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Estimating species richness and accumulation by modeling species occurrence and detectability

A statistical model is developed for estimating species richness and accumulation by formulating these community-level attributes as functions of model-based estimators of species occurrence while accounting for imperfect detection of individual species. The model requires a sampling protocol wherein repeated observations are made at a collection of sample locations selected to be representative of the community. This temporal replication provides the data needed to resolve the ambiguity between species absence and nondetection when species are unobserved at sample locations. Estimates of species richness and accumulation are computed for two communities, an avian community and a butterfly community. Our model-based estimates suggest that detection failures in many bird species were attributed to low rates of occurrence, as opposed to simply low rates of detection. We estimate that the avian community contains a substantial number of uncommon species and that species richness greatly exceeds the number of species actually observed in the sample. In fact, predictions of species accumulation suggest that even doubling the number of sample locations would not have revealed all of the species in the community. In contrast, our analysis of the butterfly community suggests that many species are relatively common and that the estimated richness of species in the community is nearly equal to the number of species actually detected in the sample. Our predictions of species accumulation suggest that the number of sample locations actually used in the butterfly survey could have been cut in half and the asymptotic richness of species still would have been attained. Our approach of developing occurrence-based summaries of communities while allowing for imperfect detection of species is broadly applicable and should prove useful in the design and analysis of surveys of biodiversity.

Ecology↗

Kelp forest ecosystems: Biodiversity, stability, resilience and future

Kelp forests are phyletically diverse, structurally complex and highly productive components of coldwater rocky marine coastlines. This paper reviews the conditions in which kelp forests develop globally and where, why and at what rate they become deforested. The ecology and long archaeological history of kelp forests are examined through case studies from southern California, the Aleutian Islands and the western North Atlantic, well-studied locations that represent the widest possible range in kelp forest biodiversity. Global distribution of kelp forests is physiologically constrained by light at high latitudes and by nutrients, warm temperatures and other macrophytes at low latitudes. Within mid-latitude belts (roughly 40–60° latitude in both hemispheres) well-developed kelp forests are most threatened by herbivory, usually from sea urchins. Overfishing and extirpation of highly valued vertebrate apex predators often triggered herbivore population increases, leading to widespread kelp deforestation. Such deforestations have the most profound and lasting impacts on species-depauperate systems, such as those in Alaska and the western North Atlantic. Globally urchin-induced deforestation has been increasing over the past 2–3 decades. Continued fishing down of coastal food webs has resulted in shifting harvesting targets from apex predators to their invertebrate prey, including kelp-grazing herbivores. The recent global expansion of sea urchin harvesting has led to the widespread extirpation of this herbivore, and kelp forests have returned in some locations but, for the first time, these forests are devoid of vertebrate apex predators. In the western North Atlantic, large predatory crabs have recently filled this void and they have become the new apex predator in this system. Similar shifts from fish- to crab-dominance may have occurred in coastal zones of the United Kingdom and Japan, where large predatory finfish were extirpated long ago. Three North American case studies of kelp forests were examined to determine their long history with humans and project the status of future kelp forests to the year 2025. Fishing impacts on kelp forest systems have been both profound and much longer in duration than previously thought. Archaeological data suggest that coastal peoples exploited kelp forest organisms for thousands of years, occasionally resulting in localized losses of apex predators, outbreaks of sea urchin populations and probably small-scale deforestation. Over the past two centuries, commercial exploitation for export led to the extirpation of sea urchin predators, such as the sea otter in the North Pacific and predatory fishes like the cod in the North Atlantic. The large-scale removal of predators for export markets increased sea urchin abundances and promoted the decline of kelp forests over vast areas. Despite southern California having one of the longest known associations with coastal kelp forests, widespread deforestation is rare. It is possible that functional redundancies among predators and herbivores make this most diverse system most stable. Such biodiverse kelp forests may also resist invasion from non-native species. In the species-depauperate western North Atlantic, introduced algal competitors carpet the benthos and threaten future kelp dominance. There, other non-native herbivores and predators have become established and dominant components of this system. Climate changes have had measurable impacts on kelp forest ecosystems and efforts to control the emission of greenhouse gasses should be a global priority. However, overfishing appears to be the greatest manageable threat to kelp forest ecosystems over the 2025 time horizon. Management should focus on minimizing fishing impacts and restoring populations of functionally important species in these systems.

Environmental Conservation↗

Species mixture effects and climate influence growth, recruitment and mortality in Interior West USA Populus tremuloides-conifer communities

Tree-species mixture effects (e.g. complementarity and facilitation) have been found to increase individual-tree productivity, lessen mortality and improve recruitment in forests worldwide. By promoting more efficient and complete resource use, mixture effects may also lessen individual-tree-level water stress, thus improving drought resistance. We investigated the influence of mixture effects on tree productivity, mortality and recruitment across broad compositional and moisture gradients in high-elevation Interior West US mixed-conifer communities, where Populus tremuloides (trembling aspen) is the major contributor to functional diversity. Our goal was to provide a more complete scientific foundation for managing these drought-prone, fire-excluded systems under an uncertain climate. We used landscape-scale national forest inventory data to examine mixture effects on P. tremuloides and the major associated conifer species, Pseudotsuga menziesii , Pinus contorta , Abies lasiocarpa and Picea engelmannii . Using generalized linear mixed modelling, we isolated the influences of P. tremuloides relative density and climate on tree-level (stems ≥ 12.7 cm DBH) growth, mortality and stand-level recruitment (presence/absence of new trees). Cold-season precipitation (PPT) and warm-season vapour pressure deficit (VPD) served to represent soil moisture supply and demand, respectively. Populus tremuloides growth declined as interspecific density increased. In contrast, Pinus contorta and A. lasiocarpa growth increased with P. tremuloides density. For all species except A. lasiocarpa and P. menziesii, growth increased under higher PPT and VPD. Populus tremuloides mortality increased under high VPD but not with interspecific relative density. We found limited evidence that A. lasiocarpa mortality decreased as P. tremuloides density increased. Populus tremuloides recruitment declined steeply above 25% interspecific relative density. We found a decline in conifer recruitment odds as P. tremuloides density increased, ranging from strong in P. contorta to insubstantial in P. engelmannii . Synthesis . Our findings have implications for sustaining mixed-conifer communities impacted by climate change and historical fire exclusion. Mixtures of P. tremuloides and conifers may improve conifer growth while adversely impacting P. tremuloides growth relative to pure stands. Higher conifer productivity combined with lower P. tremuloides recruitment at high conifer relative density may accelerate succession.

Journal of Ecology↗

Begging behavior as an honest signal of need and parent-offspring association during the post-fledging dependency period

Honest signaling mechanisms can function to appropriate care to hungry offspring and avoid misdirected care of unrelated offspring. Begging, the behavior by which offspring solicit food and parental care, may be an honest signaling mechanism for need, as well as association of parents and offspring. Roseate terns (Sterna dougallii) exhibit prolonged parental care during the post-breeding staging period, offering an ideal system in which to study begging as an honest signaling mechanism. We conducted focal sampling during two pre-migratory staging seasons (2014 and 2015) at Cape Cod National Seashore, MA to determine whether post-fledging tern begging behavior was an honest signal for need and parent-offspring association. Based on honest signaling theory, we expected begging behavior to be highest during times of high perceived need, and we expected to see a decrease in begging behavior as young terns became increasingly independent of the care-giving parent. Also, we predicted that young terns would be more likely to beg at parents than non-parents. We found that young roseate terns begged at their parents more often than non-parents; however, they did not always beg at parents. Model predictions of begging probability showed a linear relationship between begging and time of day and date of season, such that begging increased with time of day and decreased with date of season, respectively. Our results provide evidence for honest parent-offspring interactions and are inconsistent with parent-offspring conflict theory but suggest that begging may play a complex role in post-fledging parent-offspring interactions.

Massachusetts↗

Beneath the veil: Plant growth form influences the strength of species richness-productivity relationships in forests

Aim: Species richness has been observed to increase with productivity at large spatial scales, though the strength of this relationship varies among functional groups. In forests, canopy trees shade understorey plants, and for this reason we hypothesize that species richness of canopy trees will depend on macroclimate, while species richness of shorter growth forms will additionally be affected by shading from the canopy. In this study we test for differences in species richness-productivity relationships (SRPRs) among growth forms (canopy trees, shrubs, herbaceous species) in small forest plots. Location: We analysed 231 plots ranging from 34.0?? to 48.3?? N latitude and from 75.0?? to 124.2?? W longitude in the United States. Methods: We analysed data collected by the USDA Forest Inventory and Analysis program for plant species richness partitioned into different growth forms, in small plots. We used actual evapotranspiration as a macroclimatic estimate of regional productivity and calculated the area of light-blocking tissue in the immediate area surrounding plots for an estimate of the intensity of local shading. We estimated and compared SRPRs for different partitions of the species richness dataset using generalized linear models and we incorporated the possible indirect effects of shading using a structural equation model. Results: Canopy tree species richness increased strongly with regional productivity, while local shading primarily explained the variation in herbaceous plant richness. Shrub species richness was related to both regional productivity and local shading. Main conclusions: The relationship between total forest plant species richness and productivity at large scales belies strong effects of local interactions. Counter to the pattern for overall richness, we found that understorey herbaceous plant species richness does not respond to regional productivity gradients, and instead is strongly influenced by canopy density, while shrub species richness is under multivariate control. ?? 2009 Blackwell Publishing.

Global Ecology and Biogeography↗

Bats in a changing landscape: Linking occupancy and traits of a diverse montane bat community to fire regime

1. Wildfires are increasing in incidence and severity across the western US, leading to changes in forest structure and wildlife habitats. Knowledge of how species respond to fire-driven habitat changes in these landscapes is limited and generally disconnected from our understanding of adaptations that underpin responses to fire. 2. We aimed to identify relationships between fire regime, physiographic and forest structure variables, and occupancy and functional traits of a diverse bat community, to inform forest management in a fire-prone landscape. 3. We recorded bats acoustically at 83 sites (n = 249 recording nights) across the Plumas National Forest in the northern Sierra Nevada over 3 summers (2015-2017). We investigated relationships between fire regime, physiographic and forest structure and probability of bat occupancy for 9 species. We used fourth corner regression and RLQ analysis to identify ecomorphological traits (body mass; call frequency, bandwidth and duration; and open, edge or clutter (structurally complex vegetation) adapted foraging strategy) driving species-environment relationships across all 17 bat species. 4. Relationships between bat traits and fire regime were driven by adaptations to diverse forest structure. Bats adapted to foraging in open habitats and emitting longer duration and narrow bandwidth calls were associated with higher severity and more frequent fires, and bats adapted to foraging in a more cluttered environment were negatively associated with fire. Relationships between edge-adapted bat species and fire were driven by prey preference or habitat availability and configuration at a landscape scale. 5. Predicted increases in fire frequency and severity in the western US are likely to shift dominance in the bat community to species adapted to open environments and those able to exploit post-fire resource pulses (aquatic insects, beetles, snags). Managing for pyrodiversity within the western US is likely important for maintaining bat community diversity, as well as diversity of other biotic communities. Identifying trait-fire regime relationships will help forest managers develop appropriate management interventions and focus limited resources to provide for a broad range of species.

Ecology and Evolution↗

The influence of disturbance events on survival and dispersal rates of Florida box turtles

Disturbances have the potential to cause long-term effects to ecosystem structure and function, and they may affect individual species in different ways. Long-lived vertebrates such as turtles may be at risk from such events, inasmuch as their life histories preclude rapid recovery should extensive mortality occur. We applied capture–mark–recapture models to assess disturbance effects on a population of Florida box turtles ( Terrapene carolina bauri ) on Egmont Key, Florida, USA. Near the midpoint of the study, a series of physical disturbances affected the island, from salt water overwash associated with several tropical storms to extensive removal of nonindigenous vegetation. These disturbances allowed us to examine demographic responses of the turtle population and to determine if they affected dispersal throughout the island. Adult survival rates did not vary significantly either between sexes or among years of the study. Survival rates did not vary significantly between juvenile and adult turtles, or among years of the study. Furthermore, neither adult nor juvenile survival rates differed significantly between pre- and post-disturbance. However, dispersal rates varied significantly among the four major study sites, and dispersal rates were higher during the pre-disturbance sampling periods compared to post-disturbance. Our results suggest few long-term effects on the demography of the turtle population. Florida box turtles responded to tropical storms and vegetation control by moving to favorable habitats minimally affected by the disturbances and remaining there. As long as turtles and perhaps other long-lived vertebrates can disperse to non-disturbed habitat, and high levels of mortality do not occur in a population, a long life span may allow them to wait out the impact of disturbance with potentially little effect on long-term population processes.

Ecological Applications↗

Broad‐scale occurrence of a subsidized avian predator: reducing impacts of ravens on sage‐grouse and other sensitive prey

Expanding human enterprise across remote environments impacts numerous wildlife species. Anthropogenic resources provide subsidies for generalist predators that can lead to cascading effects on prey species at lower trophic levels. A fundamental challenge for applied ecologists is to disentangle natural and anthropogenic influences on species occurrence, and subsequently develop spatially explicit models to help inform management and conservation decisions. Using Bayesian hierarchical occupancy models, we mapped the broad‐scale occurrence of common ravens Corvus corax as a function of natural and anthropogenic landscape covariates using >15,000 point count surveys performed during 2007–2016 within the Great Basin region, USA. Raven abundance and distribution is substantially increasing across the American west due to unintended anthropogenic resource subsidies. Importantly, ravens prey on eggs and chicks of numerous species including greater sage‐grouse Centrocercus urophasianus , an indicator species whose decline is at the centre of national conservation strategies and land use policies.Anthropogenic factors that contributed to greater raven occurrence were: increased road density, presence of transmission lines, agricultural activity, and presence of roadside rest areas. Natural landscape characteristics included lower elevations with greener vegetation (NDVI), greater stream and habitat edge densities, and lower percentages of big sagebrush A. tridentata spp . Interactions between anthropogenic sources of nesting substrate and food subsidies suggested that raven occurrence increased multiplicatively when these resource subsidies co‐occurred. Overall, the average probability of raven occurrence estimated within sagebrush ecosystems of the study area was ~0.83. Synthesis and applications . We demonstrate how anthropogenic factors can be disentangled from natural effects when making spatially‐explicit predictions of subsidized predators occurring across expansive landscapes. This approach can guide management decisions where subsidized predators overlap sensitive prey habitats. For example, we identify areas where elevated raven occurrence coincides with breeding sage‐grouse concentration areas and appears to be largely driven by anthropogenic factors. Management applications could focus on reducing raven access to anthropogenic subsidies in these areas, while prioritizing habitat improvements for sage‐grouse elsewhere. Our approach is applicable to other species where widespread survey data are available.

Journal of Applied Ecology↗

Spatial modeling of biological soil crusts to support rangeland assessment and monitoring

Biological soil crusts are a diverse soil surface community, prevalent in semiarid regions, which function as ecosystem engineers and perform numerous important ecosystem services. Loss of crusts has been implicated as a factor leading to accelerated soil erosion and other forms of land degradation. To support assessment and monitoring efforts aimed at ensuring the sustainability of rangeland ecosystems, managers require spatially explicit information concerning potential cover and composition of biological soil crusts. We sampled low disturbance sites in Grand Staircase-Escalante National Monument (Utah, USA) to determine the feasibility of modeling the potential cover and composition of biological soil crusts in a large area. We used classification and regression trees to model cover of four crust types (light cyanobacterial, dark cyanobacterial, moss, lichen) and 1 cyanobacterial biomass proxy (chlorophyll a), based upon a parsimonious set of GIS (Geographic Information Systems) data layers (soil types, precipitation, and elevation). Soil type was consistently the best predictor, although elevation and precipitation were both invoked in the various models. Predicted and observed values for the dark cyanobacterial, moss, and lichen models corresponded moderately well (R 2 = 0.49, 0.64, 0.55, respectively). Cover of late successional crust elements (moss + lichen + dark cyanobacterial) was also successfully modeled (R2 = 0.64). We were less successful with models of light cyanobacterial cover (R2 = 0.22) and chlorophyll a (R2 = 0.09). We believe that our difficulty modeling chlorophyll a concentration is related to a severe drought and subsequent cyanobacterial mortality during the course of the study. These models provide the necessary reference conditions to facilitate the comparison between the actual cover and composition of biological soil crusts at a given site and their potential cover and composition condition so that sites in poor condition can be identified and management actions can be taken.

Rangeland Ecology and Management↗

Identifying conditions where reed canarygrass (Phalaris arundinacea) functions as a driver of forest loss in the Upper Mississippi River floodplain under different hydrological scenarios

Most of the world’s river-floodplain ecosystems are simultaneously undergoing modifications to their hydrological regimes and experiencing species invasions, making it unclear whether invasive species are the main drivers of ecosystem change or simply responding to changes in the hydrological regime. We simulated patterns of forest recruitment and succession in a 2500-ha portion of the Upper Mississippi River floodplain with and without removal of invasive Phalaris arundinacea and under two different future 100-year hydrological scenarios: a future maintaining the average flooding conditions of the past 40 years (random) and a future that projects an observed upward 40-year trend in flooding conditions forward (trending). By comparing scenarios that included Phalaris removal and ones that did not, we were able to identify the conditions where Phalaris was the main driver of forest loss vs. the conditions where hydrology was the main driver of forest loss. Areas where Phalaris was the main driver of forest loss had mean annual flood inundation durations that were similar to areas that did not lose forest cover (60–90 growing season days), while areas where flooding was the main driver of forest loss had longer mean inundation durations (102–124 growing season days). In comparison to the random hydrology scenario, the trending scenario produced a decrease in the area over which Phalaris was identified as the main driver of forest loss and an increase in the area over which flood inundation was identified as the main driver of forest loss. Thus, if the observed trends in flooding continue, our model projects an increase in the area over which eradicating Phalaris is unlikely to result in the maintenance of forest cover. We used the Resist-Accept-Direct (RAD) framework to discuss potential management options to resist changes and maintain forest cover where Phalaris is likely to be the main driver of forest loss and to accept or direct changes in areas where forest loss is likely driven by hydrological change.

Iowa, Minnesota, Wisconsin↗

Hydrophone placement yields high variability in detection of Epinephelus striatus calls at a spawning site.

Passive acoustic monitoring is a cost-effective, minimally invasive technology commonly used to study behavior and population dynamics of soniferous fish species. To understand the strengths and limitations of acoustic monitoring for this purpose at fish spawning aggregations (FSA) requires an assessment of the variability in aggregation-associated sounds (AAS) as a function of time, space, and proximity for spawning fishes of interest. Here, we evaluate temporal and spatial trends in the detection of AAS by Nassau Grouper ( Epinephelus striatus ) using an array of six hydrophones deployed across a large Nassau Grouper FSA at Little Cayman, Cayman Islands. We collected continuous data for nine days during a winter spawning season and subsequently used an automatic classifier to extract the embedded Nassau Grouper AAS. Using these data, we analyzed variability in spatiotemporal AAS detection rates across the array with a Bayesian mixed effects model. We found high variability in the detection of AAS across the spawning site, with positive correlations among neighboring hydrophone pairs trending toward negative correlations with distances exceeding 350 m. Indeed, temporal trends in AAS rates at the spawning site were approximately inverted at the two most distant hydrophones (~600 m). Across the hydrophone network, our model predicted strong positive effects of fish proximity, spawning behavior, and crepuscular periods on detected AAS. Our findings suggest hydrophone placement can strongly influence AAS detection rates and even basic temporal patterns in AAS across the spawning season. Given both the vagaries of movement and behavior of aggregating fish at spawning sites and the limits of AAS detection using standard monitoring tools, we suggest spawning site acoustic monitoring programs deploy hydrophone arrays of sufficient size to capture the site-wide trends in AAS rates if possible; this is particularly true if researchers hope to compare/contrast AAS rates between spawning sites or across seasons for the purpose of population assessment.

Ecological Applications↗

A water quality barometer for Chesapeake Bay: Assessing spatial and temporal patterns using long-term monitoring data

This paper develops a barometer that indexes water quality in the Chesapeake Bay and summarizes quality over spatial regions and temporal periods. The barometer has a basis in risk assessment and hydrology, and is a function of three different metrics of water quality relative to numerical criteria: relative frequency of criterion attainment; magnitude of deviation from a numerical criterion; and duration of criterion attainment. Metrics associated with these features are calculated at the station level, allowing flexibility for simultaneously evaluating multiple stressors, different designated uses, and physical characteristics of the water. The barometer score is then created as a geometric mean of the three metrics. The water quality barometer (WQB) station scores may be spatially aggregated to report habitat scores across a spectrum of spatial resolutions (e.g., management segment, tidal subsystem, or the whole tidal bay). Dissolved oxygen measurements in the Chesapeake Bay collected during summer seasons of 1985 to 2020 are used to evaluate water quality. The WQB score and its bootstrapped confidence interval are reported at the station, segment, tidal subsystem and whole tidal bay levels. Notably, water quality interpreted through application of the WQB with dissolved oxygen concentration data and averaged over the 29-year period of record is good (i.e. protects aquatic living resources) in tributaries such as the James River, Rappahannock River and others; but is not as good in areas such as the Upper Tributaries and the York River. Recent summaries indicate that while the water quality is improving in much of the bay and its tidal tributaries, however, there is an indication of decline in quality in the period 20182020, especially in the upper regions of the Bay. The barometer is designed around using the time series data produced by the Chesapeake Bay Programs annual monitoring strategy; the approach has application to other large water bodies with large scale monitoring programs with extended time series or for integrating information from environmental sensor systems.

Maryland, Virginia↗

Effects of nourishment on the form and function of an estuarine beach

Beach nourishment programs in estuaries can enhance shore protection, but they decrease habitat suitability by creating higher berms and wider backshores than would occur under natural conditions. Use of sediment sources from outside the area can result in sedimentary characteristics that differ from native sediments on the surface and at depth, altering conditions for both aeolian transport to dunes and interstitial fauna. Field data were gathered on an estuarine beach to determine differences in beach profile change, depth of sediment reworking, and potential for aeolian transport due to nourishment. Data were gathered over a 20-month period 6 months prior to nourishment, 3 days after nourishment, 6 months after nourishment, and 14 months after nourishment when the beach was mechanically graded to eliminate a vertical scarp in the foreshore. The nourishment consisted of 87,900m3 of sediment emplaced to create a 1.34-km-long, 30-m-wide berm 2.3m above mean tide level. Seven percent of the fill was removed from the profile within 6 months after nourishment, accompanied by 7m in horizontal retreat of the artificial berm. The fill on the backshore remained above the zone of wave influence over a winter storm season and was separated from the active foreshore by the scarp. Nourished sediments on the intertidal foreshore were significantly different from native sediments to a depth of 0.20m below the surface. A lag surface of coarse sediment formed by deflation on the backshore, resulting in a rate of aeolian transport <2% of the rate on the wave-reworked foreshore.Nourishing a beach to a level higher than would be created by natural processes can create a profile that compartmentalizes and restricts transport of sediment and movement of fauna between the foreshore and backshore. Mechanical grading can eliminate the scarp, allow for faunal interaction, and reestablish wave reworking of the backshore that will facilitate aeolian transport. Using an initial design to nourish the backshore at a lower elevation and allowing a dune to provide protection against flooding during major storms could prevent a scarp from forming and eliminate the need for follow-up grading. ?? 2010 Elsevier B.V.

Ecological Engineering↗

Demographic responses to climate change in a threatened Arctic species

The Arctic is undergoing rapid and accelerating change in response to global warming, altering biodiversity patterns, and ecosystem function across the region. For Arctic endemic species, our understanding of the consequences of such change remains limited. Spectacled eiders ( Somateria fischeri ), a large Arctic sea duck, use remote regions in the Bering Sea, Arctic Russia, and Alaska throughout the annual cycle making it difficult to conduct comprehensive surveys or demographic studies. Listed as Threatened under the U.S. Endangered Species Act, understanding the species response to climate change is critical for effective conservation policy and planning. Here, we developed an integrated population model to describe spectacled eider population dynamics using capture–mark–recapture, breeding population survey, nest survey, and environmental data collected between 1992 and 2014. Our intent was to estimate abundance, population growth, and demographic rates, and quantify how changes in the environment influenced population dynamics. Abundance of spectacled eiders breeding in western Alaska has increased since listing in 1993 and responded more strongly to annual variation in first-year survival than adult survival or productivity. We found both adult survival and nest success were highest in years following intermediate sea ice conditions during the wintering period, and both demographic rates declined when sea ice conditions were above or below average. In recent years, sea ice extent has reached new record lows and has remained below average throughout the winter for multiple years in a row. Sea ice persistence is expected to further decline in the Bering Sea. Our results indicate spectacled eiders may be vulnerable to climate change and the increasingly variable sea ice conditions throughout their wintering range with potentially deleterious effects on population dynamics. Importantly, we identified that different demographic rates responded similarly to changes in sea ice conditions, emphasizing the need for integrated analyses to understand population dynamics.

Ecology and Evolution↗

Filling the interspace—restoring arid land mosses: source populations, organic matter, and overwintering govern success

Biological soil crusts contribute to ecosystem functions and occupy space that could be available to invasive annual grasses. Given disturbances in the semiarid shrub steppe communities, we embarked on a set of studies to investigate restoration potential of mosses in sagebrush steppe ecosystems. We examined establishment and growth of two moss species common to the Great Basin, USA: Bryum argenteum and Syntrichia ruralis from two environmental settings (warm dry vs. cool moist). Moss fragments were inoculated into a third warm dry setting, on bare soil in spring and fall, both with and without a jute net and with and without spring irrigation. Moss cover was monitored in spring seasons of three consecutive years. Both moss species increased in cover over the winter. When Bryum received spring irrigation that was out of sync with natural precipitation patterns, moss cover increased and then crashed, taking two seasons to recover. Syntrichia did not respond to the irrigation treatment. The addition of jute net increased moss cover under all conditions, except Syntrichia following fall inoculation, which required a second winter to increase in cover. The warm dry population of Bryum combined with jute achieved on average 60% cover compared to the cool moist population that achieved only 28% cover by the end of the study. Differences were less pronounced for Syntrichia where moss from the warm dry population with jute achieved on average 51% cover compared to the cool moist population that achieved 43% cover by the end of the study. Restoration of arid land mosses may quickly protect soils from erosion while occupying sites before invasive plants. We show that higher moss cover will be achieved quickly with the addition of organic matter and when moss fragments originate from sites with a climate that is similar to that of the restoration site.

Ecology and Evolution↗

Processes governing phytoplankton blooms in estuaries. II: The role of horizontal transport

The development and distribution of phytoplankton blooms in estuaries are functions of both local conditions (i.e. the production-loss balance for a water column at a particular spatial location) and large-scale horizontal transport. In this study, the second of a 2-paper series, we use a depth-averaged hydrodynamic-biological model to identify transport-related mechanisms impacting phytoplankton biomass accumulation and distribution on a system level. We chose South San Francisco Bay as a model domain, since its combination of a deep channel surrounded by broad shoals is typical of drowned-river estuaries. Five general mechanisms involving interaction of horizontal transport with variability in local conditions are discussed. Residual (on the order of days to weeks) transport mechanisms affecting bloom development and location include residence time/export, import, and the role of deep channel regions as conduits for mass transport. Interactions occurring on tidal time scales, i.e. on the order of hours) include the phasing of lateral oscillatory tidal flow relative to temporal changes in local net phytoplankton growth rates, as well as lateral sloshing of shoal-derived biomass into deep channel regions during ebb and back into shallow regions during flood tide. Based on these results, we conclude that: (1) while local conditions control whether a bloom is possible, the combination of transport and spatial-temporal variability in local conditions determines if and where a bloom will actually occur; (2) tidal-time-scale physical-biological interactions provide important mechanisms for bloom development and evolution. As a result of both subtidal and tidal-time-scale transport processes, peak biomass may not be observed where local conditions are most favorable to phytoplankton production, and inherently unproductive areas may be regions of high biomass accumulation.

Marine Ecology Progress Series↗

Use of a latitudinal gradient in bald cypress (Taxodium distichum) production to examine physiological controls of biotic boundaries and potential responses to environment change

Aim: Predictions of vegetation change with global warming require models that accurately reflect physiological processes underlying growth limitations and species distributions. However, information about environmental controls on physiology and consequent effects on species boundaries and ecosystem functions such as production is limited, especially for forested wetlands that are potentially important carbon sinks. Location: The bald cypress (Taxodium distichum) region of the south-eastern United States was studied to examine how production of an important forested wetland varies with latitude and temperature as well as local hydrology. Methods: We used published data to analyse litter production across a latitudinal gradient from 26.2 to 37.8?? N to determine how bald cypress swamps might respond to alternate climate conditions and what changes might occur throughout the distributional range. Results: Litterfall rates followed a bell shaped curve, indicating that production was more limited at the distributional boundaries (c. 225 g/m2 year-1) compared to the mid-range (795-1126 g/m2 year-1). This pattern suggests that conditions are sub-optimal near both boundaries and that the absence of populations outside this latitudinal range may be largely due to physiological constraints on the carbon balance of dominant species. While dispersal limitations cannot be totally discounted, competition with other wetland types at the extremes of the range does not seem likely to be important because the relative basal area of bald cypress does not decrease near the edges of the range. Impaired hydrology depressed production across the entire range, but more in the south than the north. Main conclusions: Our findings suggest that (1) physiological limitations constrain biotic boundaries of bald cypress swamps; (2) future changes in global temperature would affect litter production in a nonlinear manner across the distributional range; (3) local changes in hydrology may interact with climate to further reduce litter production, particularly at lower latitudes; and (4) southernmost forests could be extirpated if environmental conditions compromise carbon balance and water-use efficiency of trees. ?? 2004 Blackwell Publishing Ltd.

Global Ecology and Biogeography↗

Phosphorus budgets in Everglades wetland ecosystems: The effects of hydrology and nutrient enrichment

The Florida Everglades is a naturally oligotrophic hydroscape that has experienced large changes in ecosystem structure and function as the result of increased anthropogenic phosphorus (P) loading and hydrologic changes. We present whole-ecosystem models of P cycling for Everglades wetlands with differing hydrology and P enrichment with the goal of synthesizing existing information into ecosystem P budgets. Budgets were developed for deeper water oligotrophic wet prairie/slough ('Slough'), shallower water oligotrophic Cladium jamaicense ('Cladium'), partially enriched C. jamaicense/Typha spp. mixture ('Cladium/Typha'), and enriched Typha spp. ('Typha') marshes. The majority of ecosystem P was stored in the soil in all four ecosystem types, with the flocculent detrital organic matter (floc) layer at the bottom of the water column storing the next largest proportion of ecosystem P pools. However, most P cycling involved ecosystem components in the water column (periphyton, floc, and consumers) in deeper water, oligotrophic Slough marsh. Fluxes of P associated with macrophytes were more important in the shallower water, oligotrophic Cladium marsh. The two oligotrophic ecosystem types had similar total ecosystem P stocks and cycling rates, and low rates of P cycling associated with soils. Phosphorus flux rates cannot be estimated for ecosystem components residing in the water column in Cladium/Typha or Typha marshes due to insufficient data. Enrichment caused a large increase in the importance of macrophytes to P cycling in Everglades wetlands. The flux of P from soil to the water column, via roots to live aboveground tissues to macrophyte detritus, increased from 0.03 and 0.2 g P m-2 yr-1 in oligotrophic Slough and Cladium marsh, respectively, to 1.1 g P m-2 yr -1 in partially enriched Cladium/Typha, and 1.6 g P m-2 yr-1 in enriched Typha marsh. This macrophyte translocation P flux represents a large source of internal eutrophication to surface waters in P-enriched areas of the Everglades. ?? 2007 Springer Science+Business Media, Inc.

Wetlands Ecology and Management↗