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Report of the River Master of the Delaware River for the period December 1, 2001 - November 30, 2002

A Decree of the United States Supreme Court in 1954 established the position of Delaware River Master within the U.S. Geological Survey. In addition, the Decree authorizes diversions of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York City, to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master will furnish reports to the Court, not less frequently than annually. This report is the 49th Annual Report of the River Master of the Delaware River. It covers the 2002 River Master report year, that is, the period from December 1, 2001, to November 30, 2002. During the report year, precipitation in the upper Delaware River Basin was 2.73 in. greater than the long-term average. Combined storage in Pepacton, Cannonsville, and Neversink Reservoirs was at a record low level on December 1, 2001. Reservoir storage increased steadily from mid-winter until late June. Storage declined steadily from early July to mid-October then increased through the end of the year. Delaware River operations were conducted at reduced levels from December 1, 2001, to May 25, 2002, when drought emergency conditions prevailed, and as prescribed by the Decree from May 26, 2002, to November 30, 2002. Diversions from the Delaware River Basin by New York City and New Jersey were in compliance with the terms of the Decree or with the reduced limits in effect during drought emergency conditions. Reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 101 days during the report year. Releases were made at experimental conservation rates-or rates designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs-on all other days. During the report year, New York City and New Jersey complied fully with the terms of the Decree, and during drought emergency conditions, with the terms of the 'Interstate Water Management Recommendations of the Parties to the Decree' (DRBC Resolution 83-13), and directives and requests of the River Master. As part of a long-term program, the quality of water in the Delaware Estuary between Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at various locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected by electronic instruments at four sites, and data on water temperature and specific conductance were collected at one site. In addition, selected water-quality data were collected at 3 sites on a monthly basis and at 19 sites on a semimonthly basis.

Delaware, Maryland, New Jersey, New York, Pennsylv↗

Type region of the Ione Formation (Eocene), central California: Stratigraphy, paleogeography, and relation to auriferous gravels

The middle Eocene Ione Formation extends over 200 miles (320 km) along the western edge of the Sierra Nevada. Our study was concentrated in the type region, 30 miles (48 km) along strike. There a bedrock ridge forms the seaward western side of the Ione depositional tract, defining a subbasin margin. The eastern limit of the type Ione is locally defined by high-angle faults. Ione sediments were spread over Upper Mesozoic metamorphic and plutonic bedrock, fed by gold-bearing streams dissecting the western slope of the ancestral Sierra Nevada. By middle Eocene time, a tropical or subtropical climate prevailed, leading to deep chemical weathering (including laterization) and a distinctively mature mineral assemblage was fed to and generated within Ione deposits. The Ione is noted for its abundant kaolinitic clay, some of it coarsely crystalline; the clay is present as both detrital grains and authigenic cement. Quartz is abundant, mostly as angular grains. Heavy mineral fractions are dominated by altered ilmenite and zircon. Distribution of feldspar is irregular, both stratigraphically and areally. Non-marine facies are most voluminous, and include conglomerates, especially at the base and along the eastern margins of the formation where they pass into Sierran auriferous gravels. Clays, grading into lignites, and gritty sands are also common facies. Both braided and meandering fluvial facies have been recognized. Shallow marine waters flooded the basin probably twice. Tongues of sediment exhibiting a variety of estuarine to marine indicators are underlain and overlain by fluvial deposits. Marine body fossils are found at only a few localities, but burrows identified as Ophiomorpha and cf. Thalassinoides are abundant in many places. Other clues to marginal marine deposition are the occurrence of glauconite in one bed, typical relations of lagoonal to beach (locally heavy-mineral-rich) lithofacies, closed-basin three-dimensional morphology of basinal facies, and high sulfur content of some marginal coals. The Ione has been said to be deltaic; however the two transgressional-regressional cycles we propose imply that only the regressional parts were deltaic. At other times, much of the type Ione would better be termed an intertidal estuary. Because the lower marine sequence was deposited against a paleobasin margin on the west, deltaic morphology was constrained, but apparently progradation was from north to south despite drainage into the basin from the east. Relations to the south are unclear due to the Stockton arch. The eastern margin of the type-Ione basin, and to some extent even its marine facies, are poorly constrained. A surface on Sierran bedrock to the east may have been stripped of some Ione basinal facies, leaving only coeval entrenched fluvial channel deposits.

California↗

Assessment and management of dead-wood habitat

The Bureau of Land Management (BLM) is in the process of revising its resource management plans for six districts in western and southern Oregon as the result of the settlement of a lawsuit brought by the American Forest Resource Council. A range of management alternatives is being considered and evaluated including at least one that will minimize reserves on O&C lands. In order to develop the bases for evaluating management alternatives, the agency needs to derive a reasonable range of objectives for key issues and resources. Dead-wood habitat for wildlife has been identified as a key resource for which decision-making tools and techniques need to be refined and clarified. Under the Northwest Forest Plan, reserves were to play an important role in providing habitat for species associated with dead wood (U.S. Department of Agriculture Forest Service and U.S. Department of the Interior Bureau of Land Management, 1994). Thus, the BLM needs to: 1) address the question of how dead wood will be provided if reserves are not included as a management strategy in the revised Resource Management Plan, and 2) be able to evaluate the effects of alternative land management approaches. Dead wood has become an increasingly important conservation issue in managed forests, as awareness of its function in providing wildlife habitat and in basic ecological processes has dramatically increased over the last several decades (Laudenslayer et al., 2002). A major concern of forest managers is providing dead wood habitat for terrestrial wildlife. Wildlife in Pacific Northwest forests have evolved with disturbances that create large amounts of dead wood; so, it is not surprising that many species are closely associated with standing (snags) or down, dead wood. In general, the occurrence or abundance of one-quarter to one-third of forest-dwelling vertebrate wildlife species, is strongly associated with availability of suitable dead-wood habitat (Bunnell et al., 1999; Rose et al., 2001). In Oregon and Washington, approximately 150 species of wildlife are reported to use dead wood in forests (O’Neil et al., 2001). Forty-seven sensitive and special-status species are associated with dead wood (Appendix A). These are key species for management consideration because concern over small or declining populations is often related to loss of suitable dead-wood habitat (Marshall et al., 1996). Primary excavators (woodpeckers) also are often the focus of dead-wood management, because they perform keystone functions in forest ecosystems by creating cavities for secondary cavity-nesters (Martin and Eadie, 1999; Aubry and Raley, 2002). A diverse guild of secondary cavity-users (including swallows, bluebirds, several species of ducks and owls, ash-throated flycatcher, flying squirrel, bats, and many other species) is unable to excavate dead wood, and therefore relies on cavities created by woodpeckers for nesting sites. Suitable nest cavities are essential for reproduction, and their availability limits population size (Newton, 1994). Thus, populations of secondary cavity-nesters are tightly linked to the habitat requirements of primary excavators. Although managers often focus on decaying wood as habitat for wildlife, the integral role dead wood plays in ecological processes is an equally important consideration for management. Rose et al. (2001) provide a thorough review of the ecological functions of dead wood in Pacific Northwest forests, briefly summarized here. Decaying wood functions in: soil development and productivity, nutrient cycling, nitrogen fixation, and carbon storage. From ridge tops, to headwater streams, to estuaries and coastal marine ecosystems, decaying wood is fundamental to diverse terrestrial and aquatic food webs. Wildlife species that use dead wood for cover or feeding are linked to these ecosystem processes through a broad array of functional roles, including facilitation of decay and trophic interactions with other organisms (Marcot, 2002; Marcot, 2003). For example, by puncturing bark and fragmenting sapwood, woodpeckers create sites favorable for wood-decaying organisms (Farris et al., 2004), which in turn create habitat for other species and facilitate nutrient cycling. Small mammals that use down wood for cover function in the dispersal of plant seeds and fungal spores (Carey et al., 1999). Resident cavitynesting birds may regulate insect populations by preying on overwintering arthropods (Jackson, 1979; Kroll and Fleet, 1979). These examples illustrate how dead wood not only directly provides habitat for a large number of wildlife species, but also forms the foundation of functional webs that critically influence forest ecosystems (Marcot, 2002; Marcot, 2003). The important and far-reaching implications of management of decaying wood highlight the need for conservation of dead-wood resources in managed forests. Consideration of the key ecological functions of species associated with dead wood can help guide management of dead wood in a framework consistent with the paradigm of ecosystem management (Marcot and Vander Heyden, 2001; Marcot, 2002.) As more information is revealed about the ecological and habitat values of decaying wood, concern has increased over a reduction in the current amounts of dead wood relative to historic levels (Ohmann and Waddell, 2002). Past management practices have tended to severely reduce amounts of dead wood throughout all stages of forest development (Hansen et al., 1991). The large amounts of legacy wood that characterize young post-disturbance forests are not realized in managed stands, because most of the wood volume is removed at harvest for economic and safety reasons. Mid-rotation thinning is used to “salvage” some mortality that might otherwise occur due to suppression, so fewer snags are recruited in mid-seral stages. Harvest rotations of 80 years or less truncate tree size in managed stands, and thus limit the production of large-diameter wood. As a consequence of these practices, dead wood has been reduced by as much as 90% after two rotations of managed Douglas-fir (Rose et al., 2001). Large legacy deadwood is becoming a scarce, critical habitat that will take decades to centuries to replace. Furthermore, management continues to have important direct and indirect effects on the amount and distribution of dead wood in forests. Current guidelines for managing dead wood may be inadequate to maintain habitat for all associated species because they largely focus on a single use of dead wood (nesting habitat) by a small suite of species (cavity-nesting birds), and may under represent the sizes and amounts of dead wood used by many wildlife species (Rose et al., 2001, Wilhere, 2003).

Open-File Report↗

Sidescan-sonar imagery, multibeam bathymetry, and surficial geologic interpretations of the sea floor in Rhode Island Sound, off Sakonnet Point, Rhode Island

The U.S. Geological Survey (USGS) is working with the National Oceanic and Atmospheric Administration (NOAA) to interpret the surficial geology in estuaries and sounds along the northeastern coast of the United States. This report interprets the area covered by NOAA Survey H11320, about 72 km² of sea floor in eastern Rhode Island Sound (RIS), located about 8 km south of Sakonnet Point, Rhode Island (fig. 1). Previous work in RIS includes studies of both sea-floor processes and subsurface geologic framework. McMaster (1960) mapped surficial sediment samples in Narragansett Bay and RIS and McMaster and others (1968) conducted a seismic-reflection survey in Block Island Sound and RIS. O'Hara and Oldale (1980) collected seismic-reflection profiles, sidescan-sonar data, and vibracores in eastern RIS (fig. 2). They interpreted the geologic history, assessed sand and gravel resources, and evaluated the mining impact of these resources. McMaster's (1960) interpretation of the surficial sediment within this study area consisted of sand with several isolated areas of gravel. Several other sediment samples were previously obtained within the study area: three National Oceanographic Data Center (NODC) dredge samples from 1942 consisted of sand and one National Ocean Service (NOS) sample from 1939 was rocky (fig. 2; Poppe and others, 2003). The purpose of this report is to define the sea-floor morphology and sedimentary environments and interpret processes occurring on the sea floor using sidescan-sonar imagery, multibeam bathymetry, and historic seismic-reflection profiles.

Rhode Island↗

Investigation of wind and water level for the Giacomini Wetland Restoration Project, Point Reyes National Seashore

Point Reyes National Seashore (PRNS), comprising unique elements of geological, biological, and historical interest, is located on the central California coast approximately 60 km northwest of San Francisco. The National Seashore contains nearly 130 km of exposed and protected shorelines, spectacular coastal cliffs and headlands, lagoons, open grasslands, bushy hillsides, and forested ridges. Approximately 30 km of the shoreline are coastal-dune habitat that supports 11 federally listed species, including the threatened western snowy plover and the endangered plants Tidestrom's lupine ( Lupinus tidestromii ) and beach layia ( Layia carnosa ). The San Andreas Fault, a right-lateral strike-slip fault, trends northwest along the northeastern side of the park. Tomales Bay, which is straight, long, narrow, and shallow, runs along the northeastern boundary of PRNS. The Bay, which fills the northwestern end of a rift valley at the intersection of the San Andreas Fault with the coastline, is approximately 20 km long, 2 km wide, and 6 m deep with mountainous terrain to the southwest and rolling hills to the northeast. Tomales Bay is one of the cleanest estuaries on the West Coast. In winter, approximately 17,000 to 20,000 shorebirds inhabit Tomales Bay and Bodega Bay, which lies directly to the north. At the head of Tomales Bay, the Giacomini Ranch comprises 563 acres of pastureland currently being used for grazing dairy cattle. After more than 50 years of operation as a dairy, the National Park Service acquired the Giacomini property with the intention to restore most of it and the nearby Olema Marsh to tidal wetland. Restoration will add approximately 4% to the existing coastal wetlands in California. The project will return the headwaters of Tomales Bay and two major stream intersections to an intertidal marsh environment, enhancing habitat for both wildlife and fish populations and contributing to the long-term health of Tomales Bay. Prior to the establishment of the ranch, the area was primarily salt marsh that formed as the delta of Lagunitas Creek expanded into Tomales Bay. In converting the salt marsh to dairy land, levees and tide gates were constructed to prevent tidal incursion and stream flooding. Those levees have significantly altered the patterns of estuarine circulation and sediment deposition. To restore natural hydrologic processes within the area and to promote the return of ecological functions and processes, the levees will have to be breached or removed. Developing a successful restoration strategy requires knowledge of elevations within the pastureland and the range of water depths that can be expected from tidal, river, and wind action. In support of the restoration program, the USGS provides technical assistance to PRNS in the form of a scientific study focusing on understanding the physical processes that could affect the Giacomini wetland restoration. The study will yield scientific products that NPS resource managers can use in designing and implementing the restoration project. Research elements include: - Develop a Geodetic Control Network (GCN) throughout PRNS that meets the standards specified National Geodetic Survey data base (the NGS "Bluebook"). The grid will allow this and future studies to be conducted to a precision commensurate with the expressed goals of PRNS. The survey will consist of three steps: (1) verify existing GPS control monuments in the area; (2) tie control monuments in the study areas to the GPS control monuments; and (3) establish NAVD88 elevations using a digital electronic level. - Conduct a detailed survey of the Giacomini site to produce an accurate topographic map of the property. The site survey can be coupled with on-site water-level measurements to produce an empirical flooding model. - Measure water level and wind regime at the Giacomini site. The water-level range is critical to determining the wetland types based on the elevation of the dairy land. Water level at Sacramento Landing, in central Tomales Bay, will also be measured for comparison. As of November 2005, we have created a GCN, produced a detailed topographic map of the Giacomini site, and collected approximately three years of water-level and wind data at the Giacomini site and over one year of usable water-level data at the Sacramento Landing pier.

California↗

Assessment of groundwater input and water quality changes impacting natural vegetation in the Loxahatchee River and floodplain ecosystem, Florida

The Loxahatchee River and Estuary are small, shallow, water bodies located in southeastern Florida. Historically, the Northwest Branch (Fork) of the Loxahatchee River was primarily a freshwater system. In 1947, the river inlet at Jupiter was dredged for navigation and has remained permanently open since that time. Drainage patterns within the basin have also been altered significantly due to land development, road construction (e.g., Florida Turnpike), and construction of the C-18 and other canals. These anthropogenic activities along with sea level rise have resulted in significant adverse impacts on the ecosystem over the last several decades, including increased saltwater encroachment and undesired vegetation changes in the floodplain. The problem of saltwater intrusion and vegetation degradation in the Loxahatchee River may be partly induced by diminished freshwater input, from both surface water and ground water into the River system. The overall objective of this project was to assess the seasonal surface water and groundwater interaction and the influence of the biogeochemical characteristics of shallow groundwater and porewater on vegetation health in the Loxahatchee floodplain. The hypothesis tested are: (1) groundwater influx constitutes a significant component of the overall flow of water into the Loxahatchee River; (2) salinity and other chemical constituents in shallow groundwater and porewater of the river floodplain may affect the distribution and health of the floodplain vegetation.

Florida↗

Retrospective Review of Watershed Characteristics and a Framework for Future Research in the Sarasota Bay Watershed, Florida

The U.S. Geological Survey, in cooperation with the Sarasota Bay Estuary Program conducted a retrospective review of characteristics of the Sarasota Bay watershed in west-central Florida. This report describes watershed characteristics, surface- and ground-water processes, and the environmental setting of the Sarasota Bay watershed. Population growth during the last 50 years is transforming the Sarasota Bay watershed from rural and agriculture to urban and suburban. The transition has resulted in land-use changes that influence surface- and ground-water processes in the watershed. Increased impervious cover decreases recharge to ground water and increases overland runoff and the pollutants carried in the runoff. Soil compaction resulting from agriculture, construction, and recreation activities also decreases recharge to ground water. Conventional approaches to stormwater runoff have involved conveyances and large storage areas. Low-impact development approaches, designed to provide recharge near the precipitation point-of-contact, are being used increasingly in the watershed. Simple pollutant loading models applied to the Sarasota Bay watershed have focused on large-scale processes and pollutant loads determined from empirical values and mean event concentrations. Complex watershed models and more intensive data-collection programs can provide the level of information needed to quantify (1) the effects of lot-scale land practices on runoff, storage, and ground-water recharge, (2) dry and wet season flux of nutrients through atmospheric deposition, (3) changes in partitioning of water and contaminants as urbanization alters predevelopment rainfall-runoff relations, and (4) linkages between watershed models and lot-scale models to evaluate the effect of small-scale changes over the entire Sarasota Bay watershed. As urbanization in the Sarasota Bay watershed continues, focused research on water-resources issues can provide information needed by water-resources managers to ensure the future health of the watershed.

Open-File Report↗

Habitat and hydrology: Assessing biological resources of the Suwannee River Estuarine system

The U.S. Geological Survey conducted a pilot integrated-science study during 2002 and 2003 to map, describe, and evaluate benthic and emergent habitats in the Suwannee River Estuary on the Gulf Coast of Florida. Categories of aquatic, emergent, and terrestrial habitats were determined from hyperspectral imagery and integrated with hydrologic data to identify estuarine fish habitats. Maps of intertidal and benthic habitat were derived from 12-band, 4-m resolution hyperspectral imagery acquired in September 2002. Hydrologic data were collected from tidal creeks during the winter of 2002-03 and the summer-fall of 2003. Fish were sampled from tidal creeks during March 2003 using rivulet nets, throw traps, and seine nets. Habitat characteristics, hydrologic data, and fish assemblages were compared for tidal creeks north and south of the Suwannee River. Tidal creeks north of the river had more shoreline edge and shallow habitat than creeks to the south. Tidal creeks south of the river were generally of lower salinity (fresher) and supported more freshwater marsh and submerged aquatic vegetation. The southern creeks tended to be deeper but less sinuous than the northern creeks. Water quality and inundation were evaluated with hydrologic monitoring in the creeks. In-situ gauges, recording pressure and temperature, documented a net discharge of brackish to saline groundwater into the tidal creeks with pronounced flow during low tide. Groundwater flow into the creeks was most prominent north of the river. Combined fish-sampling results showed an overall greater abundance of organisms and greater species richness in the southern creeks, nominally attributed a greater range in water quality. Fish samples were dominated by juvenile spot, grass shrimp, bay anchovy, and silverside. The short time frame for hydrologic monitoring and the one-time fish-sampling effort were insufficient for forming definitive conclusions. However, the combination of hyperspectral imagery and hydrologic data identified a range of habitat characteristics and differences in tidal-creek morphology. This endeavor related nearshore benthic habitat and hydrologic conditions with habitat suitability and fish assemblages and provides a template for similar applications in shallow and nearshore estuarine environments.

Florida↗

Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California, 2007

This report describes a study of survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam in 2006. This was the second year of a multi-year study with the goal of determining the effects of discharge at Iron Gate Dam on survival of juvenile coho salmon downstream. The study was a collaborative effort among U.S. Geological Survey (USGS), U.S. Fish and Wildlife Service (USFWS), and the Yurok and Karuk Tribal Fisheries Departments. The goals of the study included: 1) estimating the survival of wild and hatchery juvenile coho salmon in the Klamath River downstream from Iron Gate Dam, 2) determining the effects of discharge and other covariates on their survival and migration, and 3) determining if fish from Iron Gate Hatchery could be used as surrogates for the limited source of wild fish. The major findings of the study in 2006 include: River discharges during the 2006 study period (4 April through 21 July 2006) were among the greatest on record. Average daily discharge at Iron Gate Dam was 3,956 cubic feet per second (cfs) and ranged from 997 to 10,300 cfs. Discharge at Iron Gate Dam was positively correlated with discharges of tributaries downstream due to the above average water year and frequent occurrence of spill at Iron Gate Dam. Average daily discharge near the estuary was 25,789 cfs and ranged from 4,740 to 50,600 cfs. This study was based on hatchery fish taken directly from a tank at Iron Gate Hatchery and wild fish captured in a rotary trap on the Shasta River. Releases of both groups began on 4 April when the catch of wild fish in California Department of Fish and Game‟s Shasta River rotary trap increased, but trap catches varied throughout the study period, resulting in differences in release dates of hatchery and wild fish. A total of 211 hatchery fish were released from 4 April through 26 May. Wild and hatchery fish released on a regular schedule between 25 April and 16 May 2006 were used in comparisons of the survival and migration of hatchery (N = 120) and wild (N = 162) fish. Additional analyses were performed using hatchery fish from all dates. The data and models did not support clear differences between survivals of hatchery and wild fish released on common dates, so estimates of reach survivals were made after pooling these data. Estimates of survival were lowest in the Iron Gate Dam to Scott River reach (0.813) and greatest in the Salmon River to Trinity River reach (1.000). The overall survival from river kilometer 309 (Iron Gate Hatchery) to river kilometer 33 was 0.653 (95% CI 0.578 to 0.729). Estimates of survival based on all hatchery fish releases were similar to those from release dates common to hatchery and wild fish and are similar to those in other river systems over similar distances. The migrations of hatchery and wild fish were different in the uppermost sections of the study area and were similar thereafter. A lag between release and migration, primarily upstream from the Scott River (river kilometer 234), was present in hatchery fish to a greater extent than in wild fish, resulting in differences in migration rates. Fish from both origins spent more time between release and the Scott River than in individual reaches downstream, and this was the only reach in which travel times of fish increased as discharge decreased. The travel times of hatchery and wild fish between sites were statistically similar downstream from Indian Creek (river kilometer 178). There were differences and similarities in the analyses of the effects of covariates on survivals of hatchery and wild fish. The models of covariate effects based on hatchery and wild fish released on common dates indicated effects on wild fish survival that were not supported in data from hatchery fish. However, when the entire suite of hatchery fish releases were used the results of the analyses were similar to those based on wild fish. In both instances the effects of temperature and release date were primarily in the first reach, the reach fish of both origins spent most of their time within. The signs of the effects of these covariates differed among the fish origins (negative for wild and positive for hatchery fish), presumably due to differences in their migrations in the first reach. The effects of dam discharge on survivals of hatchery and wild fish were generally similar (positive relation), and the effects on hatchery, and to a lesser extent wild, fish were largely downstream from the Scott River. This is likely due to the prolonged residence of the naïve hatchery fish, and to a lesser extent, migrant wild fish between release and the Scott River. Inasmuch as the differences between hatchery and wild fish we observed were likely those of migrants vs. non-migrants, the use of hatchery fish captured as they are migrating downstream, rather than those directly from hatchery tanks (i.e., naïve), may improve similarities between hatchery and wild fish in future studies. The data and models used in 2006 do not support the use of naïve hatchery fish as surrogates for migrant wild fish in determining the effects of discharge on survival upstream from the Scott River. This conclusion is based on the different effects of covariates in this reach that were likely attributable to the differences in hatchery and wild migration behaviors in this reach. The results of this second year of research provide insight to the migration and survival of hatchery and wild juvenile coho salmon in the Klamath River, but the results are from a single unusual water year. The results may be different during other water year types. The current information supports a positive relation between discharge at Iron Gate Dam and survival of juvenile coho salmon downstream, but additional data should be used to refine this relation. Discharge at the dam was correlated with discharges of Klamath River tributaries during this above average water year. The data and models from the 2006 study provide the first estimates of survival of these fish in the Klamath River and can be used with data from years with other water year types to examine the effects of discharge on survival. This will only be possible over a period of years in which the correlations between discharge and other factors, such as water temperature and date, are diminished. An experimental approach in which discharges are varied at Iron Gate Dam is the most direct method to determine if survivals are affected by discharge, but this may not be feasible given the limited storage capacity of the project.

California↗

Report of the River Master of the Delaware River for the period December 1, 2002-November 30, 2003

A Decree of the Supreme Court of the United States, entered in 1954, established the position of Delaware River Master within the U.S. Geological Survey (USGS). In addition, the Decree authorizes diversions of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York City, to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master will furnish reports to the Court, not less frequently than annually. This report is the 50th Annual Report of the River Master of the Delaware River. It covers the 2003 River Master report year; that is, the period from December 1, 2002 to November 30, 2003. During the report year, precipitation in the upper Delaware River Basin was 13.40 inches (131 percent) greater than the long-term average. Combined storage in Pepacton, Cannonsville, and Neversink Reservoirs was above the long-term median on December 1, 2002. Reservoir storage increased rapidly in mid-March 2003 and all the reservoirs filled and spilled. The reservoirs remained nearly full for the remainder of the report year. Delaware River operations throughout the report year were conducted as stipulated by the Decree. Diversions from the Delaware River Basin by New York City and New Jersey were in compliance with the Decree. Reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 10 days during the report year. Releases were made at experimental conservation rates—or rates designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs—on all other days. During the report year, New York City and New Jersey complied fully with the terms of the Decree, and directives and requests of the River Master. As part of a long-term program, the quality of water in the Delaware Estuary between Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at various locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected continuously by electronic instruments at four sites. In addition, selected water-quality data were collected at 3 sites on a monthly basis and at 19 sites on a semi-monthly basis.

New Jersey, New York, Pennsylvania↗

Detections of Acoustic-Tagged Green Sturgeon in Baker Bay on the Lower Columbia River during September - November 2008

Acoustic transmitters implanted in green sturgeon (Acipenser medirostris) captured in rivers in California were detected by acoustic receivers deployed within and around Baker Bay. The receivers were deployed at eight locations in the Bay and adjacent navigation channels of the Lower Columbia River during a period of anticipated channel dredging. Three of the transmitters detected were confirmed to have been implanted into green sturgeon in previous years; two were from the Sacramento River and one was from the Klamath River. The transmitters (fish) were within detection range of the receivers for only a short period, which is consistent with findings of earlier studies that green sturgeon make rapid and extensive intra-estuary movements.

Open-File Report↗

Vibracore, radiocarbon, microfossil, and grain-size data from Apalachicola Bay, Florida

In 2007, the U.S. Geological Survey collected 24 vibracores within Apalachicola Bay, Florida. The vibracores were collected by using a Rossfelder electric percussive (P-3) vibracore system during a cruise on the Research Vessel (R/V) G.K. Gilbert. Selection of the core sites was based on a geophysical survey that was conducted during 2005 and 2006 in collaboration with the National Oceanic and Atmospheric Administration's (NOAA) Coastal Services Center (CSC) and the Apalachicola Bay National Estuarine Research Reserve. This report contains the vibracore data logs, photographs, and core-derived data including grain-size analyses, radiocarbon ages, microfossil counts, and sedimentological interpretations. The long-term goal of this study is to provide maps, data, and assistance to the Apalachicola Bay National Estuarine Research Reserve in their effort to monitor and understand the geology and ecology of Apalachicola Bay Estuary. These data will inform coastal managers charged with the responsibility for resource preservation.

Florida↗

Report of the River Master of the Delaware River for the period December 1, 2003-November 30, 2004

A Decree of the Supreme Court of the United States, entered in 1954, established the position of Delaware River Master within the U.S. Geological Survey (USGS). In addition, the Decree authorizes diversions of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York City, to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master will furnish reports to the Court, not less frequently than annually. This report is the 51st Annual Report of the River Master of the Delaware River. It covers the 2004 River Master report year; that is, the period from December 1, 2003, to November 30, 2004. During the report year, precipitation in the upper Delaware River Basin was 9.03 in. (121 percent) greater than the long-term average. Combined storage in Pepacton, Cannonsville, and Neversink Reservoirs was at a record high level on December 1, 2003. Reservoir storage remained high throughout the year with at least one reservoir spilling every month of the year. Delaware River operations throughout the year were conducted as stipulated by the Decree. Diversions from the Delaware River Basin by New York City and New Jersey were in compliance with the Decree. Reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 30 days during the report year. Releases were made at conservation rates—or rates designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs—on all other days. During the report year, New York City and New Jersey complied fully with the terms of the Decree, and directives and requests of the River Master. As part of a long-term program, the quality of water in the Delaware Estuary between Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at various locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected continuously by electronic instruments at four sites. In addition, selected water-quality data were collected at 3 sites on a monthly basis and at 19 sites on a semi-monthly basis.

New Jersey, New York, Pennsylvania↗

Extended abstracts from the Coastal Habitats in Puget Sound (CHIPS) 2006 Workshop

Puget Sound is the second largest estuary in the United States. Its unique geology, climate, and nutrient-rich waters produce and sustain biologically productive coastal habitats. These same natural characteristics also contribute to a high quality of life that has led to a significant growth in human population and associated development. This population growth, and the accompanying rural and urban development, has played a role in degrading Puget Sound ecosystems, including declines in fish and wildlife populations, water-quality issues, and loss and degradation of coastal habitats. In response to these ecosystem declines and the potential for strategic large-scale preservation and restoration, a coalition of local, State, and Federal agencies, including the private sector, Tribes, and local universities, initiated the Puget Sound Nearshore Ecosystem Restoration Project (PSNERP). The Nearshore Science Team (NST) of PSNERP, along with the U.S. Geological Survey, developed a Science Strategy and Research Plan (Gelfenbaum and others, 2006) to help guide science activities associated with nearshore ecosystem restoration. Implementation of the Research Plan includes a call for State and Federal agencies to direct scientific studies to support PSNERP information needs. In addition, the overall Science Strategy promotes greater communication with decision makers and dissemination of scientific results to the broader scientific community. On November 14–16, 2006, the U.S. Geological Survey sponsored an interdisciplinary Coastal Habitats in Puget Sound (CHIPS) Research Workshop at Fort Worden State Park, Port Townsend, Washington. The main goals of the workshop were to coordinate, integrate, and link research on the nearshore of Puget Sound. Presented research focused on three themes: (1) restoration of large river deltas; (2) recovery of the nearshore ecosystem of the Elwha River; and (3) effects of urbanization on nearshore ecosystems. The more than 35 presentations covered a wide range of ongoing inter-disciplinary research, including studies of sediment geochemistry of aquatic environments, sediment budgets, tracking fish pathways, expansion of invasive forams, beach and nearshore sedimentary environments, using influence diagrams as a decision support tool, forage fish, submarine groundwater, and much, much more. The primary focus within these themes was on developing information on the physical, chemical, and biological processes, as well as the human dimensions, associated with the restoration or rehabilitation of the nearshore environment. The workshop was an excellent opportunity for USGS scientists and collaborators who are working on Puget Sound coastal habitats to present their preliminary findings, discuss upcoming research, and to identify opportunities for interdisciplinary collaboration. A compilation of extended abstracts from workshop participants, this proceedings volume serves as a useful reference for attendees of the workshop and for those unable to attend. Taken together, the abstracts in this report provide a view of the current status of USGS multidisciplinary research on Puget Sound coastal habitats.

Open-File Report↗

Assessment of contaminant exposure and effects on ospreys nesting along the Lower Duwamish River, Washington, 2006-07

We evaluated the effects of contaminants on osprey (Pandion haliaetus) nesting along the lower Duwamish River (LDR), Washington, and used the upper reach of the Willamette River (WR), Oregon, as a reference site. Osprey eggs and nestling blood (plasma) were collected at nests along the LDR (11 eggs, 7 plasmas) and WR (10 eggs, 6 plasmas) in 2006-07 and analyzed for contaminants. Additionally, hematology and serum chemistries were determined in the blood/plasma samples of nestlings (about 35-45 days old) and were used as potential indicators of stress induced by contaminant exposure. Detailed foraging information for ospreys nesting along the LDR was collected and evaluated to better understand contaminant profiles observed in the eggs and plasma. Additional residue data from 26 osprey eggs collected and analyzed in 2002-03 from nests along the LDR, Snohomish River Estuary (SRE) and Lake Washington (LW) in the Puget Sound (PS) region also were evaluated.

Washington↗

Benthic flux of nutrients and trace metals in the northern component of San Francisco Bay, California

Two sets of sampling trips were coordinated in late summer 2008 (weeks of July 8 and August 6) to sample the interstitial and overlying bottom waters at 10 shallow locations (9 sites <3 meters in depth) within the northern component of the San Francisco Bay/Delta (herein referred to as North Bay). The work was performed to better understand sources of biologically reactive solutes (namely, dissolved macronutrients and trace metals) that may affect the base of the food web in this part of the estuary. A nonmetallic pore-water profiler was used to obtain the first centimeter-scale estimates of the vertical solute-concentration gradients for diffusive-flux determinations. This study, performed in collaboration with scientists from San Francisco State University?s Romberg Tiburon Center for Environmental Studies, provides information to assist in developing and refining management strategies for the Bay/Delta system and supports efforts to monitor changes in food-web structure associated with regional habitat modifications directed by the California Bay-Delta Authority. On July 7, 2008, and August 5, 2008, pore-water profilers were successfully deployed at six North Bay sites per trip to measure the concentration gradient of dissolved macronutrients and trace metals near the sediment-water interface. Only two of the sites (433 and SSB009 within Honker Bay) were sampled in both series of profiler deployments. At each sampling site, profilers were deployed in triplicate, while discrete samples and dataloggers were used to collect ancillary data from both the water column and benthos to help interpret diffusive-flux measurements. Benthic flux of dissolved (0.2-micron filtered) inorganic phosphate (that is, soluble reactive phosphorus (SRP)) ranged from negligible levels (-0.003?0.005 millimole per square meter per day (mmole m-2d-1) at Site 4.1 outside Honker Bay) to 0.060?0.006 mmole m-2d-1 near the northern coast of Brown?s Island. Except for the elevated flux at Browns Island, the benthic flux of soluble reactive phosphorus (SRP) was consistently: (1) lower than previously reported for South Bay sites, (2) an order of magnitude lower than oligotrophic Coeur d?Alene Lake, (3) two orders of magnitude lower than determined for eutrophic Upper Klamath Lake, and (4) an order of magnitude or more lower than the estimated summer riverine inputs for SRP (900 to 1,300 kilograms of phosphorous per day (kg-P d-1)). In contrast to fluxes reported for the South Bay, nitrate fluxes were consistently negative (that is, drawn from the water column into the sediment), except for one site with statistically insignificant nitrate fluxes (Site 409 within Suisun Bay). The most negative nitrate flux (-7.3?0.1 mmole m-2d-1) was observed within Grizzly Bay (Site 416). Observed nitrate fluxes bracketed the estimated summer fluvial flux of nitrate (3,500 to 5,000 kg-N d-1). With the exception of the two Grizzly Bay sites (416 and 417), the consistently positive benthic flux of ammonia generally counteracted the negative flux of nitrate to yield a net balance of dissolved inorganic nitrogen. Ammonia benthic fluxes extrapolated for Suisun Bay ranged from 320 kg-N d-1 (Site SSB009 near the entrance to Honker Bay) to 1,900 kg-N d-1 (Montezuma Island). These values represent a significant ammonia source to the water column relative to summer riverine inputs (approximately 400 to 600 kg-N d-1). Dissolved silica also displayed a consistently positive benthic flux, except for Site 409 within Suisun Bay, which showed insignificant fluxes (also insignificant for nitrate and SRP). As with the nitrate fluxes, Grizzly Bay and Browns Island sites yielded the highest dissolved silica fluxes (1.3?1.2 to 2.5?0.6 mmole m-2d-1, respectively). These initial diffusive-flux estimates are greater than those measured in the South Bay using core-incubation experiments, which include bioturbation and bioirrigation effects, but they are nevertheless probably one to t

Open-File Report↗

Report of the River Master of the Delaware River for the period December 1, 2004-November 30, 2005

A Decree of the Supreme Court of the United States, entered in 1954, established the position of Delaware River Master within the U.S. Geological Survey. In addition, the Decree authorizes diversions of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York City, to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master will furnish reports to the Court, not less frequently than annually. This report is the 52nd Annual Report of the River Master of the Delaware River. It covers the 2005 River Master report year; that is, the period from December 1, 2004, to November 30, 2005. During the report year, precipitation in the upper Delaware River Basin was 7.56 in., or 117 percent of the long-term average. Combined storage in Pepacton, Cannonsville, and Neversink Reservoirs remained high from December 2004 to May 2005 and reached a record high level on April 3, 2005. Reservoir storage decreased steadily from May to early October, then increased rapidly through the end of November. Delaware River operations throughout the year were conducted as stipulated by the Decree. Diversions from the Delaware River Basin by New York City and New Jersey were in compliance with the Decree. Reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 120 days during the report year. Releases were made at conservation rates-or rates designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs-on all other days. During the report year, New York City and New Jersey complied fully with the terms of the Decree, and directives and requests of the River Master. As part of a long-term program, the quality of water in the Delaware Estuary between Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at various locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected continuously by electronic instruments at four sites. In addition, selected water-quality data were collected at 3 sites on a monthly basis and at 19 sites on a twice-monthly basis.

Open-File Report↗

Public review draft: A method for assessing carbon stocks, carbon sequestration, and greenhouse-gas fluxes in ecosystems of the United States under present conditions and future scenarios

The Energy Independence and Security Act of 2007 (EISA), Section 712, authorizes the U.S. Department of the Interior to develop a methodology and conduct an assessment of the Nation's ecosystems focusing on carbon stocks, carbon sequestration, and emissions of three greenhouse gases (GHGs): carbon dioxide, methane, and nitrous oxide. The major requirements include (1) an assessment of all ecosystems (terrestrial systems, such as forests, croplands, wetlands, shrub and grasslands; and aquatic ecosystems, such as rivers, lakes, and estuaries), (2) an estimation of annual potential capacities of ecosystems to increase carbon sequestration and reduce net GHG emissions in the context of mitigation strategies (including management and restoration activities), and (3) an evaluation of the effects of controlling processes, such as climate change, land use and land cover, and wildlfires. The purpose of this draft methodology for public review is to propose a technical plan to conduct the assessment. Within the methodology, the concepts of ecosystems, carbon pools, and GHG fluxes used for the assessment follow conventional definitions in use by major national and international assessment or inventory efforts. In order to estimate current ecosystem carbon stocks and GHG fluxes and to understand the potential capacity and effects of mitigation strategies, the method will use two time periods for the assessment: 2001 through 2010, which establishes a current ecosystem GHG baseline and will be used to validate the models; and 2011 through 2050, which will be used to assess future potential conditions based on a set of projected scenarios. The scenario framework is constructed using storylines of the Intergovernmental Panel on Climate Change (IPCC) Special Report Emission Scenarios (SRES), along with initial reference land-use and land-cover (LULC) and land-management scenarios. An additional three LULC and land-management mitigation scenarios will be constructed for each storyline to enhance carbon sequestration and reduce GHG fluxes in ecosystems. Input from regional experts and stakeholders will be solicited to construct realistic and meaningful scenarios. The methods for mapping the current LULC and ecosystem disturbances will require the extensive use of both remote-sensing data and in-situ (for example, forest inventory data) to capture and characterize landscape-change events. For future potential LULC and ecosystem disturbances, key drivers such as socioeconomic, policy, and climate assumptions will be used in addition to biophysical data. The product of these analyses will be a series of maps for each future year for each scenario. These annual maps will form the basis for estimating carbon storage and GHG emissions. For terrestrial ecosystems, carbon storage, carbon-sequestration capacities, and GHG emissions under the current and projected future conditions will be assessed using the LULC and ecosystem-disturbance estimates in map format with a spatially explicit biogeochemical ensemble modeling system that incorporates properties of management activities (such as tillage or harvesting) and properties of individual ecosystems (such as elevation, vegetation characteristics, and soil attributes). For aquatic ecosystems, carbon burial in sediments and GHG fluxes are functions of the current and projected future stream flow and sediment transports, and therefore will be assessed using empirical modeling methods. Validation and uncertainty analysis methods described in the methodology will follow established guidelines to assess the quality of the assessment results. The U.S. Environmental Protection Agency's Level II ecoregions map (which delineates 24 ecoregions for the Nation) will be the practical instrument for developing and delivering assessment results. Consequently, the ecoregion will be the reporting unit of the assessment because the mitigation scenarios, assessment results, validation, and uncertainty analysis will be

Open-File Report↗