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USGS2018

Groundwater flow and heat transport for systems undergoing freeze-thaw: Intercomparison of numerical simulators for 2D test cases

In high-elevation, boreal and arctic regions, hydrological processes and associated water bodies can be strongly influenced by the distribution of permafrost. Recent field and modeling studies indicate that a fully-coupled multidimensional thermo-hydraulic approach is required to accurately model the evolution of these permafrost-impacted landscapes and groundwater systems. However, the relatively new and complex numerical codes being developed for coupled non-linear freeze-thaw systems require verification. This issue is addressed by means of an intercomparison of thirteen numerical codes for two-dimensional test cases with several performance metrics (PMs). These codes comprise a wide range of numerical approaches, spatial and temporal discretization strategies, and computational efficiencies. Results suggest that the codes provide robust results for the test cases considered and that minor discrepancies are explained by computational precision. However, larger discrepancies are observed for some PMs resulting from differences in the governing equations, discretization issues, or in the freezing curve used by some codes.

Advances in Water Resources↗

USGS2015

Synthesis on Quaternary aeolian research in the unglaciated eastern United States

Late-middle and late Pleistocene, and Holocene, inland aeolian sand and loess blanket >90,000 km 2 of the unglaciated eastern United States of America (USA). Deposits are most extensive in the Lower Mississippi Valley (LMV) and Atlantic Coastal Plain (ACP), areas presently lacking significant aeolian activity. They provide evidence of paleoclimate intervals when wind erosion and deposition were dominant land-altering processes. This study synthesizes available data for aeolian sand deposits in the LMV, the Eastern Gulf Coastal Plain (EGCP) and the ACP, and loess deposits in the Middle Atlantic Coastal Plain (MACP). Data indicate: (a) the most recent major aeolian activity occurred in response to and coincident with growth and decay of the Laurentide Ice Sheet (LIS); (b) by &sim;40 ka, aeolian processes greatly influenced landscape evolution in all three regions; (c) aeolian activity peaked in OIS2; (d) OIS3 and OIS2 aeolian records are in regional agreement with paleoecological records; and (e) limited aeolian activity occurred in the Holocene (EGCP and ACP). Paleoclimate and atmospheric-circulation models (PCMs/ACMs) for the last glacial maximum (LGM) show westerly winter winds for the unglaciated eastern USA, but do not resolve documented W and SW winds in the SEACP and WNW and N winds in the MACP. The minimum areal extent of aeolian deposits in the EGCP and ACP is &sim;10,000 km 2 . For the LMV, it is >80,000 km 2 . Based on these estimates, published PCMs/ACMs likely underrepresent the areal extent of LGM aeolian activity, as well as the extent and complexity of climatic changes during this interval.

Aeolian Research↗

USGS2026

The Sand AbrasioN Device for Aeolian Research (SANDAR): A new experimental device for investigating how wind transport affects sand on Earth and Mars

On Earth and Mars, aeolian transport causes sand grains to become abraded, resulting in mineralogic and textural changes. Understanding how sands evolve, or mature, with transport via experimental studies is important for understanding the origins, geologic history, and cycling of sediments, as well as dust production. Previous experimental works have used a variety of methods to simulate aeolian transport in the laboratory, but practical limitations and similitude concerns have limited such research. Here, we present and validate the Sand AbrasioN Device for Aeolian Research (SANDAR), a modified air mill that uses pressurized air to circulate sand around a small abrasion chamber, simulating the effects of aeolian transport. This device is re-circulating to simulate long-distance transport, and it allows for repeated analyses of well-constrained sediment samples, revealing their evolution over time. It is compatible with the grain sizes (74–500 μm) and grain impact velocities (∼0.6–3.7 m/s) typically expected for natural aeolian environments, and is also adaptable for diverse applications simulating different wind conditions. We show that the SANDAR achieves similitude of kinetic energy with respect to saltating sand on both Earth and Mars. SEM and optical microscope imaging reveal that the SANDAR produces microtextures on the surfaces of sand grains similar to those found with natural aeolian transport, demonstrating that it effectively simulates the mechanical effects of aeolian processes. Thus, the SANDAR is a valid tool for use in experimental research to improve our understanding of sedimentary processes across the Solar System.

Aeolian Research↗

USGS2010

Sustained increase in food supplies reduces broodmate aggression in black-legged kittiwakes

The amount of food ingested by chicks has often been suggested as being the main proximate factor controlling broodmate aggression in facultatively siblicidal species. Although several experiments have demonstrated that short-term food deprivation causes a temporary increase in aggression, no study has, to our knowledge, experimentally manipulated overall food supplies and considered long-term effects on chick behaviour and life history traits. We provided supplemental food to breeding pairs of black-legged kittiwakes, Rissa tridactyla , over an entire breeding season and compared the aggressive behaviour of their chicks with that of chicks of control pairs. Control A-chicks (first to hatch) showed more frequent and intense aggression than their experimental counterparts. Furthermore, the more A-chicks begged and the lower their growth rate the more aggressive they were. The consequences of increased aggression for B-chicks (second to hatch) were lower begging rate, lower growth rate and lower survival. We thus provide evidence that a sustained increase in food availability affects broodmate aggression and chick survival at the nest and we discuss the various proximate and ultimate causes involved in the evolution of broodmate aggression.

Alaska↗

USGS2019

Within-group relatedness and patterns of reproductive sharing and cooperation in the tropical chestnut-crested yuhina

In cooperatively breeding animals, genetic relatedness among group members often determines the extent of reproductive sharing, cooperation and competition within a group. Studies of species for which cooperative behaviour is not entirely based on kinship are key for understanding the benefits favouring the evolution and maintenance of cooperative breeding among nonrelatives. In the cooperatively breeding chestnut-crested yuhina, Yuhina everetti , a songbird endemic to Borneo, we tested whether unrelated helpers are more likely to gain parentage than are related helpers consistent with the hypothesis that inbreeding risk constrains reproduction by related helpers. We also examined whether related or unrelated helpers provision broods more because of differences in their potential indirect or direct fitness benefits of helping. Kin structure of breeding groups (breeding pair and up to eight helpers of both sexes, median = 2 helpers, 96% of 57 pairs had helpers) based on genetic analysis was mixed; 48% of 76 breeder/helper dyads were first-order (26%) or second-order (22%) relatives of one or both members of the breeding pair, and 52% were nonrelatives. Only unrelated male and female helpers gained parentage, and helpers did not differ in their provisioning rate according to their relatedness to the broods. We documented quasi-parasitism or co-breeding by female helpers in 14% of 29 broods and extrapair paternity by male helpers in 21% of 47 broods. This rate of extrapair paternity is relatively high among the few tropical species examined but fit with predictions for mixed-kin groups where inbreeding is avoided. These findings support the emerging pattern for cooperative breeding in birds with mixed-kin groups, wherein unrelated helpers are more likely to gain parentage than are related helpers and helping effort is not necessarily predicted by kinship.

Animal Behaviour↗

USGS2006

Geochemical patterns of arsenic-enriched ground water in fractured, crystalline bedrock, Northport, Maine, USA

High mean As concentrations of up to 26.6 ??mol/L (1990 ??g/L) occur in ground water collected from a fractured-bedrock system composed of sulfidic schist with granitic to dioritic intrusions. Sulfides in the bedrock are the primary source of the As in the ground water, but the presence of arsenopyrite in rock core retrieved from a borehole with As concentrations in the ground water barely above the detection limit of 2.0 ??mol/L, shows that there are complicating factors. Chemical analyses of water from 35 bedrock wells throughout a small watershed reveal spatial clustering of wells with high As concentrations. Stiff diagrams and box plots distinguish three distinct types; calcium-bicarbonate-dominated water with low As concentrations (CaHCO 3 type), sodium-bicarbonate-dominated water with moderately high As concentrations (NaHCO3 type), and calcium-bicarbonate-dominated water with very high As concentrations (High-As type). It is proposed that differences in recharge area and ground-water evolution, and possible bedrock composition difference are responsible for the chemical distinctions within the watershed. Lack of correlation of As concentrations with pH indicates that desorption of As is an insignificant control on As concentration. Correlations of As concentrations with Fe and redox parameters indicates that reductive dissolution of Fe(III) oxyhydroxides may play a role in the occurrence of high As concentrations in the NaHCO3 and High-As type water. The oxidation of sulfide minerals occurs within the ground-water system and is ultimately responsible for the existence of As in the ground water, but there is no correlation between As and SO4 concentrations, probably due to precipitation of Fe(III) oxyhydroxides and adsorption of As under oxidizing conditions. Crown Copyright ?? 2006 Published by Elsevier Ltd. All rights reserved.

Applied Geochemistry↗

USGS2007

New isotopic evidence for the origin of groundwater from the Nubian Sandstone Aquifer in the Negev, Israel

The geochemistry and isotopic composition (H, O, S, O sulfate , C, Sr) of groundwater from the Nubian Sandstone (Kurnub Group) aquifer in the Negev, Israel, were investigated in an attempt to reconstruct the origin of the water and solutes, evaluate modes of water–rock interactions, and determine mean residence times of the water. The results indicate multiple recharge events into the Nubian sandstone aquifer characterized by distinctive isotope signatures and deuterium excess values. In the northeastern Negev, groundwater was identified with deuterium excess values of ∼16‰, which suggests local recharge via unconfined areas of the aquifer in the Negev anticline systems. The δ 18 O H2O and δ 2 H values (−6.5‰ and −35.4‰) of this groundwater are higher than those of groundwater in the Sinai Peninsula and southern Arava valley (−7.5‰ and −48.3‰) that likewise have lower deuterium excess values of ∼10‰. Based on the geochemical differences between groundwater in the unconfined and confined zones of the aquifer, a conceptual geochemical model for the evolution of the groundwater in the Nubian sandstone aquifer has been reconstructed. The isotopic composition of shallow groundwater from the unconfined zone indicates that during recharge oxidation of pyrite to SO 4 ( δ 34 S SO4 ∼−13‰; δ 18 O SO4 ∼+7.7‰) and dissolution of CaCO 3 ( 87 Sr/ 86 Sr ∼0.70787; δ 13 C DIC = −3.7‰) occur. In the confined zone of the aquifer, bacterial SO 4 reduction removes a significant part of dissolved SO 4 2 - "> SO42- , thereby modifying its isotopic composition ( δ 34 S SO4 ∼−2‰; δ 18 O SO4 ∼+8.5‰) and liberating dissolved inorganic C that contains little or no radiocarbon ( 14 C-free) with low δ 13 C DIC values (<−12‰). In addition to local recharge, the Sr and S isotopic data revealed contribution of external groundwater sources to the Nubian Sandstone aquifer, resulting in further modifications of the groundwater chemical and isotopic signatures. In the northeastern Negev, it is shown that SO 4 -rich groundwater from the underlying Jurassic aquifer contributes significantly to the salt budget of the Nubian Sandstone aquifer. The unique chemical and isotopic composition of the Jurassic groundwater ( δ 34 S SO4 ∼ +14‰; δ 18 O SO4 ∼ 14‰; 87 Sr/ 86 Sr ∼0.70764) is interpreted as reflecting dissolution of Late Triassic marine gypsum deposits. In the southern Arava Valley the authors postulate that SO 4 -rich groundwater with distinctively high Br/Cl (3 × 10 −3 ) low 87 Sr/ 86 Sr (0.70734), and high δ 34 S SO4 values (+15‰) is derived from mixing with underlying brines from the Paleozoic units. The radiocarbon measurements reveal low 14 C activities (0.2–5.8 pmc) in both the northeastern Negev and southern Arava Valley. Taking into account dissolution of carbonate rocks and bacterial SO 4 reduction in the unconfined area, estimated mean residence times of groundwater in the confined zone in the northeastern Negev are on the order of 21–38 ka, which suggests recharge predominantly during the last glacial period. The 14 C signal in groundwater from the southern Arava Valley is equally low but due to evidence for mixing with external water sources the residence time estimates are questionable.

Applied Geochemistry↗

USGS2010

Distribution, behavior, and transport of inorganic and methylmercury in a high gradient stream

Concentrations of Hg remain elevated in physical and biological media of the South River (Virginia, USA), despite the cessation of the industrial use of Hg in its watershed nearly six decades ago, and physical characteristics that would not seem to favor Hg(II)-methylation. A 3-a study of inorganic Hg (IHg) and methylmercury (MeHg) was conducted in physical media (soil, sediment, surface water, porewater and soil/sediment extracts) to identify non-point sources, transport mechanisms, and potential controls on Hg(II)-methylation. Data collected from surface water and sediment indicate that the majority of the non-point sources of IHg to the South River are within the first 14. km downstream from the historic point source. Partitioning data indicate that particle bound IHg is introduced in this reach, releasing dissolved and colloidal bound IHg, which is transported downstream. Extraction experiments revealed that floodplain soils released a higher fraction of their IHg content in aqueous extractions than fine-grained sediment (FGS). Based on ultrafiltration [<5000 nominal molecular weight cutoff (NMWC)] the majority of soil IHg released was colloidal in nature, providing evidence for the continued evolution of IHg for Hg(II)-methylation from soil. Strong seasonal patterns in MeHg concentrations were observed in surface water and sediment. The highest concentrations of MeHg in surface water were observed at moderate temperatures, suggesting that other factors limit net Hg(II)-methylation. Seasonal changes in sediment organic content and the fraction of 1. N KOH-extractable THg were also observed and may be important factors in controlling net Hg(II)-methylation rates. Sulfate concentrations in surface water are low and the evidence suggests that Fe reduction may be an important Hg(II)-methylation process. The highest sediment MeHg concentrations were observed in habitats with large amounts of FGS, which are more prevalent in the upper half of the study area due to the lower hydrologic gradient and agricultural impacts. Past and present land use practices and other geomorphologic controls contribute to the erosion of banks and accumulation of fine-grained sediment in this section of the river, acting as sources of IHg. ?? 2010 Elsevier Ltd.

Applied Geochemistry↗

USGS2020

Natural attenuation can lead to environmental resilience in mine environment

Four streams flowing in the Iglesiente and Arburese mine districts (SW Sardinia, Italy), exploited for zinc (Zn) and lead (Pb) extraction from sulphides and secondary non-sulphide mineralization (calamine ores), have been studied combining investigations from the macroscale (hydrologic tracer techniques) to the microscale (X-ray powder diffraction, scanning electron microscopy, X-ray absorption spectroscopy). In the investigated area, concerns arise from release of metals to water during weathering of ore minerals and mine-waste. Specifically, Zn is observed at extremely high concentrations (10s of mg/L or more) in waters in some of the investigated catchments. The results from synoptic sampling campaigns showed marked differences of Zn loads, from 6.3 kg/day (Rio San Giorgio) to 2000 kg/day (Rio Irvi). Moreover, natural attenuation of metals was found to occur i) through precipitation of Fe compounds (Fe oxy/hydroxides and “green rust”), ii) by means of the authigenic formation of metal sulphides promoted by microbial sulphate reduction, iii) by metal intake in roots and stems of plants ( Phragmites australis and Juncus acutus ) and by immobilization in the rhizosphere, and iv) by cyanobacterial biomineralization processes that lead to formation of Zn-rich phases (hydrozincite and amorphous Zn-silicate) The biologically mediated natural processes that lead to significant abatement and/or reduction of metal loads, are the response of environmental systems to perturbations caused from mine activities, and can be considered part of the resilience of the system itself. The aim of this study is to understand the effect of these processes on the evolution of the studied systems towards more stable and, likely, resilient conditions, e.g. by limiting metal mobility and favoring the improvement of the overall quality of water. The understanding of how ecosystems adapt and respond to contamination, and which chemical and physical factors control these natural biogeochemical barriers, can help to plan effective remediation actions.

Sardinia↗

USGS2022

Factors Affecting Groundwater Quality Used for Domestic Supply in Marcellus Shale Region of North-Central and North-East Pennsylvania, USA

Factors affecting groundwater quality used for domestic supply within the Marcellus Shale footprint in north-central and north-east Pennsylvania are identified using a combination of spatial, statistical, and geochemical modeling. Untreated groundwater, sampled during 2011–2017 from 472 domestic wells within the study area, exhibited wide ranges in pH (4.5–9.3), total dissolved solids (TDS, 22–1960 mg/L), sodium (0.3–760 mg/L), chloride (0.3–1020 mg/L), bromide (<0.01–8.6 mg/L), and methane (<0.001–77 mg/L). The wells had depths ranging from 10 to 394 m; 69.5 percent were completed in sandstone bedrock, 19.3 percent in shale, 4.2 percent in siltstone, 4 percent in carbonate, and 3 percent in unconsolidated alluvial or glacial deposits. Groundwater quality in the Delaware River watershed, in the eastern part of the study area where Marcellus gas has not been developed, was similar to that in the Susquehanna, Allegheny, and Genesee River watersheds in the western part of the study area where natural gas production from Marcellus Shale has been ongoing since 2008. Most groundwaters were calcium/bicarbonate type with near-neutral pH; approximately 10 percent were sodium/bicarbonate and 1 percent were sodium/chloride types. Sodium-enriched waters, which were mostly from shale and siltstone aquifers, had the greatest frequency of elevated pH (>8.5) and elevated concentrations of TDS (>250 mg/L), bromide (>0.15 mg/L), methane (>7.0 mg/L), and lithium (>60 μg/L). Geochemical models indicate these characteristics could result from progressive mineral dissolution combined with cation exchange, plus mixing with locally important salinity sources, including as much as 0.7 percent Appalachian Basin brine and/or road-deicing salt. Multivariate correlation models suggest the observed variability in methane concentrations may be attributed to several environmental factors, such as geochemical evolution along groundwater flow paths, redox conditions, and/or mixing with saline groundwater or brine. Most samples having elevated methane were from shale aquifers, which were mainly in the Susquehanna River basin and had the greatest density of gas wells compared to other lithologies . Samples having elevated methane were also observed in the Delaware River watershed and other areas outside gas development. Isotopic compositions of methane for a subset of 39 samples (selected because of elevated methane) and relatively high ratios of methane to ethane in those samples indicated methane could be derived from microbial gas mixed with thermogenic gas that may have undergone degradation and/or fractionation during migration. The methods used in this study could be broadly applicable to understanding major factors affecting groundwater quality, particularly for explaining variations in ionic composition with pH and identifying sources of salinity and associated constituents (e.g. sodium, chloride, bromide, lithium, methane) that may have geogenic or anthropogenic origins.

Pennsylvania↗

USGS2025

Properties of solid bitumen formed during hydrous, anhydrous, and brine pyrolysis of oil shale: Implications for solid bitumen reflectance in source-rock reservoirs

Solid bitumen reflectance (BR o in %) is widely used as a thermal maturity proxy in source-rock reservoirs, yet solid bitumen texture and physical attributes may be affected by varying environmental constraints during its formation, e.g., water saturation, mineral catalysis, or salinity. Herein we investigated the development of solid bitumen properties during artificial maturation using three diverse (lacustrine to marine) oil shale samples containing abundant amorphous H-rich sedimentary organic matter (bituminite). The oil shales were treated via pyrolysis (320 °C, 72 h) using hydrous, anhydrous, and brine conditions, causing the development of a newly formed solid bitumen in the experiment residues from the thermal conversion of bituminite. The properties of the newly formed solid bitumen then were evaluated via geochemical screening tests, optical and electron microscopy, and infrared spectroscopy. Experimental residues also were treated via solvent extraction, allowing characterization of the effects of extraction on solid bitumen. Results showed that bituminite with higher resin and asphaltene components evolved to a solid bitumen with higher reflectance (as a percentage of the original value) when exposed to the same heat treatment, relative to bituminite with higher saturate and aromatic components. Aromatization of solid bitumen also was generally more pronounced in the presence of deionized water relative to anhydrous conditions, supporting prior observations. These results suggest the compositions of primary sedimentary organic matter, and the local concentration of water, affect the development of solid bitumen during thermal advance, potentially explaining the origin of multiple solid bitumen populations with varying reflectance in source-rock reservoir samples or in a single microscope field. Experiments using brine were inconclusive regarding enhanced/decreased aromatization, which could be attributed to the salinities of the brines used in the tests. Extraction of residues caused a consistent increase in BR o values, suggesting that migrating or expelled oils could cause an increase in BR o via natural solvation and absent an increase in temperature. This work provides insights into the development and evolution of BR o in source-rock reservoirs as a function of the composition of the original bituminite and changing environmental conditions, with potentially broad application for petroleum prospecting and resource estimation.

Colorado↗

USGS2014

Aquatic CAM photosynthesis: a brief history of its discovery

Aquatic CAM (Crassulacean Acid Metabolism) photosynthesis was discovered while investigating an unrelated biochemical pathway concerned with anaerobic metabolism. George Bowes was a significant contributor to this project early in its infancy. Not only did he provide me with some valuable perspectives on peer review rejections, but by working with his gas exchange system I was able to take our initial observations of diel fluctuations in malic acid to the next level, showing this aquatic plant exhibited dark CO2 uptake. CAM is universal in all aquatic species of the worldwide Lycophyta genus Isoetes and non-existent in terrestrial Isoetes. Outside of this genus aquatic CAM has a limited occurrence in three other families, including the Crassulaceae. This discovery led to fascinating adventures in the highlands of the Peruvian Andes in search of Stylites, a terrestrial relative of Isoetes. Stylites is a plant that is hermetically sealed from the atmosphere and obtains all of its carbon from terrestrial sources and recycles carbon through CAM. Considering the Mesozoic origin of Isoetes in shallow pools, coupled with the fact that aquatic Isoetes universally possess CAM, suggests the earliest evolution of CAM photosynthesis was most likely not in terrestrial plants.

Aquatic Botany↗

USGS2021

Atmospheric nitrogen deposition in the Chesapeake Bay watershed: A history of change

The Chesapeake Bay watershed has been the focus of pioneering studies of the role of atmospheric nitrogen (N) deposition as a nutrient source and driver of estuarine trophic status. Here, we review the history and evolution of scientific investigations of the role of atmospheric N deposition, examine trends from wet and dry deposition networks, and present century-long (1950–2050) atmospheric N deposition estimates. Early investigations demonstrated the importance of atmospheric deposition as an N source to the Bay, providing 25%–40% among all major N sources. These early studies led to the unprecedented inclusion of targeted decreases in atmospheric N deposition as part of the multi-stakeholder effort to reduce N loads to the Bay. Emissions of nitrogen oxides (NO x ) and deposition of wet nitrate, oxidized dry N, and dry ammonium (NH 4 + ) sharply and synchronously declined by 60%–73% during 1995–2019. These decreases largely resulted from implementation of Title IV of the 1990 Clean Air Act Amendments, which began in 1995. Wet NH 4 + deposition shows no significant trend during this period. The century-long atmospheric N deposition estimates indicate an increase in total atmospheric N deposition in the Chesapeake watershed from 1950 to a peak of ~15 kg N/ha/yr in 1979, trailed by a slight decline of <10% through the mid-1990s, and followed by a sharp decline of about 40% thereafter through 2019. An additional 21% decline in atmospheric N deposition is projected from 2015 to 2050. A comparison of the Potomac River and James River watersheds indicates higher atmospheric N deposition in the Potomac, likely resulting from greater emissions from higher proportions of agricultural and urban land in this basin. Atmospheric N deposition rose from 30% among all N sources to the Chesapeake Bay watershed in 1950 to a peak of 40% in 1973, and a decline to 28% by 2015. These data highlight the important role of atmospheric N deposition in the Chesapeake Bay watershed and present a potential opportunity for decreases in deposition to contribute to further reducing N loads and improving the trophic status of tidal waters.

New York, New Jersey, Delaware, Maryland, Pennsylv↗

USGS2014

Marine fog: a review

The objective of this review is to discuss physical processes over a wide range of spatial scales that govern the formation, evolution, and dissipation of marine fog. We consider marine fog as the collective combination of fog over the open sea along with coastal sea fog and coastal land fog. The review includes a history of sea fog research, field programs, forecasting methods, and detection of sea fog via satellite observations where similarity in radiative properties of fog top and the underlying sea induce further complexity. The main thrust of the study is to provide insight into causality of fog including its initiation, maintenance, and destruction. The interplay between the various physical processes behind the several stages of marine fog is among the most challenging aspects of the problem. An effort is made to identify this interplay between processes that include the microphysics of fog formation and maintenance, the influence of large-scale circulation and precipitation/clouds, radiation, turbulence (air-sea interaction), and advection. The environmental impact of marine fog is also addressed. The study concludes with an assessment of our current knowledge of the phenomenon, our principal areas of ignorance, and future lines of research that hold promise for advances in our understanding.

Atmospheric Research↗

USGS2013

Disease in a dynamic landscape: host behavior and wildfire reduce amphibian chytrid infection

Disturbances are often expected to magnify effects of disease, but these effects may depend on the ecology, behavior, and life history of both hosts and pathogens. In many ecosystems, wildfire is the dominant natural disturbance and thus could directly or indirectly affect dynamics of many diseases. To determine how probability of infection by the aquatic fungus Batrachochytrium dendrobatidis (Bd) varies relative to habitat use by individuals, wildfire, and host characteristics, we sampled 404 boreal toads ( Anaxyrus boreas boreas ) across Glacier National Park, Montana (USA). Bd causes chytridiomycosis, an emerging infectious disease linked with widespread amphibian declines, including the boreal toad. Probability of infection was similar for females and the combined group of males and juveniles. However, only 9% of terrestrial toads were infected compared to >30% of aquatic toads, and toads captured in recently burned areas were half as likely to be infected as toads in unburned areas. We suspect these large differences in infection reflect habitat choices by individuals that affect pathogen exposure and persistence, especially in burned forests where warm, arid conditions could limit Bd growth. Our results show that natural disturbances such as wildfire and the resulting diverse habitats can influence infection across large landscapes, potentially maintaining local refuges and host behaviors that facilitate evolution of disease resistance.

Montana↗

USGS2023

Geographic and taxonomic variation in adaptive capacity among mountain-dwelling small mammals: implications for conservation status and actions

Contemporary climate change is modifying the distribution, morphology, phenology, physiology, evolution, and interspecific interactions of species. Effects of climate change are mediated not only through the magnitude of change experienced (exposure) and an animal's sensitivity to such changes, but also through the ability of the population or species to adjust to climatic variability and change genetically, behaviorally, or spatially (via its distribution) (i.e., adaptive capacity; AC). Here, we used an attribute-based framework to systematically evaluate and compare the AC of American pikas ( Ochotona princeps ) against four other mountain-dwelling small mammals of North America to determine whether pikas are disproportionately vulnerable to climate change, as has been postulated. Unlike previous analyses, we also compared AC across O. princeps lineages and across three taxonomic (and thus, spatial) scales. Our results indicate that pikas have markedly lower adaptive capacity than all compared species except bushy-tailed woodrats ( Neotoma cinerea ), and that our assessments of species generally align with earlier characterizations of climate-change vulnerability based on life-history characteristics. Although AC did not differ dramatically among pika lineages, some attributes are likely constraining AC differently in various parts of the geographic range. Comparisons across taxonomic levels of pikas illustrated that, although AC levels were comparable in pika lineages versus range-wide, AC was assessed as lower in interior-Great-Basin pikas than across the entire O.p. schisticeps lineage. We conclude that the comparatively lower AC of pikas results in particularly high susceptibility to anthropogenic climate change, corroborating results from numerous other recent investigations of pikas' climate-responsiveness. Adaptive-capacity evaluations appear useful as a consistent way to identify sentinel species or populations and for conservation prioritization.

Biological Conservation↗

USGS2025

Species nativeness as a cultural paradigm in conservation

Conservation entails cultural practices shaped by our worldviews, values, beliefs, and priorities for our interactions with nature. These inform how we categorize which species we want to occur in which landscapes. In Western conservation organizations, conceptualizations of species ‘belonging’ typically align with a dichotomy of native versus introduced species. This is a cultural paradigm, informed by biological considerations, and it is not uniformly shared across different cultures, resulting in varied conceptualizations of species belonging. These conceptualizations may continue to evolve as socio-ecological systems change over time. Thus, misalignment in perceptions of species belonging can manifest in seemingly intractable conflicts. We apply a cultural evolutionary lens to: (1) consider the social history of the native-introduced dichotomy; (2) describe social and ecological factors causing friction around the dichotomy; (3) explore how conservation can integrate diverse and changing values about species belonging, and (4) make predictions about future socio-ecological change that may shape conservation governance and our categorization of species. In doing so, we encourage conservation scientists and practitioners to practice reflexivity about the cultural nature of conservation and management of introduced species. This application of cultural evolution presents a unique lens for recognizing the inevitability of both social and ecological change and inspires critical consideration of how diverse and changing values might be integrated into, and shape, the future of conservation.

Biological Conservation↗

USGS2006

Nonlinear inversion of potential-field data using a hybrid-encoding genetic algorithm

Using a genetic algorithm to solve an inverse problem of complex nonlinear geophysical equations is advantageous because it does not require computer gradients of models or "good" initial models. The multi-point search of a genetic algorithm makes it easier to find the globally optimal solution while avoiding falling into a local extremum. As is the case in other optimization approaches, the search efficiency for a genetic algorithm is vital in finding desired solutions successfully in a multi-dimensional model space. A binary-encoding genetic algorithm is hardly ever used to resolve an optimization problem such as a simple geophysical inversion with only three unknowns. The encoding mechanism, genetic operators, and population size of the genetic algorithm greatly affect search processes in the evolution. It is clear that improved operators and proper population size promote the convergence. Nevertheless, not all genetic operations perform perfectly while searching under either a uniform binary or a decimal encoding system. With the binary encoding mechanism, the crossover scheme may produce more new individuals than with the decimal encoding. On the other hand, the mutation scheme in a decimal encoding system will create new genes larger in scope than those in the binary encoding. This paper discusses approaches of exploiting the search potential of genetic operations in the two encoding systems and presents an approach with a hybrid-encoding mechanism, multi-point crossover, and dynamic population size for geophysical inversion. We present a method that is based on the routine in which the mutation operation is conducted in the decimal code and multi-point crossover operation in the binary code. The mix-encoding algorithm is called the hybrid-encoding genetic algorithm (HEGA). HEGA provides better genes with a higher probability by a mutation operator and improves genetic algorithms in resolving complicated geophysical inverse problems. Another significant result is that final solution is determined by the average model derived from multiple trials instead of one computation due to the randomness in a genetic algorithm procedure. These advantages were demonstrated by synthetic and real-world examples of inversion of potential-field data. ?? 2005 Elsevier Ltd. All rights reserved.

Computers & Geosciences↗