares poorly among specialist taxa in acidic or nutrient-poor waters. Sago is highly tolerant of eutrophic waters, and it can be the only species of submersed macrophyte present in heavily polluted sites. Sago grows in nearly all bottom substrates. Turbidity is the factor that most frequently limits sago growth. Sago often occurs in monotypic stands but can grow with many other submersed and emergent macrophytes. Dominance by sago in certain wetlands sometimes alternates with dominance by other submersed macrophytes when salinities or other environmental factors change. Sago also can be associated with a large variety of unattached filamentous, planktonic, or epiphytic algae. Increased turbidity caused by planktonic algae often is responsible for lowered sago production. Less common biotic limiting factors are organic pollutants and consumption and uprooting by waterfowl and fish. Sago provides food or shelter for amphibians, reptiles, fish, and mammals. The greatest value of sago in North America is as food for migrant and staging waterfowl, primarily diving ducks and swans. Sago beds also provide habitat for a large complex of invertebrates (an important food source for young waterfowl), but direct consumption of living sago by invertebrates is negligible. Sago has been propagated for many years-indoors, as an experimental organism for work in plant physiology or herbicide testing, and outdoors, for purposes of attracting waterfowl. Much work has also been done developing methods to control excessive sago growth in fishponds and irrigation canals. Future research should concentrate on (1) determining, in a variety of wetland types, the causes of light-limiting turbidity that often suppresses sago growth, (2) understanding the ways in which human activities on and near wetlands affect sago production, and (3) developing reliable and predictable techniques to stimulate sago production for waterfowl by using water level manipulations and other means, in a variety of environmental settings.
Resource Publication↗