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USGS2015

Estimating the abundance of the Southern Hudson Bay polar bear subpopulation with aerial surveys

The Southern Hudson Bay (SH) polar bear subpopulation occurs at the southern extent of the species’ range. Although capture–recapture studies indicate abundance was likely unchanged between 1986 and 2005, declines in body condition and survival occurred during the period, possibly foreshadowing a future decrease in abundance. To obtain a current estimate of abundance, we conducted a comprehensive line transect aerial survey of SH during 2011–2012. We stratified the study site by anticipated densities and flew coastal contour transects and systematically spaced inland transects in Ontario and on Akimiski Island and large offshore islands in 2011. Data were collected with double-observer and distance sampling protocols. We surveyed small islands in James Bay and eastern Hudson Bay and flew a comprehensive transect along the Québec coastline in 2012. We observed 667 bears in Ontario and on Akimiski Island and nearby islands in 2011, and we sighted 80 bears on offshore islands during 2012. Mark–recapture distance sampling and sight–resight models yielded an estimate of 860 (SE = 174) for the 2011 study area. Our estimate of abundance for the entire SH subpopulation (943; SE = 174) suggests that abundance is unlikely to have changed significantly since 1986. However, this result should be interpreted cautiously because of the methodological differences between historical studies (physical capture–recapture) and this survey. A conservative management approach is warranted given previous increases in duration of the ice-free season, which are predicted to continue in the future, and previously documented declines in body condition and vital rates.

Polar Biology↗

USGS2020

Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development

Urban development has major impacts on connectivity among wildlife populations and is thus likely an important factor shaping pathogen transmission in wildlife. However, most investigations of wildlife diseases in urban areas focus on prevalence and infection risk rather than potential effects of urbanization on transmission itself. Feline immunodeficiency virus (FIV) is a directly transmitted retrovirus that infects many felid species and can be used as a model for studying pathogen transmission at landscape scales. We investigated phylogenetic relationships among FIV isolates sampled from five bobcat ( Lynx rufus ) populations in coastal southern California that appear isolated due to major highways and dense urban development. Divergence dates among FIV phylogenetic lineages in several cases reflected historical urban growth and construction of major highways. We found strong FIV phylogeographic structure among three host populations north‐west of Los Angeles, largely coincident with host genetic structure. In contrast, relatively little FIV phylogeographic structure existed among two genetically distinct host populations south‐east of Los Angeles. Rates of FIV transfer among host populations did not vary significantly, with the lack of phylogenetic structure south‐east of Los Angeles unlikely to reflect frequent contemporary transmission among populations. Our results indicate that major barriers to host gene flow can also act as barriers to pathogen spread, suggesting potentially reduced susceptibility of fragmented populations to novel directly transmitted pathogens. Infrequent exchange of FIV among host populations suggests that populations would best be managed as distinct units in the event of a severe disease outbreak. Phylogeographic inference of pathogen transmission is useful for estimating the ability of geographic barriers to constrain disease spread and can provide insights into contemporary and historical drivers of host population connectivity.

California↗

USGS2019

Wetland biomass and productivity in Coastal Louisiana: Base line data (1976-2015) and knowledge gaps for the development of spatially explicit models for ecosystem restoration and rehabilitation initiatives

Coastal Louisiana host 37% of the coastal wetland area in the conterminous US, including one of the deltaic coastal regions more susceptible to the synergy of human and natural impacts causing wetland loss. As a result of the construction of flood protection infrastructure, dredging of channels across wetlands for oil/gas exploration and maritime transport activities, coastal Coastal Louisiana hosts 37% of the coastal wetland area in the conterminous US, including one of the deltaic coastal regions more susceptible to the synergy of human and natural impacts causing wetland loss. As a result of the construction of flood protection infrastructure, dredging of channels across wetlands for oil/gas exploration and maritime transport activities, coastal Louisiana has lost approximately 4900 km2 of wetland area since the early 1930s. Despite the economic relevance of both wetland biomass and net primary productivity (NPP) as ecosystem services, there is a lack of vegetation simulation models to forecast the trends of those functional attributes at the landscape level as hydrological restoration projects are implemented. Here, we review the availability of peer-reviewed biomass and NPP wetland data (below and aboveground) published during the period 1976–2015 for use in the development, calibration and validation of high spatial resolution (<200 m × 200 m) vegetation process-based ecological models. We discuss and list the knowledge gaps for those species that represent vegetation community associations of ecological importance, including the long-term research issues associated to limited number of paired belowground biomass and productivity studies across hydrological basins currently undergoing different freshwater diversions management regimes and hydrological restoration priorities.

Louisiana↗

USGS2001

Assessment of water-quality conditions in the J.B. Converse Lake watershed, Mobile County, Alabama, 1990-98

J.B. Converse (Converse) Lake is a 3,600- acre, tributary-storage reservoir in Mobile County, southwestern Alabama. The lake serves as the primary drinking-water supply for the city of Mobile. The Converse Lake watershed lies within the Coastal Plain Physiographic Province. Semiconsolidated to unconsolidated sediments of sand, silt, gravel, and clay underlie the watershed, and are covered by acidic soils. Land use in the watershed is mainly forest (64 percent) and agriculture (31 percent). Residential and commercial development account for only 1 percent of the total land use in the watershed. Converse Lake receives inflow from seven major tributaries. The greatest inflows are from Big Creek, Crooked Creek, and Hamilton Creek that had mean annual streamflows of 72.2, 19.4, and 25.0 cubic feet per second, respectively, for the period 1990 to 1998, which represents about 72 percent of the total annual streamflow to the lake. The total mean annual inflow to the lake is estimated to be about 163 cubic feet per second. In general, water quality in Converse Lake and its tributaries meets the criteria established by the Alabama Department of Environmental Management (ADEM) for drinking-water supplies, whole-body contact, and aquatic life. The exceptions include acidic pH levels, iron and manganese levels above secondary or aesthetic criteria, and fecal bacterial levels in some tributaries above whole-body contact (swimmable) criteria. The pH levels throughout the watershed were commonly below the criteria level of 6.0, but this appears to have been a naturally occurring phenomenon caused by poorly buffered soil types, resistant sediments, and forested land use. Median iron and manganese levels were above aesthetic criteria levels of 300 and 50 micrograms per liter, respectively, in some tributaries. All tributary sites in the Converse Lake watershed had median and minimum dissolved-oxygen concentrations above the ADEM criteria level of 5 milligrams per liter except for Boggy Branch, which had a minimum dissolved-oxygen concentration of 3.7 milligrams per liter. The degree to which nutrient contributions from tributaries were causing nutrient enrichment and eutrophication in Converse Lake was assessed. Trend analysis detected little or no change in nutrient concentrations at the tributary and lake sites in the Converse Lake watershed from the 1991 to 1998 water years. Nutrient concentrations at most tributary sites exhibited a significant, positive relation with streamflow that indicated the dominant source of nutrient input to the watershed is from nonpoint contributions. From 1990 to 1998, computed mean annual loads of 75,400 kilograms of total nitrogen, 36,950 kilograms of total Kjeldahl nitrogen, 28,870 kilograms of total inorganic nitrogen, and 3,480 kilograms of total phosphorus were contributed to the lake by Big Creek, Hamilton Creek, and Crooked Creek combined. These mean annual loads of nutrients corresponded to borderline eutrophic/mesotrophic conditions in the lake. Of the combined loads, 62 percent of the total nitrogen, 70 percent of the total Kjeldahl nitrogen, 54 percent of the total inorganic nitrogen, and 47 percent of the total phosphorus originated from the forested subbasin of Big Creek. The more residential and agricultural subbasins of Crooked Creek and Hamilton Creek, however, yielded over twice the total phosphorus load per hectare of land use. Crooked and Hamilton Creek subbasins also had higher yields of the more bioavailable total inorganic nitrogen. A simplistic empirical model could not explain the relation between year-to-year nutrient contributions to Converse Lake from the tributaries and the lake’s ability to assimilate those contributions. The potential presence of pathogens in the lake and its tributaries was assessed based on fecal bacterial concentrations. Fecal bacterial concentrations at some tributary sites were above existing criteria for swimmable uses. Contributions of fecal bacteria from tributaries to the lake, however, did not appear to affect the lake because fecal bacterial concentrations at lake sites were one to two orders of magnitude lower than tributary sites and well below criteria levels. Juniper Creek had the highest fecal bacterial concentrations during the study. Trend analysis showed that flow-adjusted fecal streptococcus concentrations increased at Juniper Creek during the 8 years of data collection. Giardia cysts and Cryptosporidium oocysts were detected infrequently at sites in the lake and the raw-water intake during the monitoring effort. Most of the detections occurred during the summer months, but no clear relation between season and cyst density or cyst concentrations in the water supply can be established because of the infrequent detections. Naturally occurring organic carbon compounds derived from the decay of plant material on land were the major source of organic carbon in the Converse Lake watershed. Reactive organic carbon had a greater potential to form trihalomethanes as a result of chlorination during water treatment. In the lake, algae was considered an important source of organic carbon as indicated by strong, positive, statistically significant correlations among chlorophyll a, total organic carbon, and dissolved organic carbon. The algalderived organic carbon, however, was not considered the major source of the reactive organic carbon as indicated by the absence of significant statistical correlations between chlorophyll a, total organic carbon, dissolved organic carbon, ultraviolet absorbance at 254 nanometers, and trihalomethane-formation potential.

Alabama↗

USGS1984

Water resources of Ponape, Caroline Islands

Ponape is the third largest island in the western Pacific, with a land area of 129 square miles. The island is volcanic, nearly circular in shape, and covered with lush tropical vegetation. The mountainous interior has the highest peaks in the western Pacific. Annual rainfall at Kolonia and other coastal areas is 191 inches. Inland at higher elevations, the rainfall is considerably higher. The upper Nanpil River basin averages about 340 inches annually. Runoff-to-rainfall ratios for Ponapean streams show that about two thirds of the rain falling on the island runs off. Flow-duration curves show the similarity of the geology, vegetation, and rainfall of the drainage basins and indicate little ground-water contribution to surface runoff. Surface-water quality is excellent as shown by 53 chemical anlyses of water from 19 streams. Water of the Nanpil River, the source of water for the central water system, is especially low in dissolved elements and solids. This report summarizes in one volume all the hydrologic data collected and provides analyses that may be used by planning and public works officials as a basis for making decisions on the development and management of their water resources. (USGS)

Water-Resources Investigations Report↗

USGS2011

Setting limits: Using air pollution thresholds to protect and restore U.S. ecosystems

More than four decades of research provide unequivocal evidence that sulfur, nitrogen, and mercury pollution have altered, and will continue to alter, our nation's lands and waters. The emission and deposition of air pollutants harm native plants and animals, degrade water quality, affect forest productivity, and are damaging to human health. Many air quality policies limit emissions at the source but these control measures do not always consider ecosystem impacts. Air pollution thresholds at which ecological effects are observed, such as critical loads, are effective tools for assessing the impacts of air pollution on essential ecosystem services and for informing public policy. U.S. ecosystems can be more effectively protected and restored by using a combination of emissions-based approaches and science-based thresholds of ecosystem damage. Based on the results of a comprehensive review of air pollution thresholds, we conclude: ??? Ecosystem services such as air and water purification, decomposition and detoxification of waste materials, climate regulation, regeneration of soil fertility, production and biodiversity maintenance, as well as crop, timber and fish supplies are impacted by deposition of nitrogen, sulfur, mercury and other pollutants. The consequences of these changes may be difficult or impossible to reverse as impacts cascade throughout affected ecosystems. ??? The effects of too much nitrogen are common across the U.S. and include altered plant and lichen communities, enhanced growth of invasive species, eutrophication and acidification of lands and waters, and habitat deterioration for native species, including endangered species. ??? Lake, stream and soil acidification is widespread across the eastern United States. Up to 65% of lakes within sensitive areas receive acid deposition that exceeds critical loads. ??? Mercury contamination adversely affects fish in many inland and coastal waters. Fish consumption advisories for mercury exist in all 50 states and on many tribal lands. High concentrations of mercury in wildlife are also widespread and have multiple adverse effects. ??? Air quality programs, such as those stemming from the 1990 Clean Air Act Amendments, have helped decrease air pollution even as population and energy demand have increased. Yet, they do not adequately protect ecosystems from long-term damage. Moreover they do not address ammonia emissions. ??? A stronger ecosystem basis for air pollutant policies could be established through adoption of science-based thresholds. Existing monitoring programs track vital information needed to measure the response to policies, and could be expanded to include appropriate chemical and biological indicators for terrestrial and aquatic ecosystems and establishment of a national ecosystem monitoring network for mercury. The development and use of air pollution thresholds for ecosystem protection and management is increasing in the United States, yet threshold approaches remain underutilized. Ecological thresholds for air pollution, such as critical loads for nitrogen and sulfur deposition, are not currently included in the formal regulatory process for emissions controls in the United States, although they are now considered in local management decisions by the National Park Service and U.S. Forest Service. Ecological thresholds offer a scientifically sound approach to protecting and restoring U.S. ecosystems and an important tool for natural resource management and policy. ?? The Ecological Society of America.

Issues in Ecology↗

USGS1994

Response of staging brant to disturbance at Izembek Lagoon, Alaska

Human disturbance of migrating waterfowl concerns managers of wildlife populations and refuges. Human disturbance may reduce food intake through interruption of foraging bouts or by displacement from feeding areas (Madsen 1985, Belanger and Bedard 1989), and it may increase energy expenditure from additional time in flight (Korschgen et al., 1985). Reduced food intake and increased energy expenditure can affect the ability of waterfowl to acquire nutrient reserves for successful migration (Fredrickson and Drobney 1979, Davis and Wiseley 1974, Belanger and Bedard 1990). Furthermore, nutrient reserves acquired during fall migration may influence overwinter survival (Haramis et al. 1986). Over 90% of the Pacific Flyway population of brant (Branta bernicla nigricans) annually migrates to the Izembek Lagoon, Alaska and adjacent areas in fall (Bellrose 1976, Reed et al. 1989). During the 4- to 10-week staging period, brant feed predominantly on energy-rich common eelgrass ( Zostera marina ) prior to a transoceanic flight to coastal wintering areas in Washington, Oregon, California, and Mexico (Hansen and Nelson 1957, Morehouse 1974, Bellrose 1976). The lzembek Lagoon, a wetland of international importance (Smart 1987), also is a major staging area for Canada geese ( Branta canadensis taverneri ), emperor geese ( Chen canagica ), and other waterbirds (Ward and Stehn 1989). Brant are disturbed by aircraft and other human activities. Jones and Jones (1966) noted that aircraft caused brant to take flight in fall at the Izembek Lagoon. Aircraft influence movements of molting brant and evoke escape responses (Derksen et al. 1979, Jensen 1990). Aircraft, boats, and hunters affect distribution of wintering brant and cause premature departures from feeding areas (Owens 1977, Kramer et al 1979, Henry 1980). However, few data have been published concerning the extent to which disturbance affects behavior of fall-staging brant. Our objective was to measure current disturbance levels and to determine the extent to which disturbance affects the behavior of brant at the Izembek Lagoon during fall. This baseline information is needed to monitor any future changes in these levels and to provide guidelines for alleviating conflicts where increased human activities cause excessive disturbance.

Alaska↗

USGS2019

HyCReWW: A hybrid coral reef wave and water level metamodel

Wave-induced flooding is a major coastal hazard on tropical islands fronted by coral reefs. The variability of shape, size, and physical characteristics of the reefs across the globe make it difficult to obtain a parameterization of wave run-up, which is needed for risk assessments. Therefore, we developed the HyCReWW metamodel to predict wave run-up under a wide range of reef morphometric and offshore forcing characteristics. Due to the complexity and high dimensionality of the problem, we assumed an idealized one-dimensional reef profile, characterized by seven primary parameters. XBeach Non-Hydrostatic was chosen to create the synthetic dataset, and Radial Basis Functions implemented in MATLAB® were chosen for interpolation. Results demonstrate the applicability of the metamodel to obtain fast and accurate results of wave run-up for a large range of intrinsic reef morphologic and extrinsic hydrodynamic forcing parameters, offering a useful tool for risk management and early warning systems.

Computers & Geosciences↗

USGS2012

Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon

This report summarizes a preliminary study of bed-material transport, vertical and lateral channel changes, and existing datasets for the Tillamook (drainage area 156 square kilometers [km 2 ]), Trask (451 km 2 ), Wilson (500 km 2 ), Kilchis (169 km 2 ), Miami (94 km 2 ), and Nehalem (2,207 km 2 ) Rivers along the northwestern Oregon coast. This study, conducted in coopera-tion with the U.S. Army Corps of Engineers and Oregon Department of State Lands to inform permitting decisions regarding instream gravel mining, revealed that: Study areas along the six rivers can be divided into reaches based on tidal influence and topography. The fluvial (nontidal or dominated by riverine processes) reaches vary in length (2.4-9.3 kilometer [km]), gradient (0.0011-0.0075 meter of elevation change per meter of channel length [m/m]), and bed-material composition (a mixture of alluvium and intermittent bedrock outcrops to predominately alluvium). In fluvial reaches, unit bar area (square meter of bar area per meter of channel length [m 2 /m]) as mapped from 2009 photographs ranged from 7.1 m 2 /m on the Tillamook River to 27.9 m 2 /m on the Miami River. In tidal reaches, all six rivers flow over alluvial deposits, but have varying gradients (0.0001-0.0013 m/m) and lengths affected by tide (1.3-24.6 km). The Miami River has the steepest and shortest tidal reach and the Nehalem River has the flattest and longest tidal reach. Bars in the tidal reaches are generally composed of sand and mud. Unit bar area was greatest in the Tidal Nehalem Reach, where extensive mud flats flank the lower channel. Background factors such as valley and channel confinement, basin geology, channel slope, and tidal extent control the spatial variation in the accumulation and texture of bed material. Presently, the Upper Fluvial Wilson and Miami Reaches and Fluvial Nehalem Reach have the greatest abundance of gravel bars, likely owing to local bed-material sources in combination with decreasing channel gradient and valley confinement. Natural and human-caused disturbances such as mass movements, logging, fire, channel modifications for navigation and flood control, and gravel mining also have varying effects on channel condition, bed-material transport, and distribution and area of bars throughout the study areas and over time. Existing datasets include at least 16 and 18 sets of aerial and orthophotographs that were taken of the study areas in the Tillamook Bay tributary basins and Nehalem River basin, respectively, from 1939 to 2011. These photographs are available for future assessments of long-term changes in channel condition, bar area, and vegetation establishment patterns. High resolution Light Detection And Ranging (LiDAR) surveys acquired in 2007-2009 could support future quantitative analyses of channel morphology and bed-material transport in all study areas. A review of deposited and mined gravel volumes reported for instream gravel mining sites shows that bed-material deposition tends to rebuild mined bar surfaces in most years. Mean annual deposition volumes on individual bars exceeded 3,000 cubic meters (m 3 ) on Donaldson Bar on the Wilson River, Dill Bar on the Kilchis River, and Plant and Winslow Bars on the Nehalem River. Cumulative reported volumes of bed-material deposition were greatest at Donaldson and Dill Bars, totaling over 25,000 m 3 per site from 2004 to 2011. Within this period, reported cumulative mined volumes were greatest for the Donaldson, Plant, and Winslow Bars, ranging from 24,470 to 33,940 m 3 . Analysis of historical stage-streamflow data collected by the U.S. Geological Survey on the Wilson River near Tillamook (14301500) and Nehalem River near Foss (14301000) shows that these rivers have episodically aggraded and incised, mostly following high flow events, but they do not exhibit systematic, long-term trends in bed elevation. Multiple cross sections show that channels near bridge crossings in all six study areas are dynamic with many subject to incision and aggradation as well as lateral shifts in thalweg position and bank deposition and erosion. In fluvial reaches, unit bar area declined a net 5.3-83.6 percent from 1939 to 2009. The documented reduction in bar area may be attributable to several factors, including vegetation establishment and stabilization of formerly active bar surfaces, lateral channel changes and resulting alterations in sediment deposition and erosion patterns, and streamflow and/or tide differences between photographs. Other factors that may be associated with the observed reduction in bar area but not assessed in this reconnaissance level study include changes in the sediment and hydrology regimes of these rivers over the analysis period. In tidal reaches, unit bar area increased on the Tillamook and Nehalem Rivers (98.0 and 14.7 percent, respectively), but declined a net 24.2 to 83.1 percent in the other four tidal reaches. Net increases in bar area in the Tidal Tillamook and Nehalem Reaches were possibly attributable to tidal differences between the photographs as well as sediment deposition behind log booms and pile structures on the Tillamook River between 1939 and 1967. The armoring ratio (ratio of the median grain sizes of a bar's surface and subsurface layers) was 1.6 at Lower Waldron Bar on the Miami River, tentatively indicating a relative balance between transport capacity and sediment supply at this location. Armoring ratios, however, ranged from 2.4 to 5.5 at sites on the Trask, Wilson, Kilchis, and Nehalem Rivers; these coarse armor layers probably reflect limited bed-material supply at these sites. On the basis of mapping results, measured armoring ratios, and channel cross section surveys, preliminary conclusions are that the fluvial reaches on the Tillamook, Trask, Kilchis, and Nehalem Rivers are currently sediment supply-limited in terms of bed material - that is, the transport capacity of the channel generally exceeds the supply of bed material. The relation between transport capacity and sediment is more ambiguous for the fluvial reaches on the Wilson and Miami Rivers, but transport-limited conditions are likely for at least parts of these reaches. Some of these reaches have possibly evolved from sediment supply-limited to transport-limited over the last several decades in response to changing basin and climate conditions. Because of exceedingly low gradients, all the tidal reaches are transport-limited. Bed material in these reaches, however, is primarily sand and finer grain-size material and probably transported as suspended load from upstream reaches. These reaches will be most susceptible to watershed conditions affecting the supply and transport of fine sediment. Compared to basins on the southwestern Oregon coast, such as the Chetco and Rogue River basins, these six basins likely transport overall less gravel bed material. Although tentative in the absence of actual transport measurements, this conclusion is supported by the much lower area and frequency of bars and longer tidal reaches along all the northcoast rivers examined in this study. Previous studies suggest that the expansive and largely unvegetated bars visible in the 1939 photographs are primarily associated with voluminous sedimentation starting soon after the first Tillamook Burn fire in 1933. However, USGS studies of temporal bar trends in other Oregon coastal rivers unaffected by the Tillamook Burn show similar declines in bar area over approximately the same analysis period. In the Umpqua and Chetco River basins, historical declines in bar area are associated with long-term decreases in flood magnitude. Other factors may include changes in the type and volume of large wood and riparian vegetation. Further characterization of hydrology patterns in these basins and possible linkages with climate factors related to flood peaks, such as the Pacific Decadal Oscillation, could support inferences of expected future changes in vegetation establishment and channel planform and profile. More detailed investigations of bed-material transport rates and channel morphology would support assessments of lateral and vertical channel condition and longitudinal trends in bed material. Such assessments would be most practical for the fluvial study areas on the Wilson, Kilchis, Miami, and Nehalem Rivers and relevant to several ongoing management and ecological issues pertaining to sand and gravel transport. Tidal reaches may also be logical subjects for indepth analysis where studies would be more relevant to the deposition and transport of fine sediment (and associated channel and riparian conditions and processes) rather than coarse bed material.

Oregon↗

USGS2022

Dammed water quality — Longitudinal stream responses below beaver ponds in the Umpqua River Basin, Oregon

Beaver-related restoration (BRR) has gained popularity as a means of improving stream ecosystems, but the effects are not fully understood. Studies of dissolved oxygen (DO) and water temperature, key water quality metrics for salmonids, have demonstrated improved conditions in some cases, but warming and decreased DO have been more commonly reported in meta-analyses. These results point to the contingencies that can influence outcomes from BRR. We examined water quality related to beaver ponds in a diverse coastal watershed (Umpqua River Basin, OR, USA). We monitored water temperature 0–400 m above and below beaver ponds and at pond surfaces and bottoms across seven study sites from June through September of 2019. DO was also recorded at two sites at pond surfaces and pond bottoms. Downstream monthly mean daily maximum temperatures were warmer than upstream reference locations by up to 1.9°C at beaver dam outlets but this heating signal attenuated with downstream distance. Downstream warming was greatest in June and July and best predicted by pond bottom temperatures. DO at pond surfaces and bottoms were hypoxic (≤5 mg/L) for more than half of the 32-day monitoring period. Water temperatures increased for short distances below monitored beaver ponds and observed oxygen conditions within ponds were largely unsuitable for salmonid fishes. These findings contrast with some commonly stated expectations of BRR, and we recommend that managers consider these expectations prior to implementation. In some cases, project goals may override water quality concerns but in streams where temperature or DO restoration are objectives, managers may consider using BRR techniques with caution.

Oregon↗

USGS1982

Chemical and physical characteristics of water in estuaries of Texas, October 1976-September 1978

The Texas Water Plan (1968) proposes development and utilization of water resources in Texas and includes provision for the use and preservation of water in the estuaries of the State. Management of estuarine waters requires knowledge of the hydrodynamics and of the continuing changes in the chemical and physical characteristics of water in the estuaries. In September 1967, the U.S. Geological Survey and the Texas Department of Water Resources began a cooperative water-resources investigation of the principal estuaries along the Texas coast (fig. 1) except the Rio Grande estuary, which is under the jurisdiction of the International Boundary and Water Commission, United States and Mexico. The objectives of the investigation are to define: (1) The occurrence, source, and distribution of nutrients; (2) the physical, organic, and inorganic water-quality constituents and their areal distribution and time variations; (3) the chemical and physical characteristics of Gulf water that enters the estuaries; (4) the occurrence, quality, quantity, and dispersion of drainage entering the estuarine systems; and (5) the current patterns, directions, and rates of water movement. The coastal waters of Texas are not classical estuaries, but are similar to them in ecosystems and mixing phenomena. A description of various types of estuaries is presented in "Estuaries" edited by Lauff (1967, p. 3-11). The term estuary as used in this report, refers to concomitant water bodies in which streamflow mixes with seawater.

Open-File Report↗

USGS2022

Influence of riparian thinning on trophic pathways supporting stream food webs in forested watersheds

Resource managers seek to thin second-growth riparian forests to address multiple stream and riparian management objectives, including enhancing aquatic productivity via light-mediated trophic pathways in watersheds of the Pacific Northwest (USA). However, such increases in aquatic productivity depend on complex food web dynamics that link riparian forests and streams. To evaluate how riparian forest thinning influences stream food webs, we conducted a replicated, manipulative field experiment in three northern California watersheds composed of second-growth redwood forests and tracked responses across multiple trophic levels (periphyton, macroinvertebrates, amphibians, and fish) 1 year pre- and post-treatment. Riparian thinning treatments increased light to the stream channel, yet we observed mixed responses by stream food webs. Thinning did not change stream periphyton biomass on natural substrates but increased periphyton accrual on ceramic tiles. Periphyton accrual appeared to be partially muted by top-down effects from invertebrate scrapers, which were more abundant in thinned reaches. Prey in the diets of top predators—coastal giant salamanders ( Dicamptodon tenebrosus ) and coastal cutthroat trout ( Oncorhynchus clarkii clarkii )—did not change in biomass, composition, or structure in response to thinning and instead varied more seasonally and between predators. Stable isotope analysis indicated that shifts in carbon (δ 13 C) signatures of stream periphyton associated with thinning were reflected to varying extents by primary consumers but did not propagate up to top predators. Top predator biomass responses varied between species, where salamander biomass remained unchanged, but cutthroat trout biomass increased slightly in thinned reaches. However, trout biomass responses were not supported by diets or isotopes and correlated weakly with changes in light associated with thinning, suggesting little evidence that responses could be attributed directly to changes in autotrophic pathways. Furthermore, we found no evidence that local trophic responses to thinning propagated into downstream reaches. Taken together, we observed that trophic pathways supporting stream food webs remained largely intact immediately after riparian thinning treatments. Collectively, these results suggest that riparian thinning does not necessarily enhance aquatic productivity in forested streams, indicating that contextual factors driving realized ecological responses should be accounted for when considering thinning as a restoration strategy for stream–riparian ecosystems.

California↗

USGS2010

Strategies for nest-site selection by king eiders

Nest site selection is a critical component of reproduction and has presumably evolved in relation to predation, local resources, and microclimate. We investigated nest-site choice by king eiders (Somateria spectabilis) on the coastal plain of northern Alaska, USA, 2003-2005. We hypothesized that nest-site selection is driven by predator avoidance and that a variety of strategies including concealment, seclusion, and conspecific or inter-specific nest defense might lead to improved nesting success. We systematically searched wetland basins for king eider nests and measured habitat and social variables at nests (n = 212) and random locations (n = 493). King eiders made use of both secluded and concealed breeding strategies; logistic regression models revealed that females selected nests close to water, on islands, and in areas with high willow (Salix spp.) cover but did not select sites near conspecific or glaucous gull (Larus hyperboreus) nests. The most effective nest-placement strategy may vary depending on density and types of nest predators; seclusion is likely a mammalian-predator avoidance tactic whereas concealment may provide protection from avian predators. We recommend that managers in northern Alaska attempt to maintain wetland basins with islands and complex shorelines to provide potential nest sites in the vicinity of water. ?? The Wildlife Society.

Journal of Wildlife Management↗

USGS2011

CRMS vegetation analytical team framework: Methods for collection, development, and use of vegetation response variables

This document identifies the main objectives of the Coastwide Reference Monitoring System (CRMS) vegetation analytical team, which are to provide (1) collection and development methods for vegetation response variables and (2) the ways in which these response variables will be used to evaluate restoration project effectiveness. The vegetation parameters (that is, response variables) collected in CRMS and other coastal restoration projects funded under the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) are identified, and the field collection methods for these parameters are summarized. Existing knowledge on community and plant responses to changes in environmental drivers (for example, flooding and salinity) from published literature and from the CRMS and CWPPRA monitoring dataset are used to develop a suite of indices to assess wetland condition in coastal Louisiana. Two indices, the floristic quality index (FQI) and a productivity index, are described for herbaceous and forested vegetation. The FQI for herbaceous vegetation is tested with a long-term dataset from a CWPPRA marsh creation project. Example graphics for this index are provided and discussed. The other indices, an FQI for forest vegetation (that is, trees and shrubs) and productivity indices for herbaceous and forest vegetation, are proposed but not tested. New response variables may be added or current response variables removed as data become available and as our understanding of restoration success indicators develops. Once indices are fully developed, each will be used by the vegetation analytical team to assess and evaluate CRMS/CWPPRA project and program effectiveness. The vegetation analytical teams plan to summarize their results in the form of written reports and/or graphics and present these items to CRMS Federal and State sponsors, restoration project managers, landowners, and other data users for their input.

Open-File Report↗

USGS2009

Community variations in social vulnerability to Cascadia-related tsunamis in the U.S. Pacific Northwest

Tsunamis generated by Cascadia subduction zone earthquakes pose significant threats to coastal communities in the U. S. Pacific Northwest. Impacts of future tsunamis to individuals and communities will likely vary due to pre-event socioeconomic and demographic differences. In order to assess social vulnerability to Cascadia tsunamis, we adjust a social vulnerability index based on principal component analysis first developed by Cutter et al. (2003) to operate at the census-block level of geography and focus on community-level comparisons along the Oregon coast. The number of residents from blocks in tsunami-prone areas considered to have higher social vulnerability varies considerably among 26 Oregon cities and most are concentrated in four cities and two unincorporated areas. Variations in the number of residents from census blocks considered to have higher social vulnerability in each city do not strongly correlate with the number of residents or city assets in tsunami-prone areas. Methods presented here will help emergency managers to identify community sub-groups that are more susceptible to loss and to develop risk-reduction strategies that are tailored to local conditions. ?? z.

Natural Hazards↗

USGS2025

Synthesis of observed field salinity ranges for oyster and seagrass species in the U.S.

Oyster and seagrass are important sessile, habitat-forming species that may be impacted by changes in salinity regimes from anthropogenic or climatic drivers. While salinity tolerance literature is focused on controlled experiments, observed field salinity ranges of species are more disparate. The salinity ranges in which organisms are observed in the field may not align exactly with their experimentally (wet lab) determined physiological salinity tolerances, since other critical factors control species occurrence. We performed a systematic review to synthesize observed practical salinity ranges for 10 oyster and 12 seagrass species in coastal waters of the United States. Of initially returned search results for oysters and seagrass, only 11.4% and 6.5% met our review inclusion criteria, respectively, corresponding to 3 oyster species and 5 seagrass species. The majority (95%) of the 57 reviewed studies were along the Atlantic and Gulf coasts, with 68% focusing on Crassostrea virginica . Shorter studies following episodic events were more common than long-term monitoring. Observed field salinity ranges were as follows (ppt): Crassostrea virginica (0.1 – 42.8, mean: 19.6), Ostrea lurida (1.7 – 32.5, mean: 27.8), Thalassia testudinum (0 – 65, mean 31.8), Halodule wrightii (<0.5 – 68.7, mean: 18.5), Syringodium filiforme (13.7 – 68.7, mean: 30.4), Ruppia maritima (0 – 29.4, mean: 3.8), and Zostera marina (19.7 – 51.2, mean: 28.9). Place-based examples highlight how reported overlapping salinity ranges for oyster and seagrass species can be used to expand existing habitat suitability models, inform restoration, and provide considerations for guiding holistic management of freshwater inflows to estuaries.

Estuaries and Coasts↗

USGS2000

Contribution of landbird migration to the biological diversity of the northwest gulf coastal plain

This study examined seasonal diversity and feeding behavior of those avian species utilizing that region of the Northwest Gulf Coastal Plain known as the Chenier Plain. Field observations were conducted at three forested locations on coastal cheniers for three years (1993-95) in the spring and at one location for three years (1996-98) in autumn to determine species presence and diet. One hundred and twenty-eight species were present during the spring and 103 species in autumn. The majority of these species were migrants (103 species in spring and 89 species in autumn) and the majority of these were Nearctic/Neotropical species (73 species in spring and 66 species in autumn). The diet of these migrants was more variable than expected. Many insectivorous species were observed to consume seeds, fruit and nectar as well as insects. Because of these varied diets, many species serve as seed dispersers, occasional pollinators and important predators of herbivorus insects. Wooded areas were found to be important in providing food, cover and water for migrating species. A review of historical changes in the landscape of this area is presented and management practices designed to restore wooded habitat to this area are proposed.

Conference Paper↗

USGS2015

Status assessment and conservation plan for the Grasshopper Sparrow ( Ammodramus savannarum )

The Grasshopper Sparrow (Ammodramus savannarum) breeds in grassland habitats throughout much of the U.S., southern and southeastern Canada, and northern Mexico. Additional subspecies are resident in Central America, northern South America, and the Caribbean. It winters primarily in the coastal states of the southeastern U.S., southern portions of the southwestern states, and in Mexico, Central America, and the Caribbean. The species prefers relatively open grassland with intermediate grass height and density and patchy bare ground; because it is widely distributed across different grassland types in North America, it selects different vegetation structure and species composition depending on what is available. In the winter, they use a broader range of grassland habitats including open grasslands, as well as weedy fields and grasslands with woody vegetation. Analyses show significant range-wide population declines from the late 1960s through the present, primarily caused by habitat loss, degradation, and fragmentation. Grasshopper Sparrow is still a relatively common and broadly distributed species, but because of significant population declines and stakeholder concerns, the species is considered of conservation concern nationally and at the state level for numerous states. Many factors, often related to different grassland management practices (e.g., grazing, burning, mowing, management of shrub encroachment, etc.) throughout the species’ range, have impacts on Grasshopper Sparrow distribution, abundance, and reproduction and may represent limiting factors or threats given steep declines in this species’ population. Because of the concerns for this species, Grasshopper Sparrow has been identified as a focal species by the U.S. Fish and Wildlife Service (USFWS) and this Status Assessment and Conservation Plan for Grasshopper Sparrow has been developed. Through literature searches and input from stakeholders across its range, this plan presents information about Grasshopper Sparrow population status, distribution, habitat needs, threats and limiting factors; synthesis of these resources has identified recommended action items addressing population status and trends, habitat conservation, management, research, inventory and monitoring, and education and outreach components that will facilitate Grasshopper Sparrow conservation across its full annual cycle.

Report↗