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Distributed geospatial model sharing based on open interoperability standards

Numerous geospatial computational models have been developed based on sound principles and published in journals or presented in conferences. However modelers have made few advances in the development of computable modules that facilitate sharing during model development or utilization. Constraints hampering development of model sharing technology includes limitations on computing, storage, and connectivity; traditional stand-alone and closed network systems cannot fully support sharing and integrating geospatial models. To address this need, we have identified methods for sharing geospatial computational models using Service Oriented Architecture (SOA) techniques and open geospatial standards. The service-oriented model sharing service is accessible using any tools or systems compliant with open geospatial standards, making it possible to utilize vast scientific resources available from around the world to solve highly sophisticated application problems. The methods also allow model services to be empowered by diverse computational devices and technologies, such as portable devices and GRID computing infrastructures. Based on the generic and abstract operations and data structures required for Web Processing Service (WPS) standards, we developed an interactive interface for model sharing to help reduce interoperability problems for model use. Geospatial computational models are shared on model services, where the computational processes provided by models can be accessed through tools and systems compliant with WPS. We developed a platform to help modelers publish individual models in a simplified and efficient way. Finally, we illustrate our technique using wetland hydrological models we developed for the prairie pothole region of North America.

Journal of Remote Sensing↗

Geochemical and hydrologic considerations and the use of enthalpy-chloride diagrams in the prediction of underground conditions in hot-spring systems

Thermal water ascending in a hot-spring system may cool by conduction of heat to the surrounding rock, by boiling, by mixing with cooler water, or by a combination of these processes. Complete or partial chemical reequilibration may occur as a result of this cooling. In spite of these complexities, in many places chemical compositions of hot-spring waters may be used to estimate underground conditions. A plot of enthalpy versus chloride is particularly useful for determining underground temperatures, salinities, and boiling and mixing relations. The utility of this approach is illustrated using hot-spring composition data from Cerro Prieto, Mexico, Orakeikorako, New Zealand, and Yellowstone National Park, Wyoming. ?? 1979.

Journal of Volcanology and Geothermal Research↗

Optimization of salt marsh management at the Bombay Hook National Wildlife Refuge, Delaware, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing salt marsh management decisions at the Bombay Hook National Wildlife Refuge in Delaware. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of eight salt marsh management units within the refuge and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that would be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per salt marsh management unit, that would maximize total management benefits at different cost constraints at the refuge scale. Results indicated that for the objectives and actions considered here, total management benefits would increase consistently up to approximately \$300,000, but that further expenditures would yield diminishing return on investment. Management actions selected within optimal portfolios at total costs less than \$300,000 included hydrologic restoration, recontouring adjacent uplands to facilitate marsh migration, and burning the marsh. The prototype presented here provides a framework for decision making at the Bombay Hook National Wildlife Refuge that can be updated as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge.

Delaware↗

Investigating the role of gas bubble formation and entrapment in contaminated aquifers: Reactive transport modelling

In many natural and contaminated aquifers, geochemical processes result in the production or consumption of dissolved gases. In cases where methanogenesis or denitrification occurs, the production of gases may result in the formation and growth of gas bubbles below the water table. Near the water table, entrapment of atmospheric gases during water table rise may provide a significant source of O 2 to waters otherwise depleted in O 2 . Furthermore, the presence of bubbles will affect the hydraulic conductivity of an aquifer, resulting in changes to the groundwater flow regime. The interactions between physical transport, biogeochemical processes, and gas bubble formation, entrapment and release is complex and requires suitable analysis tools. The objective of the present work is the development of a numerical model capable of quantitatively assessing these processes. The multicomponent reactive transport code MIN3P has been enhanced to simulate bubble growth and contraction due to in-situ gas production or consumption, bubble entrapment due to water table rise and subsequent re-equilibration of the bubble with ambient groundwater, and permeability changes due to trapped gas phase saturation. The resulting formulation allows for the investigation of complex geochemical systems where microbially mediated redox reactions both produce and consume gases as well as affect solution chemistry, alkalinity, and pH. The enhanced model has been used to simulate processes in a petroleum hydrocarbon contaminated aquifer where methanogenesis is an important redox process. The simulations are constrained by data from a crude oil spill site near Bemidji, MN. Our results suggest that permeability reduction in the methanogenic zone due to in-situ formation of gas bubbles, and dissolution of entrapped atmospheric bubbles near the water table, both work to attenuate the dissolved gas plume emanating from the source zone. Furthermore, the simulations demonstrate that under the given conditions more than 50% of all produced CH 4 partitions to the gas phase or is aerobically oxidised near the water table, suggesting that these processes should be accounted for when assessing the rate and extent of methanogenic degradation of hydrocarbons.

Journal of Contaminant Hydrology↗

A zonal evaluation of intrinsic susceptibility in selected principal aquifers of the United States

A method was developed to evaluate intrinsic groundwater susceptibility in 11 study areas across the United States. Calibrated groundwater-flow models and a variable-advection particle-tracking scheme that accounts for uncertainty were used to derive ranges of conservative solute concentration and groundwater age within spatially defined zones from solute loading to the water table. Aquifers were partitioned into six zones; four relative depth zones and two zones to represent pumping wells and surface water. Five years after solute was introduced in simulated recharge and stream leakage, normalized zone concentrations were detected at values above 10 -4 in the shallowest aquifer zone, well zone, and surface-water zone for 10 of the 11 study areas. At the 125-year time scale, 9 out of the 11 study areas exhibited detectable concentrations in all zones and the majority of zones possess concentrations that are substantial relative to the source concentration ( ClC o > 10-1). Thresholds defined by the time representing the earliest 1% of groundwater-transit times were used to identify fast transport pathways within the groundwater. The 1% thresholds occurred in a period of days to years for the shallow zone, days to decades for the well and surface-water zones, and years to millennia for the deeper zones. Thresholds defined by the 99th percentile of groundwater travel times were used to reflect late-time response and ranged considerably between study area (~10 2 to ~10 6 years), which highlights the potential for chemical constituents to persist in groundwater for long periods under a conservative state. The results of this investigation provide an instructive example of the intricate relations between climate and aquifer characteristics and their role on solute transport in groundwater. The proposed method accounts for dynamical processes in the aquifer and complements more traditional assessments of susceptibility using (apparent) mean water age.

Journal of Hydrology↗

Hydrology and cycling of nitrogen and phosphorus in Little Bean Marsh: A remnant riparian wetland along the Missouri River in Platte County, Missouri, 1996–97

The lack of concurrent water-quality and hydrologic data on riparian wetlands in the Midwestern United States has resulted in a lack of knowledge about the water-quality functions that these wetlands provide. Therefore, Little Bean Marsh, a remnant riparian wetland along the Missouri River, was investigated in 1996 and 1997 primarily to determine the magnitude and character of selected water-quality benefits that can be produced in such a wetland and to identify critical processes that can be managed in remnant or restored riparian wetlands for amelioration of water quality. Little Bean Marsh averages 69 hectares in size, has a maximum depth of about 1 meter, and the majority of the marsh is covered by macrophytes. In 1997, 41 percent of the water received by Little Bean Marsh was from direct precipitation, 14 percent was from ground-water seepage, 30 percent from watershed runoff, and 15 percent was backflow from Bean Lake. Although, Little Bean Marsh was both a ground-water recharge and discharge area, discharge to the marsh was three times the recharge to ground water. Ground-water levels closely tracked marsh water levels indicating a strong hydraulic connection between ground water and the marsh. Reduced surface runoff and ground-water availability are stabilizing influences on marsh hydrology and probably contribute to the persistence of emergent vegetation. The rapid hydraulic connection between Little Bean Marsh and ground water indicates that the hydrologic regime of most wetlands along the lower Missouri River is largely a function of the altitude of the marsh bottom relative to the altitude of the water table. More water was lost from the marsh through evapotranspiration (59 percent) than all other pathways combined. This is partially because the transpiration process of abundant macrophytes can greatly contribute to the evapotranspiration above that lost from open water surfaces. Surface outflow accounted for 36 percent and ground-water seepage accounted for only 5 percent of the losses. Large residence times allows the marsh to greatly affect water quality before water escapes as ground-water recharge or surface outflow. The shallowness of Little Bean Marsh and ion exclusion during ice formation caused the highest specific conductances of 1,100 to 1,300 microsiemens per centimeter at 25 degrees Celsius to occur during the winter. This concentration of dissolved solutes under ice can make wetlands more vulnerable to toxic contaminants than deeper surface-water bodies. Dissolved oxygen was less than 5 mg/L (milligrams per liter) for 3 to 4 months and near 0 mg/L for about 1 month in summer. Despite depths of less than 1 meter, temperature stratification persisted more than 3 months during the summers of 1996 and 1997, preventing mixing and contributing to periods of anoxia. Shallow depths and extended periods of anoxia in the marsh limit the ability of some organisms to escape high-temperature stress. Turbidity in Little Bean Marsh usually was low for several reasons: sediment loadings from the largely flood-plain drainage were low, emergent vegetation shade out algae and shield the water from wind, and high concentrations of bivalent cations increase flocculation rates of inorganic suspended material. The high concentrations of bivalent cations was largely because of a substantial amount of ground-water seepage into the marsh. Dissolved organic nitrogen was the dominant nitrogen species in Little Bean Marsh. Denitrification and biotic uptake kept more than 62 percent of nitrate (NO3) and 43 percent of ammonium (NH4) concentrations in marsh samples less than a detection limit of 0.005 mg/L. This contrasts with the Missouri River where inorganic NO3 dominates. Consequently, artificial flood-plain drainage that bypasses riparian wetlands likely deliver substantially more biotically available inorganic nitrogen to receiving waters than surface water that has been routed through a remnant wetland. Average total nitrogen concentrations in Little Bean Marsh were substantially less than those at other Missouri River wetlands, roughly one-half the mean concentrations in the Missouri River, but roughly twice the average nitrogen values in reservoirs of the glaciated plains of Missouri. The largest concentrations of nearly all species of nitrogen and phosphorus and the most intense period of hypereutrophy coincided with a phytoplankton bloom and senescence of River Bulrush (Scirpus fluviatilis) and common cattail (Typha latifolia) in September 1997. The rapid leaching of nitrogen that occurs soon after macrophyte senescence combined with a recent destratification of the marsh probably provided nitrogen to the nitrogen-limited open-water areas and triggered a phytoplankton bloom. Despite the rarity of runoff events, surface runoff from the watershed, combined with atmospheric deposition, contributed more than seven times the 530 kg (kilograms) of nitrogen that escaped Little Bean Marsh in surface outflow during 1997. Atmospheric deposition alone was more than 530 kg. Seepage to ground water contained less than 1.5 percent of the nitrogen leaving the marsh in surface outflow. The slow decay rate of Scirpus fluviatilis and reducing conditions in bottom sediments make burial of organic nitrogen a substantial sink of nitrogen. Denitrification experiments indicate that denitrification rates were limited by NO3 in the water column. Consequently, decomposition and nitrification of NH4 and organic nitrogen are the rate limiting steps of nitrogen removal in Little Bean Marsh. The NO3-limited rates of denitrification also indicate that Little Bean Marsh has a large unused capacity for nitrogen removal. These data indicate that the vast extent of riparian marshes along the Missouri and Mississippi Rivers may have had a substantial role in limiting NO3 loads to the Gulf of Mexico before agricultural development of flood plains. Drainage and removal of riparian marshes may be a major cause of the increased NO3 loads to the Gulf of Mexico. Periods of anoxia had much larger effects on phosphorus release than the other variables. The largest concentrations of phosphorus occurred in late summer and corresponded with senescing macrophytes, periods of anoxia, and a large algal bloom in Little Bean Marsh. Low water levels prevented the escape of phosphorus in surface outflow during these periods of highest phosphorus concentrations. Dry weather in late summer is typical and probably makes the correspondence of low water levels, anoxia, and consequent low phosphorus release a common occurrence in marshes along the Missouri River. Little Bean Marsh retained more than 95 percent of the phosphorus it received. The amount of phosphorus in surface inflows to the marsh were more than one order of magnitude greater than that escaping in surface outflows. The long hydraulic residence time of the marsh and large contributions of iron from ground water (that provide many sorption sites for phosphorus) make the marsh an effective sediment and phosphorus trap.

Missouri↗

One-Water Hydrologic Flow Model (MODFLOW-OWHM)

The One-Water Hydrologic Flow Model (MF-OWHM) is a MODFLOW-based integrated hydrologic flow model (IHM) that is the most complete version, to date, of the MODFLOW family of hydrologic simulators needed for the analysis of a broad range of conjunctive-use issues. Conjunctive use is the combined use of groundwater and surface water. MF-OWHM allows the simulation, analysis, and management of nearly all components of human and natural water movement and use in a physically-based supply-and-demand framework. MF-OWHM is based on the Farm Process for MODFLOW-2005 (MF-FMP2) combined with Local Grid Refinement (LGR) for embedded models to allow use of the Farm Process (FMP) and Streamflow Routing (SFR) within embedded grids. MF-OWHM also includes new features such as the Surface-water Routing Process (SWR), Seawater Intrusion (SWI), and Riparian Evapotrasnpiration (RIP-ET), and new solvers such as Newton-Raphson (NWT) and nonlinear preconditioned conjugate gradient (PCGN). This IHM also includes new connectivities to expand the linkages for deformation-, flow-, and head-dependent flows. Deformation-dependent flows are simulated through the optional linkage to simulated land subsidence with a vertically deforming mesh. Flow-dependent flows now include linkages between the new SWR with SFR and FMP, as well as connectivity with embedded models for SFR and FMP through LGR. Head-dependent flows now include a modified Hydrologic Flow Barrier Package (HFB) that allows optional transient HFB capabilities, and the flow between any two layers that are adjacent along a depositional or erosional boundary or displaced along a fault. MF-OWHM represents a complete operational hydrologic model that fully links the movement and use of groundwater, surface water, and imported water for consumption by irrigated agriculture, but also of water used in urban areas and by natural vegetation. Supply and demand components of water use are analyzed under demand-driven and supply-constrained conditions. From large- to small-scale settings, MF-OWHM has the unique set of capabilities to simulate and analyze historical, present, and future conjunctive-use conditions. MF-OWHM is especially useful for the analysis of agricultural water use where few data are available for pumpage, land use, or agricultural information. The features presented in this IHM include additional linkages with SFR, SWR, Drain-Return (DRT), Multi-Node Wells (MNW1 and MNW2), and Unsaturated-Zone Flow (UZF). Thus, MF-OWHM helps to reduce the loss of water during simulation of the hydrosphere and helps to account for “all of the water everywhere and all of the time.” In addition to groundwater, surface-water, and landscape budgets, MF-OWHM provides more options for observations of land subsidence, hydraulic properties, and evapotranspiration (ET) than previous models. Detailed landscape budgets combined with output of estimates of actual evapotranspiration facilitates linkage to remotely sensed observations as input or as additional observations for parameter estimation or water-use analysis. The features of FMP have been extended to allow for temporally variable water-accounting units (farms) that can be linked to land-use models and the specification of both surface-water and groundwater allotments to facilitate sustainability analysis and connectivity to the Groundwater Management Process (GWM). An example model described in this report demonstrates the application of MF-OWHM with the addition of land subsidence and a vertically deforming mesh, delayed recharge through an unsaturated zone, rejected infiltration in a riparian area, changes in demand caused by deficiency in supply, and changes in multi-aquifer pumpage caused by constraints imposed through the Farm Process and the MNW2 Package, and changes in surface water such as runoff, streamflow, and canal flows through SFR and SWR linkages.

Techniques and Methods↗

Drought-mediated extinction of an arid-land amphibian: Insights from a spatially explicit dynamic occupancy model

Understanding how natural and anthropogenic processes affect population dynamics of species with patchy distributions is critical to predicting their responses to environmental changes. Despite considerable evidence that demographic rates and dispersal patterns vary temporally in response to an array of biotic and abiotic processes, few applications of metapopulation theory have sought to explore factors that explain spatio-temporal variation in extinction or colonization rates. To facilitate exploring these factors, we extended a spatially explicit model of metapopulation dynamics to create a framework that requires only binary presence-absence data, makes few assumptions about the dispersal process, and accounts for imperfect detection. We apply this framework to 22 years of biannual survey data for lowland leopard frogs, Lithobates yavapaiensis, an amphibian that inhabits arid stream systems in the southwestern U.S. and northern Mexico. Our results highlight the importance of accounting for factors that govern temporal variation in transition probabilities, as both extinction and colonization rates varied with hydrologic conditions. Specifically, local extinctions were more frequent during drought periods, particularly at sites without reliable surface water. Colonization rates increased when larval and dispersal periods were wetter than normal, which increased the probability that potential emigrants metamorphosed and reached neighboring sites. Extirpation of frogs from one watershed during a period of severe drought demonstrated the influence of site-level features, as frogs persisted only in areas where most sites held water consistently and where the amount of sediment deposited from high-elevation wildfires was low. Application of our model provided novel insights into how climate-related processes affected the distribution and population dynamics of an arid-land amphibian. The approach we describe has application to a wide array of species that inhabit patchy environments, can improve our understanding of factors that govern metapopulation dynamics, and can inform strategies for conservation of imperiled species.

Arizona↗

Global patterns and environmental controls of perchlorate and nitrate co-occurrence in arid and semi-arid environments

Natural perchlorate (ClO 4 − ) is of increasing interest due to its wide-spread occurrence on Earth and Mars, yet little information exists on the relative abundance of ClO 4 − compared to other major anions, its stability, or long-term variations in production that may impact the observed distributions. Our objectives were to evaluate the occurrence and fate of ClO 4 − in groundwater and soils/caliche in arid and semi-arid environments (southwestern United States, southern Africa, United Arab Emirates, China, Antarctica, and Chile) and the relationship of ClO 4 − to the more well-studied atmospherically deposited anions NO 3 − and Cl − as a means to understand the prevalent processes that affect the accumulation of these species over various time scales. ClO 4 − is globally distributed in soil and groundwater in arid and semi-arid regions on Earth at concentrations ranging from 10 −1 to 10 6 μg/kg. Generally, the ClO 4 − concentration in these regions increases with aridity index, but also depends on the duration of arid conditions. In many arid and semi-arid areas, NO 3 − and ClO 4 − co-occur at molar ratios (NO 3 − /ClO 4 − ) that vary between ∼10 4 and 10 5 . We hypothesize that atmospheric deposition ratios are largely preserved in hyper-arid areas that support little or no biological activity (e.g. plants or bacteria), but can be altered in areas with more active biological processes including N 2 fixation, N mineralization, nitrification, denitrification, and microbial ClO 4 − reduction, as indicated in part by NO 3 − isotope data. In contrast, much larger ranges of Cl − /ClO 4 − and Cl − /NO 3 − ratios indicate Cl − varies independently from both ClO 4 − and NO 3 − . The general lack of correlation between Cl − and ClO 4 − or NO 3 − implies that Cl − is not a good indicator of co-deposition and should be used with care when interpreting oxyanion cycling in arid systems. The Atacama Desert appears to be unique compared to all other terrestrial locations having a NO 3 − /ClO 4 − molar ratio ∼10 3 . The relative enrichment in ClO 4 − compared to Cl − or NO 3 − and unique isotopic composition of Atacama ClO 4 − may reflect either additional in-situ production mechanism(s) or higher relative atmospheric production rates in that specific region or in the geological past. Elevated concentrations of ClO 4 − reported on the surface of Mars, and its enrichment with respect to Cl − and NO 3 − , could reveal important clues regarding the climatic, hydrologic, and potentially biologic evolution of that planet. Given the highly conserved ratio of NO 3 − /ClO 4 − in non-biologically active areas on Earth, it may be possible to use alterations of this ratio as a biomarker on Mars and for interpreting major anion cycles and processes on both Mars and Earth, particularly with respect to the less-conserved NO 3 − pool terrestrially.

Geochimica et Cosmochimica Acta↗

Unravelling the influence of landscape alteration from flow alteration on benthic macroinvertebrate assemblage response in the Delaware River Basin

Quantifying the effects of streamflow alteration on assemblage response is central to understanding the role humans play in shaping aquatic environments. These changes represent a level of complexity that impedes developing quantitative links between flow and ecological response because stream hydrology is strongly intertwined with natural and anthropogenic factors. Better management outcomes require disentangling these linkages. Benthic macroinvertebrate data were combined with GIS-derived natural and anthropogenic basin characteristics to identify factors associated with changes in flow processes and assemblage characteristics. Models linking streamflow metrics and macroinvertebrate response at basin and subregion scales were developed using boosted regression tree (BRT) analysis. Basin-scale BRT analyses revealed that links between macroinvertebrate response and flow metrics were often obscured, whereas more homogeneous subregions were better able to discern relations with flow. Urban land cover was the primary factor accounting for changes in flow characteristics. Elevation, land cover, and high flow frequency were the principal variables driving changes in assemblage structure within subregions. Assemblage metrics and traits were equally useful for building response models and were affected similarly by streamflow alteration. Results indicate that response models should be developed based on upland and coastal subregions. However, when defining subregions, care should be taken to maintain data sufficiency. Developing practical flow-protection standards that support a balance between human water requirements and ecological integrity requires models that reduce uncertainty and identify management-relevant drivers. However, effective management often differs by location and models developed at the subregion level may be more applicable to management and stakeholder interests.

Delaware, New Jersey, New York, Pennsylvania↗

Applications of imaging spectroscopy data: A case study at Summitville, Colorado

From 1985 through 1992, the Summitville open-pit mine produced gold from lowgrade ore using cyanide heap-leach techniques, a method to extract gold whereby the ore pile is sprayed with water containing cyanide, which dissolves the minute gold grains. Environmental problems due to mining activity at Summitville include significant increases in acidic and metal-rich drainage from the site, leakage of cyanide-bearing solutions from the heap-leach pad into an underdrain system, and several surface leaks of cyanide-bearing solutions into the Wightman Fork of the Alamosa River. In general, drainage from the Summitville mine moves downslope into the Wightman Fork, a small tributary of the Alamosa River, which in turn flows east into the Terrace Reservoir before entering the agricultural lands of the San Luis Valley. The increase in the trace-metal burden of the Alamosa River watershed due to the mining activities at Summitville is of concern to farmers and fisherman, as well as Federal and State of Colorado agencies having responsibility for land stewardship. The environment of the Summitville area is a result of 1) its geologic evolution, that culminated in the formation of precious-metal mineral deposits; and 2) previous metal mining activity. Mining accentuates, accelerates, and pertubates natural geochemical processes. The development of underground workings, open pits, mill tailings, and spoil heaps and the extractive processing of ore enhances the likelihood of releasing chemicals and elements to the surrounding areas and at increased rates relative to unmined areas. Both mined and unmined mineralized areas can produce acid drainage from the formation and movement of highly acidic water rich in heavy metals. This acidic water forms principally through the chemical reaction of oxygenated surface water and shallow subsurface water with rocks that contain sulfide minerals, producing sulphuric acid. Heavy metals can be leached by the acid solution that comes in contact with mineralized rocks, a process that may be enhanced by bacterial action. The resulting fluids may be highly toxic and, when mixed with groundwater, surface water, and soil, may have harmful effects on humans, animals, and plants. Thus, understanding the geologic and hydrologic history of this area is a critical piece of the environmental puzzle in the Summitville area. The Summitville mine operators had ceased active mining and begun environmental remediation, including treatment of the heap-leach pile and installation of a water-treatment facility, when it declared bankruptcy in December 1992 and abandoned the mine site. The U.S. Environmental Protection Agency (EPA) immediately took over the Summitville site under EPA Superfund Emergency Response authority. Summitville has focused public attention on the environmental effects of modern mineral-resource development. Soon after the mine was abandoned, Federal, State, and local agencies, along with Alamosa River water users and private companies, began extensive studies at the mine site and surrounding areas. These studies included analysis of water, soil, livestock and vegetation. The role of the U.S. Geological Survey (USGS) was to provide geologic, hydrologic and agricultural information about the mine and surrounding area and to describe and evaluate the environmental condition of the Summitville mine and the downstream effects of the mine on the San Luis Valley (King 1995).

Colorado↗

Plant succession and greentree reservoir management: Implications for management and restoration of bottomland hardwood wetlands

Bottomland hardwood forests are distributed along rivers and streams throughout the central and eastern United States, with the greatest concentration in the Southeast. Past and projected losses of bottomland hardwoods and degradation of remaining stands suggest that habitat management and/or restoration strategies that target multiple species and multiple uses will be necessary to maintain, enhance, and restore flora and fauna within bottomland hardwood wetlands. A greentree reservoir is a current management strategy that entails manipulating water regimes to provide habitat for wintering waterfowl. We conducted a literature review and synthesis to determine the potential impacts of greentree reservoir management on plant succession within bottomland hardwood wetlands. Greentree reservoirs can impact vegetation establishment through several processes. Despite shortcomings of greentree reservoirs, designs similar to them could be very beneficial in restoring bottomland hardwood plant and animal communities from degraded forests provided water-level control and maintenance are substantially improved. Emulation of natural hydrologic regimes, including natural variability, could produce diverse bottomland hardwood plant communities and provide habitat for a variety of wildlife species.

Wetlands↗

Preface: Multiscale feedbacks in ecogeomorphology

Geomorphic systems are known to exhibit nonlinear responses to physical–biological feedbacks (Thornes, 1985; Baas, 2002; Reinhardt et al., 2010). These responses make understanding and/or predicting system response to change highly challenging. With growing concerns over ecosystem health, a pressing need exists for research that tries to elucidate these feedbacks (Jerolmack, 2008; Darby, 2010; National Research Council, 2010). A session was convened at the Fall 2008 meeting of the American Geophysical Union (AGU) to provide an outlet for some of this truly interdisciplinary and original research, which is central to understanding geomorphic and ecological dynamics. The session attracted over 39 contributions, which were divided into two well-attended oral sessions and a very busy poster session. This special issue presents new research from the AGU session, which highlights clear physical–biological feedbacks. The aim is to bring together contrasting perspectives on biological and geomorphic feedbacks in a diversity of physiographic settings, ranging from wetlands and estuaries, through rivers, to uplands. These papers highlight biological and physical feedbacks which involve the modulation or amplification of geomorphic processes. These papers will be of interest to a core geomorphology audience, and should also draw attention from the fields of ecohydraulics, hydroecology, ecohydrology, ecomorphology, biogeochemistry and biogeography, and biogeomorphology as well as the more traditional fields of hydrology, ecology and biology. In this preface to the special issue, we a) review past contributions to the emerging field of ecogeomorphology and related disciplines, b) provide some context for how this topical special issue came to fruition, and c) summarize the contributions to this special issue.

Geomorphology↗

The typological approach to submarine groundwater discharge (SGD)

Coastal zone managers need to factor submarine groundwater discharge (SGD) in their integration. SGD provides a pathway for the transfer of freshwater, and its dissolved chemical burden, from the land to the coastal ocean. SGD reduces salinities and provides nutrients to specialized coastal habitats. It also can be a pollutant source, often undetected, causing eutrophication and triggering nuisance algal blooms. Despite its importance, SGD remains somewhat of a mystery in most places because it is usually unseen and difficult to measure. SGD has been directly measured at only about a hundred sites worldwide. A typology generated by the Land-Ocean Interaction in the Coastal Zone (LOICZ) Project is one of the few tools globally available to coastal resource managers for identifying areas in their jurisdiction where SGD may be a confounding process. (LOICZ is a core project of the International Geosphere/Biosphere Programme.) Of the hundreds of globally distributed parameters in the LOICZ typology, a SGD subset of potentially relevant parameters may be culled. A quantitative combination of the relevant hydrological parameters can serve as a proxy for the SGD conditions not directly measured. Web-LOICZ View, geospatial software then provides an automated approach to clustering these data into groups of locations that have similar characteristics. It permits selection of variables, of the number of clusters desired, and of the clustering criteria, and provides means of testing predictive results against independent variables. Information on the occurrence of a variety of SGD indicators can then be incorporated into regional clustering analysis. With such tools, coastal managers can focus attention on the most likely sites of SGD in their jurisdiction and design the necessary measurement and modeling programs needed for integrated management.

Biogeochemistry↗

Sediment trapping and carbon sequestration in floodplains of the lower Atchafalaya Basin, LA: Allochthonous vs. autochthonous carbon sources

Recent studies suggest that about 2 Pg of organic C is stored on floodplains worldwide. The present study indicates the Atchafalaya River, fifth largest river in the United States in terms of discharge, traps 30 mm/y of sediment on average within its floodplain, which is the highest average non‐episodic rate of fluvial deposition on the U.S. Coastal Plain. We installed sediment sampling stations at 23 sites, normally in transect, in the Atchafalaya Basin; these sites represent the range of hydrogeomorphic conditions on the floodplain based on hydrologic connectivity with the river main stem. The rate of sedimentation translates into about 12.5 Tg/y and includes 694 Mg/y of organic C. Highest sedimentation rates are associated with areas of high connectivity to channels and prograding deltaic processes. The δ 13 C content suggests that 35% of deposited C is derived from river‐suspended sediment compared to litterfall in the Basin. Thus, much of the organic C sequestered is allochthonous material. However, isolated interior sites with limited connectivity to the channel may generate and sequester large amounts of autochthonous C. The substantial trapping of both auto‐ and allochthonous C (392 Mg/y) make this freshwater‐forested floodplain critical in storage of material before reaching the coastal delta and estuary. This C deposition rate (340 g C m ‐2 y ‐1 ) exceeds all other rates reported in recent Blue Carbon and Tidal Freshwater Forested Wetland studies. Atchafalaya C sequestration occurs in/near areas with tidal influence and like other coastal systems is an important site for trapping mineral and organic sediment and in global C cycling.

Louisiana↗

Water-Quality Assessment of the High Plains Aquifer, 1999-2004

Water quality of the High Plains aquifer was assessed for the period 1999-2004 as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. This effort represents the first systematic regional assessment of water quality in this nationally important aquifer. A stratified, nested group of studies was designed to assess linkages between the quality of water recharging the aquifer, the effect of transport through the hydrologic system on water quality, and the quality of the resource used for human consumption and agricultural applications. The stratified, nested design facilitated upscaling of monitoring results to unmonitored areas of the aquifer as well as upscaling of process understanding from local to regional scales.

Professional Paper↗

Hydrogeology, Ground-Water-Age Dating, Water Quality, and Vulnerability of Ground Water to Contamination in a Part of the Whitewater Valley Aquifer System near Richmond, Indiana, 2002-2003

Assessments of the vulnerability to contamination of ground-water sources used by public-water systems, as mandated by the Federal Safe Drinking Water Act Amendments of 1996, commonly have involved qualitative evaluations based on existing information on the geologic and hydrologic setting. The U.S. Geological Survey National Water-Quality Assessment Program has identified ground-water-age dating; detailed water-quality analyses of nitrate, pesticides, trace elements, and wastewater-related organic compounds; and assessed natural processes that affect those constituents as potential, unique improvements to existing methods of qualitative vulnerability assessment. To evaluate the improvement from use of these methods, in 2002 and 2003, the U.S. Geological Survey, in cooperation with the City of Richmond, Indiana, compiled and interpreted hydrogeologic data and chemical analyses of water samples from seven wells in a part of the Whitewater Valley aquifer system in a former glacial valley near Richmond. This study investigated the application of ground-water-age dating, dissolved-gas analyses, and detailed water-quality analyses to quantitatively evaluate the vulnerability of ground water to contamination and to identify processes that affect the vulnerability to specific contaminants in an area of post-1972 greenfield development. The aquifer system in the study area includes an unconfined sand and gravel aquifer used for public-water supply (upper aquifer) and a confined sand and gravel aquifer (lower aquifer) separated by a till confining unit. Several hydrogeologic and cultural measures indicate that the upper aquifer is qualitatively vulnerable to contamination: the upper aquifer is unconfined and has a shallow depth to the water table (from about 4.75 to 14 feet below land surface), low-permeability sediments in the unsaturated zone are thin (less than 10 feet thick), estimated ground-water-flow rates through the upper aquifer are relatively rapid (the highest estimated rates ranged from 0.44 to about 5.0 feet per day), and potential contaminant sources were present. Ground-water-age dates indicate that ground-water samples represented recharge from about the time greenfield development began south of the ground-water-flow divide and that changes in water quality would lag changes in contaminant inputs. Estimates of ground-water age, computed with dichlorodifluoromethane (CFC-12) and trichlorotrifluoroethane (CFC-113) concentrations in water samples collected from seven observation wells in February and March 2003, indicated that water in the upper aquifer had recharged within about 13 to 30 years before sampling. Ground-water ages were youngest (from about 13 to 15 years since recharge) in water from the shallow wells along the glacial-valley margin and oldest (30 years) in water from a well at the base of the aquifer in the valley center. Ground-water ages determined for the shallow wells may be affected by mixing of recent recharge with older ground water from deeper in the aquifer, as indicated by upward hydraulic gradients between paired shallow and deep wells in the upper aquifer. Other parts of the Whitewater Valley aquifer system with similar hydrogeologic characteristics could be expected to have similarly young ground-water ages and residence times. Analyses of water samples collected from the seven observation wells in August and September 2002 indicated that concentrations of chloride, sodium, and nitrate generally were larger in ground water from the upper aquifer than in other parts of the Whitewater Valley aquifer system. Drinking-water-quality standards for Indiana were exceeded in water samples from one well for chloride concentrations, from four wells for dissolved-solids concentrations, and from one well for nitrate concentrations. Application of low-level methods for trace-element analyses determined that concentrations of aluminum, cobalt, iron, lithium, molybdenum, nickel, selenium, uranium, vanadium, and zinc were less than or equal to 8 micrograms per liter; concentrations of arsenic, cadmium, chromium, and copper were less than or equal to 1 microgram per liter. Application of low-level analytical methods to water samples enabled the detection of several pesticides and volatile, semivolatile, and wastewater-related organic compounds; concentrations of individual pesticides and volatile organic compounds were less than 0.1 microgram per liter and concentrations of individual wastewater organic compounds were less than 0.5 microgram per liter. The low-level analytical methods will provide useful data with which to compare future changes in water quality. Results of detailed water-quality analyses, ground-waterage dating, and dissolved-gas analyses indicated the vulnerability of ground water to specific types of contamination, the sequence of contaminant introduction to the aquifer relative to greenfield development, and processes that may mitigate the contamination. Concentrations of chloride and sodium and chloride/bromide weight ratios in sampled water from five wells indicated the vulnerability of the upper aquifer to roaddeicer contamination. Ground-water-age estimates from these wells indicated the onset of upgradient road-deicer use within the previous 25 years. Nitrate in the upper aquifer predates the post-1972 development, based on a ground-water-age date (30 years) and the nitrate concentration (5.12 milligrams per liter as nitrogen) in water from a deep well. Vulnerability of the aquifer to nitrate contamination is limited partially by denitrification. Detection of one to four atrazine transformation products in water samples from the upper aquifer indicated biological and hydrochemical processes that may limit the vulnerability of the ground water to atrazine contamination. Microbial processes also may limit the aquifer vulnerability to small inputs of halogenated aliphatic compounds, as indicated by microbial transformations of trichlorofluoromethane and trichlorotrifluoroethane relative to dichlorodifluoromethane. The vulnerability of ground water to contamination in other parts of the aquifer system also may be mitigated by hydrodynamic dispersion and biologically mediated transformations of nitrate, pesticides, and some organic compounds. Identification of the sequence of contamination and processes affecting the vulnerability of ground water to contamination would have been unlikely with conventional assessment methods.

Indiana, Ohio↗

Stream network capacity to support beaver dams in the Tualatin River Basin, northwestern Oregon

Significant Findings Beaver dams can help streams connect to their floodplains. These floodplain connections can expand the range of available aquatic habitats and aid in the restoration of stream and floodplain function and processes. American beavers ( Castor canadensis ) occupy a wide variety of aquatic habitats; however, their ability to build dams, the agent of stream and floodplain change, is constrained in large part by three physical variables—local vegetation, topography, and hydrology. These three physical variables are combined in the Beaver Restoration Assessment Tool (BRAT), a geographic information system-based utility that uses a Fuzzy Inference System (FIS) to estimate the capacity of each reach within a stream network to support beaver dams. In this study, version 1.0 of BRAT was adapted and applied to the entire perennial stream network of Tualatin River Basin in northwestern Oregon. Beaver-dam locations in the Tualatin River Basin were compiled to (1) define the distribution of dams in the basin during 2013–16 and (2) provide necessary data for calibrating and validating BRAT predictions. BRAT was calibrated to the current known distribution of dams, as compiled in the inventory. The input FIS equations of the original BRAT model were adjusted to account for local topographic conditions; specifically, the low gradient of many streams in the basin, although subsequent updates to BRAT may obviate the need for these changes. Results from this modified BRAT model reasonably simulated the dam inventory. Results show that beavers can currently build the greatest density of dams, defined as number of dams per kilometer of stream, in the higher-gradient forested streams of the basin, whereas they can build the fewest number of dams per kilometer in urban streams along the lower-gradient valley floor. Estimated dam density was generally 5-15 dams per kilometer (km) for forested streams and 2-4 dams/km for urban streams. Improving riparian vegetation along urban streams may allow beavers to build on average four additional dams per kilometer compared to current conditions. Results from this study may help inform local stream and stormwater management by (1) identifying stream reaches with the most potential to support beaver dams, (2) determining the likely factors limiting potential for dam building, and (3) identifying potential areas where dam building may affect human infrastructure.

Oregon↗