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USGS2012

Science in support of the Deepwater Horizon response

This introduction to the Special Feature presents the context for science during the Deepwater Horizon oil spill response, summarizes how scientific knowledge was integrated across disciplines and statutory responsibilities, identifies areas where scientific information was accurate and where it was not, and considers lessons learned and recommendations for future research and response. Scientific information was integrated within and across federal and state agencies, with input from nongovernmental scientists, across a diverse portfolio of needs—stopping the flow of oil, estimating the amount of oil, capturing and recovering the oil, tracking and forecasting surface oil, protecting coastal and oceanic wildlife and habitat, managing fisheries, and protecting the safety of seafood. Disciplines involved included atmospheric, oceanographic, biogeochemical, ecological, health, biological, and chemical sciences, physics, geology, and mechanical and chemical engineering. Platforms ranged from satellites and planes to ships, buoys, gliders, and remotely operated vehicles to laboratories and computer simulations. The unprecedented response effort depended directly on intense and extensive scientific and engineering data, information, and advice. Many valuable lessons were learned that should be applied to future events.

Alabama, Florida, Louisiana, Mississippi, Texas↗

USGS2015

Equation-free modeling unravels the behavior of complex ecological systems

Ye et al. (1) address a critical problem confronting the management of natural ecosystems: How can we make forecasts of possible future changes in populations to help guide management actions? This problem is especially acute for marine and anadromous fisheries, where the large interannual fluctuations of populations, arising from complex nonlinear interactions among species and with varying environmental factors, have defied prediction over even short time scales. The empirical dynamic modeling (EDM) described in Ye et al.’s report, the latest in a series of papers by Sugihara and his colleagues, offers a promising quantitative approach to building models using time series to successfully project dynamics into the future. With the term “equation-free” in the article title, Ye et al. (1) are suggesting broader implications of their approach, considering the centrality of equations in modern science. From the 1700s on, nature has been increasingly described by mathematical equations, with differential or difference equations forming the basic framework for describing dynamics. The use of mathematical equations for ecological systems came much later, pioneered by Lotka and Volterra, who showed that population cycles might be described in terms of simple coupled nonlinear differential equations. It took decades for Lotka–Volterra-type models to become established, but the development of appropriate differential equations is now routine in modeling ecological dynamics. There is no question that the injection of mathematical equations, by forcing “clarity and precision into conjecture” (2), has led to increased understanding of population and community dynamics. As in science in general, in ecology equations are a key method of communication and of framing hypotheses. These equations serve as compact representations of an enormous amount of empirical data and can be analyzed by the powerful methods of mathematics.

PNAS↗

USGS2003

Sequential megafaunal collapse in the North Pacific Ocean: An ongoing legacy of industrial whaling?

Populations of seals, sea lions, and sea otters have sequentially collapsed over large areas of the northern North Pacific Ocean and southern Bering Sea during the last several decades. A bottom-up nutritional limitation mechanism induced by physical oceanographic change or competition with fisheries was long thought to be largely responsible for these declines. The current weight of evidence is more consistent with top-down forcing. Increased predation by killer whales probably drove the sea otter collapse and may have been responsible for the earlier pinniped declines as well. We propose that decimation of the great whales by post-World War II industrial whaling caused the great whales' foremost natural predators, killer whales, to begin feeding more intensively on the smaller marine mammals, thus "fishing-down" this element of the marine food web. The timing of these events, information on the abundance, diet, and foraging behavior of both predators and prey, and feasibility analyses based on demographic and energetic modeling are all consistent with this hypothesis.

Proceedings of the National Academy of Sciences of↗

USGS2019

Mercury source changes and food web shifts alter contamination signatures of predatory fish from Lake Michigan

To understand the impact reduced mercury (Hg) loading and invasive species have had on methylmercury bioaccumulation in predator fish of Lake Michigan, we reconstructed bioaccumulation trends from a fish archive (1978 to 2012). By measuring fish Hg stable isotope ratios, we related temporal changes in Hg concentrations to varying Hg sources. Additionally, dietary tracers were necessary to identify food web influences. Through combined Hg, C, and N stable isotopic analyses, we were able to differentiate between a shift in Hg sources to fish and periods when energetic transitions (from dreissenid mussels) led to the assimilation of contrasting Hg pools (2000 to present). In the late 1980s, lake trout δ 202 Hg increased (0.4‰) from regulatory reductions in regional Hg emissions. After 2000, C and N isotopes ratios revealed altered food web pathways, resulting in a benthic energetic shift and changes to Hg bioaccumulation. Continued increases in δ 202 Hg indicate fish are responding to several United States mercury emission mitigation strategies that were initiated circa 1990 and continued through the 2011 promulgation of the Mercury and Air Toxics Standards rule. Unlike archives of sediments, this fish archive tracks Hg sources susceptible to bioaccumulation in Great Lakes fisheries. Analysis reveals that trends in fish Hg concentrations can be substantially affected by shifts in trophic structure and dietary preferences initiated by invasive species in the Great Lakes. This does not diminish the benefits of declining emissions over this period, as fish Hg concentrations would have been higher without these actions.

Lake Michigan↗

USGS2011

Groupers on the edge: Shelf edge spawning habitat in and around marine reserves of the northeastern Gulf of Mexico

The northeastern Gulf of Mexico contains some of the most diverse and productive marine habitat in the United States. Much of this habitat, located on the shelf edge in depths of 50 to 120 m, supports spawning for many economically important species, including groupers. Here, we couple acoustic surveys with georeferenced videography to describe the primary spatial and geologic features of spawning aggregation sites for four economically important species: gag ( Mycteroperca microlepis ), scamp ( M. phenax ), red grouper ( Epinephelus morio ), and red snapper ( Lutjanus campechanus ), with notes on fish distribution and abundance and spawning activities. We provide information on movement patterns of reef fish determined using acoustic telemetry. Finally, we discuss the possible coupling of geomorphology with hydrographic features to influence the overall productivity of the region and the importance of spatial fishery management in sustaining that productivity.

Northeastern Gulf of Mexico↗

USGS2005

Biotic and abiotic correlates with black bullhead population characteristics in Nebraska sandhill lakes

We explored relationships among black bullhead ( Ameiurus melas ) population characteristics and physicochemical attributes in shallow lakes and quantified relationships between population characteristics of black bullhead and sport fishes. Lake characteristics and fisheries survey data were collected from the Sandhills region of northcentral Nebraska from May through June, 1998 and 1999. Relative abundance of black bullheads was inversely related to proportional stock density (r=-0.672, df=15, P=0.004); however, neither relative weight nor growth was significantly (P ≥ 0.20) related to black bullhead relative abundance. Population characteristics of common panfish species such as bluegill ( Lepomis macrochirus ), green sunfish ( L. cyanellus ), pumpkinseed ( L. gibbosus ), and yellow perch ( Perca flavescens ) were not correlated with black bullhead relative abundance or size structure. Rather, proportional stock density (r=0.655, df=10, P=0.029) and growth (r=0.59, df=11, P=0.04) of black bullhead were positively related to relative abundance of largemouth bass ( Micropterus salmoides. ) Similarly, black bullhead relative abundance was inversely related to largemouth bass size structure (r=-0.51, df=14, P=0.05). Black bullhead mean length at age 3 was positively related to total phosphorous concentration (r=0.65, df=16, P=0.004), and bullhead relative abundance was positively related to shoreline development index (r=0.46, df=22, P=0.03). Population characteristics of black bullhead appeared to have little influence on panfish communities. Rather, black bullhead abundance, predator density, and lake productivity exhibited stronger relationships with black bullhead population characteristics.

Nebraska↗

USGS2008

Diel diet composition and feeding activity of round goby in the nearshore region of Lake Ontario

Expansion of the invasive round goby Apollonia melanostoma (=Neogobius melanostomus) throughout the Great Lakes drainage has created considerable concern among fisheries management agencies. These concerns have led to several studies on the biology and impact of the goby in the basin. However, little information exists on diel patterns in food consumption of the round goby. We examined the diets of 300 round gobies collected during crepuscular, diurnal, and nocturnal periods in Lake Ontario. There was little variation in the diel diet composition of the goby, as chironomid larvae were the major prey consumed during each period. Feeding intensity of the round goby was significantly (P<0.05) greater at night than during crepuscular or diurnal periods.

New York↗

USGS2018

Modeling White Sucker (Catostomus commersonii) populations to assess commercial harvest influence on age structure

Commercial harvest of White Suckers Catostomus commersonii for bait in the American Lobster Homarus americanus industry is minimally regulated in Maine and there are concerns as to the influence of increasing harvest. We built a population model using parameters (i.e. age-specific mortality, age at maturity, and size-specific fecundity) from literature and field studies to investigate the theoretical effects of harvest mortality on age structure. Because stock-recruitment relations are poorly characterized for this species, we explored the influence of both Beverton-Holt and Ricker recruitment processes. Our base model closely resembled the empirical age structures reported from three unfished lakes in Maine, with four percent of fish in the modeled spawning run being age-10 or older. We assessed the additive effects of harvest mortality on age structure using the full range of possible mortalities. As expected, increased harvest mortality in the model resulted in a decline and disappearance of older age-classes such that few fish greater than age-10 remained in the population under a realistic harvest mortality scenario. This age-truncation was qualitatively comparable to data from aggregate age distributions reported from three commercially harvested lakes in Maine. Because the loss of older fish may compromise population viability, this model is a valuable guidance tool for managers to craft regulation of this growing fishery.

Maine↗

USGS2009

Rehabilitation of Delavan Lake, Wisconsin

A comprehensive rehabilitation plan was developed and implemented to shift Delavan Lake , Wisconsin, from a hypereutrophic to a mesotrophic condition. The plan was threefold: (1) reduce external phosphorus (P) loading by applying Best Management Practices in the watershed, enhance an existing wetland, and short-circuit the inflows through the lake , (2) reduce internal P loading by treating the sediments with alum and removing carp, and (3) rehabilitate the fishery by removing carp and bigmouth buffalo and adding piscivores (biomanipulation). The first and second parts of the plan met with only limited success. With only minor reductions in internal and external P loading, P concentrations in the lake returned to near pre-treatment concentrations. The intensive biomanipulation and resulting trophic cascade (increased piscivores, decreased planktivores, increased large zooplankton populations, and reduced phytoplankton populations) eliminated most of the original problems in the lake (blue-green algal blooms and limited water clarity). However, now there is extensive macrophyte growth and abundant filamentous algae. Without significantly reducing the sources of the problems (high P loading) in Delavan Lake , the increased water clarity may not last. With an improved understanding of the individual components of this rehabilitation program, better future management plans can be developed for Delavan Lake and other lakes and reservoirs with similar eutrophication problems.

Wisconsin↗

USGS2010

Importance of benthic production to fish populations in Lake Mead prior to the establishment of quagga mussels

Limnologists recently have developed an interest in quantifying benthic resource contributions to higher-level consumers. Much of this research focuses on natural lakes with very little research in reservoirs. In this study, we provide a contemporary snapshot of the food web structure of Lake Mead to evaluate the contribution of benthic resources to fish consumers. In addition, we document the available food to fishes on soft sediments and changes to the invertebrate community over 2 time periods. Benthic invertebrate food availability for fishes is greater in Las Vegas Bay than Overton Arm. Las Vegas Bay is dominated by oligochaetes, whose biomass increased with depth, while Overton Arm is dominated by chironomids, whose biomass did not change with depth. Diet and isotopic measurements indicate the fish community largely relies on benthic resources regardless of basin (Las Vegas Bay >80%; Overton Arm >92%); however, the threadfin shad likely contribute more to largemouth and striped bass production in Overton Arm versus Las Vegas Bay. A 2-time period analysis, pre and post quagga mussel establishment and during lake level declines, suggests there is no change in the density of benthic invertebrates in Boulder Basin, but there were greater abundances of select taxa in this basin by season and depth than in other basins. Given the potential of alterations as a result of the expansion of quagga mussel and the reliance of the fishery on benthic resources, future investigation of basin specific, benthic processes is recommended.

Nevada↗

USGS2016

Voice, perceived fairness, agency trust, and acceptance of management decisions among Minnesota anglers

Although researchers agree that public participation in natural resource decision making is critical to institutional acceptance by stakeholders and the general public, the processes to gain public perceptions of fairness, agency trust, and acceptance of management decisions are not clear. Using results from a mail survey of Minnesota resident anglers, we used structural equation modeling to examine how instrumental versus symbolic motives related to anglers’ perceptions of agency fairness, trustworthiness, and ultimately acceptance of fisheries management decisions. We applied laboratory research on relationships among procedural fairness, trust, and management acceptance, and then tested models incorporating anglers’ perceptions of voice for anglers and nonanglers in management decisions. Results suggested that trust fully mediated the relationship between procedural fairness and management acceptance. Angler perceptions of angler and nonangler voice both related to views of procedural fairness, but angler voice was more strongly related and was also significantly related to acceptance of management decisions.

Society and Natural Resources↗

USGS1999

Diversifying natural resources value measurements: The Trinity River study

An interdisciplinary team set out to establish the economic and social values of the Trinity River in northern California . This information was intended to support the Secretary of the Interior's decision on allocation of Trinity River flows . This team set out to measure the values of Trinity River flows , fishery resources , and rec reation amenities in several different ways . A survey was mailed to users of the Trinity River . This single instrument included economic measures ( willingness - to pay and costs incurred in visiting ) and social - psychological measures ( importance , satisfaction , and water allocation preferences ). A closely related survey measured several of these same values among west coast regional households . The results of these surveys were compiled , and the measured economic and social values were compared . We found that integrating economic and social value information pro vides a greater depth of understanding of the resource's value . In addition , this integration provides a more in - depth understanding through the quantitative and qualitative results that emerge.

Society and Natural Resources↗

USGS2011

The effects of myxobolus cerebralis on the physiological performance of whirling disease resistant and susceptible strains of rainbow trout

The development of rainbow trout Oncorhynchus mykiss strains that are resistant to whirling disease has shown promise as amanagement tool for populationsin areas where Myxobolus cerebralisis present. However, the physiological effects of the disease on characteristics necessary for fish survival in natural river conditions have not been tested in many of these strains. Five rainbow trout strains were evaluated for their swimming ability and growth characteristics in relation to M. cerebralis exposure: the resistant German rainbow trout (GR) strain (Hofer strain), the susceptible Colorado River rainbow trout (CRR) strain, and three intermediate (hybrid) strains (F1 = GR ?? CRR; F2 = F1 ?? F1; B2 = backcross of F1 ?? CRR). Three broad response patterns among strain and exposure were evident in our study. First, exposure metrics, growth performance, and swimming ability differed among strains. Second, exposure to the parasite did not necessarily produce differences in growth or swimming ability. Exposure to M. cerebralis did not affect batch weight for any strain, and critical swimming velocity did not differ between exposed and unexposed families. Third, although exposure did not necessarily affect growth or swimming ability, individuals that exhibited clinical deformities did show reduced growth and swimming performance; fish with clinical deformities were significantly smaller and had lower critical swimming velocities than exposed fish without clinical deformities. Research and management have focused on GR ?? CRR hybrid strains; however, given the performance of the GR strain in our study, it should not be discounted as a potential broodstock. Additional field trials comparing the GR and F1 strains should be conducted before wholesale adoption of the GR strain to reestablish rainbow trout populations in Colorado. ?? American Fisheries Society 2011.

Journal of Aquatic Animal Health↗

USGS2014

Susceptibility of Koi and Yellow Perch to infectious hematopoietic necrosis virus by experimental exposure

Infectious hematopoietic necrosis virus (IHNV) is a novirhabdoviral pathogen that originated in western North America among anadromous Pacific salmonids. Severe disease epidemics in the late 1970s resulting from IHNV's invasion into farmed Rainbow Trout Oncorhynchus mykiss in North America, Asia, and Europe emphasized IHNV's ability to adapt to new hosts under varying rearing conditions. Yellow Perch Perca flavescens and Koi Carp Cyprinus carpio (hereafter, “Koi”) are aquaculture-reared fish that are highly valued in sport fisheries and the ornamental fish trade, respectively, but it is unknown whether these fish species are vulnerable to IHNV infection. In this study, we exposed Yellow Perch, Koi, and steelhead (anadromous Rainbow Trout) to IHNV by intraperitoneal injection (10 6 PFU/fish) and by immersion (5.7×10 5 PFU/mL) for 7 h, and monitored fish for 28 d. The extended immersion exposure and high virus concentrations used in the challenges were to determine if the tested fish had any level of susceptibility. After experimental exposure, Yellow Perch and Koi experienced low mortality (<6%) compared with steelhead (>35%). Virus was found in dead fish of all species tested and in surviving Yellow Perch by plaque assay and quantitative reverse transcription polymerase chain reaction (qPCR), with a higher prevalence in Yellow Perch than Koi. Infectious virus was also detected in Yellow Perch out to 5 d after bath challenge. These findings indicate that Yellow Perch and Koi are highly resistant to IHNV disease under the conditions tested, but Yellow Perch are susceptible to infection and may serve as possible virus carriers.

Journal of Aquatic Animal Health↗

USGS2011

Using remote sensing and imagery exploitation to monitor the dynamics of East Timbalier Island, LA: 2000-2010

In 1999, the National Oceanic and Atmospheric Administration-National Marine Fisheries Service and the State of Louisiana jointly undertook the restoration of East Timbalier, a barrier island along a sediment-starved portion of the Gulf of Mexico coast of Louisiana. High-resolution overhead imagery was used to monitor the course of this restoration effort. This article describes the changes in area and movement of East Timbalier Island and compares these changes with the previous measurements. Between 2000 and 2010, East Timbalier Island lost 52–66% of its area and moved northwards 12–105 m/year. The area of East Timbalier Island is less today than at any time since 1887. Understanding of the physical processes in nature that control the size, shape and movement of the island, as well as the human impacts that have hastened its degradation, is critical for accomplishing any future restoration.

Louisiana↗

USGS2022

Effects of capture depth on walleye hooking mortality during ice fishing

Length-based regulations are a common tool used to limit fishing mortality by controlling the size of fish harvested. While such regulations are helpful in managing fish populations, mortality associated with catch-and-release fishing may negatively impact a fishery. We evaluated factors affecting hooking mortality of walleye ( Sander vitreus ) in 2 mainstem Missouri River reservoirs in South Dakota. Winter walleye hooking mortality was evaluated during the ice fishing season in February and March 2020. After capture, walleye ( n = 55) were placed into holding pens for 12 to 72 h to monitor postrelease mortality. Hooking mortality was found to be 20% following angling. Capture depth, landing time, and time in pen were the most influential variables on probability of hooking mortality ( p m ). We observed a sharp increase in p m for walleye captured at depths from 10 to 12 m, where the probability of mortality for fish increased appreciably from 5 to 37%, respectively. Our findings indicate that hooking mortality during the ice fishing season can be substantial in lakes where walleye angling occurs at depths greater than 10 m.

South Dakota↗

USGS2006

Phosphorus geochemistry of recent sediments in the South Basin of Lake Winnipeg

Lake Winnipeg supports the largest commercial fishery on Canadian Prairies. It has been influenced by a variety of environmental forces and anthropogenic activities. To gain a better understanding of recent changes in nutrient status of the lake, it is important to reconstruct its previous history from sedimentary records. Lacustrine sediments are known to be an important sink of many dissolved and suspended substances, including phosphorus, hence, they provide a permanent historical record of changes occurring in the lake. These changes may be induced by natural factors or by anthropogenic activities in the watershed. Phosphorus profiles from dated sediment cores collected in 1999 and 1994 from the South Basin of Lake Winnipeg were investigated to determine phosphorus enrichment in recent sediments. To interpret the nutrient status and depositional conditions responsible for the trends in total phosphorus, three operationally defined forms of phosphorus (P) were determined: non-apatite inorganic P, apatite P, and organic P. Significant increases in sediment phosphorus concentrations were observed in the uppermost 20 cm of the cores and several anomalies were observed at depth. A doubling in total phosphorus relative to aluminum over the last fifty years is largely due to increases in the non-apatite inorganic fraction, suggesting that much of sedimentary phosphorus increase is attributable to changes in the nutrient status of the water column related to anthropogenic inputs. Organic phosphorus exhibits a subtle increase in the upper 20 cm of the gravity cores, likely due to increases in the primary productivity of the lake. Except for the slight increase in deeper sediments, apatite phosphorus, which is thought to be of detrital origin, remained fairly constant over the length of the cores. Anomalous spikes in phosphorus concentrations deeper in the cores, comprised mainly of the non-apatite inorganic phosphorus fraction, likely resulted from natural variation in local oxidizing conditions, possibly induced by changes in water circulation and/or changes in sediment deposition rates due to climatic variation. The results of this investigation contribute to increased understanding of the depositional history of phosphorus in the lake over the last millennium.

Lake Winnipeg↗

USGS2009

Review of fish diversity in the Lake Huron basin

Lake Huron has a rich aquatic habitat diversity that includes shallow embayments, numerous tributaries, shallow mid-lake reef complexes, archipelagos, and profundal regions. These habitats provide support for warm, cool, and cold water fish communities. Diversity of fishes in Lake Huron reflects post-glaciation colonization events, current climate conditions, accidental and intentional introductions of non-indigenous species, and extinctions. Most extinction events have been largely associated with habitat alterations, exploitation of fisheries, and interactions with non-indigenous species. The most recent historical survey of extirpated and imperiled species conducted in the late 1970s identified 79 fish species in Lake Huron proper and about 50 additional species in tributaries. Of those 129 species, 20 are now considered extirpated or imperiled. Extirpated species include Arctic grayling, paddlefish, weed shiner, deepwater cisco, blackfin cisco, shortnose cisco, and kiyi. Six species have declined appreciably due to loss of clear-water stream habitat: the river redhorse, river darter, black redhorse, pugnose shiner, lake chubsucker, redside dace, eastern sand darter, and channel darter. While numerous agencies, universities, and other organizations routinely monitor nearshore and offshore fish distribution and abundance, there is a need for more rigorous examination of the distribution and abundance of less-common species to better understand their ecology. This information is critical to the development of management plans aimed at ecosystem remediation and restoration.

Conference Paper↗