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USGS1961

Progress report on wells penetrating artesian aquifers in South Dakota

Artesian aquifers underlie most of South Dakota and large areas in adjacent States. About 15,000 wells have been completed since 1881 in these aquifers within South Dakota. Many wells that originally flowed have ceased to flow and have been abandoned, and others have been equipped with pumps. Many thousands, however, continue to flow. This report presents data collected through June 1958 and includes records of 1,045 flowing and nonflowing artesian wells Sufficient information is not available at present (1958) to permit a detailed description of the geologic and hydrologic properties of artesian aquifers or their correlation in South Dakota. The description of the various aquifers given in this report is, therefore, necessarily a general one.

South Dakota↗

USGS2005

Amphibian occurrence and aquatic invaders in a changing landscape: Implications for wetland mitigation in the Willamette Valley, Oregon

Despite concern about the conservation status of amphibians in western North America, few field studies have documented occurrence patterns of amphibians relative to potential stressors. We surveyed wetland fauna in Oregon's Willamette Valley and used an information theoretic approach (AIC) to rank the associations between native amphibian breeding occurrence and wetland characteristics, non-native aquatic predators, and landscape characteristics in a mixed urban-agricultural landscape. Best predictors varied among the five native amphibians and were generally consistent with life history differences. Pacific tree frog (Pseudacris regilla) and long-toed salamander (Ambystoma macrodactylum) occurrence was best predicted by the absence of non-native fish. Northern red-legged frog (Rana a. aurora) and northwestern salamander (Ambystoma gracile) were most strongly related to wetland vegetative characteristics. The occurrence of rough-skinned newts (Taricha granulosa), a migratory species that makes extensive use of terrestrial habitats, was best predicted by greater forest cover within 1 km. The absence of non-native fish was a strong predictor of occurrence for four of the five native species. In contrast, amphibians were not strongly related to native fish presence. We found little evidence supporting negative effects of the presence of breeding populations of bullfrog (Rana catesbeiana) on any native species. Only the two Ambystoma salamanders were associated with wetland permanence. Northwestern salamanders (which usually have a multi-year larval stage) were associated with permanent waters, while long-toed salamanders were associated with temporary wetlands. Although all the species make some use of upland habitats, only one (rough-skinned newt) was strongly associated with surrounding landscape conditions. Instead, our analysis suggests that within-wetland characteristics best predict amphibian occurrence in this region. We recommend that wetland preservation and mitigation efforts concentrate on sites lacking non-native fish for the conservation of native amphibians in the Willamette Valley and other western lowlands.

Wetlands↗

USGS1998

Regional characterization of land cover using multiple sources of data

Many organizations require accurate intermediate-scale land-cover information for many applications, including modeling nutrient and pesticide runoff, understanding spatial patterns of biodiversity, land-use planning, and policy development. While many techniques have been successfully used to classify land cover in relatively small regions, there are substantial obstacles in applying these methods to large, multiscene regions. The purpose of this study was to generate and evaluate a large region land-cover classification product using a multiple-layer land-characteristics database approach. To derive land-cover information, mosaicked Landsat thematic mapper (TM) scenes were analyzed in conjunction with digital elevation data (and derived slope, aspect, and shaded relief), population census information, Defense Meteorological Satellite Program city lights data, prior land-use and land-cover data, digital line graph data, and National Wetlands Inventory data. Both leaf-on and leaf-off TM data sets were analyzed. The study area was U.S. Federal Region III, which includes the states of Pennsylvania, Virginia, Maryland, Delaware, and West Virginia. The general procedure involved (1) generating mosaics of multiple scenes of leaves-on TM data using histogram equalization methods; (2) clustering mosaics into 100 spectral classes using unsupervised classification; (3) interpreting and labeling spectral classes into approximately 15 land-cover categories (analogous to Anderson Level 1 and 2 classes) using aerial photographs; (4) developing decision-making rules and models using from one to several ancillary data layers to resolve confusion in spectral classes that represented two or more targeted land-cover categories; and (5) incorporating data from other sources (for example, leaf-off TM data and National Wetlands Inventory data) to yield a final land-cover product. Although standard accuracy assessments were not done, a series of consistency checks using available sources of land-cover information were conducted to evaluate the effectiveness of this approach for generating accurate land-cover information for large regions.

Photogrammetric Engineering and Remote Sensing↗

USGS2019

Flood-frequency estimates for Ohio streamgages based on data through water year 2015 and techniques for estimating flood-frequency characteristics of rural, unregulated Ohio streams

Estimates of the magnitudes of annual peak streamflows with annual exceedance probabilities of 0.5, 0.2, 0.1, 0.04, 0.02, 0.01, and 0.002 (equivalent to recurrence intervals of 2-, 5-, 10-, 25-, 50-, 100-, and 500-years, respectively) were computed for 391 streamgages in Ohio and adjacent states based on data collected through the 2015 water year. The flood-frequency estimates were computed following guidance outlined in Bulletin 17C, developed by the Advisory Committee on Water Information. The Bulletin 17C guidelines retain the basic statistical framework of the superseded Bulletin 17B guidelines; however, the Bulletin 17C guidelines add several enhancements including an improved method of moments approach for fitting the log-Pearson Type III (LPIII) distribution to the flood peaks (called the expected moments algorithm), a generalization of the Grubbs Beck low-outlier test (called the Multiple Grubbs Beck test) that permits identification of multiple potentially influential low floods, and new methods for estimating regional skew and uncertainty. Equations for estimating flood-frequency characteristics at ungaged sites on rural, unregulated streams in Ohio were developed with a two-step process involving ordinary least-squares and generalized least-squares regression techniques. Data from 333 streamgages with 10 or more years of unregulated record were screened for redundancy and a regression dataset was selected that was composed of flood-frequency and basin-characteristic data for 275 streamgages in Ohio and adjacent states. Two sets of equations were developed—one set, referred to as the “simple model,” uses regression region and drainage area as regressor variables, and a second set, referred to as the “full model,” uses regression region, drainage area, main-channel slope, and the percentage of the watershed covered by water and wetlands as regressor variables. The average standard errors of prediction ranged from about 40.5 to 46.5 percent for the simple-model equations and from about 37.2 to 40.3 percent for the full-model equations. For sites meeting the rural, unregulated criteria, flood-frequency estimates determined by means of LPIII analyses are reported along with weighted flood-frequency estimates, computed as a function of the LPIII estimates and the regression estimates. For sites with homogenous periods of regulation, flood-frequency estimates determined by means of LPIII analyses are reported. Ninety-five percent confidence limits are reported for all estimates. Values of regressor variables were determined from digital spatial datasets by means of a geographic information system (GIS). The GIS datasets and the new full-model equations have been incorporated into Ohio’s StreamStats application, a web-based, GIS-backed system designed to facilitate the estimation of streamflow statistics at ungaged locations on streams. Seasonal patterns in peak flows were assessed for 295 streamgages in Ohio. Annual peak flows occurred most frequently between January and April, with March having the highest frequency of occurrence. The month with the fewest number of annual peaks was October. Peak-of-record flows occurred most frequently in March, followed by January (months in which two of Ohio’s most severe widespread floods in recent history occurred). None of the peak-of-record flows occurred in October and only two occurred in November. Temporal trend in annual peak flows were assessed for 133 streamgages on unregulated streams in Ohio with 30 or more years of systematic record. Trends were assessed by computing the rank correlation (as measured with the two-sided Kendall’s tau statistic) between time and annual peak flows. Weak but statistically significant trends were indicated at 15 of the 133 streamgages. Of the 15 streamgages with significant trend in annual peak flows, 12 had an upward trend (positive tau) and 3 had a downward trend (negative tau). All 12 streamgages with positive tau values were at latitudes north of 40°33', and streamgages with negative tau values were at latitudes south of 40°33'.

Ohio↗

USGS1996

Level II scour analysis for Bridge 10 (HANCTH00010010) on Town Highway 1, crossing the White River, Hancock, Vermont

This report provides the results of a detailed Level II analysis of scour potential at structure HANCTH00010010 on town highway 1 crossing the White River, Hancock, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province of central Vermont. The 59.8-mi 2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is primarily grass with trees and brush on the immediate channel banks. In the study area, the White River has a sinuous channel with a slope of approximately 0.005 ft/ft, an average channel top width of 104 ft and an average channel depth of 6 ft. The predominant channel bed materials are gravel and cobble with a median grain size (D50) of 98.9 mm (0.325 ft). The geomorphic assessment at the time of the Level I and Level II site visit on November 15, 1994, indicated that the reach was stable. The town highway 1 crossing of the White River is a 91-ft-long, two-lane bridge consisting of one 89-foot steel-beam span (Vermont Agency of Transportation, written communication, August 26, 1994). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 15 degrees to the opening while the opening-skew-to-roadway is 0 degrees. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows was 0.0 feet. Abutment scour ranged from 13.1 to 17.1 ft. The worst-case abutment scour occurred at the 500-year discharge. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scoured-streambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particle-size distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and others, 1995, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Vermont↗

USGS2013

Significance of headwater streams and perennial springs in ecological monitoring in Shenandoah National Park

Shenandoah National Park has been monitoring water chemistry and benthic macroinvertebrates in stream ecosystems since 1979. These monitoring efforts were designed to assess the status and trends in stream condition associated with atmospheric deposition (acid rain) and changes in forest health due to gypsy moth infestations. The primary objective of the present research was to determine whether the current long-term macroinvertebrate and water-quality monitoring program in Shenandoah National Park was failing to capture important information on the status and trends in stream condition by not sufficiently representing smaller, headwater streams. The current benthic-macroinvertebrate and water-chemistry sampling designs do not include routine collection of data from streams with contributing watershed areas smaller than 100 hectares, even though these small streams represent the overwhelming proportion of total stream length in the park. In this study, we sampled headwater sites, including headwater stream reaches (contributing watershed area approximately 100 hectares (ha) and perennial springs, in the park for aquatic macroinvertebrates and water chemistry and compared the results with current and historical data collected at long-term ecological monitoring (LTEM) sites on larger streams routinely sampled as part of ongoing monitoring efforts. The larger purpose of the study was to inform ongoing efforts by park managers to evaluate the effectiveness and efficiency of the current aquatic monitoring program in light of other potential stressors (for example, climate change) and limited resources. Our results revealed several important findings that could influence management decisions regarding long-term monitoring of park streams. First, we found that biological indicators of stream condition at headwater sites and perennial springs generally were more indicative of lower habitat quality and were more spatially variable than those observed at sites on routinely monitored larger streams. We hypothesized that poorer stream condition observed in smaller streams was due to stream drying that occurs more frequently in headwater areas. We also found that biological and water-chemistry measures responded differently to landscape drivers. Variation in most biological endpoints was driven primarily by stream size and was only secondarily associated with bedrock geology. In contrast, water chemistry showed essentially the opposite pattern, with underlying geology explaining much of the variation and stream size being of secondary importance. Therefore, expanding the LTEM program to include headwater areas would yield substantially different biological information, whereas broad inferences regarding spatial patterns in water chemistry would probably not change. Although significant differences in community composition were observed among streams of different sizes, no taxa were unique to headwater sites. All taxa collected at the 45 headwater sites also had been collected at one or more LTEM sites during one or more years. This observation indicates that headwater sites in the park may be structured by biotic nestedness; consequently, focusing management efforts on preserving the species pool at the larger LTEM sites would likely result in the protection of most taxa parkwide. Finally, linkages (correlations) between water chemistry and biological measures of stream condition were signficantly stronger when assessed at the LTEM sites than when assessed at the springs or headwater sites, indicating that conditions at downstream sites may be better indicators of water-quality trends.

Virginia↗

USGS2026

Ecology of reintroduced Rocky Mountain bighorn sheep in Dinosaur National Monument

Translocations have been widely used to restore and conserve bighorn sheep ( Ovis canadensis ) populations in North America. Some translocations have been successful, but many populations remain small and genetically isolated. Population structure can influence the viability and long-term success of reintroductions. Social ungulates often function as interconnected subpopulations (metapopulations); however, few studies evaluate subpopulation sizes, connectivity, and genetic diversity within metapopulations. To address this gap, we conducted a comprehensive study of a reintroduced Rocky Mountain bighorn sheep ( Ovis canadensis canadensis ) population in Dinosaur National Monument in Colorado and Utah, USA, between 2006–2020. We analyzed global positioning system (GPS) radio-collar data, genetic samples, and results of health testing to evaluate abundance, distribution, genetic structure and diversity, habitat use, movement and connectivity, and presence of or exposure to respiratory pathogens. We integrated these analyses to evaluate the outcomes of a reintroduction effort that began in 1952, over 70 years ago, and to inform management decisions in Dinosaur National Monument. We also provide a framework for evaluating metapopulation processes, including a non-invasive approach that links genetic structure with Bayesian spatial capture-recapture analyses to estimate subpopulation sizes. Despite models indicating continuous suitable habitat, we found a spatially structured population with at least 4 subpopulations with constrained connectivity. Evidence from step selection and density analyses suggested that movement among subpopulations may be limited by semi-permeable barriers including rivers and human disturbance, which could contribute to maintenance of spatial structure over time. In 2006, antibody to Mycoplasma ovipneumoniae was detected in all geographically and genetically distinct subpopulations. Widespread clinical signs of disease and a confirmed exposure to M. ovipneumoniae in 2019 indicate a long-term disease challenge. Proximity to domestic sheep creates repeated opportunities for introduction of new M. ovipneumoniae strains. We estimated abundance in 2019 at 109 (95% CrI = 87–133), composed of subpopulations ranging from 18–39 animals (95% CrIs from 11–50). Genetic diversity was relatively high compared to other reintroduced and native Rocky Mountain bighorn sheep populations, which is likely a consequence of multiple translocations from different sources. Three of 4 subpopulation centers generally aligned with the locations of original translocation release sites. Persistence in the presence of pathogens may be facilitated by metapopulation structure and moderately high genetic diversity. Conversely, metapopulation structure can also facilitate pathogen persistence. Our approach offers a path to advance understanding of the population ecology of reintroduced bighorn sheep and can inform effective conservation and management of their populations.

Colorado, Wyoming↗

USGS2013

National Park Service Vegetation Inventory Program, Cuyahoga Valley National Park, Ohio

The National Park Service (NPS) Vegetation Inventory Program (VIP) is an effort to classify, describe, and map existing vegetation of national park units for the NPS Natural Resource Inventory and Monitoring (I&M) Program. The NPS VIP is managed by the NPS Biological Resources Management Division and provides baseline vegetation information to the NPS Natural Resource I&M Program. The U.S. Geological Survey (USGS) Vegetation Characterization Program lends a cooperative role in the NPS VIP. The USGS Upper Midwest Environmental Sciences Center, NatureServe, and NPS Cuyahoga Valley National Park (CUVA) have completed vegetation classification and mapping of CUVA. Mappers, ecologists, and botanists collaborated to identify and describe vegetation types within the National Vegetation Classification Standard (NVCS) and to determine how best to map them by using aerial imagery. The team collected data from 221 vegetation plots within CUVA to develop detailed descriptions of vegetation types. Data from 50 verification sites were also collected to test both the key to vegetation types and the application of vegetation types to a sample set of map polygons. Furthermore, data from 647 accuracy assessment (AA) sites were collected (of which 643 were used to test accuracy of the vegetation map layer). These data sets led to the identification of 45 vegetation types at the association level in the NVCS at CUVA. A total of 44 map classes were developed to map the vegetation and general land cover of CUVA, including the following: 29 map classes represent natural/semi-natural vegetation types in the NVCS, 12 map classes represent cultural vegetation (agricultural and developed) in the NVCS, and 3 map classes represent non-vegetation features (open-water bodies). Features were interpreted from viewing color-infrared digital aerial imagery dated October 2010 (during peak leaf-phenology change of trees) via digital onscreen three-dimensional stereoscopic workflow systems in geographic information systems (GIS). The interpreted data were digitally and spatially referenced, thus making the spatial database layers usable in GIS. Polygon units were mapped to either a 0.5 ha or 0.25 ha minimum mapping unit, depending on vegetation type. A geodatabase containing various feature-class layers and tables shows the locations of vegetation types and general land cover (vegetation map), vegetation plot samples, verification sites, AA sites, project boundary extent, and aerial photographic centers. The feature-class layer and relate tables for the CUVA vegetation map provides 4,640 polygons of detailed attribute data covering 13,288.4 ha, with an average polygon size of 2.9 ha. Summary reports generated from the vegetation map layer show map classes representing natural/semi-natural types in the NVCS apply to 4,151 polygons (89.4% of polygons) and cover 11,225.0 ha (84.5%) of the map extent. Of these polygons, the map layer shows CUVA to be 74.4% forest (9,888.8 ha), 2.5% shrubland (329.7 ha), and 7.6% herbaceous vegetation cover (1,006.5 ha). Map classes representing cultural types in the NVCS apply to 435 polygons (9.4% of polygons) and cover 1,825.7 ha (13.7%) of the map extent. Map classes representing non-NVCS units (open water) apply to 54 polygons (1.2% of polygons) and cover 237.7 ha (1.8%) of the map extent. A thematic AA study was conducted of map classes representing natural/semi-natural types in the NVCS. Results present an overall accuracy of 80.7% (kappa index of 79.5%) based on data from 643 of the 647 AA sites. Most individual map-class themes exceed the NPS VIP standard of 80% with a 90% confidence interval. The CUVA vegetation mapping project delivers many geospatial and vegetation data products in hardcopy and/or digital formats. These products consist of an in-depth project report discussing methods and results, which include descriptions and a dichotomous key to vegetation types, map classification and map-class descriptions, and a contingency table showing AA results. The suite of products also includes a database of vegetation plots, verification sites, and AA sites; digital pictures of field sites; field data sheets; aerial photographic imagery; hardcopy and digital maps; and a geodatabase of vegetation types and land cover (map layer), fieldwork locations (vegetation plots, verification sites, and AA sites), aerial photographic index, project boundary, and metadata. All geospatial products are projected in Universal Transverse Mercator, Zone 17, by using the North American Datum of 1983. Information on the NPS VIP and completed park mapping projects are located on the Internet at <http://science.nature.nps.gov/im/inventory/veg> and <http://www.usgs.gov/core_science_systems/csas/vip/index.html>.

Natural Resource Technical Report↗

USGS2018

Measuring and evaluating ecological flows from streams to regions: Steps towards national coverage

Living aquatic communities are largely determined and maintained by the volume and quality of flowing waters, both within lotic systems and in receiving waters of coastal systems. However, flow is one of the most frequently and extensively altered features of rivers and streams; alteration effects are likely to be exacerbated by climate change. Lotic systems vary and different fish species need different environmental conditions, and distinct problems are evident at various spatial scales. New synoptic flow and biological information now make it possible to evaluate the effects of altered flows throughout the Great Lakes Region at scales from the stream reach to the Region. We used estimates of river and streamflow and observed fish abundances to develop tools that specify the response of fish to alterations in those flows. We fit the logistic model to a cumulative fish abundance curve as a function of yield providing an empirical means to develop models of the response of cumulative fish abundance to flows. Response zones of yield for each species in each system type (based on size and thermal class) illustrate how criteria may be developed that can be used in decision‐making for management of flows. In our example application, we evaluate both the general response of brook trout ( Salvelinus fontinalis ) abundances (and fish diversity) to changes in flows and assess the sensitivity of each stream fish community to flow alteration. Mapping stream sensitivity to flow alteration throughout the US Great Lakes Region with a multiscale spatial framework showed how regional variability in sensitivity for any fish species or assemblage may be evaluated and provides managers with information to help determine where the best opportunities for protection or restoration of streamflows and associated communities exist. These results provide valuable tools and critical information to managers responsible for balancing water uses and maintaining high quality lotic ecosystems. These methods may be applied to any geographic region and can be extended nationally or globally, where flow, temperature, fish and landscape data are available.

Illinois, Indiana, Michigan, Minnesota, New York, ↗

USGS1996

Level II scour analysis for Bridge 49 (BRIDTH00530049) on Town Highway 53, crossing North Branch Ottauquechee River, Bridgewater, Vermont

This report provides the results of a detailed Level II analysis of scour potential at structure BRIDTH00530049 on town highway 53 crossing the North Branch of the Ottauquechee River, Bridgewater, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge available from VTAOT files was compiled prior to conducting Level I and Level II analyses and can be found in Appendix D. The site is in the Green Mountain physiographic province of central Vermont in the town of Bridgewater. The 26.6-mi 2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the immediate banks have woody vegetation coverage with grass on the overbanks. In the study area, the North Branch Ottauquechee River has a sinuous channel with a slope of approximately 0.0075 ft/ft, an average channel top width of 66 ft and an average channel depth of 6 ft. The predominant channel bed material is cobble and gravel (D 50 is 68.4 mm or 0.224 ft). The geomorphic assessment at the time of the Level I and Level II site visit on October 27, 1994, indicated that the reach was stable. The town highway 53 crossing of the North Branch of the Ottauquechee Riveris a 51-ftlong, one-lane bridge consisting of one 49-foot steel-beam span (Vermont Agency of Transportation, written communication, August 25, 1994). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is not skewed to the opening and the opening-skew-to-roadway is zero degrees. The scour protection measures in place at the site are type-1 stone fill (less than 12 inches diameter) along the upstream left wingwall and type-2 stone fill (less than 36 inches diameter) along the upstream right wingwall. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others, 1993). Total scour at a highway crossing is comprised of three components: 1) long-term aggradation or degradation; 2) contraction scour (due to reduction in flow area caused by a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute scour depths for contraction and local scour and a summary of the results follows. Contraction scour for all modelled flows was 0 feet. Abutment scour ranged from 2.3 to 12.0 feet and the worst-case abutment scour also occurred at the 500-year discharge. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scoured-streambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particle-size distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and others, 1993, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Vermont↗

USGS2003

Residence times and nitrate transport in ground water discharging to streams in the Chesapeake Bay Watershed

One of the major water-quality problems in the Chesapeake Bay is an overabundance of nutrients from the streams and rivers that discharge to the Bay. Some of these nutrients are from nonpoint sources such as atmospheric deposition, agricultural manure and fertilizer, and septic systems. The effects of efforts to control nonpoint sources, however, can be difficult to quantify because of the lag time between changes at the land surface and the response in the base-flow (ground water) component of streams. To help resource managers understand the lag time between implementation of management practices and subsequent response in the nutrient concentrations in the base-flow component of streamflow, a study of ground-water discharge, residence time, and nitrate transport in springs throughout the Chesapeake Bay Watershed and in four smaller watersheds in selected hydrogeomorphic regions (HGMRs) was conducted. The four watersheds were in the Coastal Plain Uplands, Piedmont crystalline, Valley and Ridge carbonate, and Valley and Ridge siliciclastic HGMRs. A study of springs to estimate an apparent age of the ground water was based on analyses for concentrations of chlorofluorocarbons in water samples collected from 48 springs in the Chesapeake Bay Watershed. Results of the analysis indicate that median age for all the samples was 10 years, with the 25th percentile having an age of 7 years and the 75th percentile having an age of 13 years. Although the number of samples collected in each HGMR was limited, there did not appear to be distinct differences in the ages between the HGMRs. The ranges were similar between the major HGMRs above the Fall Line (modern to about 50 years), with only two HGMRs of small geographic extent (Piedmont carbonate and Mesozoic Lowland) having ranges of modern to about 10 years. The median values of all the HGMRs ranged from 7 to 11 years. Not enough samples were collected in the Coastal Plain for comparison. Spring samples showed slightly younger water under wet conditions than under dry conditions. The apparent age of water from wells, springs, and other ground-water discharge points in the four targeted watersheds was modern to 60 years, which was similar to the apparent ages from the spring study. In the Pocomoke River Watershed in the Coastal Plain Uplands HGMR, the apparent age of ground-water samples ranged from 0 to 60 years; the ages in the vicinity of the streams ranged from 0 to 23 years. The apparent ages of ground water in the Polecat Creek Watershed in the Piedmont crystalline HGMR ranged from 2 to 30 years. The apparent ages of water from wells in the Muddy Creek Watershed in the Valley and Ridge carbonate HGMR ranged from 10 to 20 years (except for a single sample that was 45 years). The ages in the East Mahantango Creek Watershed in the Valley and Ridge siliciclastic HGMR ranged from 0 to 50 years. The distribution in apparent age of water from wells in the targeted watersheds, however, generally is older than that for water from the springs. The median age of water from wells in the Muddy Creek Watershed, for example, was 15 years, compared to 11 years for the water from the springs in that watershed, and less than 10 years for water from all springs in the spring study. The similarity in the ranges in apparent age of water from the wells and from the springs shows that the samples from the targeted watersheds and springs have bracketed the range of apparent ages that would be expected in the shallow ground-water-flow systems throughout the Chesapeake Bay Watershed. The apparent age of water from individual wells does not necessarily represent the entire distribution of ages of the discharging ground water, and it is this distribution of ages that affects the response of nutrient concentrations in stream base flow. Nutrient-reduction scenarios were modeled for two watersheds for which the distribution of apparent ground-water ages was available, the East Mahantango Creek Watershed in the Valley and Ridge siliciclastic HGMR and the Locust Grove Watershed in the Coastal Plain Uplands HGMR. A nutrient-reduction scenario was created for East Mahantango Creek, where the average residence time was determined to be approximately 10 years on the basis of the output of particle tracking from a ground-water-ﬂow model. This scenario showed decreases of nearly 50 percent in base-ﬂow concentrations of nitrate in streams within the ﬁrst year after the reduction in nitrogen input; smaller reductions in nitrate concentration occurred in each subsequent year. A second scenario for that same watershed, in which the same 10-year average residence time was assumed and an exponential model was used for analysis, showed that a 50-percent reduction in base-ﬂow concentrations of nitrate could take up to 5 years. For the Locust Grove Watershed, in which an average residence time of 32 years was assumed, simulation with the exponential model showed that it may take more than 20 years to achieve a 50-percent reduction in base-ﬂow concentra-tions of nitrate. Although it was not possible to construct such scenarios for all watersheds, these examples show the range of possible responses to changes in nutrient inputs in two very different types of watersheds. Findings from this study include information on factors that affect ground-water age, spatial distribution of ages, and nitrogen transport. In the East Mahantango Creek Watershed and the Polecat Creek Watershed, the residence time varied spatially depending on the position of the ﬂow path, and temporally depending on the recharge conditions. Generally, ground water in areas near the stream had short residence times and the water in upland areas had longer residence times. Water traveling through deep layers had longer residence times than water traveling through shallow layers, and residence times were faster under high recharge conditions than low recharge conditions. Ground water in the Pocomoke Watershed exhibits a similar pattern: younger water discharges to small order streams in headwater basins and older water discharges to larger streams near the basin outlet. Factors affecting nitrogen transport in ground water include spatial and temporal variation in input sources, ground-water age, and aquifer processes that lead to denitriﬁcation. Spatial and temporal variations in nitrogen sources affect all the watersheds. Tributaries with higher inputs of nitrogen have higher concentrations in stream base ﬂow. Areas where nitrogen application rates have increased over time show an age-nitrate relation in ground-water samples. The age-nitrate relation can be affected by denitriﬁcation, which occurs in Pocomoke and East Mahantango Creeks but is not evident in Polecat and Muddy Creeks. In East Mahantango Creek, the level of denitriﬁcation is signiﬁcant in water with residence times greater than 20 years, but because this is a small component of overall ground-water discharge to a stream, it may not remove a signiﬁcant quantity of nitrogen from the system. Denitriﬁcation in Pocomoke Creek is signiﬁcant and appears to affect mostly older water discharging to streams. Therefore, if most of the nitrogen entering these two streams is associated with the discharge of younger ground water, denitriﬁcation may not greatly affect the overall nitrogen delivery to these streams. Other ﬁndings of this study show that nitrate in ground water discharging along preferential ﬂow paths may not be affected by natural processes, such as denitriﬁcation or uptake by riparian vegetation. Seeps to swales and ditches beneath the north uplands at Polecat Creek indicate a shallow water table and discharge of young ground water whereas the absence of such seeps on the south side indicates a deep water table and a lack of young ground water. Similarly, discharge at the base of the slope and to the valley wetland south of the creek but not north of the creek indicates a different role for the riparian forest on the two sides of the creek. In many of the systems where water discharges at the base of slopes to wetlands, ditches have been dug to drain the valley. Such drainage circumvents possible removal of nitrate by riparian vegetation. Because ground-water residence times do not appear directly related to the HGMRs, the targeting of management practices will achieve the most rapid response in water quality if directed at 1) watersheds with large agricultural sources of nitrate, 2) areas with the shortest ground-water-ﬂow paths and 3) areas not affected by signiﬁcant denitriﬁcation. The fastest response in stream base-ﬂow concentrations of nitrogen to implementation of management practices would be to implement practices in those areas with the highest loads rather than attempt to target practices on the basis of HGMR stratiﬁcation. Overall ﬁndings of the study indicate that 1) ground-water contributions to nitrogen in streamﬂow are signiﬁcant, 2) some response to management practices should be evident in base-ﬂow concentrations of nitrogen and loads within 1 to 5 years in watersheds with the shortest average residence times, but response time may be closer to 20 years in watersheds with longer average ground-water residence times, 3) the majority of the response in ground-water discharge to any changes in management practices will be distributed over a 10-year time period even in the watersheds with the fastest response times, and 4) given that half the streamﬂow is from ground-water discharge and the other half is runoff or soil water, about 90 percent of total water being discharged to a stream will be less than about a decade old; therefore, full implementation of nutrient reductions may result in improved streamwater quality in about a decade. In the more-likely scenario of gradual source reduction, the reduction in concentrations of nitrate in streams and aquifers would take longer than the examples shown here.

Chesapeake Bay watershed↗

USGS2014

Aquaculture disturbance impacts the diet but not ecological linkages of a ubiquitous predatory fish

Aquaculture operations are a frequent and prominent cause of anthropogenic disturbance to marine and estuarine communities and may alter species composition and abundance. However, little is known about how such disturbances affect trophic linkages or ecosystem functions. In Puget Sound, Washington, aquaculture of the Pacific geoduck clam ( Panopea generosa ) is increasing and involves placing nets and polyvinyl chloride (PVC) tubes in intertidal areas to protect juvenile geoducks from predators. Initial studies of the structured phase of the farming cycle have documented limited impacts on the abundance of some species. To examine the effect of geoduck aquaculture on ecological linkages, the trophic relationships of a local ubiquitous consumer, Pacific staghorn sculpin ( Leptocottus armatus ), to its invertebrate prey were compared between geoduck aquaculture sites and nearby reference areas with no aquaculture. Mark-recapture data indicated that sculpin exhibit local site fidelity to cultured and reference areas. The stomach contents of sculpin and stable isotope signatures of sculpin and their prey were examined to study the trophic ecology of cultured and reference areas. Results showed that the structured phase of geoduck aquaculture initiated some changes to staghorn sculpin ecology, as reflected in sculpin diet through stomach content analysis. However, carbon and nitrogen stable isotopes revealed that the general food web function of sculpin remained unchanged. The source of carbon at the base of the food web and the trophic position of sculpin were not impacted by geoduck aquaculture. The study has important implications for geoduck aquaculture management and will inform regulatory decisions related to shellfish aquaculture policy.

Washington↗

USGS2023

Remotely sensed short-crested breaking waves in a laboratory directional wave basin

Short-crested breaking waves that result from directionally spread wave conditions dissipate energy and generate turbulence within the surf zone, altering sediment transport processes, wave runup, and forces on structures. Additionally, vertical vorticity generated near crest ends during breaking, which depends on the gradient in wave height along a crest, may enhance nearshore dispersion of pollutants, nutrients, and larvae. Although directionally spread irregular wave fields are ubiquitous on ocean and large lake coastlines, the dependence of short-crested breaking wave characteristics (including the along-crest length and number of crest ends) on offshore wave conditions is not well established. To assess this relationship, laboratory experiments with alongshore-uniform barred bathymetry were performed in a large-scale directional wave basin. A three-dimensional scanning lidar, trinocular camera stereo processing methods, and in situ measurements were used to study short-crested wave field breaking characteristics in the laboratory, yielding a dataset with dense spatio-temporal coverage relative to prior laboratory or field measurements. Wave height estimates are similar for remotely sensed and in situ observations, except in the outer surf zone where plunging breaking occurred. Directional wave properties estimated with an array of in situ or remotely sensed sea-surface elevation estimates are similar and yield smaller directional spreads than single-point colocated pressure and velocity based in situ estimates when waves are less directionally spread. Using a breaking crest identification procedure combining visible imagery and stereo sea-surface elevation, we find that the average along-crest length of breaking waves decreases and the average number of crest ends increases with increasing directional spread. Relative to observations, a parameterized relationship between directional spread and crest characteristics based on theory for non-breaking, refracting waves generally over-estimates breaking crest lengths and is similar to or underestimates the total number of crest ends observed in the surf zone. The wave-field-dependent breaking-wave characteristics examined in the laboratory with remote sensing techniques can inform future investigations of depth-limited short-crested wave breaking and resulting surfzone eddy processes.

Coastal Engineering↗

USGS2015

Machine learning for predicting soil classes in three semi-arid landscapes

Mapping the spatial distribution of soil taxonomic classes is important for informing soil use and management decisions. Digital soil mapping (DSM) can quantitatively predict the spatial distribution of soil taxonomic classes. Key components of DSM are the method and the set of environmental covariates used to predict soil classes. Machine learning is a general term for a broad set of statistical modeling techniques. Many different machine learning models have been applied in the literature and there are different approaches for selecting covariates for DSM. However, there is little guidance as to which, if any, machine learning model and covariate set might be optimal for predicting soil classes across different landscapes. Our objective was to compare multiple machine learning models and covariate sets for predicting soil taxonomic classes at three geographically distinct areas in the semi-arid western United States of America (southern New Mexico, southwestern Utah, and northeastern Wyoming). All three areas were the focus of digital soil mapping studies. Sampling sites at each study area were selected using conditioned Latin hypercube sampling (cLHS). We compared models that had been used in other DSM studies, including clustering algorithms, discriminant analysis, multinomial logistic regression, neural networks, tree based methods, and support vector machine classifiers. Tested machine learning models were divided into three groups based on model complexity: simple, moderate, and complex. We also compared environmental covariates derived from digital elevation models and Landsat imagery that were divided into three different sets: 1) covariates selected a priori by soil scientists familiar with each area and used as input into cLHS, 2) the covariates in set 1 plus 113 additional covariates, and 3) covariates selected using recursive feature elimination. Overall, complex models were consistently more accurate than simple or moderately complex models. Random forests (RF) using covariates selected via recursive feature elimination was consistently the most accurate, or was among the most accurate, classifiers between study areas and between covariate sets within each study area. We recommend that for soil taxonomic class prediction, complex models and covariates selected by recursive feature elimination be used. Overall classification accuracy in each study area was largely dependent upon the number of soil taxonomic classes and the frequency distribution of pedon observations between taxonomic classes. Individual subgroup class accuracy was generally dependent upon the number of soil pedon observations in each taxonomic class. The number of soil classes is related to the inherent variability of a given area. The imbalance of soil pedon observations between classes is likely related to cLHS. Imbalanced frequency distributions of soil pedon observations between classes must be addressed to improve model accuracy. Solutions include increasing the number of soil pedon observations in classes with few observations or decreasing the number of classes. Spatial predictions using the most accurate models generally agree with expected soil–landscape relationships. Spatial prediction uncertainty was lowest in areas of relatively low relief for each study area.

New Mexico, Utah, Wyoming↗

USGS2002

Investigating landslides caused by earthquakes - A historical review

Post-earthquake field investigations of landslide occurrence have provided a basis for understanding, evaluating, and mapping the hazard and risk associated with earthquake-induced landslides. This paper traces the historical development of knowledge derived from these investigations. Before 1783, historical accounts of the occurrence of landslides in earthquake are typically so incomplete and vague that conclusions based on these accounts are of limited usefulness. For example, the number of landslides triggered by a given event is almost always greatly underestimated. The first formal, scientific post-earthquake investigation that included systematic documentation of the landslides was undertaken in the Calabria region of Italy after the 1783 earthquake swarm. From then until the mid-twentieth century, the best information on earthquake-induced landslides came from a succession of post-earthquake investigations largely carried out by formal commissions that undertook extensive ground-based field studies. Beginning in the mid-twentieth century, when the use of aerial photography became widespread, comprehensive inventories of landslide occurrence have been made for several earthquakes in the United States, Peru, Guatemala, Italy, El Salvador, Japan, and Taiwan. Techniques have also been developed for performing "retrospective" analyses years or decades after an earthquake that attempt to reconstruct the distribution of landslides triggered by the event. The additional use of Geographic Information System (GIS) processing and digital mapping since about 1989 has greatly facilitated the level of analysis that can applied to mapped distributions of landslides. Beginning in 1984, synthesis of worldwide and national data on earthquake-induced landslides have defined their general characteristics and relations between their occurrence and various geologic and seismic parameters. However, the number of comprehensive post-earthquake studies of landslides is still relatively small, and one of the most pressing needs in this area of research is for the complete documentation of landslides triggered by many more earthquakes in a wider variety of environments.

Surveys in Geophysics↗

USGS1996

Analysis of fractures intersecting Kahi Puka Well 1 and its relation to the growth of the island of Hawaii

As part of the Hawaii Scientific Drilling Project, Kahi Puka Well 1 penetrated about 275 m of Mauna Loa basalts overlying a sequence of Mauna Kea flow units as it was drilled and cored to a total depth of 1053 m below land surface. A borehole televiewer (BHTV) was run in most of the well in successive stages prior to casing in order to obtain magnetically oriented acoustic images of the borehole wall. A total of 283 individual fractures were identified from this log and characterized in terms of strike and dip. These data are divided into three vertical sections based upon age and volcanic source, and lower hemisphere stereographic plots identify two predominant, subparallel fracture subsets common to each section. Assuming that most of the steeply dipping fractures observed in the BHTV log are tensile features generated within basalt flows during deposition and cooling, this fracture information can be combined with models of the evolution of the island of Hawaii to investigate the depositional history of these Mauna Loa and Mauna Kea basalts over the past 400 kyr. The directions of high-angle fractures appear to be generally parallel to topography or to the coastline at the time of deposition, as is supported by surface mapping of modern flows. Consequently, an overall counterclockwise rotation of about 75?? in the strike of these fractures from the bottom to the top of the well represents a systematic change in depositional slope direction over time. We attribute the observed rotation in the orientations of the two predominant fracture subsets over the past 400 kyr to changes in the configurations of volcanic sources during shield building and to the structural interference of adjacent volcanoes that produces shifts in topographic patterns.

Journal of Geophysical Research B: Solid Earth↗

USGS2013

Environmental correlates of upstream migration of yellow-phase American eels in the Potomac River drainage

Assessing the relationships between upstream migration and environmental variables is important to understanding the ecology of yellow-phase American Eels Anguilla rostrata . During an American Eel migration study within the lower Shenandoah River (Potomac River drainage), we counted and measured American Eels at the Millville Dam eel ladder for three periods: 14 May–23 July 2004, 7–30 September 2004, and 1 June–31 July 2005. Using generalized estimating equations, we modeled each time series of daily American Eel counts by fitting time-varying environmental covariates of lunar illumination (LI), river discharge (RD), and water temperature (WT), including 1-d and 2-d lags of each covariate. Information-theoretic approaches were used for model selection and inference. A total of 4,847 American Eels (19–74 cm total length) used the ladder during the three periods, including 2,622 individuals during a 2-d span following a hurricane-induced peak in river discharge. Additive-effects models of RD + WT, a 2-d lag of LI + RD, and LI + RD were supported for the three periods, respectively. Parameter estimates were positive for river discharge for each time period, negative for lunar illumination for two periods and positive for water temperature during one period. Additive-effects models supported synergistic influences of environmental variables on the upstream migration of yellow-phase American Eels, although river discharge was consistently supported as an influential correlate of upstream migration.

Maryland↗

USGS2008

Cost-effective management alternatives for Snake river chinook salmon: A biological-economic synthesis

The mandate to increase endangered salmon populations in the Columbia River Basin of North America has created a complex, controversial resource-management issue. We constructed an integrated assessment model as a tool for analyzing biological-economic trade-offs in recovery of Snake River spring- and summer-run chinook salmon (Oncorhynchus tshawytscha). We merged 3 frameworks: a salmon-passage model to predict migration and survival of smolts; an age-structured matrix model to predict long-term population growth rates of salmon stocks; and a cost-effectiveness analysis to determine a set of least-cost management alternatives for achieving particular population growth rates. We assessed 6 individual salmon-management measures and 76 management alternatives composed of one or more measures. To reflect uncertainty, results were derived for different assumptions of effectiveness of smolt transport around dams. Removal of an estuarine predator, the Caspian Tern (Sterna caspia), was cost-effective and generally increased long-term population growth rates regardless of transport effectiveness. Elimination of adult salmon harvest had a similar effect over a range of its cost estimates. The specific management alternatives in the cost-effective set depended on assumptions about transport effectiveness. On the basis of recent estimates of smolt transport effectiveness, alternatives that discontinued transportation or breached dams were prevalent in the cost-effective set, whereas alternatives that maximized transportation dominated if transport effectiveness was relatively high. More generally, the analysis eliminated 80-90% of management alternatives from the cost-effective set. Application of our results to salmon management is limited by data availability and model assumptions, but these limitations can help guide research that addresses critical uncertainties and information. Our results thus demonstrate that linking biology and economics through integrated models can provide valuable tools for science-based policy and management.

Conservation Biology↗