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At least 1,729 records · Page 96Linked to original sources
USGS2001

Fish species and community distributions as proxies for sea-floor habitat distributions: the Stellwagen Bank National Marine Sanctuary example (northwest Atlantic, Gulf Of Maine)

Defining the habitats of fishes and associated fauna on outer continental shelves is problematic given the paucity of data on the actual types and distributions of seafloor habitats. However many regions have good data on the distributions of fishes from resource surveys or catch statistics because of the economic importance of the fisheries. Fish distribution data (species or communities) have been used as a proxy for the distribution of habitats to develop precautionary conservation strategies for habitat protection (e.g., marine protected areas, fishing gear restrictions). In this study we assessed the relationships between the distributions of fish communities and species derived from trawl survey data with the spatial distribution of sediment types determined by sampling and acoustic reflectance derived from multibeam sonar surveys in Stellwagen Bank National Marine Sanctuary. Fish communities were correlated with reflectance values but all communities did not occur in unique sediment types. This suggests that use of community distributions as proxies for habitats should include the caveat that a greater number of communities within an area could indicate a greater range of habitat types. Single species distributions showed relationships between abundance and reflectance values. Trawl catches with low abundances had wide variations in reflectance values while those with high abundances had narrower ranges indicating habitat affinities. Significant non-random frequency-dependent relationships were observed for 17 of 20 species although only 12 of 20 species had significant relationships based on rank correlation. These results suggest that species distributions based on trawl survey data can be used as proxies for the distribution of seafloor habitats. Species with known habitat associations can be used to infer habitat requirements of co-occurring species and can be used to identify a range of habitat types.

Massachusetts↗
USGS2001

Microsatellite DNA variation Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) and cross-species amplification the Acipenseridae

O verharvest and habitat alteration have led to a collapse of most commercial Atlantic sturgeon( Acipenser oxyrinchus oxyrinchus )fisheries while pushing the species to rarity or extirpation in most of its historical range. A biologically sound conservation program for this species requires knowledge of its genetic diversity and of the evolutionary relationships among geographic populations. To address these research needs, six microsatellite loci were isolated from A. o. oxyrinchus . Pedigree analysis suggested that all are inherited in a codominant Mendelian pattern. The six loci were tested in ten additional sturgeon species from three genera and three apparent ploidy levels (4n, 8n, 16n). Approximately 70% of successful locus-species amplifications were polymorphic. Polysomy was observed most often in 8n and 16n species. Genetic diversity and population structure of A. o. oxyrinchus were assayed using three polymorphic Aox markers and four markers developed from lake sturgeon ( A. fulvescens ). A. o. oxyrinchus were sampled from the Altamaha River, Georgia, USA north to the St. Lawrence River, Quebec, Canada. Gulf sturgeon, A. o. desotoi , were sampled from the Suwannee River, Florida, USA, to assess differentiation between the subspecies. Seventy-seven alleles were observed to segregate into unique multilocus genotypes for each of the 392 individuals assayed. Mean diversity was greatest in the Chesapeake Bay (9.7 alleles per locus) and Delaware River (7.4 alleles per locus) collections, and lowest in the St. Lawrence River (4.6 alleles per locus). Mean heterozygosity across seven loci ranged from 44.3% (St. Lawrence River) to 62.6% (Altamaha River). Significant allelic heterogeneity was observed in 82% of pairwise comparisons as well as a global test (p < 0.0001) for A. o. oxyrinchus collections. Genetic distance suggests the presence of at least six subpopulations in A. o. oxyrinchus : St. Lawrence River, St. John River, Hudson River, Delaware River, Albemarle Sound, and Altamaha River. Genetic and geographic distances were positively correlated (r = 0.57, p < 0.03) among A. o. oxyrinchus , suggesting isolation by distance and philopatry. Hierarchical gene diversity analysis indicated significant genetic population structure at every level. Maximum likelihood assignment tests correctly assigned individual fish to collection with a high rate of success (mean = 87.5%); this and other lines of evidence indicated that the Chesapeake Bay collection represents a mixed population of sub-adult sturgeon from northern and southern Atlantic coast populations. Population structure was correlated with that suggested by earlier mitochondrial (mt) DNA analyses. Significant diversity was observed between two Canadian populations from which only a single mt DNA haplotype has been reported.

Conservation Genetics↗
USGS2004

A comparison of genetic ariation between an anadromous steelhead, Oncorhynchus mykiss , population and seven derived populations sequestered in freshwater for 70 years

In 1926 cannery workers from the Wakefield Fisheries Plant at Little Port Walter in Southeast Alaska captured small trout, Oncorhynchus mykiss , from a portion of Sashin Creek populated with a wild steelhead (anadromous O. mykiss ) run. They planted them into Sashin Lake which had been fishless to that time and separated from the lower stream by two large waterfalls that prevented upstream migration of any fish. In 1996 we sampled adult steelhead from the lower creek and juvenile O. mykiss from an intermediate portion of the creek, Sashin Lake, and five lakes that had been stocked with fish from Sashin Lake in 1938. Tissue samples from these eight populations were compared for variation in: microsatellite DNA at 10 loci; D-loop sequences in mitochondrial DNA; and allozymes at 73 loci known to be variable in steelhead. Genetic variability was consistently less in the Sashin Lake population and all derived populations than in the source anadromous population. The cause of this reduction is unknown but it is likely that very few fish survived to reproduce from the initial transplant in 1926. Stockings of 50–85 fish into five other fishless lakes in 1938 from Sashin Lake did not result in a similar dramatic reduction in variability. We discuss potential explanations for the observed patterns of genetic diversity in relation to the maintenance of endangered anadromous O. mykiss populations in freshwater refugia.

Alaska↗
USGS2011

Toward a community coastal sediment transport modeling system: the second workshop

Models for transport and the long-term fate of particles in coastal waters are essential for a variety of applications related to commerce, defense, public health, and the quality of the marine environment. Examples include: analysis of waste disposal and transport and the fate of contaminated materials; evaluation of burial rates for naval mines or archaeological artifacts; prediction of water-column optical properties; analysis of transport and the fate of biological particles; prediction of coastal flooding and coastal erosion; evaluation of impacts of sea-level or wave-climate changes and coastal development; planning for construction and maintenance of navigable waterways; evaluation of habitat for commercial fisheries; evaluation of impacts of natural or anthropogenic changes in coastal conditions on recreational activities; and design of intakes and outfalls for sewage treatment, cooling systems, and desalination plants.

Eos, Transactions, American Geophysical Union↗
USGS2007

Coralline alga reveals first marine record of subarctic North Pacific climate change

While recent changes in subarctic North Pacific climate had dramatic effects on ecosystems and fishery yields, past climate dynamics and teleconnection patterns are poorly understood due to the absence of century-long high-resolution marine records. We present the first 117-year long annually resolved marine climate history from the western Bering Sea/Aleutian Island region using information contained in the calcitic skeleton of the long-lived crustose coralline red alga Clathromorphum nereostratum, a previously unused climate archive. The skeletal ??18O-time series indicates significant warming and/or freshening of surface waters after the middle of the 20th century. Furthermore, the time series is spatiotemporally correlated with Pacific Decadal Oscillation (PDO) and tropical El Nio??-Southern Oscillation (ENSO) indices. Even though the western Bering Sea/Aleutian Island region is believed to be outside the area of significant marine response to ENSO, we propose that an ENSO signal is transmitted via the Alaskan Stream from the Eastern North Pacific, a region of known ENSO teleconnections. Copyright 2007 by the American Geophysical Union.

Geophysical Research Letters↗
USGS2011

Rising sea level may cause decline of fringing coral reefs

Coral reefs are major marine ecosystems and critical resources for marine diversity and fisheries. These ecosystems are widely recognized to be at risk from a number of stressors, and added to those in the past several decades is climate change due to anthropogenically driven increases in atmospheric concentrations of greenhouse gases. Most threatening to most coral reefs are elevated sea surface temperatures and increased ocean acidity [e.g., Kleypas et al., 1999; Hoegh-Guldberg et al., 2007], but sea level rise, another consequence of climate change, is also likely to increase sedimentary processes that potentially interfere with photosynthesis, feeding, recruitment, and other key physiological processes (Figure 1). Anderson et al. [2010] argue compellingly that potential hazardous impacts to coastlines from 21st-century sea level rise are greatly underestimated, particularly because of the rapid rate of rise. The Intergovernmental Panel on Climate Change estimates that sea level will rise in the coming century (1990–2090) by 2.2–4.4 millimeters per year, when projected with little contribution from melting ice [Meehl et al., 2007]. New studies indicate that rapid melting of land ice could substantially increase the rate of sea level rise [Grinsted et al., 2009; Milne et al., 2009].

Eos, Transactions, American Geophysical Union↗
USGS2020

A classification of streamflow patterns across the coastal Gulf of Alaska

Streamflow controls many freshwater and marine processes, including salinity profiles, sediment composition, fluxes of nutrients, and the timing of animal migrations. Watersheds that border the Gulf of Alaska (GOA) comprise over 400,000 km 2 of largely pristine freshwater habitats and provide ecosystem services such as reliable fisheries for local and global food production. Yet no comprehensive watershed-scale description of current temporal and spatial patterns of streamflow exists within the coastal GOA. This is an immediate need because the spatial distribution of future streamflow patterns may shift dramatically due to warming air temperature, increased rainfall, diminishing snowpack, and rapid glacial recession. Our primary goal was to describe variation in streamflow patterns across the coastal GOA using an objective set of descriptors derived from flow predictions at the downstream-most point within each watershed. We leveraged an existing hydrologic runoff model and Bayesian mixture model to classify 4,140 watersheds into 13 classes based on seven streamflow statistics. Maximum discharge timing (annual phase shift) and magnitude relative to mean discharge (amplitude) were the most influential attributes. Seventy-six percent of watersheds by number showed patterns consistent with rain or snow as dominant runoff sources, while the remaining watersheds were driven by rain-snow, glacier, or low-elevation wetland runoff. Streamflow classes exhibited clear mechanistic links to elevation, ice coverage, and other landscape features. Our classification identifies watersheds that might shift streamflow patterns in the near future and, importantly, will help guide the design of studies that evaluate how hydrologic change will influence coastal GOA ecosystems.

Alaska↗
USGS2022

Reservoir attributes display cascading spatial patterns along river basins

Considering reservoirs as linear fragments in a basin's river network could improve understanding, predictability, and management efficiency. We looked for general cascading spatial patterns across five categories of reservoir attributes: land cover, morphology and hydrology, fish habitat, fish assemblages, and fisheries. Attributes were pulled from various databases for large reservoirs (>100 ha) located in the United States. 16 widely distributed river basins, each including a minimum of 15 large reservoirs, were selected for analysis. Using analysis of covariance with basin as the class variable, we tested each attribute as a linear function of catchment area, which is an index of reservoir position in the basin. The majority of reservoir attributes displayed log-linear patterns as catchment area increased, indicating that reservoirs act as members of a larger network just as river reaches do. Several patterns were detected including attributes with no apparent lengthwise arrangement along the basin; cascading spatial patterns in which attributes increase or decrease from upstream to downstream within a basin; and attributes that increase with catchment area in some basins, decrease in others, or may simply remain constant throughout the basin. We conclude that each pattern may have different implications for management, and that the effectiveness with which most management activities influence reservoirs is likely to increase or decrease along river basins.

Water Resources Research↗
USGS2024

Predicting characteristic length scales of barrier island segmentation in microtidal environments

Segmented barrier islands can be found in regions with small tidal ranges. In contrast to tidally dominated barriers, where inlet dynamics are thought to control island length scales, the controls on barrier island length scales in wave-dominated environments have not been quantified. These microtidal barriers typically have a curved shoreline, suggesting the influence of wave-driven alongshore sediment transport. Microtidal barriers are also typically hydrodynamically isolated from one another, as weak tidal flows limit interactions between adjoining barriers. To better understand the controls on and scales of barrier segmentation in the relative absence of tides, here we develop a theoretical framework to estimate the alongshore length scales at which a barrier will either breach or heal following a disturbance in the barrier morphology. The non-dimensional framework compares the timescales of overwash (advective) and alongshore sediment transport (diffusive) processes along barrier island chains. We then apply this framework to modern barrier islands in the microtidal Gulf of Mexico using wave hindcast data and the lengths, widths, heights, and lagoon depths measured from remotely sensed geospatial data and topobathymetric data. We find that most of these barriers are currently longer than their critical length scale, often as a result of coastal restoration efforts. Our critical length scale analysis suggests that most of the Gulf of Mexico barriers are vulnerable to segmentation despite coastal restoration efforts intended to protect fisheries and the mainland coasts.

Florida, Louisiana, Mississippi↗
USGS1990

Residual currents and long-term transport

Estuaries, bays, and contiguous coastal seas of the world are the most valuable and yet most vulnerable marine ecosystems. For centuries, society has placed enormous value on coastal areas for living, working, and recreation. In nearly all regions of the world, the largest population is distributed along the coastlines. The marine ecosystems provide food, shelter, and spawning grounds for fisheries, and refuge and sanctuary for wildlife. Dramatic increases in the population living in coastal regions have changed the pattern of land use and the movement of sediments. Obviously, these changes have not come without a price. Accompanying the coastal population increase is competition for the use of estuarine and coastal resources: the diversion of fresh water for irrigation and the discharge of waste water into these systems. The changing patterns of water use have resulted in deterioration of water quality, and in irreversible impacts on many marine ecosystems. All of these alterations directly affect the economic development and the quality of life in adjacent regions.

Book↗
USGS2000

Effect of stream channel size on the delivery of nitrogen to the Gulf of Mexico

An increase in the flux of nitrogen from the Mississippi river during the latter half of the twentieth century has caused eutrophication and chronic seasonal hypoxia in the shallow waters of the Louisiana shelf in the northern Gulf of Mexico. This has led to reductions in species diversity, mortality of benthic communities and stress in fishery resources. There is evidence for a predominantly anthropogenic origin of the increased nitrogen flux, but the location of the most significant sources in the Mississippi basin responsible for the delivery of nitrogen to the Gulf of Mexico have not been clearly identified, because the parameters influencing nitrogen-loss rates in rivers are not well known. Here we present an analysis of data from 374 US monitoring stations, including 123 along the six largest tributaries to the Mississippi, that shows a rapid decline in the average first-order rate of nitrogen loss with channel size-from 0.45 day-1 in small streams to 0.005 day-1 in the Mississippi river. Using stream depth as an explanatory variable, our estimates of nitrogen-loss rates agreed with values from earlier studies. We conclude that the proximity of sources to large streams and rivers is an important determinant of nitrogen delivery to the estuary in the Mississippi basin, and possibly also in other large river basins.

Nature↗
USGS2024

Asymmetric impacts of climate change on thermal habitat suitability for inland lake fishes

Climate change is altering the thermal habitats of freshwater fish species. We analyze modeled daily temperature profiles from 12,688 lakes in the US to track changes in thermal habitat of 60 lake fish species from different thermal guilds during 1980-2021. We quantify changes in each species’ preferred days, defined as the number of days per year when a lake contains the species’ preferred temperature. We find that cooler-water species are losing preferred days more rapidly than warmer-water species are gaining them. This asymmetric impact cannot be attributed to differences in geographic distribution among species; instead, it is linked to the seasonal dynamics of lake temperatures and increased thermal homogenization of the water column. The potential advantages of an increase in warmer-water species may not fully compensate for the losses in cooler-water species as warming continues, emphasizing the importance of mitigating climate change to support effective freshwater fisheries management.

Arkansas, Illinois, Indiana, Iowa, Michigan, Minne↗
USGS2026

An Antarctic ecosystem value index to quantify ecological value across trophic levels and over time

The Southern Ocean around Antarctica is one of the fastest changing regions on the planet and an emerging resource frontier for fisheries. Here, we present the Antarctic Ecosystem Value Index created by merging ecosystem information across food web trophic levels, from phytoplankton to fish and penguins, to quantify the ecological value of marine areas around the Antarctic continent. We find that coastal polynyas - areas of reduced sea-ice - have Index values 31–72% higher than surrounding areas, suggesting that these areas are biologically valuable hot spots for a number of ice-dependent Antarctic Species. Using output from an Earth system model to generate future projections of the Index, we find that high-value locations, often within polynyas, are likely to continue to be valuable throughout the 21st century despite environmental changes. The Antarctic Ecosystem Value Index indicates that penguins lose importance as their habitat becomes increasingly unsuitable, so protecting high-value habitat areas may be critical for these species. This study also shows that while many high-value Index areas are within existing or proposed Marine Protected Areas, there are several opportunities for adopting additional protection, particularly in East Antarctica and the Amundsen Sea.

Nature Communications↗
USGS2026

Spatially referenced watershed models for the binational Red–Assiniboine River Basin: Bayesian vs frequentist comparison

Excess nutrient loading remains a leading cause of declining water quality in lakes, estuaries, and coastal waters worldwide, with global economic costs of US$200 billion – US$2 trillion annually from impacts on fisheries, tourism, freshwater resources, and water treatment. Our study focuses on total phosphorus (TP) in Lake Winnipeg and its binational Red-Assiniboine River Basin, where nutrient inputs have degraded water quality and increased cyanobacterial blooms. These changes pose ecological, public health, and economic risks. We applied a spatially referenced watershed model with a hybrid statistical-mechanistic structure partitioning annual nutrient loads into land-use export, land-to-water delivery, and in-reservoir decay. Bayesian and traditional frequentist model calibrations were compared. In the frequentist model, coefficients for agricultural inputs, forests /wetlands, stream channels, precipitation, and reservoir losses were statistically significant, whereas coefficient for wastewater was not. In contrast, all variables were successfully calibrated using the Bayesian approach. Model results delineate TP-export hotspots across the basin, showing that 54–62% of TP originates from the U.S., with agricultural sources ranging 62–72%—highlighting the importance of agriculture-focused Best Management Practices. Given the global relevance of nutrient-driven water-quality challenges, our results highlight Bayesian calibration for robust risk assessment and adaptive nutrient management.

Red–Assiniboine River Basin↗
USGS2023

CreelCat, a Catalog of United States Inland Creel and Angler Survey Data

The United States Inland Creel and Angler Survey Catalog (CreelCat) contains a national compilation of angler and creel survey data collected by natural resource management agencies across the United States (including Washington, D.C. and Puerto Rico). These surveys are used to help inform the management of recreational fisheries, by collecting information about anglers including what they are catching and harvesting, the amount of effort they expend, their angling preferences, and demographic information. As of May 1, 2023, CreelCat houses over 14,729 surveys from 33 states, Puerto Rico, and Washington, D.C., comprising 235 data fields across 8 tables. These tables contain 235,015 records of fish catch and harvest metrics, 27,250 angler preference metrics, 14,729 records of survey characteristics, 13,576 records of effort metrics, and 409 records of angler demographics. Though individual creel surveys are often deployed to meet local science and management objectives, creel data aggregated across jurisdictions has the potential to address larger scale research and management needs.

Scientific Data↗
USGS2019

A novel host-adapted strain of Salmonella Typhimurium causes disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific.

Salmonella spp. are frequently shed by wildlife including turtles, but S. enterica subsp. enterica serovar Typhimurium or lesions associated with Salmonella are rare in turtles. Between 1996 and 2016, we necropsied 127 apparently healthy pelagic olive ridley turtles ( Lepidochelys olivacea ) that died from drowning bycatch in fisheries and 44 live or freshly dead stranded turtles from the west coast of North and Central America and Hawaii. Seven % (9/127) of pelagic and 47% (21/44) of stranded turtles had renal granulomas associated with S. Typhimurium. Stranded animals were 12 times more likely than pelagic animals to have Salmonella -induced nephritis suggesting that Salmonella may have been a contributing cause of stranding. S. Typhimurium was the only Salmonella serovar detected in L. olivacea , and phylogenetic analysis from whole genome sequencing showed that the isolates from L. olivacea formed a single clade distinct from other S. Typhimurium. Molecular clock analysis revealed that this novel clade may have originated as recently as a few decades ago. The phylogenetic lineage leading to this group is enriched for non-synonymous changes within the genomic area of Salmonella pathogenicity island 1 suggesting that these genes are important for host adaptation.

California, Hawaii, Oregon, Washington↗
USGS2021

Ecosystem response persists after a prolonged marine heatwave

Some of the longest and most comprehensive marine ecosystem monitoring programs were established in the Gulf of Alaska following the environmental disaster of the Exxon Valdez oil spill over 30 years ago. These monitoring programs have been successful in assessing recovery from oil spill impacts, and their continuation decades later has now provided an unparalleled assessment of ecosystem responses to another newly emerging global threat, marine heatwaves. The 2014–2016 northeast Pacific marine heatwave (PMH) in the Gulf of Alaska was the longest lasting heatwave globally over the past decade, with some cooling, but also continued warm conditions through 2019. Our analysis of 187 time series from primary production to commercial fisheries and nearshore intertidal to offshore oceanic domains demonstrate abrupt changes across trophic levels, with many responses persisting up to at least 5 years after the onset of the heatwave. Furthermore, our suite of metrics showed novel community-level groupings relative to at least a decade prior to the heatwave. Given anticipated increases in marine heatwaves under current climate projections, it remains uncertain when or if the Gulf of Alaska ecosystem will return to a pre-PMH state.

Alaska↗
USGS2023

Evolutionary and ecological correlates of thiaminase in fishes

Thiamine (vitamin B 1 ) is required by all living organisms in multiple metabolic pathways. It is scarce in natural systems, and deficiency can lead to reproductive failure, neurological issues, and death. One major cause of thiamine deficiency is an overreliance on diet items containing the enzyme thiaminase. Thiaminase activity has been noted in many prey fishes and linked to cohort failure in salmonid predators that eat prey fish with thiaminase activity, yet it is generally unknown whether evolutionary history, fish traits, and/or environmental conditions lead to production of thiaminase. We conducted literature and GenBank BLAST sequence searches to collect thiaminase activity data and sequence homology data in expressed protein sequences for 300 freshwater and marine fishes. We then tested whether presence or absence of thiaminase could be predicted by evolutionary relationships, trophic level, omega-3 fatty acid concentrations, habitat, climate, invasive potential, and body size. There was no evolutionary relationship with thiaminase activity. It first appears in Class Actinoptergyii (bony ray-finned fishes) and is present across the entire Actinoptergyii phylogeny in both primitive and derived fish orders. Instead, ecological factors explained the most variation in thiaminase: fishes were more likely to express thiaminase if they fed closer to the base of the food web, were high in polyunsaturated fatty acids, lived in freshwater, and were from tropical climates. These data provide a foundation for understanding sources of thiaminase leading to thiamine deficiency in fisheries and other organisms, including humans that eat uncooked fish.

Scientific Reports↗