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Using the California Waterfowl Tracker to assess proximity of waterfowl to commercial poultry in the Central Valley of California

Migratory waterfowl are the primary reservoir of avian influenza viruses (AIV) which can be spread to commercial poultry. Surveillance efforts that track the location and abundance of wild waterfowl and link those data to inform assessments of risk and sampling for AIV currently do not exist. To assist surveillance and minimize poultry exposure to AIV, here we explored the utility of remotely sensed MODerate Resolution Imaging Spectroradiometer (MODIS) satellite imagery in combination with land-based climate measurements (e.g., temperature and precipitation) to predict waterfowl location and abundance in near real-time in the California Central Valley (CCV), where both wild waterfowl and domestic poultry are densely located. Specifically, remotely collected MODIS and climate data were integrated into a previously developed Boosted Regression Tree (BRT) model to predict and visualize waterfowl distributions across the CCV. Daily model-based predictions are publicly available during the winter as part of the dynamic California Waterfowl Tracker (CWT) web-app hosted on the University of California’s Cooperative Extension webpage. In this study, we analyzed 52 days of model predictions and produced daily spatio-temporal maps of waterfowl concentrations near the 605 commercial poultry farms in the CCV during January and February of 2019. Exposure of each poultry farm to waterfowl during each day was classified as “high”, “medium”, “low”, or “none” depending on the density of waterfowl within 4 km of a farm. Results indicated that farms were at substantially greater risk of “exposure” in January, when CCV waterfowl populations peak, than in February. For example, during January, 33% (199/605) of the farms were exposed ≥ 1 day to “high” waterfowl density versus 19% (115/605) of the farms in February. In addition to demonstrating the overall variability of waterfowl location and density, these data demonstrate how remote sensing can be used to better triage AIV surveillance and biosecurity efforts via the utilization of a functional web-app based tool. The ability to leverage remote sensing is an integral advancement toward improving AIV surveillance in waterfowl in close proximity to commercial poultry. Expansion of these types of remote sensing methods linked to a user-friendly web-tool could be further developed across the continental U.S. The BRT model incorporated into the CWT reflects a first attempt to give an accurate representation of waterfowl distribution and density relative to commercial poultry.

California

Habitat features influencing waterbird use of managed wetlands enrolled in a public-private partnership for land conservation: The California Waterfowl Habitat Program

Draining, water diversion, and development have greatly reduced the availability of freshwater wetland habitat around the world, and many remaining wetlands are on private lands. Public–private partnership programs can be an important means for promoting habitat conservation and management on private lands. We investigated bird use of 117 wetlands enrolled in the California Waterfowl Habitat Program in California's Central Valley, where two-thirds of wetlands are under private ownership and management. Specifically, we quantified the influence of wetland habitat features and surrounding land cover on waterbird density and diversity in late winter and early spring and during the waterfowl breeding season. Dabbling duck and shorebird densities were highest in wetlands that had water depths < 20 cm, and waterbird densities decreased with water depth. Greater amounts of emergent vegetation, especially tall and dense emergent vegetation, had a negative effect on total waterbird density but a positive effect on species richness and secretive marsh bird density. Shorebird and breeding duck densities were lower in wetlands with a large number of trees and other potential perch sites, and waterbird densities decreased with the amount of nearby wetland habitat on the landscape. Overall, we estimated that during late winter and early spring, private properties that were enrolled in the California Waterfowl Habitat Program (8000–8500 ha each year) supported 480,000 birds per day during extreme drought conditions in 2022 and 280,000 birds per day in more normal, non-drought conditions in 2023. Over the 76-day winter and early spring survey period, this amounted to more than 20 million bird use days on wetlands enrolled in the California Waterfowl Habitat Program during late winter and early spring. These results demonstrate the value of public–private wetland conservation partnerships, the influence of wetland habitat features and surrounding land cover on waterbird abundance, and the benefits of habitat features that could be incorporated into management plans and wetland selection criteria for enrollment into public–private conservation programs.

California

Organochlorine contaminants in California waterfowl

Concern has been expressed that the extensive use of organochlorine pesticides in California may be exposing waterfowl to hazardous contaminant levels. The objectives of our study were to: (1) determine concentrations of organochlorines in northern pintails ( Anas acuta ) from five important waterfowl wintering areas in California; (2) compare concentrations of organochlorines in selected species with emphasis on relationships to their diets; and (3) determine the relationship between concentrations of organochlorines in wings and carcasses of pintails. In the 1980-81 hunting season, we obtained wings of pintails, canvasbacks ( Aythya valisineria ), and lesser scaups ( A. affinis ) from the Pacific Flyway survey of waterfowl productivity, and we collected additional pintails and northern shovelers ( Anas clypeata ) in the Sacramento Valley. Concentrations of all compounds in pintail wings were below 1 ppm (wet weight), but residues were higher in wings from pintails shot late in the hunting season than early in the season, suggesting that accumulation of chemicals occurs while ducks are wintering in California. Highest concentrations were found in pintails from the southern regions and lowest in those from the northern regions of the state. DDE was significantly higher in males than in females. Wings of diving ducks were too few to enable statistical comparisons. Carcasses of shovelers contained residues of a wide array of organochlorines and significantly (P < 0.001) higher mean concentrations of DDE (0.68 ppm) than did pintails (0.12 ppm) collected at the same time and place. On a wet-weight basis, concentrations of DDE and DDT in the wings of pintails were about half those in the carcasses. Overall, concentrations of organochlorines were relatively low in all species and probably would have no effect on population survival or reproduction. However, some individuals contained elevated and possibly harmful levels of certain chemicals.

California

Relationship between waterfowl nutrition and condition on agricultural drainwater ponds in the Tulare Basin, California: Waterfowl body composition

We examined carcass composition and proximate food composition of ruddy ducks ( Oxyura jamaicensis ), northern shovelers ( Anas clypeata ), and northern pintails ( Anas acuta ) wintering on agricultural drainwater ponds in California during 1983–84. Lipids varied seasonally in northern shovelers and northern pintails. Protein did not fluctuate except in ruddy ducks whose protein mass increased over winter, suggesting that some protein was catabolized prior to arrival on wintering areas or that a buildup of protein occurred prior to spring migration. Waterfowl diets varied among species and time, but the nutritional composition of the diets was relatively stable. Ruddy ducks and shovelers consumed mostly animal foods rich in protein (53–60%) and low in Nitrogen Free Extract (NFE) (1–7%). Pintail diets contained more NFE (23–38%) and less protein (14–38%) because of greater consumption of plant foods. Nutritional composition of pintail diets varied with lower protein consumption occurring from November through January.

California

Impact of fog on California waterfowl flight activity: Historical and modern insights into effects post-Clean Air Act

Since establishment of the Clean Air Act in the early 1970s, occurrence of the dense ‘Tule Fog’, historically prevalent throughout winter across California’s Central Valley, has substantially reduced. At the same time, waterfowl body masses have generally increased. Flight is metabolically expensive, and fog visually and navigationally impairs birds in flight, likely causing them to remain aloft for longer than usual periods. If less fog results in less flight and reduced energy expenditure, then fewer winter Tule fog events could contribute to increased body masses of California waterfowl since the mid-1980’s. Therefore, we aimed to assess the relationship between waterfowl flight and fog occurrence/density with historic (1991–93) and modern (2015–23) waterfowl tracking data in the Central Valley of California (CCV). Historic tracking data showed that the probability of flight increased with increasing fog density. Birds were significantly more likely to fly in fog than when there was no fog and most likely to fly in heavy fog . Modern data showed similar responses to fog with flight occurring significantly more during dawn fog events. This relationship between improved waterfowl body mass and fewer fog events may provide an opportunity to redirect scarce funding to focus on other population requirements such as improving habitats for nesting, molting and brood rearing that are currently lacking. Unanticipated benefits of the Clean Air Act should stand as a strong recommendation to maintaining this Act into the future.

California

Selenium contamination of the Grasslands, a major California waterfowl area

In a recent study at Kesterson Reservoir in California, selenium was shown to cause mortality and deformities in embryos of aquatic birds. The present study was conducted to determine if selenium or other contaminants in agricultural drainwater used for marsh management were likely to cause similar adverse effects in the nearby Grasslands area. Selenium concentrations were elevated (greater than 15 ppm, dry-weight) in livers of some birds of all species collected from the Grasslands. Mean selenium concentrations in all species sampled in the South Grasslands were significantly higher (P less than 0.05) than those from the 'control site', the Volta Wildlife Area. Mean selenium levels in black-necked stilts (Himantopus mexicanus) from the South Grasslands (35.6 ppm) were similar (P greater than 0.05) to levels in stilts from Kesterson (46.4 ppm), but means for American avocets (Recurvirostra americana) from the South Grasslands (67.3 ppm) were higher (P less than 0.05) than those from Kesterson (28.4 ppm). Bird eggs and fish from the Grasslands also contained elevated levels of selenium. Concentrations of eight heavy metals in fish generally reflected those patterns previously found in water entering the study areas. Of the organochlorines detected in fish, only DDE occurred at concentrations potentially harmful to birds (6.1 and 3.0 ppm, wet weight, at two South Grassland sites). The effect on avian health or reproduction of the other contaminants, singly or in combination, could not be determined. However, selenium levels were apparently sufficiently elevated in 1984 to have caused adverse effects on avian reproduction in the South Grasslands.

California

Selenium levels in biota from irrigation drainwater impoundments in the San Joaquin Valley, California

Waterfowl, fish, invertebrates, and plants were collected from impoundments used for evaporating subsurface irrigation drainwater in Kings and Kern counties, California. Specimens were analyzed for trace elements with emphasis on selenium. Dry weight concentrations of total selenium ranged from 2.5 to 17 μg/g in wigeongrass, Ruppia maritima ; 7.6 to 30 μg/g in water boatmen, Corixidae ; 12 to 40 μ/g in mosquitofish, Gambusia affinis ; 86 to 100 μg/g in eared grebe, Podiceps niqricollis , livers; 14 to 120 μg/g in ruddy duck, Oxyura jamaicensis , livers; and 6.8 to 48 μg/g in northern shoveler, Anas clypeata , livers. Concentrations of dissolved selenium ranged from less than 1 to 37 μg/L during a 12-month period for inflows to the drainwater evaporation ponds.

Lake and Reservoir Management

Potential use of poultry farms by wild waterfowl in California's Central Valley varies across space, times of day, and species: implications for influenza transmission risk

Interactions between wildlife and livestock can lead to cross-species disease transmission, which incurs economic costs and threatens wildlife conservation. Wild waterfowl are natural hosts of avian influenza viruses (AIVs), are often abundant near poultry farms, and have been linked to outbreaks of AIVs in poultry. Interspecific and seasonal variation in waterfowl movement and habitat use means that the risk of disease transmission between wild birds and poultry inevitably varies across species, space, and time. Here, we used GPS telemetry data from 10 waterfowl species in and near California's Central Valley, a region where both wild waterfowl and domestic poultry are abundant, to study selection of poultry farms by waterfowl across diel, seasonal, and annual cycles. We found that waterfowl selected for wetlands, open water, protected areas, and croplands, which meant that they generally avoided habitats that were likely to be used for poultry farming. These selection patterns were linked to species' ecology and diel behavioral patterns, such that avoidance of poultry habitats was stronger for local or partial migrants than for long-distance migrants, and stronger during daytime than at night. We then combined these habitat selection results with data on poultry farm locations to map risk of waterfowl–poultry contact across the Central Valley. Average selection strength at poultry farms was low, suggesting that current placement of poultry farms is generally effective for limiting risk of contact with wild birds. When we combined these habitat selection results with data on species' abundances and AIV infection prevalence, we found dramatic variation in potential AIV transmission risk among species. These results could be used to prioritize surveillance and biosecurity efforts for regions and times of relatively high risk. More generally, these results highlight that fine-scale movement data can help identify interspecific, seasonal, and diel patterns in animal behaviors that affect wildlife and poultry health.

California

Movement behavior, habitat selection, and functional responses to habitat availability among four species of wintering waterfowl in California

Habitat selection analyses provide a window into the perceived value of habitats by animals and how those perceptions compare with other animals, change across time, or change in relation to availability (termed functional responses). Habitat selection analysis and functional responses can be used to develop strategies to avoid habitat limitations, guide habitat management, and set attainable conservation goals. GPS relocations of marked animals are the principal data used in habitat selection analysis. The accuracy and frequency with which tracking devices collect data are increasing and may result in non-stationary point processes that result from latent behaviors previously unidentifiable in sparse data.

California

Management of midges and other invertebrates for waterfowl wintering in California

A review of recent waterfowl food habit studies showed that invertebrates are of major dietary importance to ducks wintering in California. However current wetland practices are directed at production of plant foods and seldom consider the propagation of invertebrates. We suggest that invertebrate repopulation of seasonally flooded marshes will occur more rapidly if an inoculum of invertebrates is provided via small ponds flooded several weeks before general marsh flooding in fall. Managers will require considerably more information before management of aquatic invertebrates can be fully developed.

California Fish and Game

Archiving California’s historical duck nesting data

The U.S. Geological Survey (USGS), in partnership with the California Waterfowl Association (CWA) and other organizations, have compiled large datasets on the nesting ecology and management of dabbling ducks and associated upland nesting birds (Northern Harriers [ Circus cyaneus ], Short-eared Owls [ Asio flammeus ], Ring-necked Pheasants [ Phasianus colchicus ], and American Bitterns [ Botaurus lentiginosus ]) throughout California on Federal Refuges, State Wildlife Areas, and private lands, some participating in State and Federal habitat programs. These datasets encompass several long-term monitoring programs at multiple sites throughout California, and include data from more than 26,000 nests and span nearly 30 years. These historical datasets represent some of the longest term datasets on nesting ducks in North America, if not the world. They are extremely valuable for ongoing waterfowl management and habitat conservation efforts in California, as well as throughout the world. However, without organization and electronic access, these data are an untapped resource and are not being used to the full extent possible. Prior to this project, these datasets were scattered among various agencies and organizations, and original paper nest cards were being stored in cardboard boxes in attics and storage containers that were not suitable for long-term archival storage. In addition, most of these data had not been entered into a computerized database and thus were at high risk for permanent data loss. To protect this irreplaceable dataset, we submitted a series of proposals to obtain funds to complete this data archival project over the past 5 years. The Central Valley Joint Venture, USGS Data Rescue Program, and USGS Ecosystems Mission Area funded this data archival project. In addition, we leveraged other USGS projects on nesting shorebirds, songbirds, and seabirds to use further resources to more fully develop the nest database structure for use on nesting waterfowl. Specifically, this large dataset on ducks was archived by USGS, but the dataset is owned and managed by a consortium of organizations. Therefore, any access and use of this data must occur through the principal investigators, who contributed data and resources to this archival project, as detailed in section, &ldquo;Data Availability.&rdquo; With the conclusion of this project, most duck nest data have been entered, but all nest-captured hen data and other breeding waterfowl data that were outside the scope of this project have still not been entered and electronically archived. Maintaining an up-to-date archive will require additional resources to archive and enter the new duck nest data each year in an iterative process. Further, data proofing should be conducted whenever possible, and also should be considered an iterative process as there was sometimes missing data that could not be filled in without more direct knowledge of specific projects. Despite these disclaimers, this duck data archive represents a massive and useful dataset to inform future research and management questions.

California

Wetland availability and salinity concentrations for breeding waterfowl in Suisun Marsh, California

Availability of wetlands with low salinities during the breeding season can influence waterfowl reproductive success and population recruitment. Salinities as low as 2 ppt (3.6 mScm–1) can impair duckling growth and influence behavior, with mortality occurring above 9 ppt (14.8 mScm–1). We used satellite imagery to quantify the amount of available water, and sampled surface water salinity at Grizzly Island, in the brackish Suisun Marsh, at three time-periods during waterfowl breeding (April, May, July) over 4 years (2016–2019). More water was available and salinity was lower during wetter years (2017, 2019) than during drier years (2016, 2018), and the amount of water in wetlands decreased 73%–86% from April to July. Across all time-periods and years, the majority (64%–100%) of wetland habitat area had salinities above what has been shown to negatively affect ducklings (> 2 ppt), and up to 42% of wetland area had salinities associated with duckling mortality (> 9 ppt). During peak duckling production in May, 81%–95% of available water had salinity above 2 ppt, and 5%–21% was above 9 ppt. In May of the driest year (2016), only 0.5 km2 of low-salinity water (< 2 ppt) was available to ducklings in the study area, compared to 2.6 km2 in May of the wettest year (2017). Private duck clubs own the majority of wetland habitat at Grizzly Island and consistently had a greater percentage of land flooded during summer than did publicly owned wetlands, but private wetlands generally had higher salinities than public wetlands, likely because they draw from higher-salinity water sources. By July, few wetlands remained flooded, and most had salinities high enough to impair duckling growth and survival. Local waterfowl populations would benefit from management practices that provide fresher water during peak duckling production in May and retain more water through July.

California

Changes in the status of harvested rice fields in the Sacramento Valley, California: Implications for wintering waterfowl.

Harvested rice fields provide critical foraging habitat for wintering waterfowl in North America, but their value depends upon post-harvest treatments. We visited harvested ricefields in the Sacramento Valley, California, during the winters of 2007 and 2008 (recent period) and recorded their observed status as harvested (standing or mechanically modified stubble), burned, plowed, or flooded. We compared these data with those from identical studies conducted during the 1980s (early period). We documented substantial changes in field status between periods. First, the area of flooded rice increased 4-5-fold, from about 15% to >40% of fields, because of a 3-4-fold increase in the percentage of fields flooded coupled with a 37-41% increase in the area of rice produced. Concurrently, the area of plowed fields increased from <22% to >35% of fields, burned fields declined from about 40% to 1%, and fields categorized as harvested declined from 22-54% to <15%. The increased flooding has likely increased access to food resources for wintering waterfowl, but this benefit may not be available to some goose species, and may be at least partially countered by the increase of plowed fields, especially those left dry, and the decrease of fields left as harvested.We encourage waterfowl managers to implement a rice field status survey in the Sacramento Valley and other North American rice growing regions as appropriate to support long-term monitoring programs and wetland habitat conservation planning for wintering waterfowl.

California

Host correlates of avian influenza virus infection in wild waterfowl of the Sacramento Valley, California

Avian influenza viruses (AIVs) are distributed globally in members of the family Anatidae (waterfowl), and significant disease may occur when these viruses infect commercial poultry or humans. Early detection of AIV through surveillance of wild waterfowl is one measure to prevent future disease outbreaks. Surveillance efforts that are designed to account for host and environmental determinants of susceptibility to infection are likely to be most effective. However, these determinants have not been clearly delineated and may vary with location. Because some regions are at greater risk for AIV outbreaks, the factors that contribute to AIV infection of waterfowl in these areas are of interest. We investigated the prevalence of AIVs in hunter-killed waterfowl at wintering sites in California's Central Valley. Overall, AIV prevalence was 10.5% and, after controlling for age and sex, was greatest in northern shovelers ( Spatula clypeata ) and lowest in wood ducks ( Aix sponsa ). Overall, AIV prevalence was higher in females than in males, but this trend was driven by one sampling year and one waterfowl species (green-winged teal, Anas crecca ). AIV prevalence in waterfowl was lower in samples collected from brackish wetlands compared with those collected from freshwater wetlands, suggesting that wetland type or other environmental factors contribute to AIV prevalence. This study adds to our understanding of the ecology of AIV infection in waterfowl and may assist in developing more efficient, targeted surveillance efforts for the detection of potentially harmful viruses circulating in North American waterfowl.

California

Waste rice seed in conventional and stripper-head harvested fields in California: Implications for wintering waterfowl

Waste rice seed is an important food for wintering waterfowl and current estimates of its availability are needed to determine the carrying capacity of rice fields and guide habitat conservation. We used a line-intercept method to estimate mass-density of rice seed remaining after harvest during 2010 in the Sacramento Valley (SACV) of California and compared results with estimates from previous studies in the SACV and Mississippi Alluvial Valley (MAV). Posterior mean (95% credible interval) estimates of total waste rice seed mass-density for the SACV in 2010 were 388 (336–449) kg/ha in conventionally harvested fields and 245 (198–307) kg/ha in stripper-head harvested fields; the 2010 mass-density is nearly identical to the mid-1980s estimate for conventionally harvested fields but 36% lower than the mid-1990s estimate for stripped fields. About 18% of SACV fields were stripper-head harvested in 2010 vs. 9–15% in the mid-1990s and 0% in the mid-1980s; but due to a 50% increase in planted rice area, total mass of waste rice seed in SACV remaining after harvest in 2010 was 43% greater than in the mid-1980s. However, total mass of seed-eating waterfowl also increased 82%, and the ratio of waste rice seed to seed-eating waterfowl mass was 21% smaller in 2010 than in the mid-1980s. Mass-densities of waste rice remaining after harvest in SACV fields are within the range reported for MAV fields. However, because there is a lag between harvest and waterfowl use in the MAV but not in the SACV, seed loss is greater in the MAV and estimated waste seed mass-density available to wintering waterfowl in SACV fields is about 5–30 times recent MAV estimates. Waste rice seed remains an abundant food source for waterfowl wintering in the SACV, but increased use of stripper-head harvesters would reduce this food. To provide accurate data on carrying capacities of rice fields necessary for conservation planning, trends in planted rice area, harvest method, and postharvest field treatment should be tracked and impacts of postharvest field treatment and other farming practices on waste rice seed availability should be investigated.

California

Selenium in wetlands and waterfowl foods at Kesterson Reservoir, California, 1984

Kesterson Reservoir (Kesterson) received subsurface agricultural drainwater containing high levels of salts and selenium from farmland in the San Joaquin Valley of California. The accumulation of selenium in wetlands and waterfowl foods at Kesterson was investigated during May, August, and December of 1984. High concentrations of selenium were found in water, sediments, terrestrial and aquatic vegetation, and aquatic insects. Mean selenium concentrations in aquatic plants and insects ranged from 1.5 to 170 (μg/g dry weight and were about 11 to 290 times those found at a nearby reference site. Concentrations in some waterfowl food plants and insects at Kesterson were up to 64 times those reported to be a health hazard to birds. Selenium concentrations were more seasonally variable in aquatic plants than in aquatic insects. Few differences in selenium accumulation were found among ponds. Deposition of selenium in plant parts was not uniform; rhizomes contained higher concentrations than seeds and leaves were intermediate. Most biota bioaccumulated maximum selenium concentrations that were 1,000 to nearly 5,000 times the concentration in the water.

California

Potential effects of drought on carrying capacity for wintering waterfowl in the Central Valley of California

We used the bioenergetics model TRUEMET to evaluate potential effects of California's recent drought on food supplies for waterfowl wintering in the Central Valley under a range of habitat and waterfowl population scenarios. In nondrought years in the current Central Valley landscape, food supplies are projected to be adequate for waterfowl from fall through early spring (except late March) even if waterfowl populations reach North American Waterfowl Management Plan goals. However, in all drought scenarios that we evaluated, food supplies were projected to be exhausted for ducks by mid- to late winter and by late winter or early spring for geese. For ducks, these results were strongly related to projected declines in winter-flooded rice fields that provide 45% of all the food energy available to ducks in the Central Valley in nondrought water years. Delayed flooding of some managed wetlands may help alleviate food shortages by providing wetland food resources better timed with waterfowl migration and abundance patterns in the Central Valley, as well as reducing the amount of water needed to manage these habitats. However, future research is needed to evaluate the impacts of delayed flooding on waterfowl hunting, and whether California's existing water delivery system would make delayed flooding feasible. Securing adequate water supplies for waterfowl and other wetland-dependent birds is among the greatest challenges facing resource managers in coming years, especially in the increasingly arid western United States.

Journal of Fish and Wildlife Management