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USGS2002

Distribution, production, and ecophysiology of Picocystis strain ML in Mono Lake, California

A recently described unicellular chlorophytic alga isolated from meromictic Mono Lake, California, occupies a niche that spans two environments: the upper oxic mixolimnion and the deeper anoxic and highly reducing monimolimnion. This organism, Picocystis sp. strain ML, accounts for nearly 25% of the primary production during the winter bloom and more than 50% at other times of the year. In incubations, it is heavily grazed by the brine shrimp, Artemia monica. We assessed growth and photosynthetic parameters over broad ranges of irradiance, salinity, and pH and under oxic and anoxic conditions. Picocystis appears to be particularly adapted to low irradiance; we observed an order of magnitude increase in the cellular pigment concentrations, as well as marked increases in cellspecific photosynthetic parameters for cells acclimated to low-growth irradiance. Growth rates of 0.3–1.5 d21 were observed over a salinity range of 0–260‰ and a pH range of 4–12, with maximal growth at ;50 mmol photons m22 s21 , 40‰, and pH 6–10. Growth and oxygenic photosynthesis were observed under anoxic conditions at rates comparable to those measured under oxic conditions. The ability of the organism to acclimate and grow under such a broad range of environmental conditions makes it an important component of the Mono Lake ecosystem and likely contributes to its dominance of the monimolimnion/mixolimnion interface.

California↗

USGS2002

Sea otter ( Enhydra lutris ) perspective: Part B. Food limitation and the recovery of sea otters following the Exxon Valdez oil spill

We examined the potential role of food limitation in constraining recovery of sea otters in Prince William Sound, Alaska, following the <i>Exxon Valdez</i> oil spill. The spill resulted in the removal of a large number of sea otters in 1989, and as of 1998, the portion of the population in the heavily oiled northern Knight Island region had not fully recovered. Between 1996 and 1998, prey consumption rate was higher and the condition of sea otters was better at northern Knight Island than in an unoiled area of the sound (Montague Island). Estimates of prey energy available per unit mass of sea otter were about 4 times higher at Knight than Montague Island, albeit not significantly different between the two areas. Over this same period, the number of sea otters remained constant at northern Knight Island but increased at Montague Island. These data suggest that food was at least as abundant at Knight than at Montague Island, and that recovery of sea otters via intrinsic population growth was limited by factors other than food. However, the availability of food, the prey consumption rate, and the condition of sea otters were all much lower at both Knight and Montague Islands than in areas newly occupied by sea otters where the population growth rate was near the theoretical maximum. It is possible that the relative short supply of food (compared to areas where sea otter population growth rate was high) may have inhibited immigration or interacted with other factors (e.g., oil-induced mortality or predation) to restrict sea otter population growth. Nonetheless, these data suggest that impacts of anthropogenic disturbances on large, often food-limited vertebrate predators can persist in spite of the availability of food resources that are sufficient for intrinsic population growth.

Alaska↗

USGS2017

Low thinning and crown thinning of two severities as restoration tools at Redwood National Park

Interest in the restoration of second-growth forests has continued to increase in the redwood region, which has further increased the importance of evaluating restoration-based silvicultural strategies. This study assessed the short-term effectiveness of four silvicultural treatments (two silvicultural thinning methods, low thinning and crown thinning, and two basal area retentions, 80 percent and 45 percent) as forest restoration tools via analysis of relative basal area growth at Redwood National Park. Prior to treatment, the second-growth stand had more than 1,600 trees ha -1 and 70.0 m 2 ha -1 basal area and consisted primarily of two species, Douglas-fir ( Pseudotsuga menziesii (Mirb.) Franco) (the dominant species) and redwood ( Sequoia sempervirens (D. Don) Endl.). Growth was enhanced for all treatments with 5-year net basal area gains of 28.4 percent for the lowretention crown thinning, 28.1 percent for the low-retention low thinning, 23.3 percent for the high-retention crown thinning, 19.1 percent for high-retention low thinning, and only 14.2 percent for the control. We conclude that all four thinning treatments improved tree growth; but among them, the low-retention treatments were most effective in accomplishing restoration objectives, while the high-retention low thinning was least effective. Increasing the array of silvicultural tools that Redwood National Park can use may prove helpful in accomplishing restoration goals in future projects.

California↗

USGS2018

Incorporating an approach to aid river and reservoir fisheries in an altered landscape

Reservoir construction for human-use services alters connected riverine flow patterns and influences fish production. We sampled two pelagic fishes from two rivers and two reservoirs and related seasonal and annual hydrology patterns to the recruitment and growth of each species. River and reservoir populations of Freshwater Drum Aplodinotus grunniens reached similar ages (32 and 31, respectively). Likewise, longevity of Gizzard Shad Dorosoma cepedianum between the two systems was also similar (7 and 8 years, respectively). However, both species grew larger in the rivers compared to reservoir residents. Recruitment of Freshwater Drum in reservoirs was negatively related to water retention time (r2=0.59) suggesting moving water through the reservoir was beneficial. Riverine recruitment of Freshwater Drum populations was negatively related to the annual number of flow reversals and positively related to prespawn discharge (r2 = 0.33). Unlike Freshwater Drum, there was no relationship between flow metrics and Gizzard Shad recruitment in reservoirs. However, recruitment of riverine Gizzard Shad was positively related to high flow pulses during the prespawn and spawning seasons (r2 = 0.48). The growth of both species in reservoirs was positively related to the number of days each year that water levels were above the conservation pool. Growth of Freshwater Drum was also negatively related to minimum reservoir summer water levels (r2 = 0.84). Growth of both Freshwater Drum and Gizzard Shad occupying lotic systems was positively related to May (r2 = 0.86) and July discharge (r2 = 0.84), respectively. In general, growth and recruitment of the reservoir populations was more related to annual water patterns, whereas riverine fishes responded more to seasonal flow patterns. Results of this study provide important information on the relationship between hydrology and pelagic fish production in both rivers and reservoirs. This information is useful if agencies are interested in developing holistic river-reservoir water-allocation plans.

Cooperator Science Series↗

USGS2020

Wind River subbasin restoration: Annual report of US..Geological Survey activities, January 2018 through December 2018

We sampled juvenile wild Steelhead Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize populations and investigate life-history metrics, particularly migratory patterns. We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead have been planted in the Wind River subbasin since 1997, and hatchery adults are estimated to be less than one percent of spawners in most years (pers comm. Thomas Buehrens, Washington Department of Fish and Wildlife). Our repeated headwater sampling of consistent sites in the Wind River subbasin has also allowed us to track relative abundance of Brook Trout, a non-native species to the Wind River. Our work is contributing to understanding of Steelhead population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, where our PTISs are helping to quantify adult response. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1). Specifically this work addresses the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild Steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. Our headwaters parr PIT tagging, WDFW parr, smolt, and adult tagging and our instream PTISs are providing data on movements and life histories of parr, smolt, and adult Steelhead. During summer 2018, we PIT-tagged 1,592 age-0 and age-1 Steelhead parr in headwater areas of the Wind River subbasin to characterize population traits and investigate life-history diversity, including growth and pre-smolt downstream movement. Repeat headwater sampling and smolt trap operations provide opportunities for recapture, and instream PTISs and Columbia River infrastructure provide opportunity for detection of PIT-tagged fish. Throughout the year, we maintained a series of six instream PTISs to monitor movement of tagged Steelhead parr, smolts, and adults. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Substantial numbers of parr make downstream movements as age-1 fish. We have estimated that from 15 to 33 percent of parr tagged as age-0 fish make downstream migrations at age-1 for additional rearing. We have estimated that from 1 to 27 percent of parr tagged as age-1 fish make downstream migrations during fall. These findings raise many questions about parr rearing strategies, habitat use, and success of these migrants and suggest a need for broader monitoring of juvenile Steelhead in some river systems to fully document juvenile production. Long-term monitoring of PIT-tagged fish is providing information on contribution of various life-history strategies to smolt production and adult returns. Movements of PIT-tagged adult Steelhead were recorded at instream PTISs. These data have allowed assessment of adult returns to tributary watersheds within the Wind River subbasin. Detection efficiency of adult PIT-tagged Steelhead at our primary adult-monitoring PTIS in Trout Creek has been greater than 92 percent during 6 of the past 7 years. This is providing excellent data to estimate adult returns to this watershed. Determination of adult use of tributary watersheds is providing data to help evaluate the efficacy of the removal of Hemlock Dam on Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek, was removed in summer 2009. The dam contributed to hydrologic impairment of Trout Creek and had potential negative effects on Steelhead. The improvements made to the upper Wind River PTIS (site code WRU at rkm 28.3; better site characteristics and grid power) during 2016 and 2017, and a planned new site in the Mine Reach of the upper Wind River, will allow estimates of subbasin adult escapement like those in Trout Creek. During 2018, we also completed planning and permitting with U.S. Forest Service for a new PTIS site at rkm 36 of the Wind River (the Mine Reach, mentioned above). This site will replace two sites (one in Paradise Creek and one at rkm 41 of the Wind River), which had operational challenges due to lack of adequate solar power and winter difficulties. The new Mine Reach PTIS site at rkm 36, will have better solar exposure, fewer winter operations difficulties, and provide opportunity to detect fish from juvenile sampling sites that were downstream of the previous two PTISs. The more consistent operation of the new Mine Reach PTIS site will increase our ability to estimate migrant abundance as all the juveniles tagged upstream of it will be subject to the same potential detection history, instead of three different potential detection histories as before. Additionally, with the new Mine Reach PTIS site lower in the watershed, it will subject more PIT-tagged adult Steelhead to detection and provide ability to generate a nonbiased adult-detection efficiency estimate for the WRU PTIS at rkm 28.3 of the Wind River. This will provide the opportunity to estimate yearly adult Steelhead abundance to the upper Wind watershed area. Permitting is complete and some supplies have been purchased to build and install this new site in 2019. Repeat sampling at consistent locations in the subbasin has allowed investigation into juvenile Steelhead growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer are similar across the subbasin, but lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly growth for parr tagged at age-0 is similar across the subbasin. Yearly growth for parr tagged at age-1 is lowest in Martha Creek, but similar elsewhere. Non-native Brook Trout are present in portions of the subbasin, chiefly the Trout Creek watershed, and repeat sampling has allowed us to index their prevalence. Percentage of catch that is Brook Trout at each of four sample sites in Trout Creek have declined from the period 1998 – 2003 to the period 2011 – 2018. There was a pattern of decline in percent of catch and number of Brook Trout at the Trout Creek sites from 2011 through 2016, though a slight upward trend during 2017 and 2018 has been evident. Evaluating and planning restoration efforts are of interest to many managers and agencies to ensure efficient use of resources. The evaluation of various life-histories of Steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Movement of Steelhead parr raises many questions regarding estimating juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT tagging of age-0 and age-1 Steelhead parr are increasingly allowing us to investigate such questions. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those in the Wind River subbasin, provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

USGS2000

Effects of introduced crayfish on selected native fishes of Arizona

The virile crayfish ( Orconectes virilis ), an aggressive polytrophic species, has been introduced into many Arizona streams. I investigated competition and predation between this crayfish and several native Arizona fishes. I conducted field experiments to assess competition for food between crayfish and fish, and laboratory experiments to examine competition for shelter and food, and predation. In Sabino Creek, I manipulated crayfish densities in isolated pools to examine effects of crayfish on growth, mortality, and recruitment of Gila chub ( Gila intermedia ). Regardless of crayfish density, Gila chub declined slightly in weight and condition. Mortality and recruitment did not differ between densities of crayfish. I examined crayfish effects on benthic macroinvertebrates, a submerged aquatic macrophyte and associated invertebrates, and three fish species in a small stream in the White Mountains by fencing eight stream sections to prevent movement. The three fishes were speckled dace ( Rhinichthys osculus ), Sonora sucker ( Catostomus insignis ), and desert sucker ( C. clarki ). Molluscs > 10 mm and macrophytes were less abundant at sites with a high density of crayfish than at sites with low crayfish densities. Insect diversity was lower in high- vs. low-density sites. No treatment effect was observed on growth or condition of individually marked fish. Short-term laboratory experiments demonstrated predatory interactions and competition for shelter between crayfish and Gila chub, desert sucker, and speckled dace. Crayfish used shelter more than fish, displaced fish from shelter, and frequently attacked fish. Fish never attacked crayfish, and only once displaced crayfish from shelter. In predation experiments, crayfish preyed upon all species, but preyed most heavily upon desert suckers. Fish never altered use of the water column in the presence of crayfish. Density manipulation experiments in a laboratory measured food competition between crayfish and two native fishes. Growth of Gila chub was less affected by crayfish than by increased density of Gila chub. Thus crayfish are not strong competitors with Gila chub for food. However, growth of flannelmouth sucker ( Catostomus latipinnis ) was negatively impacted by presence of crayfish. These laboratory experiments provide evidence that introduced crayfish can reduce fish growth by competition for food, and that native fishes are vulnerable to crayfish predation.

Thesis↗

USGS1975

Fitting Richards' curve to data of diverse origins

Published techniques for fitting data to nonlinear growth curves are briefly reviewed, most techniques require knowledge of the shape of the curve. A flexible growth curve developed by Richards (1959) is discussed as an alternative when the shape is unknown. The shape of this curve is governed by a specific parameter which can be estimated from the data. We describe in detail the fitting of a diverse set of longitudinal and cross-sectional data to Richards' growth curve for the purpose of determining the age of red fox (Vulpes vulpes) pups on the basis of right hind foot length. The fitted curve is found suitable for pups less than approximately 80 days old. The curve is extrapolated to pre-natal growth and shown to be appropriate only for about 10 days prior to birth.

Growth↗

USGS2015

Identifying multiple timescale rainfall controls on Mojave Desert ecohydrology using an integrated data and modeling approach for Larrea tridentata

The perennial shrub Larrea tridentata is widely successful in North American warm deserts but is also susceptible to climatic perturbations. Understanding its response to rainfall variability requires consideration of multiple timescales. We examine intra-annual to multi-year relationships using model simulations of soil moisture and vegetation growth over 50 years in the Mojave National Preserve in southeastern California (USA). Ecohydrological model parameters are conditioned on field and remote sensing data using an ensemble Kalman filter. Although no specific periodicities were detected in the rainfall record, simulated leaf-area-index exhibits multi-year dynamics that are driven by multi-year (&sim;3-years) rains, but with up to a 1-year delay in peak response. Within a multi-year period, Larrea tridentata is more sensitive to winter rains than summer. In the most active part of the root zone (above &sim;80 cm), >1-year average soil moisture drives vegetation growth, but monthly average soil moisture is controlled by root uptake. Moisture inputs reach the lower part of the root zone (below &sim;80 cm) infrequently, but once there they can persist over a year to help sustain plant growth. Parameter estimates highlight efficient plant physiological properties facilitating persistent growth and high soil hydraulic conductivity allowing deep soil moisture stores. We show that soil moisture as an ecological indicator is complicated by bidirectional interactions with vegetation that depend on timescale and depth. Under changing climate, Larrea tridentata will likely be relatively resilient to shorter-term moisture variability but will exhibit higher sensitivity to shifts in seasonal to multi-year moisture inputs.

California↗

USGS2016

Evaluating within-population variability in behavior and demography for the adaptive potential of a dispersal-limited species to climate change

Multiple pathways exist for species to respond to changing climates. However, responses of dispersal-limited species will be more strongly tied to ability to adapt within existing populations as rates of environmental change will likely exceed movement rates. Here, we assess adaptive capacity in Plethodon cinereus , a dispersal-limited woodland salamander. We quantify plasticity in behavior and variation in demography to observed variation in environmental variables over a 5-year period. We found strong evidence that temperature and rainfall influence P. cinereus surface presence, indicating changes in climate are likely to affect seasonal activity patterns. We also found that warmer summer temperatures reduced individual growth rates into the autumn, which is likely to have negative demographic consequences. Reduced growth rates may delay reproductive maturity and lead to reductions in size-specific fecundity, potentially reducing population-level persistence. To better understand within-population variability in responses, we examined differences between two common color morphs. Previous evidence suggests that the color polymorphism may be linked to physiological differences in heat and moisture tolerance. We found only moderate support for morph-specific differences for the relationship between individual growth and temperature. Measuring environmental sensitivity to climatic variability is the first step in predicting species' responses to climate change. Our results suggest phenological shifts and changes in growth rates are likely responses under scenarios where further warming occurs, and we discuss possible adaptive strategies for resulting selective pressures.

Ecology and Evolution↗

USGS2021

Multiple coping strategies maintain stability of a small mammal population in a resource-restricted environment

In semi-arid environments, aperiodic rainfall pulses determine plant production and resource availability for higher trophic levels, creating strong bottom-up regulation. The influence of climatic factors on population vital rates often shapes the dynamics of small mammal populations in such resource-restricted environments. Using a 21-year biannual capture–recapture dataset (1993 to 2014), we examined the impacts of climatic factors on the population dynamics of the brush mouse ( Peromyscus boylii ) in semi-arid oak woodland of coastal-central California. We applied Pradel's temporal symmetry model to estimate capture probability ( p ), apparent survival ( φ ), recruitment ( f ), and realized population growth rate ( λ ) of the brush mouse and examined the effects of temperature, rainfall, and El Niño on these demographic parameters. The population was stable during the study period with a monthly realized population growth rate of 0.993 ± SE 0.032, but growth varied over time from 0.680 ± 0.054 to 1.450 ± 0.083. Monthly survival estimates averaged 0.789 ± 0.005 and monthly recruitment estimates averaged 0.175 ± 0.038. Survival probability and realized population growth rate were positively correlated with rainfall and negatively correlated with temperature. In contrast, recruitment was negatively correlated with rainfall and positively correlated with temperature. Brush mice maintained their population through multiple coping strategies, with high recruitment during warmer and drier periods and higher survival during cooler and wetter conditions. Although climatic change in coastal-central California will likely favor recruitment over survival, varying strategies may serve as a mechanism by which brush mice maintain resilience in the face of climate change. Our results indicate that rainfall and temperature are both important drivers of brush mouse population dynamics and will play a significant role in predicting the future viability of brush mice under a changing climate.

California↗

USGS2015

Proximity to encroaching coconut palm limits native forest water use and persistence on a Pacific atoll

Competition for fresh water between native and introduced plants is one important challenge facing native forests as rainfall variability increases. Competition can be especially acute for vegetation on Pacific atolls, which depend upon consistent rainfall to replenish shallow groundwater stores. Patterns of sap flow, water use, and diameter growth of Pisonia grandis trees were investigated on Sand Islet, Palmyra Atoll, Line Islands, during a period of low rainfall. Sap flow in the outer sapwood was reduced by 53% for P . grandis trees growing within coconut palm ( Cocos nucifera ) stands ( n  = 9) versus away from coconut palm ( n  = 9). This suggested that water uptake was being limited by coconut palm. Radial patterns of sap flow into the sapwood of P . grandis also differed between stands with and without coconut palm, such that individual tree water use for P . grandis ranged from 14 to 67 L day −1 , averaging 47·8 L day −1 without coconut palm and 23·6 L day −1 with coconut palm. Diameter growth of P . grandis was measured from nine islets. In contrast to sap flow, competition with coconut palm increased diameter growth by 89%, equating to an individual tree basal area increment of 5·4 versus 10·3 mm 2  day −1 . Greater diameter growth countered by lower rates of water use by P . grandis trees growing in competition with coconut palm suggests that stem swell may be associated with water storage when positioned in the understory of coconut palm, and may facilitate survival when water becomes limiting until too much shading overwhelms P . grandis .

Palmyra Atoll↗

USGS2019

Soil characteristics are associated with gradients of big sagebrush canopy structure after disturbance

Reestablishing shrub canopy cover after disturbance in semi-arid ecosystems, such as sagebrush steppe, is essential to provide wildlife habitat and restore ecosystem functioning. While several studies have explored the effects of landscape and climate factors on the success or failure of sagebrush seeding, the influence of soil properties on gradients of shrub canopy structure in successfully seeded areas remains largely unexplored. In this study, we evaluated associations between soil properties and gradients in sagebrush canopy structure in stands that had successfully reestablished after fire and subsequent seeding treatments. Using a dataset collected across the Great Basin, USA, of sagebrush stands that had burned and reestablished between 1986 and 2013, we tested soil depth and texture, soil surface classification, biological soil crusts plus mean historical precipitation, solar heatload, and fire history as modeling variables to explore gradients in sagebrush canopy structure growth in terms of cover, height, and density. Deeper soils were associated with greater sagebrush canopy structure development in terms of plant density and percent cover, coarser textured soils were associated with greater sagebrush cover and density, and more clayey soils were typically associated with greater height. Biological crust presence was also positively associated with enhanced sagebrush canopy growth, but adding more demographically or morphologically explicit descriptions of biocrust communities did not improve explanatory power. Increasing heatload had a negative effect on sagebrush canopy structure growth, and increased mean annual precipitation was only associated with greater sagebrush height. Given that conservation and restoration of the sagebrush steppe ecosystems has become a priority for land managers, the associations we identify between gradients in post-fire sagebrush canopy structure growth and field-identifiable soil characteristics may improve planning of land treatments for sagebrush restoration and the understanding of semi-arid ecosystem functioning and post-disturbance dynamics.

Ecosphere↗

USGS2023

Drought survival strategies differ between coastal and montane conifers in northern California

Increasingly severe and prolonged droughts are contributing to tree stress and forest mortality across western North America. However, in many cases, we currently have poor information concerning how drought responses in forests vary in relation to competition, climate, and site and tree characteristics. We used annual tree ring evidence of 13 C discrimination (Δ 13 C) and growth metrics to assess drought resistance and resilience for six conifer species at the intersection of several bioregions in northern California. Within each species' range in northern California, we collected competition and tree characteristics from 270 focal trees across sites that varied from wetter to drier habitat conditions (54 sites). Across sites, all six conifer species weathered the severe 2013–2015 drought with reasonably high resistance and post-drought resilience. However, we found important differences in drought responses between coastal and montane species based on annual growth and Δ 13 C metrics. Broadly, the two coastal species showed consistent declines in drought resistance across successive drought years, whereas the four montane species maintained high drought resistance across drought years. More specifically, we found lower Δ 13 C and growth during drought years in coastal species, suggesting stomatal closure during drought with the potential for vulnerability to carbon depletion during long-term drought. Conversely, Δ 13 C and growth were stable in montane species throughout the drought, which may contribute to hydraulic failure under increased drought frequency and/or severity. We also evaluated environmental factors that affect Δ 13 C using data from before and during the drought. These physiological models were consistent for the two coastal species, with a positive relationship between annual precipitation and Δ 13 C and a negative relationship between tree density and Δ 13 C. Conversely, the four montane models illustrated a greater importance of site conditions on drought responses for these species. Our findings show differential risk for drought stress across diverse conifers during severe drought. This work highlights the importance of site and tree characteristics in determining drought responses across cool, annually humid coastal habitats to seasonally dry montane habitats.

California↗

USGS2018

Inferring species interactions through joint mark–recapture analysis

Introduced species are frequently implicated in declines of native species. In many cases, however, evidence linking introduced species to native declines is weak. Failure to make strong inferences regarding the role of introduced species can hamper attempts to predict population viability and delay effective management responses. For many species, mark–recapture analysis is the more rigorous form of demographic analysis. However, to our knowledge, there are no mark–recapture models that allow for joint modeling of interacting species. Here, we introduce a two‐species mark–recapture population model in which the vital rates (and capture probabilities) of one species are allowed to vary in response to the abundance of the other species. We use a simulation study to explore bias and choose an approach to model selection. We then use the model to investigate species interactions between endangered humpback chub ( Gila cypha ) and introduced rainbow trout ( Oncorhynchus mykiss ) in the Colorado River between 2009 and 2016. In particular, we test hypotheses about how two environmental factors (turbidity and temperature), intraspecific density dependence, and rainbow trout abundance are related to survival, growth, and capture of juvenile humpback chub. We also project the long‐term effects of different rainbow trout abundances on adult humpback chub abundances. Our simulation study suggests this approach has minimal bias under potentially challenging circumstances (i.e., low capture probabilities) that characterized our application and that model selection using indicator variables could reliably identify the true generating model even when process error was high. When the model was applied to rainbow trout and humpback chub, we identified negative relationships between rainbow trout abundance and the survival, growth, and capture probability of juvenile humpback chub. Effects on interspecific interactions on survival and capture probability were strongly supported, whereas support for the growth effect was weaker. Environmental factors were also identified to be important and in many cases stronger than interspecific interactions, and there was still substantial unexplained variation in growth and survival rates. The general approach presented here for combining mark–recapture data for two species is applicable in many other systems and could be modified to model abundance of the invader via other modeling approaches.

Ecology↗

USGS2015

Export of fine particulate organic carbon from redwood-dominated catchments

Recently, researchers have recognized the significant role of small mountainous river systems in the transport of carbon from terrestrial environments to the ocean, and the scale of such studies have ranged from channel bed units to continents. In temperate zones, these mountain river systems commonly drain catchments that are largely forested. However, the magnitude of carbon export from rivers draining old-growth redwood forests has not been evaluated to date. Old-growth redwood stands support some of the largest quantities of biomass in the world, up to 350 000 Mg of stem biomass km -2 and soil organic carbon can reach 46 800 Mg km -2 . In north coastal California, suspended sediment samples were collected at three gaging stations for two to four years on streams draining old-growth redwood forests. Carbon content, determined through loss-on-ignition tests, was strongly correlated with turbidity, and continuous turbidity records from the gaging stations were used to estimate annual carbon exports of 1 · 6 to 4 · 2 Mg km -2  yr -1 . These values, representing 13 to 33% of the suspended sediment load, are some of the highest percentages reported in the global literature. The fraction of organic carbon as part of the suspended sediment load decreased with discharge, but reached an asymptote of 5 to 10% at flows 10 to 20 times the mean annual flows. Although larger rivers in this region exhibit high sediment yields (up to 3600 Mg km -2  yr -1 ), mainly attributed to high rates of uplift, mass movement, and timber harvest, the small pristine streams in this study have sediment yields of only 8 to 100 Mg km -2  yr -1 . Because the current extent of old-growth redwood stands is less than 5% of its pre-European-settlement distribution, the present organic carbon signature in suspended sediment loads in this region is likely different from that in the early 20th century. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

California↗

USGS2021

Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone

Endocrine-disrupting chemicals can cause transcriptomic changes that may disrupt biological processes associated with reproductive function including metabolism, transport, and cell growth. We investigated effects from in ovo and dietary exposure to 17β-trenbolone (at 0, 1, and 10 ppm) on the Japanese quail ( Coturnix japonica ) hepatic transcriptome. Our objectives were to identify differentially expressed hepatic genes, assess perturbations of biological pathways, and examine sex- and developmental stage–related differences. The number of significantly differentially expressed genes was higher in embryos than in adults. Male embryos exhibited greater differential gene expression than female embryos, whereas in adults, males and females exhibited similar numbers of differentially expressed genes (>2-fold). Vitellogenin and apovitellenin-1 were up-regulated in male adults exposed to 10 ppm 17β-trenbolone, and these birds also exhibited indications of immunomodulation. Functional grouping of differentially expressed genes identified processes including metabolism and transport of biomolecules, enzyme activity, and extracellular matrix interactions. Pathway enrichment analyses identified as perturbed peroxisome proliferator–activated receptor pathway, cardiac muscle contraction, gluconeogenesis, growth factor signaling, focal adhesion, and bile acid biosynthesis. One of the primary uses of 17β-trenbolone is that of a growth promoter, and these results identify effects on mechanistic pathways related to steroidogenesis, cell proliferation, differentiation, growth, and metabolism of lipids and proteins.

Environmental Toxicology and Chemistry↗

USGS1990

Toxicity of organic selenium in the diet to chinook salmon

The toxicity of two organoselenium diets was evaluated in 90- to 120-d partial life cycle tests with two life stages of chinook salmon ( Oncorhynchus tshawytscha Walbaum). One of the diets contained fish meal made from high-selenium mosquitofish ( Gambusia affinis Baird and Girard) collected from the selenium-laden San Luis Drain, California (here termed SLD diet) and the other contained meal made from low-selenium mosquitofish (collected from a reference site) fortified with selenomethionine. A 90-d study was conducted with swim-up larvae in a water-simulating dilution of San Luis Drain water in a standardized fresh water; and a 120-d study was conducted with fingerlings 70-mm long in a water of similar quality but prepared with a standardized brackish water. After 90 d of exposure in the freshwater study, survival was reduced in fish fed ≥9.6 μg Se/g of either diet, and growth was reduced in fish fed ≥5.3 μg Se/g of SLD diet or ≥18.2 μg Se/g of selenomethionine diet. Reduced fish growth, whole-body concentrations of selenium and survival were strongly correlated to concentrations of selenium in both diets. After 120 d of exposure in the brackish-water study, survival was unaffected but growth was reduced in fish fed ≥18.2 μg Se/g of SLD diet or 35.4 μg Se/g of selenomethionine diet. After 120 d of dietary exposure, survival during a 10-d seawater challenge test was reduced in fish fed 35.4 μg Se/g of either diet. In this second dietary study, concentration—response relations were observed in both dietary treatments between the dietary concentrations of selenium and all three characteristics — fish growth, whole-body concentrations of selenium and survival in seawater.

Environmental Toxicology and Chemistry↗

USGS2020

Population and harvest dynamics of midcontinent sandhill cranes

Sandhill cranes ( Antigone canadensis ) inhabiting the midcontinent of North America have been hunted since the 1960s under management goals of maintaining abundance, retaining geographic distribution, and maximizing sustainable harvest. Some biologists have raised concerns regarding harvest sustainability because sandhill cranes have lower reproductive rates than other game birds. We summarized demographic information in an age-structured matrix model to better understand population dynamics and harvest. Population indices and recovered harvest since the early 1980s suggest midcontinent sandhill cranes have experienced an average long-term annual growth of 0.9%; meanwhile, harvest has increased 1.8% annually. We found that adult survival and recruitment rates estimated from field data required modest adjustments (1-3%) so that model-derived growth rates matched growth estimated from a long-term survey (0.887 adult survival and 0.199 females per breeding female). Considering 0.9% long-term annual growth, sandhill cranes could be harvested at a rate of 6.6% if harvest was additive to natural mortality (assumed to be 0.05) or 11.3% if harvest and natural mortality was compensatory. Life-history characteristics for long-lived organisms and demographic evidence suggested that hunter harvest was primarily additive. Differential harvest rates of segments of midcontinent sandhill cranes derived from differential exposure to hunting suggested potentially unsustainable harvest for greater sandhill cranes ( A. c. tabida ) from 2 breeding segments. Overall, demographic evidence suggests that the harvest of midcontinent sandhill cranes has been managed sustainably. Monitoring activities that reduce nuisance variation and estimate vital and harvest rates by subspecies would support continued management of sandhill cranes that are of great interest to hunters and bird watchers.

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