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Results for “Ecology Indicators”

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USGS2017

Direct and indirect controls on organic matter decomposition in four coastal wetland communities along a landscape salinity gradient

Coastal wetlands store more carbon than most ecosystems globally. As sea level rises, changes in flooding and salinity will potentially impact ecological functions, such as organic matter decomposition, that influence carbon storage. However, little is known about the mechanisms that control organic matter loss in coastal wetlands at the landscape scale. As sea level rises, how will the shift from fresh to salt-tolerant plant communities impact organic matter decomposition? Do long-term, plant-mediated, effects of sea-level rise differ from direct effects of elevated salinity and flooding? We identified internal and external factors that regulated indirect and direct pathways of sea-level rise impacts, respectively, along a landscape-scale salinity gradient that incorporated changes in wetland type (fresh, oligohaline, mesohaline and polyhaline marshes). We found that indirect and direct impacts of sea-level rise had opposing effects on organic matter decomposition. Salinity had an indirect effect on litter decomposition that was mediated through litter quality. Despite significant variation in environmental conditions along the landscape gradient, the best predictors of above- and below-ground litter decomposition were internal drivers, initial litter nitrogen content and initial litter lignin content respectively. Litter decay constants were greatest in the oligohaline marsh and declined with increasing salinity, and the fraction of litter remaining (asymptote) was greatest in the mesohaline marsh. In contrast, direct effects of salinity and flooding were positive. External drivers, salinity and flooding, stimulated cellulytic activity, which was highest in the polyhaline marsh. Synthesis . Our results indicate that as sea level rises, initial direct effects of salinity will stimulate decay of labile carbon, but over time as plant communities shift from fresh to polyhaline marsh, litter decay will decline, yielding greater potential for long-term carbon storage. These findings highlight the importance of quantifying carbon loss at multiple temporal scales, not only in coastal wetlands but also in other ecosystems where plant-mediated responses to climate change will have significant impacts on carbon cycling.

Journal of Ecology↗

USGS2013

Animal migration and risk of spread of viral infections

The potential contribution of migration towards the spread of disease is as varied as the ecology of the pathogens themselves and their host populations. This chapter outlines multiple examples of viral diseases in animal populations and their mechanisms of viral spread. Many species of insects, mammals, fish, and birds exhibit migratory behavior and have the potential to disperse diseases over long distances. The majority of studies available on viral zoonoses have focused on birds and bats, due to their highly migratory life histories. A number of studies have reported evidence of changes in the timing of animal migrations in response to climate change. The majority indicate an advancement of spring migration, with few or inconclusive results for fall migration. Predicting the combined effects of climate change on migratory patterns of host species and epidemiology of viral pathogens is complex and not fully realistic.

Book chapter↗

USGS2026

Who needs closure? Estimating abundance with a Markovian availability model for geographically open removal sampling

Removal sampling is an important method for estimating abundance, but nearly all removal models assume closure during sampling. Yet, closure may be difficult to assume, evaluate, or enforce in many settings. To address situations where populations are geographically open between each removal sample, we incorporated a Markovian availability process into an N-mixture model framework. This model relates local abundance available for sampling to a superpopulation through recruitment of new individuals to the sampling area. To test the model, we (1) conducted parameter identifiability analysis, (2) fit the model to removal data generated from a random walk movement model, and (3) analyzed a case study of empirical removal data. Parameters were increasingly identifiable as capture probability exceeded 0.25 and removal samples increased from 3 to 6. Abundance estimates were unbiased when parameters were identifiable, except for scenarios that simulated a behavioral response to sampling. For our case study, the model estimated negligible recruitment for benthic-oriented fishes, indicating closure, but we found evidence against closure for juvenile Chinook salmon, a highly mobile species. Our removal model allows researchers to formally test closure assumptions, to estimate the degree of closure, and to estimate abundance without bias when closure is violated.

California↗

USGS2021

Activity patterns of anadromous fish below a tide gate: Observations from high‐resolution imaging sonar

The construction of dams and tide gates on waterways has altered the physical structure of many coastal, estuarine, and freshwater systems. These changes have come at a cost to fish populations, most notably diadromous species, which rely on connectivity between marine and freshwater systems. These anthropogenic structures can have direct effects on migrating fish, such as blocking fish passage, or have more subtle effects, such as changing movement patterns. This study used a high‐resolution Adaptive Resolution Imaging Sonar to examine the behavior of Striped Bass Morone saxatilis , a large coastal predator, and Alewife Alosa pseudoharengus and Blueback Herring Alosa aestivalis (collectively known as river herring), which are forage fish, below a tide gate structure on the Herring River in Wellfleet, Massachusetts, during the river herring spring spawning run. Striped Bass were persistently present downstream of the tide gate and exhibited strong diurnal and tidal patterns. Activity of Striped Bass was highest at night and during ebb tides. During peak outflow periods, river herring were observed milling downstream of the dam in a scour pool, indicating delayed upstream passage. River herring upstream migration was primarily associated with daytime and during incoming tides. Downstream‐migrating river herring were primarily observed during nighttime hours. While it was documented that the tide gates provided a physical impediment to migration, their effect on predator behavior could pose an additional challenge to migrating river herring, further complicating their recovery efforts. Due to the prevalence of obstructed waterways, studying the behavior of fish around anthropogenic structures is important in understanding the full range of impacts that these systems have under varying ecological conditions and on ecological relationships.

Massachusetts↗

USGS1987

A survey of Pb, Cu, Zn, Cd, Cr, As, and Se in earthworms and soil from diverse sites

Earthworms and soils were collected from 20 diverse sites in Maryland, Pennsylvania, and Virginia, and were analyzed for Pb, Cu, Zn, Cd, Cr, As, and Se. Correlation coefficients relating concentrations of the elements in earthworms to concentrations in soil were low (−0.20< r <+0.57). Species differences and ecological variables contributed to the variability in concentrations of these elements in earthworms. The maximum concentrations of Pb (2100 ppm), Zn (1600 ppm), Cd (23 ppm) and Se (7.6 ppm) detected in earthworms were in the range reported to be toxic to animals fed diets containing these elements; however, even in the absence of any environmental contamination, some species of earthworms may contain high concentrations of Pb, Zn, and Se. Earthworms of the genus Eisenoides , for example, were exceptional in their ability to concentrate Pb. When earthworms are used as indicators of environmental contamination, it is important to identify the species, to report the soil characteristics, and to collect similar earthworms from very similar but uncontaminated soil.

Environmental Monitoring and Assessment↗

USGS2024

Tire-derived contaminants 6PPD and 6PPD-Q: Analysis, sample handling, and reconnaissance of United States stream exposures

The environmental ubiquity of tire and road wear particles (TRWP) underscores the need to understand the occurrence, persistence, and environmental effects of tire-related chemicals in aquatic ecosystems. One such chemical is 6PPD-quinone (6PPD-Q), a transformation product of the tire antioxidant 6PPD. In urban stormwater runoff 6PPD-Q can exceed acute toxicity thresholds for several salmonid species and is being implicated in significant coho salmon losses in the Pacific Northwest. There is a critical need to understand the prevalence of 6PPD-Q across watersheds to identify habitats heavily affected by TRWPs. We conducted a reconnaissance of 6PPD and 6PPD-Q in surface waters across the United States from sites (N = 94) with varying land use (urban, agricultural, and forested) and streamflow to better understand stream exposures. A rapid, low-volume direct-inject, liquid chromatography mass spectrometry method was developed for the quantitation of 6PPD-Q and screening for 6PPD. Laboratory holding times, bottle material, headspace, and filter materials were investigated to inform best practices for 6PPD-Q sampling and analysis. Glass bottles with PTFE-lined caps minimized sorption and borosilicate glass fiber filters provided the highest recovery. 6PPD-Q was stable for at least 5 months in pure laboratory solutions and for 75 days at 5 °C with minimal headspace in the investigated surface water and stormwaters. Results also indicated samples can be frozen to extend holding times. 6PPD was not detected in any of the 526 analyzed samples and there were no detections of 6PPD-Q at agricultural or forested sites. 6PPD-Q was frequently detected in stormwater (57%, N = 90) and from urban impacted sites (45%, N = 276) with concentrations ranging from 0.002 to 0.29 μg/L. The highest concentrations, above the lethal level for coho salmon, occurred during stormwater runoff events. This highlights the importance of capturing episodic runoff events in urban areas near ecologically relevant habitat or nursery grounds for sensitive species.

Chemosphere↗

USGS2023

HABs and HAB nots: Dynamics of phytoplankton blooms across similar oligotrophic reservoirs

Increasing frequency and intensity of cyanobacterial Harmful Algal Blooms (HABs) threaten human and aquatic ecosystem health. Improving our understanding of HABs across a range of systems will be critical to understanding and potentially minimizing risk, especially where HABs are occurring in less productive and less studied waterbodies. Here, the characteristics and annual dynamics of phytoplankton communities were examined, focusing on the timing, magnitude, and predictability of cyanobacterial blooms in five multi-purpose flood-control reservoirs from the Willamette Basin, Oregon, USA. A high similarity in phytoplankton composition and consistency in the timing of cyanobacterial dominance was hypothesized to occur across these oligotrophic reservoirs. However, periods of dominance by potentially HABs producing genera were inconsistent both in their timing and abundances among reservoirs and across years within each reservoir. The lack of regional predictability indicates the importance of local drivers in the formation, intensity, and composition of phytoplankton blooms. These findings have important implications for reservoir management and safeguarding freshwater drinking sources, as not all reservoirs appear to experience cyanobacterial blooms at the same time, demonstrating non-concurrent risks of HABs.

Limnologica - Ecology and Management of Inland Wat↗

USGS1997

Growth responses of young Douglas-fir and tanoak 11 years after various levels of hardwood removal and understory suppression in southwestern Oregon, USA

At two sites in southwestern Oregon, height, diameter, and crown width of young Douglas-fir ( Pseudotsuga menziesii ) and sprout-origin tanoak ( Lithocarpus densiflorus ) were measured 1–11 years after reducing the density of a 2-year-old tanoak stand to 0%, 25%, 50%, and 100% of its initial cover. Some plots also included suppression of understory vegetation. Tanoak cover developed linearly with time, with steepness of the growth trajectory increasing at a diminishing rate with increasing percentage of initial tanoak cover. Fifth-year cover of understory vegetation declined linearly with increasing percentage of initial tanoak cover ( R 2 = 0.29). Survival of Douglas-fir (96–100%) differed little among initial abundances of tanoak, while growth trajectories for its size became increasingly exponential with decreasing percentage of initial tanoak cover. Eleventh-year heights of Douglas-fir were similar for 0%, 25%, and 50% of initial tanoak cover; however, diameter increased linearly with decreasing percentage of initial tanoak cover ( R 2 = 0.73), and the slope of the relationship steepened with understory suppression. Our results indicate that young stands exhibiting a wide range of stand compositions and productivities can be established by early manipulations of tanoak and understory abundance. Complete removal of tanoak plus understory suppression are necessary to maximize Douglas-fir growth, while productive, mixed stands can be achieved by removing 50% or more of tanoak cover.

Forest Ecology and Management↗

USGS2026

An Antarctic ecosystem value index to quantify ecological value across trophic levels and over time

The Southern Ocean around Antarctica is one of the fastest changing regions on the planet and an emerging resource frontier for fisheries. Here, we present the Antarctic Ecosystem Value Index created by merging ecosystem information across food web trophic levels, from phytoplankton to fish and penguins, to quantify the ecological value of marine areas around the Antarctic continent. We find that coastal polynyas - areas of reduced sea-ice - have Index values 31–72% higher than surrounding areas, suggesting that these areas are biologically valuable hot spots for a number of ice-dependent Antarctic Species. Using output from an Earth system model to generate future projections of the Index, we find that high-value locations, often within polynyas, are likely to continue to be valuable throughout the 21st century despite environmental changes. The Antarctic Ecosystem Value Index indicates that penguins lose importance as their habitat becomes increasingly unsuitable, so protecting high-value habitat areas may be critical for these species. This study also shows that while many high-value Index areas are within existing or proposed Marine Protected Areas, there are several opportunities for adopting additional protection, particularly in East Antarctica and the Amundsen Sea.

Nature Communications↗

USGS2023

A seasonally ice-free Arctic Ocean during the Last Interglacial

The extent and seasonality of Arctic sea ice during the Last Interglacial (129,000 to 115,000 years before present) is poorly known. Sediment-based reconstructions have suggested extensive ice cover in summer, while climate model outputs indicate year-round conditions in the Arctic Ocean ranging from ice free to fully ice covered. Here we use microfossil records from across the central Arctic Ocean to show that sea-ice extent was substantially reduced and summers were probably ice free. The evidence comes from high abundances of the subpolar planktic foraminifera Turborotalita quinqueloba in five newly analysed cores. The northern occurrence of this species is incompatible with perennial sea ice, which would be associated with a thick, low-salinity surface water. Instead , T. quinqueloba ’s ecological preference implies largely ice-free surface waters with seasonally elevated levels of primary productivity. In the modern ocean, this species thrives in the Fram Strait–Barents Sea ‘Arctic–Atlantic gateway’ region, implying that the necessary Atlantic Ocean-sourced water masses shoaled towards the surface during the Last Interglacial. This process reflects the ongoing Atlantification of the Arctic Ocean, currently restricted to the Eurasian Basin. Our results establish the Last Interglacial as a prime analogue for studying a seasonally ice-free Arctic Ocean, expected to occur this century.

Nature Geoscience↗

USGS2017

The greenscape shapes surfing of resource waves in a large migratory herbivore

The Green Wave Hypothesis posits that herbivore migration manifests in response to waves of spring green-up (i.e. green-wave surfing). Nonetheless, empirical support for the Green Wave Hypothesis is mixed, and a framework for understanding variation in surfing is lacking. In a population of migratory mule deer ( Odocoileus hemionus ), 31% surfed plant phenology in spring as well as a theoretically perfect surfer, and 98% surfed better than random. Green-wave surfing varied among individuals and was unrelated to age or energetic state. Instead, the greenscape, which we define as the order, rate and duration of green-up along migratory routes, was the primary factor influencing surfing. Our results indicate that migratory routes are more than a link between seasonal ranges, and they provide an important, but often overlooked, foraging habitat. In addition, the spatiotemporal configuration of forage resources that propagate along migratory routes shape animal movement and presumably, energy gains during migration.

Wyoming↗

USGS2013

Early indicators of change: divergent climate envelopes between tree life stages imply range shifts in the western United States

Aim To determine if differences in climate envelopes for six coniferous tree species and two life stages (trees and seedlings) suggest a potential for species range contractions, expansions or shifts in response to climate change and if these patterns differ between subalpine (i.e. cool-climate) and montane (i.e. warm-climate) species. Location The dry domain of the western United States. Methods Using data from the Forest Inventory and Analysis National Program, we quantified the relationship between probability of occurrence and climate for adults and seedlings of each species with a Bayesian logistic regression. Assuming that distributional differences between life stages highlight shifting regeneration patterns relative to adult trees, we assessed differences between seedlings and adult trees based on predicted probabilities of occurrence and climate envelope boundaries. Results Differences between occurrence probabilities for seedlings and adults were greatest for montane, as opposed to subalpine, species and along range margins, especially in the southern and western portions of the study area. Climate envelope boundaries of seedlings differed from adult trees most frequently in montane species and often suggested range contractions or range shifts, as opposed to range expansion. Main conclusions Our results indicated that climate-induced contractions and shifts in seedling distribution in response to recent change are already under way and are particularly severe in montane tree species. While adult trees may persist for hundreds of years without significant regeneration, tree species ranges will eventually contract where tree regeneration fails.

Colorado;Idaho;Montana;Utah;Wyoming↗

USGS2019

Life-history variation of two inland salmonids revealed through otolith microchemistry analysis

Increasingly, otolith microchemistry analysis is used as a tool to trace fish migrations, especially migrations of diadromous fishes. Yet, few studies have used otolith microchemistry to trace migrations in small inland watersheds, leaving major knowledge gaps in our understanding of inland fish spatial ecology. Here, we evaluate the use of tributary habitat for spawning and describe and compare fluvial brown trout ( Salmo trutta ) and rainbow trout ( Oncorhynchus mykiss ) natal origin distribution, time spent in natal streams, and spawning site fidelity. 63% of rainbow trout and 57% of brown trout migrated after hatching. Brown trout showed greater variation in time spent in natal tributaries, suggesting that individuals are temporally distributing risk among offspring. By contrast, rainbow trout showed greater variation in natal origin, suggesting that individuals are spatially distributing risk among offspring. Our results indicate there is high inter- and intraspecific migration variation in inland salmonid populations, which may be linked to access to a mosaic of spawning and rearing habitat types.

Colorado, Wyoming↗

USGS2012

Pacific salmon (Oncorhynchus spp.) runs and consumer fitness: growth and energy storage in stream-dwelling salmonids increase with salmon spawner density

We examined how marine-derived nutrients (MDN), in the form of spawning Pacific salmon, influenced the nutritional status and δ 15 N of stream-dwelling fishes. We sampled juvenile coho salmon ( Oncorhynchus kisutch ) and Dolly Varden ( Salvelinus malma ) during spring and fall from 11 south-central Alaskan streams that ranged widely in spawning salmon biomass (0.1–4.7 kg·m –2 ). Growth rate (as indexed by RNA–DNA ratios), energy density, and δ 15 N enrichment in spring-sampled fishes increased with spawner biomass, indicating the persistence of spawner effects more than 6 months after salmon spawning. Point estimates suggest that spawner effects on nutrition were substantially greater for coho salmon than Dolly Varden (268% and 175% greater for growth and energy, respectively), indicating that both species benefitted physiologically, but that juvenile coho salmon accrued more benefits than Dolly Varden. Although the data were less conclusive for fall- than spring-sampled fish, they do suggest spawner effects were also generally positive during fall, soon after salmon spawned. In a follow-up analysis where growth rate and energy density were modeled as a function of δ 15 N enrichment, results suggested that both increased with MDN assimilation, especially in juvenile coho salmon. Our results support the importance of salmon runs to the nutritional ecology of stream-dwelling fishes.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2014

Disease and predation: Sorting out causes of a bighorn sheep ( Ovis canadensis ) decline

Estimating survival and documenting causes and timing of mortality events in neonate bighorn sheep ( Ovis canadensis ) improves understanding of population ecology and factors influencing recruitment. During 2010–2012, we captured and radiocollared 74 neonates in the Black Hills, South Dakota, of which 95% (70) died before 52 weeks of age. Pneumonia (36%) was the leading cause of mortality followed by predation (30%). We used known fate analysis in Program MARK to estimate weekly survival rates and investigate the influence of intrinsic variables on 52-week survival. Model {S 1 wk, 2–8 wks, >8 wks } had the lowest AIC c (Akaike’s Information Criterion corrected for small sample size) value, indicating that age (3-stage age-interval: 1 week, 2–8 weeks, and >8 weeks) best explained survival. Weekly survival estimates for 1 week, 2–8 weeks, and >8 weeks were 0.81 (95% CI = 0.70–0.88), 0.86 (95% CI = 0.81–0.90), and 0.94 (95% CI = 0.91–0.96), respectively. Overall probability of surviving 52 weeks was 0.02 (95% CI = 0.01–0.07). Of 70 documented mortalities, 21% occurred during the first week, 55% during weeks 2–8, and 23% occurred >8 weeks of age. We found pneumonia and predation were temporally heterogeneous with lambs most susceptible to predation during the first 2–3 weeks of life, while the greatest risk from pneumonia occurred from weeks 4–8. Our results indicated pneumonia was the major factor limiting recruitment followed by predation. Mortality from predation may have been partly compensatory to pneumonia and its effects were less pronounced as alternative prey became available. Given the high rates of pneumonia-caused mortality we observed, and the apparent lack of pneumonia-causing pathogens in bighorn populations in the western Black Hills, management activities should be geared towards eliminating contact between diseased and healthy populations.

South Dakota↗

USGS1996

Differentiating climatic and successional influences on long-term development of a marsh

Comparison of long—term records of local wetland vegetation dynamics with regional, climate—forced terrestrial vegetation changes can be used to differentiate the rates and effects of autogenic successional processes and allogenic environmental change on wetland vegetation dynamics. We studied Holocene plant macrofossil and pollen sequences from Portage Marsh, a shallow, 18—ha marsh in northeastern Indiana. Between 10 000 and 5700 yr BP the basin was occupied by a shallow, open lake, while upland vegetation consisted of mesic forests of Pinus, Quercus, Ulmus, and Carya. At 5700 yr BP the open lake was replaced rapidly by a shallow marsh, while simultaneously Quercus savanna developed on the surrounding uplands. The marsh was characterized by periodic drawdowns, and the uplands by periodic fires. Species composition of the marsh underwent further changes between 3000 and 2000 yr BP. Upland pollen spectra at Portage Marsh and other sites in the region shifted towards more mesic vegetation during that period. The consistency and temporal correspondence between the changes in upland vegetation and marsh vegetation indicate that the major vegetational changes in the marsh during the Holocene resulted from hydrologic changes forced by regional climate change. Progressive shallowing of the basin by autogenic accumulation of organic sediment constrained vegetational responses to climate change but did not serve as the direct mechanism of change.

Ecology↗

USGS2023

Effects of environment and metacommunity delineation on multiple dimensions of stream fish beta diversity

Introduction: Beta diversity represents changes in community composition among locations across a landscape. While the effects of human activities on beta diversity are becoming clearer, few studies have considered human effects on the three dimensions of beta diversity: taxonomic, functional, and phylogenetic. Including anthropogenic factors and multiple dimensions of biodiversity may explain additional variation in stream fish beta diversity, providing new insight into how metacommunities are structured within different spatial delineations. Methods: In this study, we used a 350 site stream fish abundance dataset from South Carolina, United States to quantify beta diversity explainable by spatial, natural environmental, and anthropogenic variables. We investigated three spatial delineations: (1) a single whole-state metacommunity delineated by political boundaries, (2) two metacommunities delineated by a natural geomorphic break separating uplands from lowlands, and (3) four metacommunities delineated by natural watershed boundaries. Within each metacommunity we calculated taxonomic, functional, and phylogenetic beta diversity and used variation partitioning to quantify spatial, natural environmental, and anthropogenic contributions to variations in beta diversity. Results: We explained 25–81% of the variation in stream fish beta diversity. The importance of these three factors in structuring metacommunities differed among the diversity dimensions, providing complementary perspectives on the processes shaping beta diversity in fish communities. The effect of spatial, natural environmental, and anthropogenic factors varied among the spatial delineations, which indicate conclusions drawn from variation partitioning may depend on the spatial delineation chosen by researchers. Discussion: Our study highlights the importance of considering human effects on metacommunity structure, quantifying multiple dimensions of beta diversity, and careful consideration of user-defined metacommunity boundaries in beta diversity analyses.

South Carolina↗

USGS2016

Increased prevalence of antibiotic-resistant E. coli in gulls sampled in southcentral Alaska is associated with urban environments

Background Antibiotic-resistant bacteria pose challenges to healthcare delivery systems globally; however, limited information is available regarding the prevalence and spread of such bacteria in the environment. The aim of this study was to compare the prevalence of antibiotic-resistant bacteria in large-bodied gulls ( Larus spp.) at urban and remote locations in Southcentral Alaska to gain inference into the association between antibiotic resistance in wildlife and anthropogenically influenced habitats. Methods Escherichia coli was cultured ( n =115 isolates) from fecal samples of gulls (n=160) collected from a remote location, Middleton Island, and a more urban setting on the Kenai Peninsula. Results Screening of E. coli from fecal samples collected from glaucous-winged gulls ( Larus glaucescens ) at Middleton Island revealed 8% of isolates were resistant to one or more antibiotics and 2% of the isolates were resistant to three or more antibiotics. In contrast, 55% of E. coli isolates derived from fecal samples collected from large-bodied gulls (i.e. glaucous, herring [ Larus argentatus ], and potentially hybrid gulls) on the Kenai Peninsula were resistant to one or more antibiotics and 22% were resistant to three or more antibiotics. In addition, total of 16% of the gull samples from locations on the Kenai Peninsula harbored extended-spectrum cephalosporin-resistant E. coli isolates (extended-spectrum beta-lactamases [ESBL] and plasmid-encoded AmpC [pAmpC]), in contrast to Middleton Island where no ESBL- or pAmpC-producing isolates were detected. Conclusion Our findings indicate that increased prevalence of antibiotic resistance is associated with urban environments in Southcentral Alaska and presumably influenced by anthropogenic impacts. Further investigation is warranted to assess how migratory birds may maintain and spread antimicrobial-resistant bacteria of relevance to human and animal health.

Alaska↗